Citrus Sinensis ID: 019743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEEccccEEEEccccccccEEEcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccEEEEcccccHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccHHHHHHHHccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccHHHHHHHHHHHHHHHcEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccEEEEcccEEEEcccccccccEEccccccccccEccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccEEccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHccccccccEcccccccccccccccccccccccHHHHHHHHccccHHHHHEEcHHccc
Coil and Loop (DISEMBL)
makldekpyaaiiggGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHalglpvppelvekgaNDAASDLIQFARDKhitilypkdfwctkihhpnqveifpshgipdgwepvdigprsVEEITSTITkckafpfdidwsaayhdpaqplvvdigsgngLFLLGMARKRKDLNFLGLEVNGKLVTHCRdslqlsgitngyfiATNATSTFRSIVASYPGKLILVSiqcpnpdfnrpehRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEcdtktnqggwlgensfgvrsdweqhvidrgapmyrlmlskpscvk
Flexible Loop (DISEMBL)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKtnqggwlgensfgvrsdWEQHVIDRGAPmyrlmlskpscvk
Low Complexity Region (SEG)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Disordered region (IsUnstruct)
********YAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLM********
Disordered Region (DISOPRED)
**KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP****
Disordered Region (DISEMBL)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Disordered Region (DISPRO)
***LDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE****T**GGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
B0JUK5	211	tRNA (guanine-N(7)-)-meth	yes	no	0.544	0.867	0.350	6e-26
Q8YVX4	219	tRNA (guanine-N(7)-)-meth	yes	no	0.559	0.858	0.346	9e-26
Q3M3Q5	215	tRNA (guanine-N(7)-)-meth	yes	no	0.559	0.874	0.336	1e-24
Q2JRH1	236	tRNA (guanine-N(7)-)-meth	yes	no	0.529	0.754	0.365	1e-23
P73161	211	tRNA (guanine-N(7)-)-meth	N/A	no	0.550	0.876	0.328	3e-23
Q8DHH6	213	tRNA (guanine-N(7)-)-meth	yes	no	0.541	0.854	0.348	9e-23
Q5N2X5	213	tRNA (guanine-N(7)-)-meth	yes	no	0.553	0.873	0.346	2e-21
P72546	213	tRNA (guanine-N(7)-)-meth	yes	no	0.553	0.873	0.346	2e-21
Q117P8	220	tRNA (guanine-N(7)-)-meth	yes	no	0.547	0.836	0.341	4e-21
Q2JJQ0	239	tRNA (guanine-N(7)-)-meth	yes	no	0.529	0.744	0.350	6e-21

>sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=trmB PE=3 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 11/194 (5%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           DW+  Y D  QPL +DIG   G FLL MA+   ++NFLG+E+   LV       +  G++
Sbjct: 25  DWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEINFLGIEIRQPLVIEANQERERLGLS 84

Query: 197 NGYFIATNATSTFRSIVASYPG-KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           N  F+  N       ++ S P  KL  VSIQ P+P F +   + R+VQ  LV A++  +V
Sbjct: 85  NLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDPWFKQRHSKRRVVQPELVIALAKYMV 144

Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 315
             G VFLQSD+E + L M ++F  +              + +Q  WL EN F V ++ E+
Sbjct: 145 AGGWVFLQSDVESIALEMTERFQAHPHF----------VRQHQTPWLEENIFPVPTEREK 194

Query: 316 HVIDRGAPMYRLML 329
              ++G P+YR + 
Sbjct: 195 STYNKGQPVYRSLF 208

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
Microcystis aeruginosa (strain NIES-843) (taxid: 449447)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3

>sp|Q8YVX4|TRMB_NOSS1 tRNA (guanine-N(7)-)-methyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trmB PE=3 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 11/199 (5%)

Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
           ++W  AY  P QPL +DIG   G F+L MA+   + NFLGLE+   LV          G+
Sbjct: 31  LEWEKAYSTPHQPLHLDIGCARGRFVLQMAQVEPNWNFLGLEIRESLVIEANQFRSQLGL 90

Query: 196 TNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 254
           TN +++  NA ++ + +++S P G L  V+IQ P+P F     + R+VQ  LV+ +++ L
Sbjct: 91  TNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDIANYL 150

Query: 255 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 314
              G VFLQSD+E V + M  +F            +    K   G WL EN   V ++ E
Sbjct: 151 AVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGTGEWLTENPLPVATERE 200

Query: 315 QHVIDRGAPMYRLMLSKPS 333
               +RG P+YR +  + S
Sbjct: 201 TTTQNRGEPVYRALFERSS 219

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q3M3Q5|TRMB_ANAVT tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 11/199 (5%)

Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
           ++W   Y  P QPL +DIG   G F+L MA+     NFLGLE+   LV          G+
Sbjct: 27  LEWEKVYSSPHQPLHLDIGCARGRFVLQMAQVEPRWNFLGLEIREPLVIEANQFRSQLGL 86

Query: 196 TNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 254
           +N +++  NA ++ + +++S P G L  V+IQ P+P F     + R+VQ  LV+ +++ L
Sbjct: 87  SNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDIANYL 146

Query: 255 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 314
              G VFLQSD+E V + M  +F            +    K   G WL EN   V ++ E
Sbjct: 147 AVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGSGEWLSENPLPVATERE 196

Query: 315 QHVIDRGAPMYRLMLSKPS 333
               +RG P+YR +  + S
Sbjct: 197 TTTQNRGEPVYRALFERIS 215

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=trmB PE=3 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 103/197 (52%), Gaps = 19/197 (9%)

Query: 138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC---RDSLQLSG 194
           W   Y    QPL +DIGSG+G FLL MA+++ D NFLG+E+   LV      RD L   G
Sbjct: 55  WERVYRRLGQPLHLDIGSGSGRFLLRMAQEQPDWNFLGVEIRQPLVERANAWRDEL---G 111

Query: 195 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 254
           + N +F+  N   + R + A  PG L  V+IQ P+P F +  H+ R+VQ  LV  ++ LL
Sbjct: 112 LDNVHFLFANINVSLRHLFA--PGDLSRVTIQFPDPWFKKRHHKRRIVQPRLVADLALLL 169

Query: 255 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 314
                VFLQSD+ EV   M  +FLE+ +                 G + +N FG+ ++ E
Sbjct: 170 QPGSPVFLQSDVREVAEEMVDRFLEHPQ-----------FWNPYQGPIDDNPFGIPTERE 218

Query: 315 QHVIDRGAPMYRLMLSK 331
              +  G P+YR  L +
Sbjct: 219 WQCLQLGLPIYRYWLER 235

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|P73161|TRMB_SYNY3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trmB PE=3 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           DW+  Y D  +PL +DIG   G F L MA++  D NFLG+E+   LV    ++    G+ 
Sbjct: 25  DWATVYDDVQRPLHLDIGCARGRFPLKMAQQHPDWNFLGVEIRQPLVLEANETGDRLGLK 84

Query: 197 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 256
           N +++  N         +++P  L  VSIQ P+P F +  ++ R+ Q  LV A+++ L  
Sbjct: 85  NLHYLFGNINVEPEKFFSAFPPTLQRVSIQFPDPWFKQRHNKRRVAQPELVTAIANALPP 144

Query: 257 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQH 316
            G+V LQSD+E V   M+ +F E      V   D          WL EN  GV ++ E  
Sbjct: 145 GGEVLLQSDVEPVAQDMRDRFAE--NDNFVFTHD--------TPWLAENPLGVPTEREIA 194

Query: 317 VIDRGAPMYRLMLSK 331
             +   P+YR +L +
Sbjct: 195 CFNLQRPVYRCLLQR 209

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8DHH6|TRMB_THEEB tRNA (guanine-N(7)-)-methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=trmB PE=3 SV=1

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 101/195 (51%), Gaps = 13/195 (6%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           DWS  Y  P+QPL +DIG   G FLL MA    + NFLGLE+   LV    +      + 
Sbjct: 29  DWSRIYEQPSQPLHLDIGCARGTFLLEMAALYPEQNFLGLEIRYPLVVAANERRDRQQLR 88

Query: 197 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 256
           N +++  NA      I+   P  L  V+IQ P+P F R  H+ R+V   LV  +++LL  
Sbjct: 89  NLHYLWGNANVHLSKILGGLP--LHTVTIQFPDPWFKRRHHKRRVVTPELVATLAELLPA 146

Query: 257 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQH 316
            G+V LQSD+ EV   M QQF  +G  +         T T+   WL ++ + V ++ E+ 
Sbjct: 147 GGRVVLQSDVFEVAESMVQQFRAHGAFR--------STCTD---WLPQSPWPVATEREKC 195

Query: 317 VIDRGAPMYRLMLSK 331
           V+++G  +YR    +
Sbjct: 196 VLNKGLAVYRWQFER 210

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q5N2X5|TRMB_SYNP6 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trmB PE=3 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 100/199 (50%), Gaps = 13/199 (6%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           DW   Y D  +PL +DIG   G FLL MA  + + N+LGLE+   LV       +   +T
Sbjct: 25  DWQQVYADCDRPLHLDIGCARGRFLLAMATAQPEWNYLGLEIREPLVDEANAIARERELT 84

Query: 197 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           N Y+  +NA      ++ S P G L  VSIQ P+P F +   + R+VQ  LV+A++  L 
Sbjct: 85  NLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDPWFKKRHQKRRVVQPELVQALATALP 144

Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 315
              +VFLQSD+ EV   M + F    +      Q  C        WL EN   V ++ E 
Sbjct: 145 AGAEVFLQSDVLEVQAEMCEHFAAEPR-----FQRTC------LDWLPENPLPVPTEREI 193

Query: 316 HVIDRGAPMYR-LMLSKPS 333
            V ++  P+YR L + +P+
Sbjct: 194 AVQNKQLPVYRALFIRQPA 212

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|P72546|TRMB_SYNE7 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=trmB PE=3 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 100/199 (50%), Gaps = 13/199 (6%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           DW   Y D  +PL +DIG   G FLL MA  + + N+LGLE+   LV       +   +T
Sbjct: 25  DWQQVYADCDRPLHLDIGCARGRFLLAMATAQPEWNYLGLEIREPLVDEANAIARERELT 84

Query: 197 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           N Y+  +NA      ++ S P G L  VSIQ P+P F +   + R+VQ  LV+A++  L 
Sbjct: 85  NLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDPWFKKRHQKRRVVQPELVQALATALP 144

Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 315
              +VFLQSD+ EV   M + F    +      Q  C        WL EN   V ++ E 
Sbjct: 145 AGAEVFLQSDVLEVQAEMCEHFAAEPR-----FQRTC------LDWLPENPLPVPTEREI 193

Query: 316 HVIDRGAPMYR-LMLSKPS 333
            V ++  P+YR L + +P+
Sbjct: 194 AVQNKQLPVYRALFIRQPA 212

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q117P8|TRMB_TRIEI tRNA (guanine-N(7)-)-methyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=trmB PE=3 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           ++S  Y D  +PL +DIG   G FL  MA+   + NFLGLE+   LV    +     G+ 
Sbjct: 25  NFSDIYADIKKPLYLDIGCARGRFLWQMAQVEPEWNFLGLEIREPLVIEANNWRDEKGLN 84

Query: 197 NGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           N +++  NA  +   I  S+P G L  VSI  P+P F R     R+VQ  LVE +++ L 
Sbjct: 85  NLHYLFCNANISLGKIFESFPKGILKKVSILFPDPWFKRRHQTRRVVQPKLVEDLANYLT 144

Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 315
             G+VFL SDIE+V   M  +F  +G               +   WL EN   V S+ E+
Sbjct: 145 VGGEVFLHSDIEKVAKEMCNRFSAHG-----------SFYRSYNDWLKENILPVLSEREK 193

Query: 316 HVIDRGAPMYRLMLSK 331
             + +  P+YR +  K
Sbjct: 194 VTLGKNQPVYRALFIK 209

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q2JJQ0|TRMB_SYNJB tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=trmB PE=3 SV=1

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 101/197 (51%), Gaps = 19/197 (9%)

Query: 138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC---RDSLQLSG 194
           W   Y    QP  +DIG+G+G FLL +A+++ D NFLG+E+   LV      RD L   G
Sbjct: 58  WERVYRRLGQPFHLDIGTGSGRFLLRIAQEQPDWNFLGVEIRQALVERANAWRDEL---G 114

Query: 195 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 254
           + N +F+  N   + R + A  PG L  V+I  P+P F +  H+ R+VQ  LV  ++ LL
Sbjct: 115 LDNVHFLFANINVSLRHLFA--PGDLSRVTILFPDPWFKKRHHKRRIVQPQLVADLALLL 172

Query: 255 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 314
                VFLQSDI+EV   M  +FLE+ +              +QG  L  N  G+ ++ E
Sbjct: 173 RPGSPVFLQSDIQEVAEEMAARFLEHPQF----------WDPHQGP-LDSNPLGIPTERE 221

Query: 315 QHVIDRGAPMYRLMLSK 331
              +    P+YR  L +
Sbjct: 222 WQCLQLDLPIYRYWLER 238

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
359481547	618	PREDICTED: phosphoglycerate kinase-like	0.607	0.330	0.745	1e-87
297741637	581	unnamed protein product [Vitis vinifera]	0.607	0.351	0.745	1e-87
255556946	678	phosphoglycerate kinase, putative [Ricin	0.601	0.297	0.740	3e-87
224140203	606	predicted protein [Populus trichocarpa]	0.604	0.334	0.724	2e-84
356551092	710	PREDICTED: phosphoglycerate kinase-like	0.595	0.281	0.671	1e-79
449518274	675	PREDICTED: phosphoglycerate kinase, chlo	0.601	0.299	0.661	1e-76
449440121	674	PREDICTED: phosphoglycerate kinase, chlo	0.592	0.295	0.661	1e-75
222612897	1032	hypothetical protein OsJ_31675 [Oryza sa	0.583	0.189	0.594	7e-63
78708732	673	methyltransferase family protein, expres	0.583	0.291	0.594	8e-63
242034345	649	hypothetical protein SORBIDRAFT_01g02093	0.577	0.298	0.579	6e-61

>gi|359481547|ref|XP_002276911.2| PREDICTED: phosphoglycerate kinase-like [Vitis vinifera]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 177/204 (86%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           +A+P +IDW+AAY  P+QPLVVDIGSGNGLFLL MA++R+DLNFLGLE+N KLV  C D 
Sbjct: 412 RAYPVEIDWNAAYSHPSQPLVVDIGSGNGLFLLAMAKRREDLNFLGLEINEKLVRRCLDC 471

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +   GI NGYFIATNATSTFRSIV+SYPG L+LVSIQCPNPDFN+PEHRWRM+QRSLVEA
Sbjct: 472 VHQYGIMNGYFIATNATSTFRSIVSSYPGDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEA 531

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V+DLL  DGKVFLQSDIE V +RMK+ FL+YGKGKL +V +E  T+T++ GWL EN FGV
Sbjct: 532 VADLLASDGKVFLQSDIEAVAVRMKEHFLKYGKGKLSVVHNEDCTETDRKGWLKENPFGV 591

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPS 333
           RSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 592 RSDWEQHVVDRGAPMYRLMLSKST 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741637|emb|CBI32769.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 177/204 (86%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           +A+P +IDW+AAY  P+QPLVVDIGSGNGLFLL MA++R+DLNFLGLE+N KLV  C D 
Sbjct: 375 RAYPVEIDWNAAYSHPSQPLVVDIGSGNGLFLLAMAKRREDLNFLGLEINEKLVRRCLDC 434

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +   GI NGYFIATNATSTFRSIV+SYPG L+LVSIQCPNPDFN+PEHRWRM+QRSLVEA
Sbjct: 435 VHQYGIMNGYFIATNATSTFRSIVSSYPGDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEA 494

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V+DLL  DGKVFLQSDIE V +RMK+ FL+YGKGKL +V +E  T+T++ GWL EN FGV
Sbjct: 495 VADLLASDGKVFLQSDIEAVAVRMKEHFLKYGKGKLSVVHNEDCTETDRKGWLKENPFGV 554

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPS 333
           RSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 555 RSDWEQHVVDRGAPMYRLMLSKST 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556946|ref|XP_002519506.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223541369|gb|EEF42920.1| phosphoglycerate kinase, putative [Ricinus communis]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 151/204 (74%), Positives = 177/204 (86%), Gaps = 2/204 (0%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           +A+PF IDWSA YHDPAQPLVVDIG GNG+FLLGMAR++KDLNFLGLE+N KLV  C DS
Sbjct: 474 RAYPFKIDWSAVYHDPAQPLVVDIGCGNGMFLLGMARRKKDLNFLGLEINKKLVRRCLDS 533

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +  SGI+NG+FIATNAT+TFRSIV+SYPG+L+LVSIQCPNPDFN PEHRWRM+QRSLVEA
Sbjct: 534 VHQSGISNGHFIATNATTTFRSIVSSYPGELVLVSIQCPNPDFNDPEHRWRMLQRSLVEA 593

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V+DLL HDGKVFLQSDI+ V +RMK+ FL+YG+G+L+LV D+ +       WL EN FGV
Sbjct: 594 VADLLAHDGKVFLQSDIKTVAVRMKELFLKYGRGRLMLVNDQFEATIRV--WLEENPFGV 651

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPS 333
           RSDWEQHVID+G PMYRLMLSK +
Sbjct: 652 RSDWEQHVIDQGRPMYRLMLSKST 675

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140203|ref|XP_002323474.1| predicted protein [Populus trichocarpa] gi|222868104|gb|EEF05235.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/207 (72%), Positives = 173/207 (83%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           +A+PF+IDW +AY +PAQPLVVDIGSG+GLFLLGMAR+RKDLNFLGLE+N KLV  C DS
Sbjct: 400 RAYPFEIDWKSAYCNPAQPLVVDIGSGSGLFLLGMARRRKDLNFLGLEINSKLVRRCMDS 459

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +   GI NGYFI TNAT+TFRSIV+SYPG+L+LVSIQCPNPDFN PEHRWRM+QRSL++A
Sbjct: 460 VHQYGIQNGYFIVTNATTTFRSIVSSYPGELVLVSIQCPNPDFNNPEHRWRMLQRSLIKA 519

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V DLL  DGKVFLQSD+E V LRMK+ FL+ GKGKL L  D+   + N G WL EN FGV
Sbjct: 520 VVDLLALDGKVFLQSDLEAVALRMKELFLKIGKGKLNLWNDQYHARMNLGEWLEENPFGV 579

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPSCVK 336
            SDWEQHVIDRG PMYRLMLSK S ++
Sbjct: 580 MSDWEQHVIDRGDPMYRLMLSKSSGIE 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551092|ref|XP_003543912.1| PREDICTED: phosphoglycerate kinase-like [Glycine max]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 169/207 (81%), Gaps = 7/207 (3%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           + +PF+I+W++ Y DPAQ LVVDIGSGNGLFLL MAR+++DLNFLGLE+N KLV  C DS
Sbjct: 509 RGYPFEINWNSIYSDPAQSLVVDIGSGNGLFLLEMARRKQDLNFLGLEINEKLVLRCLDS 568

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +   GI NGYFIATNATSTF SIV+SYPG+L+LVSIQCPNPDFN+PEHRWRM+QRSL+EA
Sbjct: 569 IHQFGIKNGYFIATNATSTFHSIVSSYPGELVLVSIQCPNPDFNKPEHRWRMLQRSLIEA 628

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V DLL  +GK+FLQSD+E V +RMK+QF  YGKGKL       D +  Q  WL EN FGV
Sbjct: 629 VVDLLAPNGKIFLQSDVEAVAIRMKEQFFRYGKGKL-------DLEHGQSEWLEENPFGV 681

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPSCVK 336
           RSDWE+HV++RGAPMYR+M +K S ++
Sbjct: 682 RSDWERHVLERGAPMYRMMFTKSSDIR 708

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518274|ref|XP_004166167.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/207 (66%), Positives = 168/207 (81%), Gaps = 5/207 (2%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           +A+P++I+W A + D A PLVVDIGSGNG+FLL MAR+RKD NFLGLE+N KLV  C  S
Sbjct: 471 RAYPYEINWDAVFCDTALPLVVDIGSGNGMFLLEMARRRKDHNFLGLEINEKLVKRCLHS 530

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +    + NG+FIATNATSTFRSIV +YPG+L+LVSIQCPNPDFN+PEHRWRM+QRSLVEA
Sbjct: 531 VHQLEMKNGHFIATNATSTFRSIVCNYPGELVLVSIQCPNPDFNKPEHRWRMLQRSLVEA 590

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V+DLL  +GKVFLQSD+E V LRM++ FL YGKGKL ++Q++   +     WL EN FGV
Sbjct: 591 VADLLASNGKVFLQSDVEAVALRMREAFLLYGKGKLGVLQEQVGEE-----WLSENPFGV 645

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPSCVK 336
           RSDWE+HV+DRG PM+RLMLSK +  K
Sbjct: 646 RSDWERHVLDRGDPMFRLMLSKSTTTK 672

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440121|ref|XP_004137833.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 166/204 (81%), Gaps = 5/204 (2%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           +A+P++I+W A + D   PLVVDIGSGNG+FLL MAR+RKD NFLGLE+N KLV  C  S
Sbjct: 471 RAYPYEINWDAVFCDTTLPLVVDIGSGNGMFLLEMARRRKDHNFLGLEINEKLVKRCLHS 530

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +    + NG+FIATNATSTFRSIV +YPG+L+LVSIQCPNPDFN+PEHRWRM+QRSLVEA
Sbjct: 531 VHQLEMKNGHFIATNATSTFRSIVCNYPGELVLVSIQCPNPDFNKPEHRWRMLQRSLVEA 590

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V+DLL  +GKVFLQSD+E V LRM++ FL YGKGKL ++Q++   +     WL EN FGV
Sbjct: 591 VADLLASNGKVFLQSDVEAVALRMREAFLLYGKGKLGVLQEQVGEE-----WLSENPFGV 645

Query: 310 RSDWEQHVIDRGAPMYRLMLSKPS 333
           RSDWE+HV+DRG PM+RLMLSK +
Sbjct: 646 RSDWERHVLDRGDPMFRLMLSKST 669

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222612897|gb|EEE51029.1| hypothetical protein OsJ_31675 [Oryza sativa Japonica Group]

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 6/202 (2%)

Query: 130  KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
            K++P+ I W+A + D +QPLVVDIGSGNGLFL  MAR  +  NFLGLE+N KLV  C   
Sbjct: 836  KSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRD 895

Query: 190  LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
            +      N YF++TNATSTFRSIV+SYPG+L LV+IQCPNPDFNR ++RWRMV+R LVEA
Sbjct: 896  VASVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTIQCPNPDFNREQNRWRMVRRMLVEA 955

Query: 250  VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
            ++DLL  +GKV+LQSD+E V+LRMK+QF+ +GKG+LV+  D        G    +N FG 
Sbjct: 956  IADLLQPNGKVYLQSDVESVLLRMKEQFMTHGKGQLVVDDD------GGGDHQMDNPFGA 1009

Query: 310  RSDWEQHVIDRGAPMYRLMLSK 331
             SDWE+HV+ RGAPMYR ML K
Sbjct: 1010 ASDWERHVLARGAPMYRTMLRK 1031

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78708732|gb|ABB47707.1| methyltransferase family protein, expressed [Oryza sativa Japonica Group]

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 6/202 (2%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           K++P+ I W+A + D +QPLVVDIGSGNGLFL  MAR  +  NFLGLE+N KLV  C   
Sbjct: 477 KSYPYQIPWNAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRD 536

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +      N YF++TNATSTFRSIV+SYPG+L LV+IQCPNPDFNR ++RWRMV+R LVEA
Sbjct: 537 VASVDKRNLYFVSTNATSTFRSIVSSYPGQLALVTIQCPNPDFNREQNRWRMVRRMLVEA 596

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           ++DLL  +GKV+LQSD+E V+LRMK+QF+ +GKG+LV+  D        G    +N FG 
Sbjct: 597 IADLLQPNGKVYLQSDVESVLLRMKEQFMTHGKGQLVVDDD------GGGDHQMDNPFGA 650

Query: 310 RSDWEQHVIDRGAPMYRLMLSK 331
            SDWE+HV+ RGAPMYR ML K
Sbjct: 651 ASDWERHVLARGAPMYRTMLRK 672

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034345|ref|XP_002464567.1| hypothetical protein SORBIDRAFT_01g020930 [Sorghum bicolor] gi|241918421|gb|EER91565.1| hypothetical protein SORBIDRAFT_01g020930 [Sorghum bicolor]

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 145/202 (71%), Gaps = 8/202 (3%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
           K +P+ I WS  + +P  PLVVDIGSGNGLFL  MA+  +  NFLGLE+N KLV  C   
Sbjct: 455 KCYPYRIPWSTVFFEPTLPLVVDIGSGNGLFLFQMAKSCESSNFLGLEMNEKLVIRCLQG 514

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           +      N YF++TNATSTFRSIV+SYPG+L LV+IQCPNPDFN+ ++RWRMV+R LVEA
Sbjct: 515 MTSDEKRNLYFVSTNATSTFRSIVSSYPGRLTLVTIQCPNPDFNKEQNRWRMVRRMLVEA 574

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
           V DLL  +G+V+LQSD+E V+L MK+QFL Y KG+LV+            G   +N FGV
Sbjct: 575 VVDLLHTNGQVYLQSDVESVLLVMKEQFLSYSKGQLVI--------DGVSGHQIDNPFGV 626

Query: 310 RSDWEQHVIDRGAPMYRLMLSK 331
            SDWE+HV+ RGAPMYR ML K
Sbjct: 627 VSDWERHVLARGAPMYRTMLKK 648

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2175971	312	AT5G17660 [Arabidopsis thalian	0.711	0.766	0.357	2.5e-33
TAIR|locus:2087750	481	PGK1 "phosphoglycerate kinase	0.360	0.251	0.336	8.2e-12
TAIR|locus:2206410	401	PGK "phosphoglycerate kinase"	0.455	0.381	0.314	9.1e-12
TAIR|locus:2205215	478	AT1G56190 [Arabidopsis thalian	0.360	0.253	0.336	1.8e-11
TIGR_CMR|BA_5367	394	BA_5367 "phosphoglycerate kina	0.363	0.309	0.306	8.7e-09
TIGR_CMR|VC_0453	239	VC_0453 "tRNA (guanine-N(7)-)-	0.383	0.539	0.285	4.2e-08
CGD|CAL0000415	417	PGK1 [Candida albicans (taxid:	0.372	0.299	0.281	1.3e-07
UNIPROTKB|P46273	417	PGK1 "Phosphoglycerate kinase"	0.372	0.299	0.281	1.3e-07
DICTYBASE|DDB_G0287595	420	pgkA "calmodulin-binding prote	0.369	0.295	0.275	1.8e-07
UNIPROTKB|P41759	416	PGK "Phosphoglycerate kinase"	0.372	0.300	0.265	4.9e-07

TAIR|locus:2175971 AT5G17660 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 89/249 (35%), Positives = 132/249 (53%)

Query:    84 KDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYH 143
             KD    ++      E+  +H I +    V I  + V  ++S+ +K    P    W   Y 
Sbjct:    66 KDLRSNELVELEYAELNLNHKISEEVGHVRIR-QHVNPLSSSFSKPAPVPV---WDEVYK 121

Query:   144 DPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA 202
             DP+ PL+VDIGSG+G FLL  A K  +  N+LGLE+  KLV      +   G++N +FI 
Sbjct:   122 DPSLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQKLVKRANFWVNELGLSNVHFIF 181

Query:   203 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262
              NA  +F  +++SYPG L +VSI CP+P F +   + R+VQ+ LV ++   L   GK+F+
Sbjct:   182 ANAMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRVVQKPLVNSILQNLKPGGKIFV 241

Query:   263 QSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGA 322
             QSD+ +V   M+ Q  E        V    DT   + GWL EN  G+R++ E H    GA
Sbjct:   242 QSDVLDVAQDMRDQLDEESN-----VLQHMDTVDTEDGWLTENPMGIRTEREIHAEFEGA 296

Query:   323 PMYRLMLSK 331
              +YR +  K
Sbjct:   297 RIYRRLYQK 305

GO:0005634 "nucleus" evidence=ISM

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

TAIR|locus:2087750 PGK1 "phosphoglycerate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 41/122 (33%), Positives = 66/122 (54%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct:   266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A++L+  A+ K +++L P D        P+   +I P+ GI DGW  +DIGP S++    
Sbjct:   326 ATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNE 385

Query:   125 TI 126
              +
Sbjct:   386 AL 387

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0010319 "stromule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2206410 PGK "phosphoglycerate kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 51/162 (31%), Positives = 79/162 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             +KP+AAI+GG  +  K   +  L +  D L+  G M F    A GL V   LVE+   D 
Sbjct:   191 KKPFAAIVGGSKVSTKIGVIESLLNTVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDL 250

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A  L++ A+ K +++L P D        P+   +I P+  IPDGW  +DIGP S++  + 
Sbjct:   251 AKSLMEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPATAIPDGWMGLDIGPDSIKTFSE 310

Query:   125 TITKCKAF----P---FDIDWSAAYHDPAQPLVVDIGSGNGL 159
              +   K      P   F+ D  AA  +     + ++ SG G+
Sbjct:   311 ALDTTKTIIWNGPMGVFEFDKFAAGTEAVAKQLAEL-SGKGV 351

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2205215 AT1G56190 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 41/122 (33%), Positives = 65/122 (53%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct:   263 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 322

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A+ L+  A+ + +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct:   323 ATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 382

Query:   125 TI 126
              +
Sbjct:   383 AL 384

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TIGR_CMR|BA_5367 BA_5367 "phosphoglycerate kinase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 158 (60.7 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 38/124 (30%), Positives = 61/124 (49%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             E+P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  +   L E    + 
Sbjct:   186 ERPFTAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245

Query:    66 ASDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A + +Q A++K +    P D   T+        +I     IP  WE VDIGP++  EI +
Sbjct:   246 AKEFMQLAKEKGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKT-REIYA 304

Query:   125 TITK 128
              + K
Sbjct:   305 DVIK 308

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS

GO:0006096 "glycolysis" evidence=ISS

TIGR_CMR|VC_0453 VC_0453 "tRNA (guanine-N(7)-)-methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 146 (56.5 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 38/133 (28%), Positives = 66/133 (49%)

Query:   136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
             +DW   + +   P+V++IG G G  L+ MA+   + NFLG+EV+   V  C  S + +G+
Sbjct:    53 LDWQQVFGND-NPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGV 111

Query:   196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LL 254
             TN   +  +A   F  ++      L  + +  P+P   +  H+ R+VQ    E V   L+
Sbjct:   112 TNLRVMCHDAVEVFAHMIPD--NSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLM 169

Query:   255 VHDGKVFLQSDIE 267
             +  G   + +D E
Sbjct:   170 IGSGVFHMATDWE 182

GO:0006400 "tRNA modification" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

CGD|CAL0000415 PGK1 [Candida albicans (taxid:5476)]

 Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 36/128 (28%), Positives = 60/128 (46%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  L  + D LI  G M+F     L  +P+   L ++    
Sbjct:   204 ERPFLAILGGAKVSDKIQLIDNLLDKVDMLIVGGGMAFTFKKILNKMPIGDSLFDEAGAK 263

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEI 122
                 L++ A+  ++ ++ P DF    K     +      + GIPD W  +D GP+SVE  
Sbjct:   264 NVEHLVEKAKKNNVELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELF 323

Query:   123 TSTITKCK 130
                + K K
Sbjct:   324 QQAVAKAK 331

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0006096 "glycolysis" evidence=NAS

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS;NAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=IEA

UNIPROTKB|P46273 PGK1 "Phosphoglycerate kinase" [Candida albicans SC5314 (taxid:237561)]

 Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 36/128 (28%), Positives = 60/128 (46%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  L  + D LI  G M+F     L  +P+   L ++    
Sbjct:   204 ERPFLAILGGAKVSDKIQLIDNLLDKVDMLIVGGGMAFTFKKILNKMPIGDSLFDEAGAK 263

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEI 122
                 L++ A+  ++ ++ P DF    K     +      + GIPD W  +D GP+SVE  
Sbjct:   264 NVEHLVEKAKKNNVELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELF 323

Query:   123 TSTITKCK 130
                + K K
Sbjct:   324 QQAVAKAK 331

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006096 "glycolysis" evidence=NAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0051701 "interaction with host" evidence=IPI

DICTYBASE|DDB_G0287595 pgkA "calmodulin-binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 35/127 (27%), Positives = 62/127 (48%)

Query:     7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
             KP+ AI+GG  + +K   +  L  + D +I  G M+F     +    +   L EK A   
Sbjct:   209 KPFLAILGGAKVSDKIKLIENLLYKVDEMIIGGGMAFTFKKFIDNKEIGSSLFEKTAEQI 268

Query:    66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEIT 123
               D+I  A   ++ + +P D+    K  +   ++ +    GIP+GW  +D GP +++E  
Sbjct:   269 TKDIIAKAAKNNVKLHFPVDYVIADKFDNDANIKTVTQDQGIPEGWMGLDCGPETIKENR 328

Query:   124 STITKCK 130
              TI++ K
Sbjct:   329 DTISRAK 335

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=ISS

GO:0005516 "calmodulin binding" evidence=IEA;IDA

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;IC

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P41759 PGK "Phosphoglycerate kinase" [Schistosoma mansoni (taxid:6183)]

 Score = 143 (55.4 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 34/128 (26%), Positives = 65/128 (50%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   ++ +  + + LI  G M++  +  +  + +   L +    +
Sbjct:   203 ERPFLAILGGAKVSDKIQLINNMLDKVNELIIGGGMAYTFLKQIHNMHIGNSLFDAPGAE 262

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
                 +++ A+ K++ I  P DF    K       EI     GI DGW  +DIGP+++EE 
Sbjct:   263 IVHKVMETAKAKNVAIHLPVDFVTADKFADDANTEIRTIQSGIADGWMGLDIGPKTIEEF 322

Query:   123 TSTITKCK 130
             +  I++ K
Sbjct:   323 SKVISRAK 330

GO:0004618 "phosphoglycerate kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0006096 "glycolysis" evidence=NAS

GO:0016310 "phosphorylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
3rd Layer	2.1.1.33	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023235001	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (581 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018496001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)		•	•				•		0.564
	GSVIVG00036055001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (321 aa)		•					•		0.483
	GSVIVG00024314001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)		•					•		0.483
	GSVIVG00038611001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (573 aa)							•		0.455
	26N20_30	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa)							•		0.455
	GSVIVG00025495001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (475 aa)							•		0.455
	GSVIVG00024850001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (491 aa)							•		0.455
	GSVIVG00023818001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (569 aa)							•		0.455
	GSVIVG00021710001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (264 aa)							•		0.455
	GSVIVG00021709001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (267 aa)							•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	2e-21
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	3e-21
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	2e-19
pfam00162	383	pfam00162, PGK, Phosphoglycerate kinase	4e-19
PRK00073	389	PRK00073, pgk, phosphoglycerate kinase; Provisiona	9e-18
cd00318	397	cd00318, Phosphoglycerate_kinase, Phosphoglycerate	2e-17
PLN03034	481	PLN03034, PLN03034, phosphoglycerate kinase; Provi	4e-17
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	3e-16
PLN02282	401	PLN02282, PLN02282, phosphoglycerate kinase	1e-15
PRK13962	645	PRK13962, PRK13962, bifunctional phosphoglycerate	1e-15
COG0126	395	COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr	6e-14
PTZ00005	417	PTZ00005, PTZ00005, phosphoglycerate kinase; Provi	1e-11
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	4e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 134 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL-QL 192
           F +DW A + +  QPL ++IG G G FL+ MA+K  D  F+G+E+    V      +  L
Sbjct: 9   FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67

Query: 193 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 252
            G+ N   +  +A     ++     G L  + I  P+P   +  H+ R++Q   ++  + 
Sbjct: 68  RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125

Query: 253 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 309
           +L   G + L +D+EE    M +   E+   + +L          +   L E+      +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175

Query: 310 RSDWEQHVIDRGAPMYRLMLSK 331
            +++EQ V   G P++ L+  K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 89.4 bits (223), Expect = 3e-21
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
           +DW+  + + A P+ ++IG G G FL+ MA+   D+NF+G+EV+   V      ++  G+
Sbjct: 31  LDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL 89

Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           TN   +  +A      +     G L  + +  P+P   +  H+ R+VQ   +   +  L 
Sbjct: 90  TNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK 147

Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYG 281
             G++   +D E     M +     G
Sbjct: 148 PGGEIHFATDWEGYAEYMLEVLSAEG 173

Length = 202

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 15/202 (7%)

Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
            DWSA + +   P+V++IG G G FL+ MA+K  + NFLG+E+    V      ++  G+
Sbjct: 38  GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97

Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
            N   +  +A      ++    G L  + I  P+P   +  H+ R+ Q   ++  +  L 
Sbjct: 98  KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155

Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 312
             G +   +D EE    M  + LE+        +D         N      E  F     
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210

Query: 313 WEQHVIDRGAPMYRLMLSKPSC 334
                   G P+Y L   K   
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227

Length = 227

>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase

 Score = 86.7 bits (216), Expect = 4e-19
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D L+  G M+   + A G  +   LVE+   + 
Sbjct: 187 ERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVEEDLIET 246

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A +L++ A++K + I+ P D         + + ++     IPDGW  +DIGP+++E    
Sbjct: 247 AKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPKTIELFAE 306

Query: 125 TITKCK 130
            I   K
Sbjct: 307 VIKDAK 312

Length = 383

>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional

 Score = 82.8 bits (206), Expect = 9e-18
 Identities = 40/125 (32%), Positives = 61/125 (48%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   L  L  + D LI  G M+   + A G  V   LVE+   D 
Sbjct: 184 ERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDT 243

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
           A +L++ A++K + I  P D    K     +  +     IPD W  +DIGP+++E     
Sbjct: 244 AKELLEKAKEKGVKIPLPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEI 303

Query: 126 ITKCK 130
           I   K
Sbjct: 304 IKDAK 308

Length = 389

>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D LI  G M+F  + A G+ +   L E+   + 
Sbjct: 188 ERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIEL 247

Query: 66  ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L++ A+ K + I+ P D     K       ++    GIPDGW  +DIGP+++E    
Sbjct: 248 AKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAE 307

Query: 125 TITKCK 130
            I K K
Sbjct: 308 VIRKAK 313

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients. . Length = 397

>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A+ K +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 326 ATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 385

Query: 125 TITKCK 130
            +   +
Sbjct: 386 ALDTTQ 391

Length = 481

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 16/198 (8%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
           D++  +     PL ++IG G G FL+ MA++  D NFLG+E++  +V    +     G+ 
Sbjct: 8   DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66

Query: 197 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 256
           N + +  +A            G L  V +  P+P   +  ++ R+ Q   ++  +++L  
Sbjct: 67  NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124

Query: 257 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 313
            G +  ++D E +   M +   E                T++   L  +        +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174

Query: 314 EQHVIDRGAPMYRLMLSK 331
           EQ     G P++ L   +
Sbjct: 175 EQRFERLGHPVFDLCFER 192

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP+AAI+GG  +  K   +  L  + D L+  G M F    A G  V   LVE+   D 
Sbjct: 191 KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ LI+ A+ K +++L P D        P+   ++ P+  IPDGW  +DIGP S++  + 
Sbjct: 251 ATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSE 310

Query: 125 TITKCK 130
            +   K
Sbjct: 311 ALDTTK 316

Length = 401

>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AI+GG  + +K   +  L  + D L+  G M++  + A G  V   LVE+   D 
Sbjct: 187 QRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDL 246

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI--FPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L+  A +K + +L P D    K    N  E    PS  IP+ W  +DIGP ++E   
Sbjct: 247 AKELLAKAEEKGVKLLLPVDSVVAK-EFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFA 305

Query: 124 STITKCK 130
             I   K
Sbjct: 306 KKIADAK 312

Length = 645

>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

 Score = 71.8 bits (177), Expect = 6e-14
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D LI  G M+   + A G  V   LVE    D 
Sbjct: 190 ERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDG 249

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
           A +L++ A+DK   I+ P D    K              IPD    +DIGP+++E     
Sbjct: 250 AKELLEKAKDK---IVLPVDVVVAK-EFSRDAPATVKLEIPDDLMILDIGPKTIELFAEI 305

Query: 126 ITKCKA 131
           I   K 
Sbjct: 306 IKGAKT 311

Length = 395

>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           ++P+ AI+GG  + +K   +  L  + D +I  G M+F     L  +P+   L ++    
Sbjct: 205 QRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAK 264

Query: 65  AASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
              ++++ A++K++ I  P DF C  K  +    ++     GIPDGW  +D GP+S+EE 
Sbjct: 265 IVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEF 324

Query: 123 TSTITKCK 130
              I + K
Sbjct: 325 AEAILRAK 332

Length = 417

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207
             V+D G+G+G FLL  AR   D   +G+E++ +     R  L L+G+     +      
Sbjct: 2   DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRV---VVG 58

Query: 208 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS---LVEAVSDLLVHDGKVFL 262
             R ++    G   LV     NP +       +  +      + A   LL   G + +
Sbjct: 59  DARELLELPDGSFDLV---LGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN 197
           V+DIG G G   + +AR        G++++ +++   R++ +L+    
Sbjct: 5   VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR 52

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
cd00318	397	Phosphoglycerate_kinase Phosphoglycerate kinase (P	100.0
PRK00073	389	pgk phosphoglycerate kinase; Provisional	100.0
COG0126	395	Pgk 3-phosphoglycerate kinase [Carbohydrate transp	100.0
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	100.0
PLN03034	481	phosphoglycerate kinase; Provisional	100.0
PLN02282	401	phosphoglycerate kinase	100.0
PF00162	384	PGK: Phosphoglycerate kinase; InterPro: IPR001576	100.0
PTZ00005	417	phosphoglycerate kinase; Provisional	99.98
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.98
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	99.97
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.97
KOG1367	416	consensus 3-phosphoglycerate kinase [Carbohydrate	99.97
COG2890	280	HemK Methylase of polypeptide chain release factor	99.96
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.96
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.95
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.94
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.94
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.93
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.92
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.92
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.92
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.91
KOG2904	328	consensus Predicted methyltransferase [General fun	99.9
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.89
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.87
PLN02672	1082	methionine S-methyltransferase	99.86
COG4123	248	Predicted O-methyltransferase [General function pr	99.75
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.73
KOG3115	249	consensus Methyltransferase-like protein [General	99.68
PRK07402	196	precorrin-6B methylase; Provisional	99.67
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.67
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.66
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.65
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.64
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.63
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.63
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.62
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.61
PRK14967	223	putative methyltransferase; Provisional	99.59
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.59
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.57
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.57
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.56
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.55
PRK14968	188	putative methyltransferase; Provisional	99.55
PLN02336	475	phosphoethanolamine N-methyltransferase	99.54
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.53
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.52
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.52
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.51
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.51
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.51
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.5
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.49
PRK04266	226	fibrillarin; Provisional	99.48
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
PLN02244	340	tocopherol O-methyltransferase	99.47
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.46
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.46
PLN02490	340	MPBQ/MSBQ methyltransferase	99.45
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.44
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.44
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.44
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.44
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.44
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.43
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.43
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.43
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.42
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.42
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.42
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.42
PHA03411	279	putative methyltransferase; Provisional	99.41
PRK11207	197	tellurite resistance protein TehB; Provisional	99.4
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.39
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.39
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.39
PHA03412	241	putative methyltransferase; Provisional	99.39
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.39
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.39
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.37
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.37
KOG1271	227	consensus Methyltransferases [General function pre	99.35
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.35
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.35
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.35
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.34
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.34
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.34
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.33
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.32
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.31
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.31
PLN02476	278	O-methyltransferase	99.28
COG4122	219	Predicted O-methyltransferase [General function pr	99.28
PRK06922	677	hypothetical protein; Provisional	99.28
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.28
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.27
PRK04457	262	spermidine synthase; Provisional	99.27
PRK12335	287	tellurite resistance protein TehB; Provisional	99.27
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.26
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.26
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.25
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.25
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.25
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.25
PRK08317	241	hypothetical protein; Provisional	99.24
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.23
PRK00811	283	spermidine synthase; Provisional	99.23
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.23
PTZ00146	293	fibrillarin; Provisional	99.23
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.22
PRK01581	374	speE spermidine synthase; Validated	99.21
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.21
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.2
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.2
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.19
TIGR03438	301	probable methyltransferase. This model represents	99.19
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.19
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.18
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.18
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.18
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.17
PLN03075	296	nicotianamine synthase; Provisional	99.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.17
TIGR00438	188	rrmJ cell division protein FtsJ.	99.16
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.16
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.15
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.14
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.14
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.14
PRK03612	521	spermidine synthase; Provisional	99.13
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.11
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.11
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.1
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.09
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.09
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.09
PLN02366	308	spermidine synthase	99.09
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.09
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.08
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.08
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.08
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.07
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.07
PRK05785	226	hypothetical protein; Provisional	99.06
KOG4300	252	consensus Predicted methyltransferase [General fun	99.06
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.06
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.03
PLN02336	475	phosphoethanolamine N-methyltransferase	99.0
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.99
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.99
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.99
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.98
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.96
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.96
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.96
PRK06202	232	hypothetical protein; Provisional	98.93
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.93
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.92
KOG2899	288	consensus Predicted methyltransferase [General fun	98.92
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.89
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.86
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.85
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.85
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.84
PLN02823	336	spermine synthase	98.81
KOG2361	264	consensus Predicted methyltransferase [General fun	98.8
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.77
KOG3010	261	consensus Methyltransferase [General function pred	98.74
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.73
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.73
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.73
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.72
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.71
COG2521	287	Predicted archaeal methyltransferase [General func	98.71
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.71
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.69
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.69
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.67
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.66
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.65
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.65
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.63
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.63
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.61
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.59
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.58
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.58
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.58
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.54
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.53
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.53
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.51
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.5
COG2520	341	Predicted methyltransferase [General function pred	98.48
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.47
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.45
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.44
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.43
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.4
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.38
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.37
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.34
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.32
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.31
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.27
PRK04148	134	hypothetical protein; Provisional	98.27
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.2
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.19
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.18
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.18
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.17
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.17
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.16
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.13
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.12
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.1
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.9
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.88
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.82
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.82
PF13679	141	Methyltransf_32: Methyltransferase domain	97.82
KOG2730	263	consensus Methylase [General function prediction o	97.82
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.82
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.79
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.77
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.72
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.7
COG4076	252	Predicted RNA methylase [General function predicti	97.69
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.69
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.62
PRK00536	262	speE spermidine synthase; Provisional	97.54
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.53
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.52
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.51
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.5
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.48
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.47
COG0286	489	HsdM Type I restriction-modification system methyl	97.43
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.42
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.4
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.34
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.33
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.3
PRK10742	250	putative methyltransferase; Provisional	97.3
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.29
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.22
COG3897	218	Predicted methyltransferase [General function pred	97.2
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.1
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.1
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.04
KOG2940	325	consensus Predicted methyltransferase [General fun	97.03
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.83
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.81
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.78
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.7
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.67
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.49
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.47
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.31
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.18
KOG2912	419	consensus Predicted DNA methylase [Function unknow	96.17
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.16
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.16
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.14
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.1
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.99
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.94
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.85
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.7
COG1568	354	Predicted methyltransferases [General function pre	95.65
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	95.64
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.63
KOG1331	293	consensus Predicted methyltransferase [General fun	95.44
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.38
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.33
PRK11524	284	putative methyltransferase; Provisional	95.19
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.08
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.07
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.04
COG4798	238	Predicted methyltransferase [General function pred	95.03
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.64
PRK13699	227	putative methylase; Provisional	94.55
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	94.55
PRK11524	284	putative methyltransferase; Provisional	94.44
PHA01634	156	hypothetical protein	94.17
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.01
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.89
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.82
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	93.54
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	93.42
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.28
COG4301	321	Uncharacterized conserved protein [Function unknow	93.09
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.08
KOG2078	495	consensus tRNA modification enzyme [RNA processing	92.93
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.71
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	92.61
PRK13699	227	putative methylase; Provisional	92.41
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.39
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.3
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	92.2
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	91.71
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.43
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.7
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.5
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.88
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.01
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	87.7
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	87.45
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	87.01
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	86.33
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	85.99
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	85.77
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	85.69
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	85.48
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	85.07
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	83.1
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	83.06
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	82.39
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	82.05
PRK03659	601	glutathione-regulated potassium-efflux system prot	81.91
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	81.65
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	81.63
COG1565	370	Uncharacterized conserved protein [Function unknow	80.33

>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

Probab=100.00  E-value=4.8e-34  Score=267.26  Aligned_cols=159  Identities=28%  Similarity=0.499  Sum_probs=138.8

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||++|+||+++||++|+||+||||||+|+|++||++++|++.++.|+++++++++++++|.
T Consensus       184 l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~  263 (397)
T cd00318         184 LENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIV  263 (397)
T ss_pred             HcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++++.|. +.+.++.+...||.+||++||||+|.+.|.+.+.+++    ||+||||++--+.+   -.-.||=.+
T Consensus       264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----tI~wNGP~GvfE~~---~F~~GT~~l  336 (397)
T cd00318         264 LPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAK----TIVWNGPMGVFEFP---AFAKGTKAI  336 (397)
T ss_pred             CCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCC----EEEEECCCcCccCC---cccHHHHHH
Confidence            999999996642 3344566788999999999999999999999999999    99999997542222   223455556


Q ss_pred             HHHHHHh
Q 019743          161 LLGMARK  167 (336)
Q Consensus       161 ~~~la~~  167 (336)
                      +.++|+.
T Consensus       337 ~~aia~~  343 (397)
T cd00318         337 ADAIAAA  343 (397)
T ss_pred             HHHHHHh
Confidence            6667764

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.

>PRK00073 pgk phosphoglycerate kinase; Provisional

Probab=100.00  E-value=7.8e-34  Score=265.21  Aligned_cols=166  Identities=27%  Similarity=0.458  Sum_probs=143.9

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+|++++||++|+||+||||||+|+|++||++++|++.++.|+++++++++++++|.
T Consensus       180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~  259 (389)
T PRK00073        180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP  259 (389)
T ss_pred             hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHH
Q 019743           82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFL  161 (336)
Q Consensus        82 ~Pvd~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~  161 (336)
                      +|+|+++.++|.+....+.+...||.+|+++||||+|.+.|.+.+.+++    ||+||||++--+.+   ....||=.++
T Consensus       260 lPvD~vv~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----ti~wNGP~GvfE~~---~F~~GT~~l~  332 (389)
T PRK00073        260 LPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAK----TIVWNGPMGVFEFE---NFAKGTKAVA  332 (389)
T ss_pred             CCCeeEEeeccCCCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCC----EEEEECCCCccccc---cchHHHHHHH
Confidence            9999999876544445566788899999999999999999999999999    99999997543222   2345666666


Q ss_pred             HHHHHhCCCCeEEE
Q 019743          162 LGMARKRKDLNFLG  175 (336)
Q Consensus       162 ~~la~~~p~~~v~g  175 (336)
                      .++|+.. ...++|
T Consensus       333 ~aia~~~-a~sivG  345 (389)
T PRK00073        333 KAIAEST-AFSIIG  345 (389)
T ss_pred             HHHHhcC-CeEEEc
Confidence            6666643 455665

>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.9e-34  Score=262.38  Aligned_cols=162  Identities=27%  Similarity=0.415  Sum_probs=136.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+|+|||||||+|||+||+||+++||++|+||+|+||||+|+|+++|++++|.+.++.|++|++++++   +|.
T Consensus       186 l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I~  262 (395)
T COG0126         186 LENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD---KIV  262 (395)
T ss_pred             hcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhCC---cEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999887654   899


Q ss_pred             ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++++.|. +....+.+  .||.+||++||||+|.+.|++.++.++    ||+||||.+--+   +=....||=.+
T Consensus       263 lPvD~~v~~~f~~~~~~~~~~--~i~~~~~~lDIGp~Ti~~~~~~i~~Ak----tivwNGP~GVfE---~~~Fa~GT~~v  333 (395)
T COG0126         263 LPVDVVVAKEFSRDAPATVKL--EIPDDLMILDIGPKTIELFAEIIKGAK----TIVWNGPMGVFE---FENFAKGTEEV  333 (395)
T ss_pred             CcceeEEcccccccccccccc--CCCCCccccccCHHHHHHHHHHHhhCC----EEEEeCCcccee---cchhhhhHHHH
Confidence            999999997753 33333433  899999999999999999999999999    999999975321   22345677777


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+......|+|
T Consensus       334 ~~aia~~~~a~SiiG  348 (395)
T COG0126         334 AKAIAKSSGAFSIIG  348 (395)
T ss_pred             HHHHHhcCCCeEEEC
Confidence            777777522345554

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=100.00  E-value=2.1e-32  Score=236.99  Aligned_cols=187  Identities=27%  Similarity=0.532  Sum_probs=153.4

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      .+.|...|++ ..+.+||||||.|.+++.+|+++|+.+++|+|++...+..|.+++.+.+++|+.++++|+...++.++ 
T Consensus         7 ~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~-   84 (195)
T PF02390_consen    7 PLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF-   84 (195)
T ss_dssp             TTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-
T ss_pred             ccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-
Confidence            6778888876 36699999999999999999999999999999999999999999999999999999999998878777 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc--CCcceeeecccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY--GKGKLVLVQDEC  292 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~d~~  292 (336)
                       +|.+++.++++|||||++.+|+++|++.+.|++.+.++|+|||.+++.||+..|++++.+.+.++  +|.......+ +
T Consensus        85 -~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~-~  162 (195)
T PF02390_consen   85 -PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDD-L  162 (195)
T ss_dssp             -TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESS-G
T ss_pred             -cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCcc-c
Confidence             57899999999999999999999999999999999999999999999999999999999999995  4543322222 1


Q ss_pred             ccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 019743          293 DTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  332 (336)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~  332 (336)
                          +.   ..-....+.|+||++|.++|.+||+++|+|.
T Consensus       163 ----~~---~~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~  195 (195)
T PF02390_consen  163 ----HE---SPFDDDYIPTKYERKWLAEGKPIYRLIFKKV  195 (195)
T ss_dssp             ----GC---SCCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred             ----cc---CCCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence                10   0111257899999999999999999999984

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN03034 phosphoglycerate kinase; Provisional

Probab=100.00  E-value=1.7e-33  Score=266.39  Aligned_cols=158  Identities=28%  Similarity=0.494  Sum_probs=138.5

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|+||+||+|||++|+||+++||++|+||+|+||||.|+|++||++++|++.++.|++|+++++++|++|.
T Consensus       262 ~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~  341 (481)
T PLN03034        262 VSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLL  341 (481)
T ss_pred             HcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++.+.|. +.+..+.+...||.+||++||||+|.+.|.+.+++++    ||+||||++--+.+   ...-||=.+
T Consensus       342 lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~ak----TI~WNGPmGvFE~~---~Fa~GT~~l  414 (481)
T PLN03034        342 LPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQ----TVIWNGPMGVFEFE---KFAVGTEAV  414 (481)
T ss_pred             CCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCC----EEEEECCcccccCC---cchHHHHHH
Confidence            999999997642 3344555778899999999999999999999999999    99999997532211   234466566


Q ss_pred             HHHHHH
Q 019743          161 LLGMAR  166 (336)
Q Consensus       161 ~~~la~  166 (336)
                      +..+++
T Consensus       415 ~~aia~  420 (481)
T PLN03034        415 AKKLAE  420 (481)
T ss_pred             HHHHHH
Confidence            666666

>PLN02282 phosphoglycerate kinase

Probab=100.00  E-value=1.6e-33  Score=263.75  Aligned_cols=168  Identities=28%  Similarity=0.461  Sum_probs=143.0

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|+|||||+|||.+|+|++++||++|+||+||||||+|+|++||++++|++.++.|++++++++++|++|.
T Consensus       187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~  266 (401)
T PLN02282        187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL  266 (401)
T ss_pred             hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++.+.|. +.+..+.+...||.+|+++||||+|.+.|.+.+++++    ||+||||++--+.+   ..--||=.+
T Consensus       267 lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----tI~wNGP~GvfE~~---~F~~GT~~l  339 (401)
T PLN02282        267 LPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTK----TIIWNGPMGVFEFE---KFAAGTEAI  339 (401)
T ss_pred             CCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCC----EEEEECCcCCccCc---chhHHHHHH
Confidence            999999997652 2234555788899999999999999999999999999    99999997532211   234566677


Q ss_pred             HHHHHHhC-C-CCeEEEE
Q 019743          161 LLGMARKR-K-DLNFLGL  176 (336)
Q Consensus       161 ~~~la~~~-p-~~~v~gi  176 (336)
                      +.++|+.. + ...++|=
T Consensus       340 ~~aia~~t~~~a~sivGG  357 (401)
T PLN02282        340 AKKLAELSGKGVTTIIGG  357 (401)
T ss_pred             HHHHHHhhcCCCEEEEeC
Confidence            77777632 2 3345553

>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2

Probab=100.00  E-value=4.3e-33  Score=260.88  Aligned_cols=166  Identities=28%  Similarity=0.522  Sum_probs=137.5

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|+|||||+|||++|+|++++||++|+||+||||||+|+|+++|+++++++.++.|++++++++++|++|.
T Consensus       184 ~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~  263 (384)
T PF00162_consen  184 LENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIV  263 (384)
T ss_dssp             HHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE
T ss_pred             hcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHHHHhcCceEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++...| .+.+.++.+...||.+|+++||||+|.+.|.+.+..++    ||+||||++--+.+   ..--||=.+
T Consensus       264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----tv~wNGP~GvfE~~---~F~~GT~~l  336 (384)
T PF00162_consen  264 LPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAK----TVFWNGPMGVFEIE---NFAEGTRAL  336 (384)
T ss_dssp             --SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-S----EEEEES-SS-TTSG---GGCHHHHHH
T ss_pred             EEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCC----eEEEECCcccCchh---hhhHHHHHH
Confidence            99999999774 45566777889999999999999999999999999999    99999997643222   224466667


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+. ....++|
T Consensus       337 ~~aia~~-~a~sivG  350 (384)
T PF00162_consen  337 AKAIAKS-GAFSIVG  350 (384)
T ss_dssp             HHHHHHH-TSEEEEE
T ss_pred             HHHHHhc-CCeEEEc
Confidence            7777777 3345665

7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....

>PTZ00005 phosphoglycerate kinase; Provisional

Probab=99.98  E-value=2.8e-32  Score=256.49  Aligned_cols=168  Identities=26%  Similarity=0.517  Sum_probs=140.6

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHH-cCCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a-~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|+|||||+|||.+|+||+++||++|+||+|+|+||+| .|++||++++|++.++.|++++++++++|++|
T Consensus       201 ~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I  280 (417)
T PTZ00005        201 LENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKI  280 (417)
T ss_pred             hcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence            57899999999999999999999999999999999999999999999 68999999999999999999999999999999


Q ss_pred             eccceeeeeccCC--CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIHH--PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~~--~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++.+.|.  +....+.+...||.+||++||||+|.+.|.+.++.++    ||+||||++--+.+   ..--||=
T Consensus       281 ~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----TV~wNGP~GvFE~~---~F~~GT~  353 (417)
T PTZ00005        281 HLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAK----TIVWNGPQGVFEMP---NFAKGSI  353 (417)
T ss_pred             eCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCC----EEEEECCCccccCC---cchHHHH
Confidence            9999999986542  3323333566799999999999999999999999999    99999998632222   2345666


Q ss_pred             HHHHHHHHhC-C-CCeEEEE
Q 019743          159 LFLLGMARKR-K-DLNFLGL  176 (336)
Q Consensus       159 ~~~~~la~~~-p-~~~v~gi  176 (336)
                      .++.++|+.. . ...++|=
T Consensus       354 ~i~~aia~~t~~~a~sivGG  373 (417)
T PTZ00005        354 AMLDAVVKATEKGAITIVGG  373 (417)
T ss_pred             HHHHHHHHhccCCCEEEEeC
Confidence            6666677632 2 2355553

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.98  E-value=6.6e-31  Score=231.08  Aligned_cols=189  Identities=26%  Similarity=0.361  Sum_probs=162.0

Q ss_pred             cccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC
Q 019743          136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS  215 (336)
Q Consensus       136 i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn  215 (336)
                      ..|...|+++..+.+||||||+|.+.+.+|+++|+.+++|||+....+..|.+.+.+.+++|+.+++.|+...++.++  
T Consensus        38 ~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~--  115 (227)
T COG0220          38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI--  115 (227)
T ss_pred             chHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC--
Confidence            345566666556899999999999999999999999999999999999999999999999999999999999888876  


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccc
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTK  295 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~  295 (336)
                      |+++++.|+++|||||+|.+|+++|++++.|++.+.+.|+|||.+++.||+.+|++++.....+..+.......|.+   
T Consensus       116 ~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~---  192 (227)
T COG0220         116 PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLH---  192 (227)
T ss_pred             CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccc---
Confidence            56699999999999999999999999999999999999999999999999999999954444455444333333311   


Q ss_pred             cCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          296 TNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       296 ~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                        .  |....+..+.|+||+++.+.|.+|+++.+++..
T Consensus       193 --~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~  226 (227)
T COG0220         193 --Y--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK  226 (227)
T ss_pred             --c--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence              1  234445678899999999999999999999875

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=99.97  E-value=8.9e-32  Score=266.08  Aligned_cols=139  Identities=29%  Similarity=0.527  Sum_probs=129.3

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||++|+||+++||++|+||+||||||+|+|++||++++|++.++.|+++++++++++++|.
T Consensus       183 l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~  262 (645)
T PRK13962        183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLL  262 (645)
T ss_pred             HcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCC
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHD  144 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~  144 (336)
                      +|+|+++.+.| .+.+..+.+...||.+||++||||+|.+.|.+.+.+++    ||+||||++-
T Consensus       263 lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----ti~wNGP~Gv  322 (645)
T PRK13962        263 LPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAK----TIVWNGPMGV  322 (645)
T ss_pred             CCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCC----EEEEECCCcc
Confidence            99999998764 23444555778899999999999999999999999998    9999999754

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.97  E-value=1.2e-29  Score=220.44  Aligned_cols=183  Identities=22%  Similarity=0.389  Sum_probs=155.6

Q ss_pred             cccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC
Q 019743          136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS  215 (336)
Q Consensus       136 i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn  215 (336)
                      ..|+..|++ +.+++||||||+|.++..+|+++|+.+++|+|+|+++++.|++++...++.|++++++|+.+..+..+  
T Consensus         7 ~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~--   83 (194)
T TIGR00091         7 PDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF--   83 (194)
T ss_pred             CCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC--
Confidence            346666654 46899999999999999999999999999999999999999999999888999999999987644444  


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccceeeecccccc
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECDT  294 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~d~~~~  294 (336)
                      |+.+++.+++++|+||++.+|+++|+..+.+++++.++|||||.+++.++...+.+++.+.+.+++ |.......| +  
T Consensus        84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~-~--  160 (194)
T TIGR00091        84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD-L--  160 (194)
T ss_pred             CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc-c--
Confidence            455789999999999999888888899999999999999999999999999999999999998887 654433333 1  


Q ss_pred             ccCCCCCCCCCC---CCCCCHHHHHHHHcCCCeEEEEEEeC
Q 019743          295 KTNQGGWLGENS---FGVRSDWEQHVIDRGAPMYRLMLSKP  332 (336)
Q Consensus       295 ~~~~~~~~~~~~---~~~~t~~e~~~~~~G~~i~~~~~~~~  332 (336)
                              ...+   ..+.|+||++|.++|.+||+++|+|.
T Consensus       161 --------~~~~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~  193 (194)
T TIGR00091       161 --------NNSPLSRPRNMTEYEQRFERLGHPVFDLCFERL  193 (194)
T ss_pred             --------CCCcccccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence                    1222   23469999999999999999999986

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.8e-31  Score=233.05  Aligned_cols=159  Identities=25%  Similarity=0.485  Sum_probs=134.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHc-CCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~-g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|.|||.+||||+||+|||++|+|||+++|.+|+||+|++|||++. |+.||+|++|++..+.+++|++++++++.+|
T Consensus       199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i  278 (416)
T KOG1367|consen  199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI  278 (416)
T ss_pred             HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence            579999999999999999999999999999999999999999999999 6999999999999999999999999999999


Q ss_pred             eccceeeeeccC-CCCC-eeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH-HPNQ-VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~-~~~~-~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++++.| .+.. -.++....||++||.+|+||+|.+.++..+.+++    +|+||||.+--+..   -...||=
T Consensus       279 ~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k~fa~~v~~aK----tIvWNGP~GvfE~~---~Fa~GTe  351 (416)
T KOG1367|consen  279 LLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIKMFAEAVATAK----TIVWNGPPGVFEFE---KFAAGTE  351 (416)
T ss_pred             EeeeeeeeeccccCccccceeccccCCCCCccccccChHHHHHHHHHHhhhh----EEEecCCCcccchh---hhhhhHH
Confidence            999999999775 2222 2344345799999999999999999999999999    99999985321111   1244565


Q ss_pred             HHHHHHHHh
Q 019743          159 LFLLGMARK  167 (336)
Q Consensus       159 ~~~~~la~~  167 (336)
                      .+.-.+.+.
T Consensus       352 al~d~~v~~  360 (416)
T KOG1367|consen  352 ALMDALVKL  360 (416)
T ss_pred             HHHHHHHHH
Confidence            565555554

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.6e-28  Score=223.98  Aligned_cols=205  Identities=14%  Similarity=0.196  Sum_probs=161.2

Q ss_pred             ccCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccc
Q 019743           58 VEKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDI  136 (336)
Q Consensus        58 ~~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i  136 (336)
                      ++++..+...+++++. ..++    |++|+++.. |+|.++.+.+.+.||        +|+|+.+++.++.....     
T Consensus        48 ~~~~~~~~~~~~~~rr-~~~~----P~~yi~g~~~f~gl~~~v~~~vliP--------r~dTe~Lve~~l~~~~~-----  109 (280)
T COG2890          48 LSEEELERLRELLERR-AEGE----PVAYILGSAEFGGLRFKVDEGVLIP--------RPDTELLVEAALALLLQ-----  109 (280)
T ss_pred             cCHHHHHHHHHHHHHH-HCCC----CHhHhhccCeecceeeeeCCCceec--------CCchHHHHHHHHHhhhh-----
Confidence            4444566667777774 4454    999999988 999999999999999        69999999987632220     


Q ss_pred             ccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhh
Q 019743          137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSI  212 (336)
Q Consensus       137 ~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~i  212 (336)
                               ...+|||||||||++++.+|++.|+++|+|+|+|+.|++.|++|+..+++.++.++++|++.    .||.|
T Consensus       110 ---------~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlI  180 (280)
T COG2890         110 ---------LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLI  180 (280)
T ss_pred             ---------cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEE
Confidence                     11179999999999999999999999999999999999999999999998888888889876    48999


Q ss_pred             hcCCCCeEEEEEeeCCCCCCCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccce
Q 019743          213 VASYPGKLILVSIQCPNPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKL  285 (336)
Q Consensus       213 vsnpp~~~d~i~~~~~dp~~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~  285 (336)
                      +|||||.........+......++      .....++++|+.++.++|+|||.+.+++++ ++.+.+.+++.+.+ |..+
T Consensus       181 VsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~~~~~~~~~~~v  259 (280)
T COG2890         181 VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKALFEDTGFFEIV  259 (280)
T ss_pred             EeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHHHHHhcCCceEE
Confidence            999999765411111111001111      112346899999999999999999999986 56899999999999 5656


Q ss_pred             eeecc
Q 019743          286 VLVQD  290 (336)
Q Consensus       286 ~~~~d  290 (336)
                      ...+|
T Consensus       260 ~~~~d  264 (280)
T COG2890         260 ETLKD  264 (280)
T ss_pred             EEEec
Confidence            66666

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.96  E-value=2.7e-27  Score=222.01  Aligned_cols=169  Identities=19%  Similarity=0.318  Sum_probs=148.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +++.+||||||+|.+++.+|+++|+.+++|+|+++.+++.|.+++..++++|+.++++|+...++ .+  |+.++|.+++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~--~~~s~D~I~l  198 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL--PSNSVEKIFV  198 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC--CCCceeEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999976543 23  6788999999


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN  305 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~  305 (336)
                      +||+||++.+|  +|++.+.+++++.++|+|||.+.+.||+.+|++++.+.+.+.+.......              ...
T Consensus       199 nFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~--------------~~~  262 (390)
T PRK14121        199 HFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIK--------------KNA  262 (390)
T ss_pred             eCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecc--------------cCC
Confidence            99999998876  68889999999999999999999999999999999999988754322111              123


Q ss_pred             CCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          306 SFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       306 ~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                      +..+.|+||++|.++|.+||++.|++..
T Consensus       263 ~~~i~TkyE~r~~~~G~~Iy~l~~~~~~  290 (390)
T PRK14121        263 QLEVSSKYEDRWKKQNKDIYDLRIYNLE  290 (390)
T ss_pred             CCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence            4477899999999999999999999875

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.95  E-value=4.8e-27  Score=221.55  Aligned_cols=201  Identities=16%  Similarity=0.166  Sum_probs=159.6

Q ss_pred             cCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccc
Q 019743           59 EKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDID  137 (336)
Q Consensus        59 ~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~  137 (336)
                      +++..+..++++++. ..|+    |++||+|.. |+|.++.+.+.+.+|        +|+|+..++.++....       
T Consensus       191 ~~~~~~~~~~~v~RR-~~ge----PlqYIlG~~~F~G~~f~V~p~vLIP--------RpeTE~LVe~aL~~l~-------  250 (423)
T PRK14966        191 PDEVRQRADRLAQRR-LNGE----PVAYILGVREFYGRRFAVNPNVLIP--------RPETEHLVEAVLARLP-------  250 (423)
T ss_pred             CHHHHHHHHHHHHHH-HcCC----CceeEeeeeeecCcEEEeCCCccCC--------CccHHHHHHHhhhccC-------
Confidence            333456677777774 3454    999999998 999999999999998        5999999998876422       


Q ss_pred             cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-------HHH
Q 019743          138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-------TFR  210 (336)
Q Consensus       138 ~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-------~~d  210 (336)
                              +..++||+|||||++++.+++..|+.+++|+|+|+.|++.|++|++.++. ++.++++|+.+       .||
T Consensus       251 --------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FD  321 (423)
T PRK14966        251 --------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWD  321 (423)
T ss_pred             --------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCcc
Confidence                    23589999999999999999999999999999999999999999988775 79999999843       389


Q ss_pred             hhhcCCCCeEEEEEeeCCCCCCC-cch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          211 SIVASYPGKLILVSIQCPNPDFN-RPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       211 ~ivsnpp~~~d~i~~~~~dp~~~-~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      .|+|||||...... ....+..+ .++      .....+++++++.+.+.|+|||.++++++. ++.+.+.+++.+.||.
T Consensus       322 LIVSNPPYI~~~e~-~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~  399 (423)
T PRK14966        322 IIVSNPPYIENGDK-HLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFS  399 (423)
T ss_pred             EEEECCCCCCcchh-hhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCc
Confidence            99999999643211 11111100 000      112245789999999999999999999987 6789999999999998


Q ss_pred             ceeeecc
Q 019743          284 KLVLVQD  290 (336)
Q Consensus       284 ~~~~~~d  290 (336)
                      .+++.+|
T Consensus       400 ~v~v~kD  406 (423)
T PRK14966        400 GVETLPD  406 (423)
T ss_pred             EEEEEEc
Confidence            8888877

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.94  E-value=1.5e-26  Score=227.36  Aligned_cols=218  Identities=14%  Similarity=0.135  Sum_probs=163.2

Q ss_pred             cCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCC---Cc
Q 019743           59 EKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAF---PF  134 (336)
Q Consensus        59 ~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~---~~  134 (336)
                      +++..+..++++++.. .|+    |++||+|+. |+|.+|.|.+.++||        +|||+.+++.+++..+..   +.
T Consensus        52 ~~~~~~~~~~~~~rr~-~~e----PlqYI~G~~~F~g~~f~V~~~VLIP--------RpeTE~Lve~~l~~~~~~~~~~~  118 (506)
T PRK01544         52 NEAEIEAFEKLLERRL-KHE----PIAYITGVKEFYSREFIVNKHVLIP--------RSDTEVLVDVVFQCHSRESGNPE  118 (506)
T ss_pred             CHHHHHHHHHHHHHHH-cCC----CHHHHhCcCEEcCcEEEeCCCcccC--------CCcHHHHHHHHHHHhhhcccccc
Confidence            3344667788888743 454    999999998 999999999999999        599999999888654310   00


Q ss_pred             ----cccccc----ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecch
Q 019743          135 ----DIDWSA----AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNA  205 (336)
Q Consensus       135 ----~i~~~g----~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~  205 (336)
                          ....++    .....+..+|||+|||||++++.+++..|+++++|+|+|+.|++.|++|++.+++. ++.++++|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~  198 (506)
T PRK01544        119 KKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW  198 (506)
T ss_pred             ccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch
Confidence                001110    00011235899999999999999999999999999999999999999999988874 699999998


Q ss_pred             hH-----HHHhhhcCCCCeEEEEEeeC-C-----CCCCCc-chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH
Q 019743          206 TS-----TFRSIVASYPGKLILVSIQC-P-----NPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  273 (336)
Q Consensus       206 ~~-----~~d~ivsnpp~~~d~i~~~~-~-----dp~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  273 (336)
                      .+     .||.++|||||......... +     +|.... .......+++++++.+.++|+|||.++++++. .+.+.+
T Consensus       199 ~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v  277 (506)
T PRK01544        199 FENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAV  277 (506)
T ss_pred             hhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHH
Confidence            64     48999999999643211110 0     111000 00112345789999999999999999999986 578899


Q ss_pred             HHHHHHcCCcceeeecc
Q 019743          274 KQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       274 ~~~l~~~g~~~~~~~~d  290 (336)
                      .+++.+.||..+.+.+|
T Consensus       278 ~~~~~~~g~~~~~~~~D  294 (506)
T PRK01544        278 TQIFLDHGYNIESVYKD  294 (506)
T ss_pred             HHHHHhcCCCceEEEec
Confidence            99999999988877777

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.94  E-value=3.4e-26  Score=210.25  Aligned_cols=205  Identities=14%  Similarity=0.127  Sum_probs=158.5

Q ss_pred             CCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccc
Q 019743           60 KGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDW  138 (336)
Q Consensus        60 ~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~  138 (336)
                      ++..+..++++++.. .|    .|++|++|.. |+|.+|.+.+.+.||        +|+|+.++..++.....       
T Consensus        52 ~~~~~~~~~~~~~r~-~~----~pl~yi~g~~~f~g~~f~v~~~vliP--------r~ete~lv~~~l~~~~~-------  111 (284)
T TIGR00536        52 PDEKERIFRLVLRRV-KG----VPVAYLLGSKEFYGLEFFVNEHVLIP--------RPETEELVEKALASLIS-------  111 (284)
T ss_pred             HHHHHHHHHHHHHHH-cC----CCHHHHhCcceEcCeEEEECCCCcCC--------CCccHHHHHHHHHHhhh-------
Confidence            334556677777743 34    4999999988 999999999999999        59999999988764220       


Q ss_pred             ccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH-----HHHhh
Q 019743          139 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS-----TFRSI  212 (336)
Q Consensus       139 ~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~-----~~d~i  212 (336)
                           .....+|||+|||||++++.+++..|+.+++|+|+|+++++.|++|++.++..+ +.++++|+.+     .||.+
T Consensus       112 -----~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlI  186 (284)
T TIGR00536       112 -----QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDII  186 (284)
T ss_pred             -----cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEE
Confidence                 111258999999999999999999999999999999999999999999988864 9999999864     48999


Q ss_pred             hcCCCCeEEEEEeeCCCCCCCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHH-HcCCcce
Q 019743          213 VASYPGKLILVSIQCPNPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKL  285 (336)
Q Consensus       213 vsnpp~~~d~i~~~~~dp~~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~-~~g~~~~  285 (336)
                      ++||||.........+......++      .....+++++++++.++|+|||.+++++++ ++.+.+.+++. ..+|..+
T Consensus       187 vsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~~~~~~~~~~~~~~  265 (284)
T TIGR00536       187 VSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSLKELLRIKFTWYDV  265 (284)
T ss_pred             EECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHhcCCCcee
Confidence            999999743221111111111111      112236889999999999999999999986 56788888887 4688877


Q ss_pred             eeecc
Q 019743          286 VLVQD  290 (336)
Q Consensus       286 ~~~~d  290 (336)
                      .+.+|
T Consensus       266 ~~~~D  270 (284)
T TIGR00536       266 ENGRD  270 (284)
T ss_pred             EEecC
Confidence            78877

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.93  E-value=4e-25  Score=202.75  Aligned_cols=202  Identities=12%  Similarity=0.150  Sum_probs=153.6

Q ss_pred             ccCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccc
Q 019743           58 VEKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDI  136 (336)
Q Consensus        58 ~~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i  136 (336)
                      ++++..+..++++++....++    |++|++|+. |+|.++.|.+.+.||        +|+|+..+...+.....     
T Consensus        56 ~~~~~~~~~~~~~~rr~~~~~----Pl~yi~g~~~f~g~~f~v~~~vlip--------r~~te~lv~~~l~~~~~-----  118 (284)
T TIGR03533        56 LTPSEKERILELIERRIEERI----PVAYLTNEAWFAGLEFYVDERVLIP--------RSPIAELIEDGFAPWLE-----  118 (284)
T ss_pred             CCHHHHHHHHHHHHHHHhCCC----cHHHHcCCCeecCcEEEECCCCccC--------CCchHHHHHHHHHHHhc-----
Confidence            334445667777777543444    999999998 999999999999898        59999999887753210     


Q ss_pred             ccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-----HHH
Q 019743          137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-----TFR  210 (336)
Q Consensus       137 ~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-----~~d  210 (336)
                             .....+|||+|||||++++.+++..|+.+++|+|+|+.+++.|++|++.+++. ++.++++|+.+     .||
T Consensus       119 -------~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD  191 (284)
T TIGR03533       119 -------PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYD  191 (284)
T ss_pred             -------cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCcc
Confidence                   01245899999999999999999999999999999999999999999998874 69999999853     489


Q ss_pred             hhhcCCCCeEEEEEeeCCCCCCCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          211 SIVASYPGKLILVSIQCPNPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       211 ~ivsnpp~~~d~i~~~~~dp~~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      .+++||||.........+......++      .....+++.+++.+.++|+|||+++++++. ++ +.+.+.+.+++|..
T Consensus       192 ~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~~~~~~  269 (284)
T TIGR03533       192 LIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPDVPFTW  269 (284)
T ss_pred             EEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHhCCCce
Confidence            99999999633211111111100111      011235789999999999999999999986 44 68889999888764


Q ss_pred             e
Q 019743          285 L  285 (336)
Q Consensus       285 ~  285 (336)
                      .
T Consensus       270 ~  270 (284)
T TIGR03533       270 L  270 (284)
T ss_pred             e
Confidence            3

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.92  E-value=2.6e-24  Score=199.19  Aligned_cols=200  Identities=14%  Similarity=0.185  Sum_probs=149.7

Q ss_pred             chHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccccc
Q 019743           62 ANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSA  140 (336)
Q Consensus        62 ~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g  140 (336)
                      ..+...+++++....|+    |++||+|+. |+|.++.|.+.+.||        +|+|++.+...+.....         
T Consensus        72 ~~~~~~~~~~rr~~~~~----Pl~yi~g~~~F~g~~f~v~~~vlip--------r~~te~lv~~~l~~~~~---------  130 (307)
T PRK11805         72 EKARILELIERRINERI----PAAYLTNEAWFCGLEFYVDERVLVP--------RSPIAELIEDGFAPWLE---------  130 (307)
T ss_pred             HHHHHHHHHHHHHHCCc----cHHHHcCcceEcCcEEEECCCCcCC--------CCchHHHHHHHHHHHhc---------
Confidence            35566677777432355    999999998 999999999999998        59999998887653210         


Q ss_pred             ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-----HHHhhhc
Q 019743          141 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-----TFRSIVA  214 (336)
Q Consensus       141 ~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-----~~d~ivs  214 (336)
                         .....+|||+|||||++++.+++..|+.+++|+|+|+.+++.|++|++.+++. +++++++|+.+     .||.+++
T Consensus       131 ---~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvs  207 (307)
T PRK11805        131 ---DPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVS  207 (307)
T ss_pred             ---cCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEE
Confidence               00125799999999999999999999999999999999999999999998875 59999999854     4899999


Q ss_pred             CCCCeEEEEEeeCC-----CCCCCc-chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          215 SYPGKLILVSIQCP-----NPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       215 npp~~~d~i~~~~~-----dp~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ||||.........+     +|.... .......+++.+++.+.++|+|||+++++++.. + +.+.+.+...++.....
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~-~~~~~~~~~~~~~~~~~  284 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R-VHLEEAYPDVPFTWLEF  284 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H-HHHHHHHhhCCCEEEEe
Confidence            99996422111111     111000 001112457899999999999999999999864 3 35888888777654433

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.92  E-value=4.3e-24  Score=210.05  Aligned_cols=168  Identities=18%  Similarity=0.238  Sum_probs=143.2

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      .+.+.+.|+. +.+.+||||||.|.+++.+|+.+|+.+++|+|++...+..|.+.+...+++|+.+++.|+... ...+ 
T Consensus       337 ~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~-  413 (506)
T PRK01544        337 LFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI-LNDL-  413 (506)
T ss_pred             CCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhc-
Confidence            3445555654 578999999999999999999999999999999999999999999999999999999887554 3335 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccceeeeccccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECD  293 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~d~~~  293 (336)
                       |+.+++.++++|||||+|++|+++|++.+.|++.+.+.|+|||.+++.||+.+|++++.+.+.+++ |...  ..+.  
T Consensus       414 -~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~--~~~~--  488 (506)
T PRK01544        414 -PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII--NKND--  488 (506)
T ss_pred             -CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec--cccc--
Confidence             678899999999999999999999999999999999999999999999999999999999999887 5432  1121  


Q ss_pred             cccCCCCCCCCCCCCCCCHHHHHH
Q 019743          294 TKTNQGGWLGENSFGVRSDWEQHV  317 (336)
Q Consensus       294 ~~~~~~~~~~~~~~~~~t~~e~~~  317 (336)
                             |....+..+.|+||+|.
T Consensus       489 -------~~~~~~~~~~T~yE~k~  505 (506)
T PRK01544        489 -------YLKPHDNYVITKYHQKA  505 (506)
T ss_pred             -------ccCCCCCCCCchhccCc
Confidence                   23334678889999874

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.92  E-value=1.7e-23  Score=182.89  Aligned_cols=172  Identities=22%  Similarity=0.392  Sum_probs=145.1

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      ++.|...|.. +..+|||+|||+|.++..+++..|..+++|+|+|++|++.|++++..++..|+.++++|+.+.++..+ 
T Consensus        30 ~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~-  107 (202)
T PRK00121         30 PLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF-  107 (202)
T ss_pred             CCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-
Confidence            5566666665 46899999999999999999999999999999999999999999998888899999999944334323 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecccccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  294 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~  294 (336)
                       ++..+|.+++.+++||.+..++..+..++.+++++.++|+|||.+++.+++..+..++.+.+.++|+...  .      
T Consensus       108 -~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~--~------  178 (202)
T PRK00121        108 -PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV--S------  178 (202)
T ss_pred             -CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc--c------
Confidence             5667899999999998776666666677899999999999999999999999999999999999998643  1      


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHH
Q 019743          295 KTNQGGWLGENSFGVRSDWEQHVID  319 (336)
Q Consensus       295 ~~~~~~~~~~~~~~~~t~~e~~~~~  319 (336)
                        ..++|...++..+.|+||++|..
T Consensus       179 --~~~~~~~~~~~~~~~~~~~~~~~  201 (202)
T PRK00121        179 --EAGDYVPRPEGRPMTEYERKGLR  201 (202)
T ss_pred             --cchhhcccCccCCCcHHHHHhhc
Confidence              12457788899999999999974

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.91  E-value=1.3e-23  Score=189.33  Aligned_cols=197  Identities=14%  Similarity=0.125  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccc
Q 019743           63 NDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAA  141 (336)
Q Consensus        63 ~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~  141 (336)
                      .+..++++++. ..++    |++||+|.. |+|.++.+.+.+.+|        +++|+.+++.++.....          
T Consensus        27 ~~~~~~~~~rr-~~~~----Pl~yi~g~~~f~g~~~~v~~~vf~p--------r~~Te~Lv~~~l~~~~~----------   83 (251)
T TIGR03704        27 PGELAAMVDRR-VAGL----PLEHVLGWAEFCGLRIAVDPGVFVP--------RRRTEFLVDEAAALARP----------   83 (251)
T ss_pred             HHHHHHHHHHH-HcCC----CHHHhcccCeEcCeEEEECCCCcCC--------CccHHHHHHHHHHhhcc----------
Confidence            45667777773 3444    999999988 999999999988888        59999999888753221          


Q ss_pred             cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--------HHHhhh
Q 019743          142 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--------TFRSIV  213 (336)
Q Consensus       142 ~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--------~~d~iv  213 (336)
                        .....++||+|||||.+++.+++..|..+++|+|+|+.|++.|++|++.++   ++++++|+.+        .||.++
T Consensus        84 --~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        84 --RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             --cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEE
Confidence              011358999999999999999999888999999999999999999998765   4678888753        378999


Q ss_pred             cCCCCeEEEEEee-CCCCCCCcchh------hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          214 ASYPGKLILVSIQ-CPNPDFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       214 snpp~~~d~i~~~-~~dp~~~~~~~------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      +||||........ .++......+.      ....+++++++.+.++|+|||+++++++. ++...+.+.+.++||....
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-~~~~~v~~~l~~~g~~~~~  237 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-RQAPLAVEAFARAGLIARV  237 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-chHHHHHHHHHHCCCCcee
Confidence            9999964321111 11110000000      11234789999999999999999999986 4578899999999987654


Q ss_pred             ee
Q 019743          287 LV  288 (336)
Q Consensus       287 ~~  288 (336)
                      ..
T Consensus       238 ~~  239 (251)
T TIGR03704       238 AS  239 (251)
T ss_pred             eE
Confidence            44

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.90  E-value=2e-23  Score=182.63  Aligned_cols=167  Identities=14%  Similarity=0.128  Sum_probs=130.6

Q ss_pred             eccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccH
Q 019743           81 LYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGL  159 (336)
Q Consensus        81 ~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~  159 (336)
                      .+|+|||+|.. |.+......|++.||        +|||++.++.++......        .  ..+...+||+|||||+
T Consensus       100 r~PlQYIlg~~~F~~l~l~~~pgVlIP--------RpETEE~V~~Vid~~~~~--------~--~~~~~~ildlgtGSGa  161 (328)
T KOG2904|consen  100 RMPLQYILGSQPFGDLDLVCKPGVLIP--------RPETEEWVEAVIDALNNS--------E--HSKHTHILDLGTGSGA  161 (328)
T ss_pred             cCChhheeccCccCCceEEecCCeeec--------CccHHHHHHHHHHHHhhh--------h--hcccceEEEecCCccH
Confidence            57999999988 999999999999999        599999998887653310        0  0124579999999999


Q ss_pred             HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEE----ecchhH-------HHHhhhcCCCCeEEEEEeeC
Q 019743          160 FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFI----ATNATS-------TFRSIVASYPGKLILVSIQC  227 (336)
Q Consensus       160 ~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~----~~d~~~-------~~d~ivsnpp~~~d~i~~~~  227 (336)
                      +++.++...|+++++|+|.|+.|+..|.+|++++++.+ +.++    .+|+..       .+|.++|||||..+.- +.+
T Consensus       162 Islsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD-~~~  240 (328)
T KOG2904|consen  162 ISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDD-NRQ  240 (328)
T ss_pred             HHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccc-hhh
Confidence            99999999999999999999999999999999998765 5554    334432       4789999999986543 333


Q ss_pred             CCCCCCcchhhhhc--------chHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          228 PNPDFNRPEHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       228 ~dp~~~~~~~~~~l--------~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ..|.....+++.++        ++..++.-+.|.|+|||.+.++.+.
T Consensus       241 l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  241 LKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE  287 (328)
T ss_pred             cCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence            44444333333232        3578899999999999999998873

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.89  E-value=2.2e-22  Score=184.09  Aligned_cols=201  Identities=15%  Similarity=0.154  Sum_probs=153.6

Q ss_pred             chHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccccc
Q 019743           62 ANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSA  140 (336)
Q Consensus        62 ~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g  140 (336)
                      ..+..++++++. ..+    .|++|++|.. |++..+.+.+.+.+|        +|+|+..++.++....          
T Consensus        49 ~~~~~~~~~~~~-~~~----~p~~~i~g~~~f~~~~~~~~~~~lip--------r~~te~l~~~~~~~~~----------  105 (275)
T PRK09328         49 ELERFRALVARR-AAG----EPLQYILGEAEFWGLDFKVSPGVLIP--------RPETEELVEWALEALL----------  105 (275)
T ss_pred             HHHHHHHHHHHH-HcC----CCHHHHceeceEcCcEEEECCCceeC--------CCCcHHHHHHHHHhcc----------
Confidence            346667777774 334    4999999988 999999998888888        5999999887774321          


Q ss_pred             ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcC
Q 019743          141 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVAS  215 (336)
Q Consensus       141 ~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsn  215 (336)
                         ..+..+|||+|||+|++++.++...|..+++|+|+|+.+++.|++|+......++.++++|+..     .||.+++|
T Consensus       106 ---~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n  182 (275)
T PRK09328        106 ---LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN  182 (275)
T ss_pred             ---ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence               1125689999999999999999999999999999999999999999873334579999999864     48999999


Q ss_pred             CCCeEEEEEeeCCCCCCCcchh--------hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          216 YPGKLILVSIQCPNPDFNRPEH--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~--------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      |||........ ..+......+        ....+++++++++.++|+|||.+++++++ .+.+.+.+++.+.||..+..
T Consensus       183 pPy~~~~~~~~-~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        183 PPYIPEADIHL-LQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             CCcCCcchhhh-CCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHHHHHHHhCCCceeEE
Confidence            99963321110 1111110011        11234689999999999999999999987 56788999999999987777


Q ss_pred             ecc
Q 019743          288 VQD  290 (336)
Q Consensus       288 ~~d  290 (336)
                      ..|
T Consensus       261 ~~d  263 (275)
T PRK09328        261 RKD  263 (275)
T ss_pred             ecC
Confidence            666

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.87  E-value=4.7e-21  Score=172.88  Aligned_cols=202  Identities=17%  Similarity=0.203  Sum_probs=152.8

Q ss_pred             CCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccc
Q 019743           60 KGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDW  138 (336)
Q Consensus        60 ~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~  138 (336)
                      .+..+...+.+++..+     ..|++++.+.. |++.++.+.+.+.+|        +|+|...+..++....        
T Consensus        27 ~~~~~~~~~~~~~~~~-----~~pl~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~~l~~~~l~~~~--------   85 (251)
T TIGR03534        27 PEELARFEALLARRAK-----GEPVAYILGEREFYGLDFKVSPGVLIP--------RPDTEELVEAALERLK--------   85 (251)
T ss_pred             HHHHHHHHHHHHHHHc-----CCCHHHHcccceEeceEEEECCCcccC--------CCChHHHHHHHHHhcc--------
Confidence            3345666666666432     34999999987 999988887777677        5999988887776432        


Q ss_pred             ccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhh
Q 019743          139 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIV  213 (336)
Q Consensus       139 ~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~iv  213 (336)
                            .+..+|||+|||+|.++..+++..|..+++|+|+|+.+++.|++|+..+++.++.++++|+.+     .||.++
T Consensus        86 ------~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi  159 (251)
T TIGR03534        86 ------KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIV  159 (251)
T ss_pred             ------cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEE
Confidence                  124589999999999999999999999999999999999999999998888889999999854     378888


Q ss_pred             cCCCCeEEEEEeeCCCCCCCcchh--------hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          214 ASYPGKLILVSIQCPNPDFNRPEH--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       214 snpp~~~d~i~~~~~dp~~~~~~~--------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      +||||......... .+......+        .....+..+++.+.++|+|||.+++++++ .+.+.+.+.+.++||..+
T Consensus       160 ~npPy~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-~~~~~~~~~l~~~gf~~v  237 (251)
T TIGR03534       160 SNPPYIPEADIHLL-DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-DQGEAVRALFEAAGFADV  237 (251)
T ss_pred             ECCCCCchhhhhhc-ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-cHHHHHHHHHHhCCCCce
Confidence            99998532110000 000000000        01123578999999999999999999876 457888999999999988


Q ss_pred             eeecc
Q 019743          286 VLVQD  290 (336)
Q Consensus       286 ~~~~d  290 (336)
                      .+.+|
T Consensus       238 ~~~~d  242 (251)
T TIGR03534       238 ETRKD  242 (251)
T ss_pred             EEEeC
Confidence            88777

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02672 methionine S-methyltransferase

Probab=99.86  E-value=3e-21  Score=200.64  Aligned_cols=181  Identities=17%  Similarity=0.109  Sum_probs=140.0

Q ss_pred             eecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHH
Q 019743           88 CTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR  166 (336)
Q Consensus        88 ~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~  166 (336)
                      .|.. |+|.++.|.|.+.||        +|+|+.+++. +...+.        ..+   ++.+|||+|||||++++.+++
T Consensus        79 ~G~~~F~~l~~~V~p~VLIP--------RpeTE~lve~-L~~~~~--------~~~---~~~~VLDlG~GSG~Iai~La~  138 (1082)
T PLN02672         79 EGFRNRKKLTMMEIPSIFIP--------EDWSFTFYEG-LNRHPD--------SIF---RDKTVAELGCGNGWISIAIAE  138 (1082)
T ss_pred             CCeEEecCCceeeCCCcccC--------chhHHHHHHH-HHhccc--------ccC---CCCEEEEEecchHHHHHHHHH
Confidence            4777 999999999999999        5999999987 543221        001   135799999999999999999


Q ss_pred             hCCCCeEEEEecChHHHHHHHHHHHHhCC----------------CcEEEEecchhH-------HHHhhhcCCCCeEEEE
Q 019743          167 KRKDLNFLGLEVNGKLVTHCRDSLQLSGI----------------TNGYFIATNATS-------TFRSIVASYPGKLILV  223 (336)
Q Consensus       167 ~~p~~~v~giDis~~~l~~a~~n~~~~~~----------------~nv~~~~~d~~~-------~~d~ivsnpp~~~d~i  223 (336)
                      ++|..+++|+|+|+.|++.|++|++.+++                .+++|+++|+.+       .||.|+|||||.....
T Consensus       139 ~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e  218 (1082)
T PLN02672        139 KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPN  218 (1082)
T ss_pred             HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcc
Confidence            99989999999999999999999988643                369999999865       2799999999975421


Q ss_pred             E-eeCC-----CCC-------CCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHH-HHHHHcCCc
Q 019743          224 S-IQCP-----NPD-------FNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK-QQFLEYGKG  283 (336)
Q Consensus       224 ~-~~~~-----dp~-------~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~l~~~g~~  283 (336)
                      . ...+     +|.       +....      .....++++++.++.++|+|||++++|++. ++.+.+. +++++.||.
T Consensus       219 ~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~-~q~~~v~~~l~~~~gf~  297 (1082)
T PLN02672        219 PEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG-RPGQAVCERLFERRGFR  297 (1082)
T ss_pred             hhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHHHCCCC
Confidence            1 1111     110       01111      223346899999999999999999999986 5688998 699999988


Q ss_pred             ceeeec
Q 019743          284 KLVLVQ  289 (336)
Q Consensus       284 ~~~~~~  289 (336)
                      ....++
T Consensus       298 ~~~~~~  303 (1082)
T PLN02672        298 ITKLWQ  303 (1082)
T ss_pred             eeEEee
Confidence            766543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.75  E-value=7.8e-18  Score=148.81  Aligned_cols=138  Identities=17%  Similarity=0.244  Sum_probs=115.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH--------HHHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS--------TFRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~--------~~d~ivsnpp  217 (336)
                      ..+|||||||+|.+++.+|++.++++++|||++++|.+.|++|++.++++ ++++++.|+.+        .||.|++|||
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            57899999999999999999988899999999999999999999998875 79999999975        2889999999


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      |--.... ..+++.....+|...+..+.+++.+.++|||||.+++.... +...++.+.+.+++|....
T Consensus       125 yf~~~~~-~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-erl~ei~~~l~~~~~~~k~  191 (248)
T COG4123         125 YFKQGSR-LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-ERLAEIIELLKSYNLEPKR  191 (248)
T ss_pred             CCCCccc-cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-HHHHHHHHHHHhcCCCceE
Confidence            9533222 34666655666666677899999999999999999997764 4566788888888876543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.73  E-value=1.3e-17  Score=141.92  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=84.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~~d  221 (336)
                      ..++||+|||+|.+++.+++..|+.+++++|+|+.+++.|++|++.+++++++++++|+.+.     ||.|++|||.   
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~---  108 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPF---  108 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---S---
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccch---
Confidence            56899999999999999999999999999999999999999999999988899999998652     5555555552   


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                                 ...........+++++++.++|+|||.+++...
T Consensus       109 -----------~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  109 -----------HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             -----------BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence                       111111223568999999999999999987553

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=99.68  E-value=1.7e-16  Score=133.40  Aligned_cols=188  Identities=22%  Similarity=0.373  Sum_probs=147.3

Q ss_pred             ccccccccCC-----CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-------CCcEEEEe
Q 019743          135 DIDWSAAYHD-----PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-------ITNGYFIA  202 (336)
Q Consensus       135 ~i~~~g~~~~-----~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-------~~nv~~~~  202 (336)
                      -++|+..|+.     ++..-+.|||||-|.+.+.|+..+|+..++|.||....-+..+++++..+       ..|+.+++
T Consensus        44 ~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr  123 (249)
T KOG3115|consen   44 EMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR  123 (249)
T ss_pred             hCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee
Confidence            4555554432     12467999999999999999999999999999999999999988887665       57889999


Q ss_pred             cchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCC
Q 019743          203 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  282 (336)
Q Consensus       203 ~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  282 (336)
                      .++...+..+++  -+.++.+++.||||+++.+.|+.|++...++.+..-+|++||.++..+|+....+++...+++++.
T Consensus       124 ~namk~lpn~f~--kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hpl  201 (249)
T KOG3115|consen  124 TNAMKFLPNFFE--KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHPL  201 (249)
T ss_pred             ccchhhccchhh--hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCcH
Confidence            999887666663  566778889999999999999999999999999999999999999999999999999999999985


Q ss_pred             ccee----eeccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 019743          283 GKLV----LVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV  335 (336)
Q Consensus       283 ~~~~----~~~d~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~~  335 (336)
                      ....    +..|.+          . ......|+.-.+...+|...+..+|+++...
T Consensus       202 fe~lt~ee~~~d~~----------v-~~~~~~teeg~kv~r~~g~~f~a~f~r~~~~  247 (249)
T KOG3115|consen  202 FERLTEEEEENDPC----------V-ELLSNATEEGKKVARNGGKKFVAVFRRIPNP  247 (249)
T ss_pred             hhhcchhhhcCCcc----------h-hhhhhhhhhcccccccCCceeeeeeeeccCC
Confidence            5321    122211          0 0112234555566667777788888887654

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.67  E-value=3.5e-15  Score=129.82  Aligned_cols=120  Identities=16%  Similarity=0.205  Sum_probs=93.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+++..|+.+++|+|+|+.+++.|++|+++++..+++++.+|+.+.++.+.+++    +.+++.
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~----d~v~~~  116 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP----DRVCIE  116 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC----CEEEEE
Confidence            5789999999999999999888889999999999999999999999888889999999876544433222    333332


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  282 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  282 (336)
                      ...            ....+++++.+.|+|||++++.+...+......+.+.+.+.
T Consensus       117 ~~~------------~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  160 (196)
T PRK07402        117 GGR------------PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA  160 (196)
T ss_pred             CCc------------CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence            111            23588999999999999999977655555556666665543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.67  E-value=8.8e-16  Score=131.67  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=100.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~d~  222 (336)
                      ..+|||+|||+|.++..+++..+  +++|+|+|+.|++.|++|++.++. +++++++|+.+    .||.+++|||+....
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVRGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccCCcccEEEECCCCCCCc
Confidence            46799999999999999998865  899999999999999999988775 68899999753    478888888873110


Q ss_pred             EEeeCCCCCCCcch---hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          223 VSIQCPNPDFNRPE---HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       223 i~~~~~dp~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      .... .+++.....   ...+..++++++++.++|+|||.+++..........+.+.+.+.||....+
T Consensus        97 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537        97 DDLR-RGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             chhc-ccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence            0000 011100000   011234678999999999999999986655444678888999999875543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.66  E-value=6.9e-16  Score=136.44  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=88.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||||.+++.+++..+.++++|+|+|+.|++.|++++...+..+++|+++|+.++     +.|+.++|.+.+.
T Consensus        52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~~  126 (238)
T COG2226          52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTIS  126 (238)
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEee
Confidence            67999999999999999999998999999999999999999999988877899999999875     3378889988776


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      |.--...        ..++.+++++|+|||||++.+
T Consensus       127 fglrnv~--------d~~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226         127 FGLRNVT--------DIDKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             ehhhcCC--------CHHHHHHHHHHhhcCCeEEEE
Confidence            5322211        235899999999999998887

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.65  E-value=4.2e-15  Score=128.35  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=98.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.+++.+++.+|+.+++++|+|+.+++.|++|++.+++.+++++.+|+...    +   +..+|.+++.
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---~~~~D~v~~~  104 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---PGKADAIFIG  104 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c---CcCCCEEEEC
Confidence            56899999999999999999999999999999999999999999988888899999987432    1   2345666654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ....           ....+++.+.+.|+|||++++..-.......+.+.+++.||..++.
T Consensus       105 ~~~~-----------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287        105 GSGG-----------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC  154 (187)
T ss_pred             CCcc-----------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence            2211           2357889999999999999986533455677888999999976554

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.64  E-value=1.7e-14  Score=121.40  Aligned_cols=121  Identities=15%  Similarity=0.159  Sum_probs=103.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+++|||||||.+++.+|...|..+++++|.++++++..++|+++.+.+|+.++.+++.+.+    ++.| .+|.+++
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L----~~~~-~~daiFI  108 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL----PDLP-SPDAIFI  108 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh----cCCC-CCCEEEE
Confidence            4679999999999999999988999999999999999999999999999999999999998754    3334 6788887


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      .-.            .-.+.+++.+...|+|||++++..-..+......+.+++.|+.
T Consensus       109 GGg------------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         109 GGG------------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CCC------------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            632            1346999999999999999999665556666778888999983

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.63  E-value=1.4e-15  Score=143.66  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=89.0

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC---CcEEEEecchhH-----HHHhhhcCCCCe
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATS-----TFRSIVASYPGK  219 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~---~nv~~~~~d~~~-----~~d~ivsnpp~~  219 (336)
                      .+|||+|||+|.+++.+++++|+.+++++|+|+.|++.|++|++.++.   .+++++.+|...     .||.|++||||.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh  309 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH  309 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcc
Confidence            589999999999999999999999999999999999999999988764   368999888753     478888888874


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHH
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ  276 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~  276 (336)
                      .... +  .           .....++++.++++|+|||.+++.... .+|...+.+.
T Consensus       310 ~~~~-~--~-----------~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~  353 (378)
T PRK15001        310 QQHA-L--T-----------DNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI  353 (378)
T ss_pred             cCcc-C--C-----------HHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence            2110 0  0           012358999999999999999997532 3444444443

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.63  E-value=8.7e-15  Score=125.97  Aligned_cols=122  Identities=20%  Similarity=0.181  Sum_probs=99.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|+..|.++|+|+|+|+.|++.|+++++.++.++++++++|+.+. .     ++..+|.++..
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-~-----~~~~fDlV~~~  119 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-G-----QEEKFDVVTSR  119 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-C-----CCCCccEEEEc
Confidence            57899999999999999999899999999999999999999999999988899999998763 1     12345666654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      .-            ...+.+++.+++.|+|||.+++.... .+...+.+..+.+|+....+
T Consensus       120 ~~------------~~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        120 AV------------ASLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPKALGGKVEEV  167 (187)
T ss_pred             cc------------cCHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHHhcCceEeee
Confidence            21            12358999999999999999997654 55677778888889875443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=2.3e-15  Score=135.81  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=92.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~d~  222 (336)
                      ..+|||+|||.|.+++.+|+..|+.+++.+|+|..+++.|++|+..|+.++..++.+|..+    .||.|+||||..-..
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~  238 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK  238 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence            3589999999999999999999999999999999999999999999999887677777654    589999999973111


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-cHHHHHHHHHHH
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQF  277 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~l  277 (336)
                      -..              .-...++++.+.++|++||.+++... ...|...+.+.|
T Consensus       239 ~v~--------------~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F  280 (300)
T COG2813         239 AVV--------------HSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF  280 (300)
T ss_pred             chh--------------HHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence            000              01335999999999999999999553 344555555544

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.61  E-value=5.1e-15  Score=116.62  Aligned_cols=108  Identities=18%  Similarity=0.287  Sum_probs=82.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.+++.+++.+|..+++|+|+|+.+++.|++++...+. .+++++++|+ .. +.  + .+..+|.++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~~--~-~~~~~D~v~~   76 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF-DP--D-FLEPFDLVIC   76 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG-GT--T-TSSCEEEEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc-Cc--c-cCCCCCEEEE
Confidence            5789999999999999999988899999999999999999999966554 6899999999 21 11  1 1233677666


Q ss_pred             eC-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .. ...+.  .+.   ...+++++.+.+.|+|||++++.+
T Consensus        77 ~~~~~~~~--~~~---~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHFL--LPL---DERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGGC--CHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccc--cch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence            53 11110  000   123578999999999999999864

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.59  E-value=3.4e-14  Score=126.17  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=95.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d  221 (336)
                      +.+|||+|||+|.+++.+++.. ..+++|+|+|+.+++.|++|+..++. ++.++++|+..     .||.+++||||...
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCCCC
Confidence            5689999999999999999863 45899999999999999999988776 58888888854     36777777777422


Q ss_pred             EEEeeCCCCCCC---cchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          222 LVSIQCPNPDFN---RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       222 ~i~~~~~dp~~~---~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      .... .++..+.   ............+++++.++|+|||++++..........+.+.+.+.+|...
T Consensus       115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  180 (223)
T PRK14967        115 PPDA-PPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE  180 (223)
T ss_pred             Cccc-ccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence            1000 0000000   0001112235789999999999999999855433335567778888888643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.59  E-value=2.3e-14  Score=122.92  Aligned_cols=120  Identities=22%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|...|+.+|+|+|+|+.|++.+++++++++.+|++++++|+.+.    .  +...+|.++..
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~--~~~~fD~I~s~  116 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q--HEEQFDVITSR  116 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c--ccCCccEEEeh
Confidence            56899999999999999998888999999999999999999999999888899999998763    1  23356766554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHH---cCCcce
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE---YGKGKL  285 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~---~g~~~~  285 (336)
                      .   .         ...+.+++.+.++|+|||.+++..+... ...+....+.   .|+..+
T Consensus       117 ~---~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~-~~~~~~~~e~~~~~~~~~~  165 (181)
T TIGR00138       117 A---L---------ASLNVLLELTLNLLKVGGYFLAYKGKKY-LDEIEEAKRKCQVLGVEPL  165 (181)
T ss_pred             h---h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCc-HHHHHHHHHhhhhcCceEe
Confidence            2   1         1235788899999999999999776433 3444444443   677654

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.57  E-value=9.4e-15  Score=130.13  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=75.2

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||||.++..+++. .|+.+++|+|+|++|++.|++++...+..|++++++|+.+.     +-|+.++|.+.+
T Consensus        48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~~  122 (233)
T PF01209_consen   48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVTC  122 (233)
T ss_dssp             --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEEH
Confidence            569999999999999999987 46789999999999999999999988888999999999764     226778998887


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .|.-...        ....+.+++++|+|||||++.+
T Consensus       123 ~fglrn~--------~d~~~~l~E~~RVLkPGG~l~i  151 (233)
T PF01209_consen  123 SFGLRNF--------PDRERALREMYRVLKPGGRLVI  151 (233)
T ss_dssp             ES-GGG---------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred             HhhHHhh--------CCHHHHHHHHHHHcCCCeEEEE
Confidence            6532111        1235889999999999999887

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=6.3e-14  Score=123.09  Aligned_cols=124  Identities=21%  Similarity=0.248  Sum_probs=110.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+.+|+|.|+|||.++..||.. .|..+++..|+.++.++.|++|++..++.| +.+..+|+.+.   +.   +..+|.+
T Consensus        94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~---~~---~~~vDav  167 (256)
T COG2519          94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG---ID---EEDVDAV  167 (256)
T ss_pred             CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc---cc---ccccCEE
Confidence            3689999999999999999975 688999999999999999999999999876 99999998764   22   2267999


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ++.+|+||             ..++.+.+.|+|||.+.+-+..-+|.+...+.+++.||..+++.
T Consensus       168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence            99999999             89999999999999999988888999999999999999877654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.56  E-value=6.2e-14  Score=116.93  Aligned_cols=109  Identities=15%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             CCCeEEEEeccccHHHHHHH-HhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la-~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|||+|.++..++ +.+|..+++|+|+|++|++.|++++++.+.+|++|.++|+.+ ++..+   +..+|.++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~---~~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQEL---EEKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCS---STTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-ccccc---CCCeeEEE
Confidence            36789999999999999999 557899999999999999999999999999999999999977 33211   14678776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ......+.        -....+++.+.+.|+++|.+++....
T Consensus        79 ~~~~l~~~--------~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHF--------PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGT--------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhc--------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            65322111        11247899999999999999985543

...

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.55  E-value=2.5e-13  Score=118.42  Aligned_cols=122  Identities=14%  Similarity=0.203  Sum_probs=96.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||+|.+++.+|+.. +..+++++|+++.+++.|++|++.++ ..++.++.+|+.+.++.    .+..+|.++
T Consensus        41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V~  116 (198)
T PRK00377         41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRIF  116 (198)
T ss_pred             cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEEE
Confidence            5789999999999999998864 66899999999999999999999988 46899999998764322    123467766


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      +.....           ....+++.+.+.|+|||++++.....+....+.+.+++.||.
T Consensus       117 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~  164 (198)
T PRK00377        117 IGGGSE-----------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN  164 (198)
T ss_pred             ECCCcc-----------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence            642111           235889999999999999998665556677888889899984

>PRK14968 putative methyltransferase; Provisional

Probab=99.55  E-value=5.6e-14  Score=120.97  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhH-----HHHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATS-----TFRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~-----~~d~ivsnpp~~  219 (336)
                      +.++||+|||+|.++..++++  ..+++|+|+|+.+++.+++++..++..+  +.++++|+.+     .||.+++||||.
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            568999999999999999988  6899999999999999999998888765  8888988755     256666666653


Q ss_pred             EEEEEeeCCCCCCCcch---hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          220 LILVSIQCPNPDFNRPE---HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ...-...+ .++.....   .........+++++.++|+|||.+++........+.+.+.+.+.||......
T Consensus       102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  172 (188)
T PRK14968        102 PTEEEEEW-DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA  172 (188)
T ss_pred             CCCchhhh-hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence            21000000 00000000   0012235689999999999999998865543345678889999999765443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.54  E-value=1.1e-13  Score=136.42  Aligned_cols=137  Identities=12%  Similarity=0.080  Sum_probs=99.1

Q ss_pred             cee----eeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           84 KDF----WCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        84 vd~----~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      ++|    +++.+ |+|..+.+.+.+            .+|+..++...-                 .++.+|||||||+|
T Consensus       228 ~~y~~~~i~~~~~f~g~~~~v~~~v------------~~te~l~~~~~~-----------------~~~~~vLDiGcG~G  278 (475)
T PLN02336        228 VQYKSSGILRYERVFGEGFVSTGGL------------ETTKEFVDKLDL-----------------KPGQKVLDVGCGIG  278 (475)
T ss_pred             hccccccHHHHHHHhCCCCCCCchH------------HHHHHHHHhcCC-----------------CCCCEEEEEeccCC
Confidence            677    89988 999988776443            245555443210                 12568999999999


Q ss_pred             HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhh
Q 019743          159 LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR  238 (336)
Q Consensus       159 ~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~  238 (336)
                      ++++.+++.. +++++|+|+|+.|++.|++|+...+ .++.|.++|+...   .+  |+..+|.++....-.+..     
T Consensus       279 ~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~---~~--~~~~fD~I~s~~~l~h~~-----  346 (475)
T PLN02336        279 GGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKK---TY--PDNSFDVIYSRDTILHIQ-----  346 (475)
T ss_pred             HHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccC---CC--CCCCEEEEEECCcccccC-----
Confidence            9999999876 7899999999999999998875332 4699999998652   12  445678766532211110     


Q ss_pred             hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          239 WRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       239 ~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                         ...+++++++++|+|||++++..
T Consensus       347 ---d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        347 ---DKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             ---CHHHHHHHHHHHcCCCeEEEEEE
Confidence               12489999999999999999853

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.53  E-value=1.6e-13  Score=122.27  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|+++....+.+++.++++|+...     ..|+..+|.+++
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~~  120 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-----PFDDNSFDYVTI  120 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-----CCCCCCccEEEE
Confidence            5789999999999999999885 6789999999999999999999887788899999998653     114456777766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .+.-.+.        ....++++++.++|+|||++++..
T Consensus       121 ~~~l~~~--------~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       121 GFGLRNV--------PDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             ecccccC--------CCHHHHHHHHHHHcCcCeEEEEEE
Confidence            5432221        123488999999999999998744

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.52  E-value=3.2e-13  Score=122.68  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=80.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHH---hCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~---~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|++|++.|+++...   ....+++++++|+.+.     +.|+.++|.
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD~  148 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFDA  148 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEeE
Confidence            5689999999999999999874 678999999999999999887542   2346899999998653     225567888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +++.+.-.+..        ...++++++.++|||||++++.
T Consensus       149 V~~~~~l~~~~--------d~~~~l~ei~rvLkpGG~l~i~  181 (261)
T PLN02233        149 ITMGYGLRNVV--------DRLKAMQEMYRVLKPGSRVSIL  181 (261)
T ss_pred             EEEecccccCC--------CHHHHHHHHHHHcCcCcEEEEE
Confidence            77654322211        1248999999999999999884

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.52  E-value=1.8e-13  Score=108.65  Aligned_cols=114  Identities=23%  Similarity=0.308  Sum_probs=83.1

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|++|+...+. .+++++++|+.+... .+  ++..+|.++.+
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~--~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PL--PDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TC--TTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hc--cCceeEEEEEC
Confidence            479999999999999999997 79999999999999999999999887 579999999876411 11  33445555444


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      .|..............+..+++.+.+.|+|||.+++.+.
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            322211111111223567999999999999999998653

...

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.51  E-value=2e-13  Score=123.33  Aligned_cols=118  Identities=20%  Similarity=0.307  Sum_probs=88.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+++..+ .+++|+|+|+.|++.|++|++.+++ .++.+..+|.  .||.++           .
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~--~fD~Vv-----------a  185 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL--KADVIV-----------A  185 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC--CcCEEE-----------E
Confidence            57899999999999998877643 4699999999999999999998887 3455544432  233333           3


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      +...           .....+++++.++|+|||.+++..-.....+.+.+.+.++||.......
T Consensus       186 ni~~-----------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        186 NILA-----------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             cCcH-----------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence            2110           1235788999999999999999654556677888999999998765543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.51  E-value=1.9e-13  Score=109.24  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=82.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..++||+|||+|.++..++++.|+.+++|+|+|+.+++.|+++++.++..++.++.+|+....+.    .+..+|.+++.
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~   95 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVFIG   95 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEEEC
Confidence            46899999999999999999998899999999999999999999988888899999887642111    12346766654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .+..           ...++++.+.+.|+|||++++..
T Consensus        96 ~~~~-----------~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GSGG-----------LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             Ccch-----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence            3211           23589999999999999999853

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.51  E-value=2.8e-13  Score=120.93  Aligned_cols=126  Identities=16%  Similarity=0.201  Sum_probs=105.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-HHHhhhcCCCCeEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-TFRSIVASYPGKLIL  222 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-~~d~ivsnpp~~~d~  222 (336)
                      .+.+|||-|+|||.++.+||+. .|..+|+..|+.++.++.|++|++.+++. |+.+.+.|+.+ -|+.-+   ...+|.
T Consensus        40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~---~~~~Da  116 (247)
T PF08704_consen   40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL---ESDFDA  116 (247)
T ss_dssp             TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TTSEEE
T ss_pred             CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc---cCcccE
Confidence            3789999999999999999986 68999999999999999999999999985 79999999853 342211   346899


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcC-cCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      +++..|+||             ..+..+.+.| ++||++.+-+..-+|...+.+.|.++||..+++
T Consensus       117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET  169 (247)
T ss_dssp             EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence            999999999             7788899999 899999999988899999999999999987654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.50  E-value=3.2e-13  Score=117.28  Aligned_cols=146  Identities=13%  Similarity=0.094  Sum_probs=98.4

Q ss_pred             eeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHH
Q 019743           86 FWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMA  165 (336)
Q Consensus        86 ~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la  165 (336)
                      +|++-.|+|.++.+.+..         ..+|.|...++.++.....            ..++.+|||+|||||.+++.++
T Consensus        14 rIi~g~~~g~~l~~~~~~---------~~Rp~~d~v~e~l~~~l~~------------~~~~~~vLDl~~GsG~l~l~~l   72 (199)
T PRK10909         14 RIIGGQWRGRKLPVPDSP---------GLRPTTDRVRETLFNWLAP------------VIVDARCLDCFAGSGALGLEAL   72 (199)
T ss_pred             EEEeeccCCCEeCCCCCC---------CcCcCCHHHHHHHHHHHhh------------hcCCCEEEEcCCCccHHHHHHH
Confidence            567645888877653211         1268888877666553210            0124689999999999999765


Q ss_pred             HhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHH
Q 019743          166 RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS  245 (336)
Q Consensus       166 ~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~  245 (336)
                      .+. ..+++++|+++.+++.|++|++.++.+++.++++|+.+.+..    +...+|.++++-|  + ..      -..+.
T Consensus        73 sr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~DPP--y-~~------g~~~~  138 (199)
T PRK10909         73 SRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFVDPP--F-RK------GLLEE  138 (199)
T ss_pred             HcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEECCC--C-CC------ChHHH
Confidence            554 468999999999999999999999988999999998763211    1223454443321  1 11      12345


Q ss_pred             HHHHHHh--cCcCCcEEEEEeCc
Q 019743          246 LVEAVSD--LLVHDGKVFLQSDI  266 (336)
Q Consensus       246 ~l~~~~~--~LkpgG~l~~~~~~  266 (336)
                      .++.+..  +|+|+|.+++++..
T Consensus       139 ~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        139 TINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHHHHHCCCcCCCcEEEEEecC
Confidence            5555554  48999999998754

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.49  E-value=1.4e-13  Score=129.27  Aligned_cols=115  Identities=18%  Similarity=0.241  Sum_probs=86.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~d~  222 (336)
                      ..+|||+|||+|.+++.++++.|+.+++++|+|+.|++.|++|++.+++. .+++.+|...    .||.|++|||+.-. 
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~~~~fDlIvsNPPFH~g-  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDIKGRFDMIISNPPFHDG-  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccccCCCccEEEECCCccCC-
Confidence            35799999999999999999999999999999999999999999988864 4667777643    47777777776210 


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-cHHHHHHHHHH
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQ  276 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~  276 (336)
                           .+        ......+++++++.++|+|||.+++... ...|...+.+.
T Consensus       275 -----~~--------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~  316 (342)
T PRK09489        275 -----IQ--------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDET  316 (342)
T ss_pred             -----cc--------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHH
Confidence                 00        0011346899999999999999988553 23444444433

>PRK04266 fibrillarin; Provisional

Probab=99.48  E-value=6.4e-13  Score=117.80  Aligned_cols=129  Identities=14%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++++..  .|+.++.+|+.... .... .+..+|.++.
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~-~~~~-l~~~~D~i~~  147 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPE-RYAH-VVEKVDVIYQ  147 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcc-hhhh-ccccCCEEEE
Confidence            357999999999999999999887779999999999999888887643  68999999986420 0000 1234787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE-----eCc----HHHHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~-----~~~----~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      .+++|+          ....+++++.++|||||++++.     .++    ....+...+.+++.||......
T Consensus       148 d~~~p~----------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~  209 (226)
T PRK04266        148 DVAQPN----------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV  209 (226)
T ss_pred             CCCChh----------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            666654          1235689999999999999983     222    1223345688888999876443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=7.4e-13  Score=119.40  Aligned_cols=104  Identities=13%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      +.+|||||||+|..+..+++.  .|+.+++|+|+|+.|++.|++++..++.. ++.++++|+.+.   .+  ++  .|.+
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~---~~--~~--~D~v  129 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI---AI--EN--ASMV  129 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC---CC--CC--CCEE
Confidence            578999999999999999884  58999999999999999999999887654 799999998653   11  22  3444


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +..+.-.+..      ......+++++++.|||||.+++.
T Consensus       130 v~~~~l~~l~------~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        130 VLNFTLQFLE------PSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             ehhhHHHhCC------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4332211110      011358999999999999999884

>PLN02244 tocopherol O-methyltransferase

Probab=99.47  E-value=9.3e-13  Score=124.12  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=83.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ...+|||||||+|.++..+++.+ +++++|+|+|+.|++.|+++++..+. .+++|+++|+.+.     ..++..+|.++
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~  191 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW  191 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence            35689999999999999999987 78999999999999999999988876 4699999998653     12456678776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ......+..        ...++++++.++|||||++++.+
T Consensus       192 s~~~~~h~~--------d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        192 SMESGEHMP--------DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             ECCchhccC--------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            543222211        12489999999999999999843

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.46  E-value=8.5e-13  Score=115.27  Aligned_cols=164  Identities=12%  Similarity=0.116  Sum_probs=105.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC------CeEEEEecChHHHHHHHHHHHHhCCC---cEEEEecchhHHHHhhhcCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKD------LNFLGLEVNGKLVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASY  216 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~------~~v~giDis~~~l~~a~~n~~~~~~~---nv~~~~~d~~~~~d~ivsnp  216 (336)
                      +..++||++||||-++..+.+..+.      .+|+.+|||++|++.+++++.+.++.   .+.|+.+|+.++     +.|
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFd  174 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFD  174 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCC
Confidence            4689999999999999999887655      89999999999999999999876653   389999999874     236


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee----ecccc
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL----VQDEC  292 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~----~~d~~  292 (336)
                      +.++|...+.|.--..        -...+.+++++|+|||||+|++---....-+.+..+...+-|..+-+    ..+++
T Consensus       175 d~s~D~yTiafGIRN~--------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~  246 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNV--------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDR  246 (296)
T ss_pred             CCcceeEEEecceecC--------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhH
Confidence            6777876655421100        01248899999999999999872211111123333333333333211    11111


Q ss_pred             ccccCCCCCCCCCC--CCCCCHHHHHHHHcCCCeEE
Q 019743          293 DTKTNQGGWLGENS--FGVRSDWEQHVIDRGAPMYR  326 (336)
Q Consensus       293 ~~~~~~~~~~~~~~--~~~~t~~e~~~~~~G~~i~~  326 (336)
                          ..-..+.+..  ..+..+|..+-...|++...
T Consensus       247 ----~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  247 ----KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             ----hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence                0001122221  22345788888899987654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=9.7e-13  Score=119.20  Aligned_cols=104  Identities=15%  Similarity=0.215  Sum_probs=80.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.  ..+|+|+|+|++|++.|++++...++ .+++++++|+.+..+    .++..+|.++.
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~----~~~~~fD~V~~  118 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ----HLETPVDLILF  118 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh----hcCCCCCEEEe
Confidence            568999999999999999987  57899999999999999999988876 479999999876421    13456677665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...-.+..        ....+++++.++|||||.+++..
T Consensus       119 ~~vl~~~~--------~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        119 HAVLEWVA--------DPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             hhHHHhhC--------CHHHHHHHHHHHcCCCeEEEEEE
Confidence            42211110        11478999999999999998743

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.45  E-value=3.5e-12  Score=119.08  Aligned_cols=147  Identities=14%  Similarity=0.114  Sum_probs=100.7

Q ss_pred             ccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH
Q 019743          113 DIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL  192 (336)
Q Consensus       113 digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~  192 (336)
                      +.++.++......++...       +    . ....+|||||||+|.++..+++..+..+++++|+|+.|++.|+++.. 
T Consensus        92 ~~~~~~e~~r~~~l~~~~-------l----~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-  158 (340)
T PLN02490         92 NPGHWTEDMRDDALEPAD-------L----S-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-  158 (340)
T ss_pred             ecCcchHHHHHHHHhhcc-------c----C-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-
Confidence            345666666555554322       1    0 12568999999999999999998888899999999999999998764 


Q ss_pred             hCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----
Q 019743          193 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----  267 (336)
Q Consensus       193 ~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----  267 (336)
                        ..++.++++|+.+.     +-++..+|.++....-.+..        ...++++++.+.|+|||++++.....     
T Consensus       159 --~~~i~~i~gD~e~l-----p~~~~sFDvVIs~~~L~~~~--------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~  223 (340)
T PLN02490        159 --LKECKIIEGDAEDL-----PFPTDYADRYVSAGSIEYWP--------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWL  223 (340)
T ss_pred             --ccCCeEEeccHHhC-----CCCCCceeEEEEcChhhhCC--------CHHHHHHHHHHhcCCCcEEEEEEecCcchhH
Confidence              34688999998653     11345577665532111110        12378999999999999988732110     


Q ss_pred             -----------HHHHHHHHHHHHcCCcceee
Q 019743          268 -----------EVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       268 -----------~~~~~~~~~l~~~g~~~~~~  287 (336)
                                 ...+++.+.+++.||..+++
T Consensus       224 ~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        224 SRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             HHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence                       01356677888888886654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.44  E-value=2.5e-13  Score=127.51  Aligned_cols=125  Identities=16%  Similarity=0.185  Sum_probs=94.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH------HHHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS------TFRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~------~~d~ivsnpp~~~  220 (336)
                      +.+|||+|||||.+++.++..  ..+++|+|+++.|++.|++|++.++..++.++++|+.+      .+|.+++||||..
T Consensus       183 g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR  260 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence            568999999999999987765  68899999999999999999999998888899999864      3677788888743


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ....     .     .+.....+.++++++.+.|+|||++++.+...   ..+.+.+++.|| ....
T Consensus       261 ~~~~-----~-----~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~---~~~~~~~~~~g~-i~~~  313 (329)
T TIGR01177       261 STTA-----A-----GDGLESLYERSLEEFHEVLKSEGWIVYAVPTR---IDLESLAEDAFR-VVKR  313 (329)
T ss_pred             cccc-----c-----CCchHHHHHHHHHHHHHHccCCcEEEEEEcCC---CCHHHHHhhcCc-chhe
Confidence            2100     0     00111246799999999999999998866432   234556788888 5433

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.4e-12  Score=118.41  Aligned_cols=126  Identities=16%  Similarity=0.276  Sum_probs=93.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.++||+|||||.++++.++.. ...++|+|++|-+++.|++|++.|++.. ++.-..+...    ...|  ..+|.|+
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~----~~~~--~~~DvIV  234 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE----VPEN--GPFDVIV  234 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh----hccc--CcccEEE
Confidence            36789999999999999999885 4569999999999999999999998764 2222222211    1111  2345555


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      .+..           +....++...+.+.|||||++++.--..++.+.+.+.+.+.||.......
T Consensus       235 ANIL-----------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         235 ANIL-----------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             ehhh-----------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence            5421           11235889999999999999999766678889999999999998776543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.44  E-value=4.3e-12  Score=116.95  Aligned_cols=122  Identities=15%  Similarity=0.207  Sum_probs=91.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||||.+++.+++.. ..+++|+|+|+.|++.|++|+..+++.+ +.+...+....       ++..+|.++.
T Consensus       160 g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVva  231 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIVA  231 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEEE
Confidence            5789999999999999888753 4689999999999999999999888753 66666553211       2335676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      +..-           .....++.++.+.|+|||++++..-...+...+.+.+++. |......
T Consensus       232 n~~~-----------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~  282 (288)
T TIGR00406       232 NILA-----------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIR  282 (288)
T ss_pred             ecCH-----------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEe
Confidence            5311           1235789999999999999999654556677888888776 7765544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.44  E-value=1.9e-12  Score=117.22  Aligned_cols=98  Identities=16%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.+|||||||+|.++..+++..|+.+++|+|+|+.|++.|+++       ++.++++|+.+.    .  +...+|.++.
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~--~~~~fD~v~~   95 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDW----K--PKPDTDVVVS   95 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhC----C--CCCCceEEEE
Confidence            35789999999999999999999999999999999999998652       477899998643    1  2345787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...-.|..        ....+++++++.|||||.+++..
T Consensus        96 ~~~l~~~~--------d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         96 NAALQWVP--------EHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             ehhhhhCC--------CHHHHHHHHHHhCCCCcEEEEEc
Confidence            54333321        12488999999999999999864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.44  E-value=7.8e-12  Score=114.32  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=95.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||||||+|..++.+++. .+..+++|+|+|+.|++.|+++....+..++.++++|+...     +.++..+|.++
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi  151 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII  151 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence            3679999999999988877776 46678999999999999999999888888999999997652     22445677766


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------H----------------HHHHHHHHHHHHcCC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------E----------------EVMLRMKQQFLEYGK  282 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------~----------------~~~~~~~~~l~~~g~  282 (336)
                      .+..-.+.        ...+++++++.++|||||++++..-.      .                .....+.+++.+.||
T Consensus       152 ~~~v~~~~--------~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf  223 (272)
T PRK11873        152 SNCVINLS--------PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF  223 (272)
T ss_pred             EcCcccCC--------CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence            54321110        01247899999999999999983210      0                012356677888888


Q ss_pred             cceeee
Q 019743          283 GKLVLV  288 (336)
Q Consensus       283 ~~~~~~  288 (336)
                      ..+.+.
T Consensus       224 ~~v~i~  229 (272)
T PRK11873        224 VDITIQ  229 (272)
T ss_pred             CceEEE
Confidence            876554

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.43  E-value=2.2e-13  Score=103.34  Aligned_cols=95  Identities=16%  Similarity=0.282  Sum_probs=72.9

Q ss_pred             EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCC
Q 019743          151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  230 (336)
Q Consensus       151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp  230 (336)
                      ||+|||+|..+..+++. +..+++|+|+|+++++.++++...   .++.+.++|+...     ..|+.++|.++....-.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDL-----PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTSS-----SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc---cCchheeehHHhC-----cccccccccccccccee
Confidence            79999999999999998 789999999999999999987753   3466899997653     33678899887653222


Q ss_pred             CCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.        ....++++++.|+|||||++++
T Consensus        72 ~~--------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HL--------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GS--------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ec--------cCHHHHHHHHHHHcCcCeEEeC
Confidence            21        1345899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.43  E-value=2.4e-12  Score=125.62  Aligned_cols=125  Identities=20%  Similarity=0.214  Sum_probs=92.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHh-hhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRS-IVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~-ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+|+..  .+++|+|+|+.|++.|++|++.++++|++++++|+.+.+.. .+  ++..+|.+++
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~--~~~~fD~Vi~  373 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW--ALGGFDKVLL  373 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh--hcCCCCEEEE
Confidence            4689999999999999999884  68999999999999999999999988999999999754211 11  1233565554


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      +   |...        -....++.+.+ ++|++.+|+.++...++..+..+ .+.||....+.
T Consensus       374 d---PPr~--------g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L-~~~gY~l~~i~  423 (443)
T PRK13168        374 D---PPRA--------GAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVL-VEAGYRLKRAG  423 (443)
T ss_pred             C---cCCc--------ChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH-hhCCcEEEEEE
Confidence            3   2110        01245555554 69999999999887877776655 46688765543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.5e-12  Score=108.08  Aligned_cols=164  Identities=13%  Similarity=0.128  Sum_probs=116.2

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.+..+|..+.+..-+.+.      .+.+.    ....++|||||||+.+..|++. .|+..+.++||++.|++...+.+
T Consensus        19 YEPaEDTFlLlDaLekd~~------eL~~~----~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA   88 (209)
T KOG3191|consen   19 YEPAEDTFLLLDALEKDAA------ELKGH----NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA   88 (209)
T ss_pred             cCccchhhHHHHHHHHHHH------HHhhc----CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence            4456778777765544332      11111    2467999999999999999987 58899999999999999999998


Q ss_pred             HHhCCCcEEEEecchhH-----HHHhhhcCCCCeEEEEEeeCCCCCCCc---chhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          191 QLSGITNGYFIATNATS-----TFRSIVASYPGKLILVSIQCPNPDFNR---PEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       191 ~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d~i~~~~~dp~~~~---~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.|+. ++..++.|+..     ..|.++-||||.+....- .++.+...   .....|.+..+++.++...|.|.|.+|+
T Consensus        89 ~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~-i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl  166 (209)
T KOG3191|consen   89 RCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEE-IGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL  166 (209)
T ss_pred             HhcCC-ccceeehhHHhhhccCCccEEEECCCcCcCCccc-chhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence            87764 47888998865     367788899996432100 00011000   0112355678999999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHHcCCcceee
Q 019743          263 QSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       263 ~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      -.-..+..+++.+.++..||.....
T Consensus       167 v~~~~N~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  167 VALRANKPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             eehhhcCHHHHHHHHhhcccceeEE
Confidence            6655556778888999999876543

>TIGR00740 methyltransferase, putative

Probab=99.42  E-value=1.4e-12  Score=116.92  Aligned_cols=104  Identities=14%  Similarity=0.222  Sum_probs=78.9

Q ss_pred             CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ..+|||||||+|.++..+++.  .|+++++|+|+|+.|++.|++++...+. .+++++++|+...     ..++  +|.+
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~--~d~v  126 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-----EIKN--ASMV  126 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----CCCC--CCEE
Confidence            568999999999999999987  4789999999999999999999877653 4799999998653     1122  3444


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ++.+...+...      .....+++++++.|+|||.+++.
T Consensus       127 ~~~~~l~~~~~------~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       127 ILNFTLQFLPP------EDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             eeecchhhCCH------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            44433222110      11348999999999999999984

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.42  E-value=1.1e-12  Score=114.54  Aligned_cols=109  Identities=19%  Similarity=0.301  Sum_probs=84.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe-
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI-  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~-  225 (336)
                      +.+|||+|||-|.++..+|+.  +++|+|+|+|+++++.|+..+.+.++. +.+.+..+++.   .-  ....||.|.. 
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl---~~--~~~~FDvV~cm  131 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDL---AS--AGGQFDVVTCM  131 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHH---Hh--cCCCccEEEEh
Confidence            678999999999999999999  599999999999999999999888764 66766666553   11  2244565433 


Q ss_pred             ----eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHH
Q 019743          226 ----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ  276 (336)
Q Consensus       226 ----~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  276 (336)
                          +.|+|.             .|+..+.+.+||||.+++.|-++....+....
T Consensus       132 EVlEHv~dp~-------------~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i  173 (243)
T COG2227         132 EVLEHVPDPE-------------SFLRACAKLVKPGGILFLSTINRTLKAYLLAI  173 (243)
T ss_pred             hHHHccCCHH-------------HHHHHHHHHcCCCcEEEEeccccCHHHHHHHH
Confidence                345553             79999999999999999988776655554443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.42  E-value=3.9e-12  Score=113.61  Aligned_cols=105  Identities=15%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCC-CeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYP-GKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp-~~~d~i  223 (336)
                      ..+|||+|||+|..++++|... ++.+++++|+++++++.|++|++++++. +++++.+|+.+.++.+.++++ ..+|.+
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V  148 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA  148 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence            5689999999999999999875 4789999999999999999999999985 699999999988777766543 457877


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++....           -.|..+++.+.+.|+|||.+++
T Consensus       149 fiDa~k-----------~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        149 FVDADK-----------PNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EECCCH-----------HHHHHHHHHHHHhcCCCeEEEE
Confidence            765221           1356888999999999999887

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.42  E-value=2.7e-12  Score=119.43  Aligned_cols=155  Identities=16%  Similarity=0.122  Sum_probs=99.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+|+.  +.+|+|+|+|++|++.|++++...+. .++.++++|+.+.   ..  ++..+|.++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l---~~--~~~~FD~Vi~  204 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL---AD--EGRKFDAVLS  204 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh---hh--ccCCCCEEEE
Confidence            458999999999999999864  78999999999999999988765543 4799999998653   11  3445676654


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN  305 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~  305 (336)
                      ...-.+.        .....+++++.++|||||.+++.+.+............. .+....+. +    .+|  .|   .
T Consensus       205 ~~vLeHv--------~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~-eyi~~~lp-~----gth--~~---~  265 (322)
T PLN02396        205 LEVIEHV--------ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGA-EYILRWLP-K----GTH--QW---S  265 (322)
T ss_pred             hhHHHhc--------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhH-HHHHhcCC-C----CCc--Cc---c
Confidence            3211110        012489999999999999999977554322221111100 00000000 0    001  12   1


Q ss_pred             CCCCCCHHHHHHHHcCCCeEEE
Q 019743          306 SFGVRSDWEQHVIDRGAPMYRL  327 (336)
Q Consensus       306 ~~~~~t~~e~~~~~~G~~i~~~  327 (336)
                      ....+.+++..+.+.|..+...
T Consensus       266 ~f~tp~eL~~lL~~aGf~i~~~  287 (322)
T PLN02396        266 SFVTPEELSMILQRASVDVKEM  287 (322)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEE
Confidence            1356788888888888877554

>PHA03411 putative methyltransferase; Provisional

Probab=99.41  E-value=2.6e-12  Score=115.44  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=92.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d  221 (336)
                      ..+|||+|||+|.+++.++++.+..+++|+|+|+.|++.|+++.     .++.++++|+.+     .||.|++||||...
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l  139 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGKI  139 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCcccc
Confidence            45899999999999999988877789999999999999998763     468899999875     37889999998421


Q ss_pred             EEEeeCCCCCCCcch---hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH------HHHHHHHHHHcCCc
Q 019743          222 LVSIQCPNPDFNRPE---HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------MLRMKQQFLEYGKG  283 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~l~~~g~~  283 (336)
                      .. .. ...+.....   ....+...+++.....+|+|+|.+.+..+..++      ..+..+++.++||.
T Consensus       140 ~~-~d-~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        140 NT-TD-TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             Cc-hh-hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence            10 00 000000000   001122478999999999999988885443333      34667888899986

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.40  E-value=2.9e-12  Score=111.59  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|..+..+|++  ..+|+|+|+|+.|++.|++++...++.++++...|+.+. +     ++..+|.++..
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~fD~I~~~  102 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-T-----FDGEYDFILST  102 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-C-----cCCCcCEEEEe
Confidence            468999999999999999987  579999999999999999999888888899999887542 1     12346666544


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.-.+.      .....+.+++++.++|+|||.+++
T Consensus       103 ~~~~~~------~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        103 VVLMFL------EAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             cchhhC------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence            321110      111235899999999999999655

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=2.8e-12  Score=115.60  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.++||||||.|.+++.+|+++ +.+|+|+++|+++.+.++++++..|++ +++++..|+.+.        ...+|.|+
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrIv  142 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRIV  142 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------ccccceee
Confidence            47899999999999999999999 899999999999999999999999997 899999888653        11144443


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-      ..+|-...-++.||+.+.++|+|||.+.+.+
T Consensus       143 Svg------mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         143 SVG------MFEHVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             ehh------hHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            210      0111112246799999999999999999954

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.39  E-value=2.9e-12  Score=113.09  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+|+..+ +.+|+++|+++++++.|++|+++++++|++++++|+...+.     +...+|.+++
T Consensus        78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii~  152 (215)
T TIGR00080        78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIYV  152 (215)
T ss_pred             cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEEE
Confidence            57999999999999999999853 57899999999999999999999999999999999865311     1224677666


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..+.+              .+.+.+.+.|+|||++++...
T Consensus       153 ~~~~~--------------~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       153 TAAGP--------------KIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             cCCcc--------------cccHHHHHhcCcCcEEEEEEc
Confidence            53322              334567788999999998654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.39  E-value=9.8e-12  Score=112.73  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.+|..+++|+|+|+.|++.|+++.     .++.++.+|+...    .  ++..+|.++..
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~----~--~~~~fD~v~~~  100 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW----Q--PPQALDLIFAN  100 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc----C--CCCCccEEEEc
Confidence            57899999999999999999999999999999999999998763     5688999997642    1  33467777665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +.-.|..        ....+++++.+.|+|||.+++.+
T Consensus       101 ~~l~~~~--------d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        101 ASLQWLP--------DHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             cChhhCC--------CHHHHHHHHHHhcCCCcEEEEEC
Confidence            4433321        13589999999999999999965

>PHA03412 putative methyltransferase; Provisional

Probab=99.39  E-value=3.8e-13  Score=118.17  Aligned_cols=103  Identities=16%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~  218 (336)
                      ..+|||+|||||.+++.++++.   +..+++|+|+++.|++.|++|.     .++.++++|+..     .||.|++||||
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPPY  124 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPPF  124 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCCC
Confidence            4689999999999999999874   4679999999999999999875     347788888853     48999999999


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ....    ..+.   ...+...++..++++.+.+++++|+ +++
T Consensus       125 ~~~~----~~d~---~ar~~g~~~~~~li~~A~~Ll~~G~-~IL  160 (241)
T PHA03412        125 GKIK----TSDF---KGKYTGAEFEYKVIERASQIARQGT-FII  160 (241)
T ss_pred             CCcc----cccc---CCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence            6421    1111   1223344567789999998665555 555

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.39  E-value=2.3e-12  Score=118.09  Aligned_cols=121  Identities=19%  Similarity=0.271  Sum_probs=87.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||||.+++..++.. ..+|+|+|+++.+++.|++|++.|++.+ +.+ . ...+.       +...+|.+..
T Consensus       162 g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~-------~~~~~dlvvA  231 (295)
T PF06325_consen  162 GKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDL-------VEGKFDLVVA  231 (295)
T ss_dssp             TSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCT-------CCS-EEEEEE
T ss_pred             CCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eeccc-------ccccCCEEEE
Confidence            5699999999999999999885 3579999999999999999999999875 322 2 11111       2345676666


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      +.-.           -....++..+.++|+|||++++.--...+.+.+.+.+.+ ||...+...
T Consensus       232 NI~~-----------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~  283 (295)
T PF06325_consen  232 NILA-----------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEERE  283 (295)
T ss_dssp             ES-H-----------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred             CCCH-----------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEE
Confidence            5211           123478888899999999999955445667888888876 988765543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.39  E-value=6.7e-12  Score=114.34  Aligned_cols=104  Identities=21%  Similarity=0.255  Sum_probs=75.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||.|.+++.+|+++ +++|+|+.+|++..+.|++++++.|+. ++.+...|..+.        +..+|.|+
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv  132 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV  132 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence            46899999999999999999998 899999999999999999999998886 589999987653        11445543


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.      ..|-....++.+++.+.++|+|||++++.+
T Consensus       133 Si~~------~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  133 SIEM------FEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EESE------GGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEec------hhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            3211      112222356799999999999999999854

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.37  E-value=4.2e-12  Score=130.14  Aligned_cols=132  Identities=10%  Similarity=0.110  Sum_probs=97.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHH-------HHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATST-------FRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~-------~d~ivsnpp  217 (336)
                      +.+|||+|||||.+++.+|+.. ..+|+++|+|+.+++.|++|++.++++  +++++++|+++.       ||.|+.|||
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            4689999999999999999863 447999999999999999999999885  799999998653       566666666


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      +....     ..  . .........+..++..+.+.|+|||.+++.+.... .....+.+.+.|+....+.
T Consensus       618 ~f~~~-----~~--~-~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i~  679 (702)
T PRK11783        618 TFSNS-----KR--M-EDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEIT  679 (702)
T ss_pred             CCCCC-----Cc--c-chhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEEe
Confidence            52110     00  0 00011122467899999999999999999886543 4455777788888765444

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=1.2e-13  Score=106.54  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=62.8

Q ss_pred             EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCC
Q 019743          151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  230 (336)
Q Consensus       151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp  230 (336)
                      ||||||+|.++..++.++|..+++|+|+|+.|++.|+++....+..+...+..+..+.++..   ++..+|.++....-.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD---PPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC---C----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc---cccccceehhhhhHh
Confidence            79999999999999999999999999999999999999988876555555554443321110   124677776654433


Q ss_pred             CCCcchhhhhcchHHHHHHHHhcCcCCcEE
Q 019743          231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV  260 (336)
Q Consensus       231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  260 (336)
                      |.        ...+.+++.+++.|+|||+|
T Consensus        78 ~l--------~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HL--------EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ----------S-HHHHHHHHTTT-TSS-EE
T ss_pred             hh--------hhHHHHHHHHHHHcCCCCCC
Confidence            32        12358999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.35  E-value=3.2e-12  Score=106.21  Aligned_cols=126  Identities=21%  Similarity=0.318  Sum_probs=94.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH------HHHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS------TFRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~------~~d~ivsnpp~~  219 (336)
                      .++|||+|||.|.+...|++..-....+|+|.|+++++.|+..+++.+.+| ++|.+.|+.+      .||.+.  ..+.
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl--DKGT  145 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL--DKGT  145 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe--ecCc
Confidence            459999999999999999998545569999999999999998888888888 9999999875      356555  2445


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      +|.+.+. |+-.      ..|+  ...+..+.+.|+|||.+.+.+.+ .-.+++.+.+...+|..
T Consensus       146 ~DAisLs-~d~~------~~r~--~~Y~d~v~~ll~~~gifvItSCN-~T~dELv~~f~~~~f~~  200 (227)
T KOG1271|consen  146 LDAISLS-PDGP------VGRL--VVYLDSVEKLLSPGGIFVITSCN-FTKDELVEEFENFNFEY  200 (227)
T ss_pred             eeeeecC-CCCc------ccce--eeehhhHhhccCCCcEEEEEecC-ccHHHHHHHHhcCCeEE
Confidence            5655543 3321      1111  14556677889999999996544 44778888888888764

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.35  E-value=4.8e-12  Score=108.08  Aligned_cols=143  Identities=14%  Similarity=0.127  Sum_probs=96.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~~d  221 (336)
                      ..+|.|||||+|..+..|++++|++.++|+|-|++|++.|+++     +.|++|.++|+...     .|++++|.-..  
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~~~~dllfaNAvlq--  103 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPEQPTDLLFANAVLQ--  103 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCCCccchhhhhhhhh--
Confidence            4689999999999999999999999999999999999999553     57899999998753     44455443221  


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-H--HHHHHHHHHHHHcCCcceeeeccccccccCC
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-E--EVMLRMKQQFLEYGKGKLVLVQDECDTKTNQ  298 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~--~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~  298 (336)
                          ..||.             .+++..+...|.|||.+.+.... .  .....|.+...+..|...  ..+        
T Consensus       104 ----WlpdH-------------~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~--l~~--------  156 (257)
T COG4106         104 ----WLPDH-------------PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE--LGG--------  156 (257)
T ss_pred             ----hcccc-------------HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhh--hCc--------
Confidence                11222             37888889999999999997642 1  122345555544444421  111        


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHcCCCe
Q 019743          299 GGWLGENSFGVRSDWEQHVIDRGAPM  324 (336)
Q Consensus       299 ~~~~~~~~~~~~t~~e~~~~~~G~~i  324 (336)
                      .+- ...+......|.+.+...+-++
T Consensus       157 ~~~-~r~~v~s~a~Yy~lLa~~~~rv  181 (257)
T COG4106         157 RGL-TRAPLPSPAAYYELLAPLACRV  181 (257)
T ss_pred             ccc-ccCCCCCHHHHHHHhCccccee
Confidence            000 1233445567777777666543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.35  E-value=2.2e-12  Score=99.93  Aligned_cols=98  Identities=19%  Similarity=0.332  Sum_probs=71.0

Q ss_pred             EEEEeccccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          150 VVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       150 vLDiGcGsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      |||+|||+|..+..+++.+   |..+++|+|+|++|++.|+++....+. ++++++.|+.+. +  ..  ...+|.++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l-~--~~--~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL-P--FS--DGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH-H--HH--SSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC-c--cc--CCCeeEEEEc
Confidence            7999999999999999886   568999999999999999999987665 799999999763 3  22  3356766653


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG  258 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG  258 (336)
                      ...-     ++-.....+++++++.++|+|||
T Consensus        75 ~~~~-----~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSL-----HHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGG-----GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCcc-----CCCCHHHHHHHHHHHHHHhCCCC
Confidence            2211     11112234699999999999998

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.35  E-value=1.1e-11  Score=107.72  Aligned_cols=101  Identities=9%  Similarity=-0.003  Sum_probs=74.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.+++.+|++  +.+|+|+|+|+.|++.+++++..++++ +.+...|+... +  +   +..+|.++..
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~-~--~---~~~fD~I~~~  101 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAA-A--L---NEDYDFIFST  101 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhc-c--c---cCCCCEEEEe
Confidence            468999999999999999986  579999999999999999998877764 77777776431 1  1   2235655543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.-.+.      .......+++++.+.|+|||++++
T Consensus       102 ~~~~~~------~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       102 VVFMFL------QAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             cccccC------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence            221111      011235899999999999998665

Part of a tellurite-reducing operon tehA and tehB

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.34  E-value=4e-11  Score=109.09  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=77.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|..+..+++.+ .++++|+|+|+.|++.|+++...  ..++.+.++|+...     +-|+.++|.++..
T Consensus        53 ~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~-----~~~~~~FD~V~s~  124 (263)
T PTZ00098         53 NSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK-----DFPENTFDMIYSR  124 (263)
T ss_pred             CCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC-----CCCCCCeEEEEEh
Confidence            5789999999999999998765 67999999999999999987653  35799999997642     1245678877653


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..-.+.      .......++++++++|||||++++.
T Consensus       125 ~~l~h~------~~~d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        125 DAILHL------SYADKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             hhHHhC------CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            211110      0012358999999999999999984

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=6.9e-12  Score=122.44  Aligned_cols=138  Identities=17%  Similarity=0.118  Sum_probs=95.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-------HHHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-------TFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-------~~d~ivsnpp~  218 (336)
                      +.+|||+|||+|..++.+++.. +..+++|+|+++.+++.+++|++++|++++.++++|+..       .||.++.|||.
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc  330 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC  330 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence            5689999999999999999875 678999999999999999999999999889999999854       25666666665


Q ss_pred             eEEEEEeeCCCC-CCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC-Ccc
Q 019743          219 KLILVSIQCPNP-DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG-KGK  284 (336)
Q Consensus       219 ~~d~i~~~~~dp-~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g-~~~  284 (336)
                      +-....-..|+. |......  .-...+..+++.+.+.|||||+++..|..   .+....+...+++++ |..
T Consensus       331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~  403 (444)
T PRK14902        331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL  403 (444)
T ss_pred             CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence            422221112221 1110000  00113568999999999999999975432   222334455566654 443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.34  E-value=2e-11  Score=106.41  Aligned_cols=125  Identities=17%  Similarity=0.217  Sum_probs=99.0

Q ss_pred             ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHH
Q 019743          111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n  189 (336)
                      .+-++|++...+...++...                ..+||||||++|..++.+|+..| +.+++.+|++++..+.|+++
T Consensus        26 ~~~i~~~~g~lL~~l~~~~~----------------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~   89 (205)
T PF01596_consen   26 QMSISPETGQLLQMLVRLTR----------------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAREN   89 (205)
T ss_dssp             GGSHHHHHHHHHHHHHHHHT-----------------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHhcC----------------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHH
Confidence            34456878777765554322                56899999999999999999875 68999999999999999999


Q ss_pred             HHHhCCC-cEEEEecchhHHHHhhhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          190 LQLSGIT-NGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       190 ~~~~~~~-nv~~~~~d~~~~~d~ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +++.|+. +++++.+|+.+.++.+..+- +..+|.+++.-.           ...|..+++.+.+.|+|||.+++
T Consensus        90 ~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~-----------K~~y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen   90 FRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD-----------KRNYLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             HHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST-----------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc-----------ccchhhHHHHHhhhccCCeEEEE
Confidence            9999875 69999999998777666432 356898887621           12467888899999999999998

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.33  E-value=7.7e-12  Score=115.83  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-CCC-cEEEEe-cch---h-------HHHHhh
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIA-TNA---T-------STFRSI  212 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~~~-nv~~~~-~d~---~-------~~~d~i  212 (336)
                      ...++||||||+|++...++.+.++++++|+||++.+++.|++|++.+ ++. ++.+.+ .|.   .       +.||.+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            357899999999999999999888999999999999999999999998 675 577653 222   2       248999


Q ss_pred             hcCCCCeE
Q 019743          213 VASYPGKL  220 (336)
Q Consensus       213 vsnpp~~~  220 (336)
                      ++||||..
T Consensus       194 vcNPPf~~  201 (321)
T PRK11727        194 LCNPPFHA  201 (321)
T ss_pred             EeCCCCcC
Confidence            99999853

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.33  E-value=2.4e-11  Score=107.03  Aligned_cols=100  Identities=17%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||||.++..+++.. ++.+++++|+++++++.|++|++..+..|+.++++|+...+   .  +...+|.+++
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~---~--~~~~fD~I~~  151 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY---E--ENAPYDRIYV  151 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---C--cCCCcCEEEE
Confidence            5789999999999999999874 45799999999999999999999999889999999986531   1  1234577766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-+              .+.+.+.+.|||||++++..+
T Consensus       152 ~~~~~--------------~~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        152 TAAGP--------------DIPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             CCCcc--------------cchHHHHHhhCCCcEEEEEEc
Confidence            43221              233456678999999999654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=1.3e-11  Score=119.74  Aligned_cols=135  Identities=19%  Similarity=0.235  Sum_probs=94.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--------HHHhhhcCCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--------TFRSIVASYP  217 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--------~~d~ivsnpp  217 (336)
                      ++.+|||+|||+|..++.+++..++.+++|+|+|+.+++.+++|+++++.. ++++++|+..        .||.++.|||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~P  322 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAP  322 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCEEEECCC
Confidence            357899999999999999999887789999999999999999999998875 6889998853        2667777777


Q ss_pred             CeEEEEEeeCCCC-CCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          218 GKLILVSIQCPNP-DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       218 ~~~d~i~~~~~dp-~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      ++-....-..|+. |......  .....+++++..+.+.|||||++++.|..   .+..+.+...+++++
T Consensus       323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~  392 (427)
T PRK10901        323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP  392 (427)
T ss_pred             CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence            6532222111221 1111000  01124578999999999999999986631   222234555666553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.32  E-value=1.8e-11  Score=108.50  Aligned_cols=125  Identities=16%  Similarity=0.148  Sum_probs=91.5

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC  227 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~  227 (336)
                      +|||||||+|.++..+++.+|+.+++|+|+|+.+++.|++++...++. ++.++..|+...   .+   +..+|.++...
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~---~~---~~~fD~I~~~~   75 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD---PF---PDTYDLVFGFE   75 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC---CC---CCCCCEeehHH
Confidence            699999999999999999998899999999999999999999887764 689999887442   11   23456554321


Q ss_pred             CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------------HHHHHHHHHHHHcCCcceee
Q 019743          228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------------EVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~~~~  287 (336)
                      .-.+.        -....+++++.++|+|||++++..-..               .....+.+.+.+.||.....
T Consensus        76 ~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~  142 (224)
T smart00828       76 VIHHI--------KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG  142 (224)
T ss_pred             HHHhC--------CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence            11110        013589999999999999999843110               01245677888899987644

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=1.8e-11  Score=107.25  Aligned_cols=100  Identities=10%  Similarity=0.124  Sum_probs=77.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||||.++..+++..+ ..+++++|+++++++.|++|+..++.. +++++++|+.+.+.     +...+|.++
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~Ii  147 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-----KHAPFDAII  147 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-----cCCCccEEE
Confidence            57899999999999999998753 679999999999999999999988875 59999999865311     123467766


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +...-+              .+.+++.+.|+|||++++...
T Consensus       148 ~~~~~~--------------~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        148 VTAAAS--------------TIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             EccCcc--------------hhhHHHHHhcCcCcEEEEEEc
Confidence            653322              333567789999999988553

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.31  E-value=1.7e-11  Score=111.56  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=85.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH------HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST------FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~------~d~ivsnpp~~  219 (336)
                      +.+|||+|||+|..++.+|+... ...++++|+++.+++.+++|++++++.|+.+++.|+...      ||.++.+||.+
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs  151 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS  151 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence            57899999999999999998753 468999999999999999999999988999999997642      45555555543


Q ss_pred             EEEEEeeCCCCCCCcchhhh-----hcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          220 LILVSIQCPNPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~-----~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      -..+.-  .+|..+......     ...+.++++.+.+.|||||+++..|..
T Consensus       152 g~G~~~--~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       152 GEGVIR--KDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             CCcccc--cChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            221111  122211111111     123578999999999999999887643

>PLN02476 O-methyltransferase

Probab=99.28  E-value=8.1e-11  Score=106.73  Aligned_cols=105  Identities=12%  Similarity=0.178  Sum_probs=86.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCC-CCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASY-PGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnp-p~~~d~i  223 (336)
                      ..+|||||||+|..++++|+..| +.+++++|+++++.+.|++|+++.|+. +++++.+|+.+.++....+. +..+|.+
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V  198 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA  198 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence            56899999999999999998764 678999999999999999999999986 79999999998776544322 2356777


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++.   .+        ..-|..+++.+.+.|+|||.+++
T Consensus       199 FID---a~--------K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        199 FVD---AD--------KRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EEC---CC--------HHHHHHHHHHHHHhcCCCcEEEE
Confidence            665   22        12467899999999999999887

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.28  E-value=8e-11  Score=102.83  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=96.2

Q ss_pred             cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhC
Q 019743          116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      |+|-..+...++...                ..+||||||+.|..++.+|...| +.+++.+|+++++.+.|++|+++.|
T Consensus        45 ~e~g~~L~~L~~~~~----------------~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag  108 (219)
T COG4122          45 PETGALLRLLARLSG----------------PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG  108 (219)
T ss_pred             hhHHHHHHHHHHhcC----------------CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence            888888776665432                56899999999999999999988 8999999999999999999999999


Q ss_pred             CCc-EEEEe-cchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          195 ITN-GYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       195 ~~n-v~~~~-~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.+ +.++. +|+.+.+.. .  ...++|.+++.. +          ...|+.+++.+.+.|+|||.+++
T Consensus       109 ~~~~i~~~~~gdal~~l~~-~--~~~~fDliFIDa-d----------K~~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         109 VDDRIELLLGGDALDVLSR-L--LDGSFDLVFIDA-D----------KADYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             CcceEEEEecCcHHHHHHh-c--cCCCccEEEEeC-C----------hhhCHHHHHHHHHHhCCCcEEEE
Confidence            876 78888 598876544 2  345568777752 1          13568999999999999999998

>PRK06922 hypothetical protein; Provisional

Probab=99.28  E-value=2.3e-11  Score=120.56  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=83.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|..+..+++.+|+.+++|+|+|+.|++.|+++....+ .++.++++|+.+. +..+  ++.++|.++..
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dL-p~~f--edeSFDvVVsn  494 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINL-SSSF--EKESVDTIVYS  494 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhC-cccc--CCCCEEEEEEc
Confidence            579999999999999999999999999999999999999998876554 4688899998653 2222  56678877654


Q ss_pred             CCCCCCC-----cchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFN-----RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~-----~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ++-.+..     ....-......+++++++++|||||.+++.
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3221100     000000123468999999999999999994

>TIGR00452 methyltransferase, putative

Probab=99.28  E-value=3.7e-11  Score=111.34  Aligned_cols=128  Identities=11%  Similarity=0.087  Sum_probs=85.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|||+|.++..++...+ ..|+|+|.|+.|+.+++...+..+ ..++.+...++.+.     . +...+|.++
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-----p-~~~~FD~V~  193 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-----H-ELYAFDTVF  193 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-----C-CCCCcCEEE
Confidence            357899999999999999988764 379999999999987654332222 24678888887553     1 123467665


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC---c---------HHH-----------HHHHHHHHHHcC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---I---------EEV-----------MLRMKQQFLEYG  281 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~---~---------~~~-----------~~~~~~~l~~~g  281 (336)
                      ....-.+.        -....+++++++.|+|||.+++++-   .         ..+           ...+.+.+++.|
T Consensus       194 s~gvL~H~--------~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG  265 (314)
T TIGR00452       194 SMGVLYHR--------KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVG  265 (314)
T ss_pred             Ecchhhcc--------CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCC
Confidence            43211110        1123789999999999999998531   0         011           234566778888


Q ss_pred             Ccceeee
Q 019743          282 KGKLVLV  288 (336)
Q Consensus       282 ~~~~~~~  288 (336)
                      |..+++.
T Consensus       266 F~~V~i~  272 (314)
T TIGR00452       266 FENFRIL  272 (314)
T ss_pred             CeEEEEE
Confidence            8877554

Known examples to date are restricted to the proteobacteria.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.27  E-value=1.1e-10  Score=108.61  Aligned_cols=103  Identities=13%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..++||||||+|.+++.+++++|+.+++++|. +.+++.|++|+.+.++. +++++.+|+++. +  +  |++  |.+++
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~--~--~~~--D~v~~  221 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y--PEA--DAVLF  221 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-C--C--CCC--CEEEe
Confidence            56899999999999999999999999999997 79999999999988875 699999998642 1  2  333  54433


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.      ........++++++++.|+|||++++.
T Consensus       222 ~~~lh------~~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       222 CRILY------SANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             Ehhhh------cCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            32110      000012247899999999999999883

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK04457 spermidine synthase; Provisional

Probab=99.27  E-value=9.3e-11  Score=106.48  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.++..+++..|+.+++++|+++++++.|+++....+. ++++++.+|+.+.+..    .+..+|.|++
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~~  142 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVILV  142 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEEE
Confidence            4679999999999999999999999999999999999999998765443 6799999999775432    2334576665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...+..    .....+....+++.+.+.|+|||.+++.
T Consensus       143 D~~~~~----~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        143 DGFDGE----GIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             eCCCCC----CCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            422211    0011234579999999999999999983

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.27  E-value=3.5e-11  Score=110.88  Aligned_cols=101  Identities=11%  Similarity=0.086  Sum_probs=76.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|..++.+|+.  +.+|+|+|+|+.|++.++++++.+++ ++++...|+... +     .+..+|.++..
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~-~-----~~~~fD~I~~~  191 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA-S-----IQEEYDFILST  191 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc-c-----ccCCccEEEEc
Confidence            358999999999999999986  68999999999999999999988887 788888887542 1     13445665543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.-.+.      .......+++++.++|+|||++++
T Consensus       192 ~vl~~l------~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        192 VVLMFL------NRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             chhhhC------CHHHHHHHHHHHHHhcCCCcEEEE
Confidence            211110      111235899999999999999665

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.26  E-value=5.4e-11  Score=106.04  Aligned_cols=101  Identities=16%  Similarity=0.272  Sum_probs=79.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..|..+++++|+|+.+++.++++..    .++.++.+|+...     ..++..+|.++..
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~-----~~~~~~fD~vi~~  105 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKL-----PLEDSSFDLIVSN  105 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhC-----CCCCCceeEEEEh
Confidence            468999999999999999999999999999999999999987653    4788999998653     1245567877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+..        ....++.++.+.|+|||.+++.+
T Consensus       106 ~~l~~~~--------~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       106 LALQWCD--------DLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhcc--------CHHHHHHHHHHHcCCCcEEEEEe
Confidence            4332211        12479999999999999999854

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.26  E-value=8.2e-11  Score=112.28  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=90.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.+++.+|..  ..+++|+|+|+.+++.|++|++.++++|++|+++|+.+.... .   ...+|.++++
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~---~~~~D~vi~D  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-Q---MSAPELVLVN  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-c---CCCCCEEEEC
Confidence            458999999999999999965  578999999999999999999999988999999999764221 1   1124554443


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                         |...       -..+.+++.+. .++|++.+|++++...++..+..+   .||....+
T Consensus       308 ---PPr~-------G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~  354 (374)
T TIGR02085       308 ---PPRR-------GIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV  354 (374)
T ss_pred             ---CCCC-------CCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence               3211       12245666664 479999999999888888887766   57776544

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=4.2e-11  Score=116.19  Aligned_cols=135  Identities=14%  Similarity=0.079  Sum_probs=91.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-------HHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-------FRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-------~d~ivsnpp~  218 (336)
                      +.+|||+|||+|..+..+|... +..+++|+|+|+.+++.+++|+++.|+++++++++|+...       ||.++.+||.
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC  317 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC  317 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence            5689999999999999999875 5689999999999999999999999998899999998642       4555555554


Q ss_pred             eEEEEEeeCCCCCCC-cchhhh--hcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743          219 KLILVSIQCPNPDFN-RPEHRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG  281 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~-~~~~~~--~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g  281 (336)
                      +-....-..|+.... ......  ...+.+++..+.+.|||||.++..|...   +.-+.+.+.+..++
T Consensus       318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~  386 (431)
T PRK14903        318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK  386 (431)
T ss_pred             CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence            321111111111000 000000  1246789999999999999999977432   22223445555553

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.25  E-value=3.3e-11  Score=110.19  Aligned_cols=104  Identities=14%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC---CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD---LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~---~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ..+|||+|||+|.++..+++..|.   ..++|+|+|+.|++.|+++     ..++.+..+|+.+.     +.++.++|.+
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~l-----p~~~~sfD~I  155 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRL-----PFADQSLDAI  155 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccC-----CCcCCceeEE
Confidence            468999999999999999988764   3799999999999999764     25688999987652     1245667877


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHH
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ  275 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  275 (336)
                      +..+. |              ..++++.++|||||.+++.+.......++.+
T Consensus       156 ~~~~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~  192 (272)
T PRK11088        156 IRIYA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKG  192 (272)
T ss_pred             EEecC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHH
Confidence            65432 2              3357889999999999997654433333333

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=5.7e-11  Score=115.59  Aligned_cols=135  Identities=13%  Similarity=0.187  Sum_probs=91.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|||+|..+..+|+.. +..+++|+|+++.+++.+++|++++|++|+.++++|+....+ ....++..+|.++
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~~~fD~Vl  330 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE-LKPQWRGYFDRIL  330 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-ccccccccCCEEE
Confidence            35789999999999999999875 457999999999999999999999999999999999865310 0000123455555


Q ss_pred             eeCCCC----CCCcchhh--------h--hcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          225 IQCPNP----DFNRPEHR--------W--RMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       225 ~~~~dp----~~~~~~~~--------~--~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      +.-|-.    ..+.+..+        .  ...+.+++.++.+.|||||+++..|..   .+..+.+...+++++
T Consensus       331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~  404 (434)
T PRK14901        331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP  404 (434)
T ss_pred             EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            432210    00000000        0  112579999999999999999876532   233345556666663

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.25  E-value=5.9e-11  Score=107.18  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=74.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++.  ..+++|+|+|+.|++.|+++..     ...++++|+...     ..++.++|.++.+
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~-----~~~~~~fD~V~s~  110 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL-----PLATATFDLAWSN  110 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC-----cCCCCcEEEEEEC
Confidence            468999999999999988875  5799999999999999987642     246788887552     1245568877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +.-.|..        ....++.++.++|+|||.+++.+
T Consensus       111 ~~l~~~~--------d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        111 LAVQWCG--------NLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             chhhhcC--------CHHHHHHHHHHHcCCCeEEEEEe
Confidence            4333311        23588999999999999999965

>PRK08317 hypothetical protein; Provisional

Probab=99.24  E-value=4.3e-10  Score=100.08  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=77.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|+++.. ....++.+...|+...     ..++..+|.++.
T Consensus        20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~   93 (241)
T PRK08317         20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL-----PFPDGSFDAVRS   93 (241)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC-----CCCCCCceEEEE
Confidence            5689999999999999999987 78899999999999999998833 2335789999887542     113455676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+..        ....+++++.+.|+|||.+++.
T Consensus        94 ~~~~~~~~--------~~~~~l~~~~~~L~~gG~l~~~  123 (241)
T PRK08317         94 DRVLQHLE--------DPARALAEIARVLRPGGRVVVL  123 (241)
T ss_pred             echhhccC--------CHHHHHHHHHHHhcCCcEEEEE
Confidence            42211110        1247899999999999999874

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.23  E-value=7.4e-11  Score=115.19  Aligned_cols=129  Identities=17%  Similarity=0.057  Sum_probs=89.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.+++|+++.|++++.++++|+....      ++..+|.+++
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~------~~~~fD~Vl~  324 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS------PEEQPDAILL  324 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc------cCCCCCEEEE
Confidence            5689999999999999998864 45799999999999999999999999989999999986531      2233455444


Q ss_pred             eCC-----------CC-CCCcchhh--hhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743          226 QCP-----------NP-DFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG  281 (336)
Q Consensus       226 ~~~-----------dp-~~~~~~~~--~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g  281 (336)
                      ..|           +. |......-  -...+.+++..+.+.|+|||++++.|...   +..+.+...++.++
T Consensus       325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~  397 (445)
T PRK14904        325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP  397 (445)
T ss_pred             cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            322           11 10000000  01135689999999999999999977432   22234455666653

>PRK00811 spermidine synthase; Provisional

Probab=99.23  E-value=1.9e-10  Score=105.68  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=88.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-----CCcEEEEecchhHHHHhhhcCCCCeE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-----~~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      +..+||+||||+|.++..+++..+..+++++|+++.+++.|+++....+     -.+++++.+|+...+.    +++..+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~----~~~~~y  151 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA----ETENSF  151 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh----hCCCcc
Confidence            3568999999999999999876556799999999999999999876432     2469999999987532    245567


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      |.|++..++|+..    ...+..+.|++.+.+.|+|||.+++...
T Consensus       152 DvIi~D~~dp~~~----~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        152 DVIIVDSTDPVGP----AEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             cEEEECCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            8888877777521    1235567999999999999999998643

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.23  E-value=1.7e-10  Score=107.74  Aligned_cols=128  Identities=16%  Similarity=0.194  Sum_probs=87.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||||||+|.++..++...+. .|+|+|.|+.++..++......+ ..++.++.+|+.+.     + .+..+|.++
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p-~~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----P-ALKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----C-CcCCcCEEE
Confidence            3578999999999999999998654 59999999999876654433322 24799999988653     1 134467665


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------------HHH-----------HHHHHHHHHHcC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------------EEV-----------MLRMKQQFLEYG  281 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~-----------~~~~~~~l~~~g  281 (336)
                      ....-.      |.  .....+++++++.|+|||.+++++-.            ..|           ...+.+.+++.|
T Consensus       195 s~~vl~------H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG  266 (322)
T PRK15068        195 SMGVLY------HR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAG  266 (322)
T ss_pred             ECChhh------cc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcC
Confidence            431111      10  12248899999999999999985310            011           234677788888


Q ss_pred             Ccceeee
Q 019743          282 KGKLVLV  288 (336)
Q Consensus       282 ~~~~~~~  288 (336)
                      |..+++.
T Consensus       267 F~~i~~~  273 (322)
T PRK15068        267 FKDVRIV  273 (322)
T ss_pred             CceEEEE
Confidence            8876554

>PTZ00146 fibrillarin; Provisional

Probab=99.23  E-value=1.9e-10  Score=104.60  Aligned_cols=129  Identities=12%  Similarity=0.068  Sum_probs=87.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||+|||+|.++..+|... +...|+++|+|+.|++...+.++.  ..|+.++..|+.....  ...+...+|.++
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~p~~--y~~~~~~vDvV~  207 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARYPQK--YRMLVPMVDVIF  207 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccChhh--hhcccCCCCEEE
Confidence            35789999999999999999985 567999999999876555544432  2689999999854211  111233578877


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-----c----HHHHHHHHHHHHHcCCcceeee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----I----EEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-----~----~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      +....|+          ..+.++.++.++|||||.+++...     .    ...+.+-.+.|++.+|...+..
T Consensus       208 ~Dva~pd----------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v  270 (293)
T PTZ00146        208 ADVAQPD----------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL  270 (293)
T ss_pred             EeCCCcc----------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence            7665443          223566789999999999998421     1    1111122377888899866543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.22  E-value=4.8e-10  Score=107.34  Aligned_cols=133  Identities=12%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||||.+++.++.. ...+++++|+|+.+++.|++|++.++++  +++++++|+.+.+..... ....+|.++
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fDlVi  298 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVIV  298 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCCEEE
Confidence            568999999999999887754 3458999999999999999999999974  799999999764322110 112244444


Q ss_pred             eeCCCCCCCcchh---hhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HHHHHHHHHHHHHcCCc
Q 019743          225 IQCPNPDFNRPEH---RWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       225 ~~~~dp~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~l~~~g~~  283 (336)
                      ++.|-  +.....   .....+..++..+.++|+|||.+++.+..     ....+.+.+.....+..
T Consensus       299 lDPP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~  363 (396)
T PRK15128        299 MDPPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_pred             ECCCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence            33211  111100   01123678889999999999999874432     22333444445555543

>PRK01581 speE spermidine synthase; Validated

Probab=99.21  E-value=3.4e-10  Score=105.63  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH--H---Hh--CCCcEEEEecchhHHHHhhhcCCCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL--Q---LS--GITNGYFIATNATSTFRSIVASYPG  218 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~--~---~~--~~~nv~~~~~d~~~~~d~ivsnpp~  218 (336)
                      +..+||+||||+|..+..+++..+..+++++|+++++++.|++..  .   +.  .-++++++.+|+.+.+..    .+.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~  225 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS  225 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence            356899999999998888887666789999999999999999621  1   11  235799999999875432    344


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHH----HHHHHHHHHcCCcce
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKGKL  285 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~l~~~g~~~~  285 (336)
                      .+|.|++..++|...   ...++....|++.+.+.|+|||.+++........    ..+.+.+.+.++...
T Consensus       226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence            578888888887521   1234566899999999999999998865533222    345666777766543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.5e-10  Score=97.33  Aligned_cols=119  Identities=13%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---HHhhhcCCCCeEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLIL  222 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---~d~ivsnpp~~~d~  222 (336)
                      ++..|+|+|||||.+++..+...| .+|+|+|+++++++.+++|+.+ ...++.|+.+|+.+.   +|.++-|||+-.  
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPFG~--  120 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPFGS--  120 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCCcc--
Confidence            356799999999999999988764 6899999999999999999988 456899999999763   555566666532  


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                                 ...|.++    .|+..+.+.-   -.+|=.+ .....+.+.+...+.|+.....
T Consensus       121 -----------~~rhaDr----~Fl~~Ale~s---~vVYsiH-~a~~~~f~~~~~~~~G~~v~~~  166 (198)
T COG2263         121 -----------QRRHADR----PFLLKALEIS---DVVYSIH-KAGSRDFVEKFAADLGGTVTHI  166 (198)
T ss_pred             -----------ccccCCH----HHHHHHHHhh---heEEEee-ccccHHHHHHHHHhcCCeEEEE
Confidence                       1222333    4444443332   2333323 3345667788888899876544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.20  E-value=7.3e-12  Score=110.13  Aligned_cols=104  Identities=17%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC------cEEEEecchhHHHHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT------NGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~------nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      +.+|||+|||+|.++..||+.  .++|+|||++++|++.|++.....-..      .+.+.+.|+...-      +.  +
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~--f  159 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GK--F  159 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cc--c
Confidence            467999999999999999998  689999999999999999995433221      2556666665420      11  4


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      |.+....  .    .+|-  ..-+.|+..+.+.|||||.+++.+-+..
T Consensus       160 DaVvcse--v----leHV--~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  160 DAVVCSE--V----LEHV--KDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             ceeeeHH--H----HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            5443321  0    0000  0124899999999999999999775544

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.20  E-value=2.7e-10  Score=97.85  Aligned_cols=103  Identities=11%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..++||||||.|..++.||++  +..|+++|+|+.+++.+++.+++.+++ ++....|+.+. +     ++..+|.|+..
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~-~-----~~~~yD~I~st  101 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF-D-----FPEEYDFIVST  101 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB-S------TTTEEEEEEE
T ss_pred             CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc-c-----ccCCcCEEEEE
Confidence            578999999999999999999  789999999999999999988888876 88899987652 1     23344554321


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..      .++-.+...+++++.+...++|||.+++.+
T Consensus       102 ~v------~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  102 VV------FMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             SS------GGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EE------eccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            10      011112345789999999999999988844

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.19  E-value=1.5e-10  Score=112.47  Aligned_cols=135  Identities=15%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH--------HHHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS--------TFRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~--------~~d~ivsnpp  217 (336)
                      +.+|||+|||+|..+..+++..++.+++|+|+|+.+++.+++|+++.|++ ++.+..+|...        .||.++.+||
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP  318 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP  318 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence            57899999999999999999887789999999999999999999998876 23446666532        1444554444


Q ss_pred             CeEEEEEeeCCCC-CCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743          218 GKLILVSIQCPNP-DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG  281 (336)
Q Consensus       218 ~~~d~i~~~~~dp-~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g  281 (336)
                      .+-..+.-..|+. |....+.  .-...+.+++..+.++|||||+++..|-..   +....+...+++++
T Consensus       319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~  388 (426)
T TIGR00563       319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP  388 (426)
T ss_pred             CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence            4322211122221 1111110  011235789999999999999999865332   22334555666654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR03438 probable methyltransferase

Probab=99.19  E-value=2.5e-10  Score=105.85  Aligned_cols=112  Identities=11%  Similarity=0.094  Sum_probs=76.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCC-eEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPG-KLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~-~~d~i  223 (336)
                      ...|||+|||||..+..|++..+ ..+++|+|+|++|++.|++++.... .-++.++++|+.+.++.. .+... ....+
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~~~  142 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRLGF  142 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeEEE
Confidence            46799999999999999998876 5899999999999999999986543 124778899987543221 11100 11112


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +......++.      ......+++++++.|+|||.+++-.+
T Consensus       143 ~~gs~~~~~~------~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       143 FPGSTIGNFT------PEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EecccccCCC------HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            2111111111      11235899999999999999998554

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.19  E-value=3.3e-10  Score=101.00  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=78.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ..+|||+|||+|.++..+++..| +.+++++|+++.+++.|++++..++. .++.+..+|+.+.     ..++..+|.++
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I~  126 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAVT  126 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEEE
Confidence            46899999999999999999887 78999999999999999999876544 4688999988653     11334566655


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..+.-.+.        .....+++.+.+.|+|||.+++
T Consensus       127 ~~~~l~~~--------~~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        127 IAFGLRNV--------PDIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             EecccccC--------CCHHHHHHHHHHhccCCcEEEE
Confidence            43211110        1135889999999999999877

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.18  E-value=6.1e-10  Score=99.73  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=97.3

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~  190 (336)
                      +-++|++.......++...                ..+||||||++|..++++|+.. ++.+++.+|++++..+.|++++
T Consensus        61 ~~~~~~~g~lL~~l~~~~~----------------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~  124 (247)
T PLN02589         61 MTTSADEGQFLNMLLKLIN----------------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI  124 (247)
T ss_pred             CccCHHHHHHHHHHHHHhC----------------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence            4557888777766655322                5689999999999999999875 5789999999999999999999


Q ss_pred             HHhCC-CcEEEEecchhHHHHhhhcCC--CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          191 QLSGI-TNGYFIATNATSTFRSIVASY--PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       191 ~~~~~-~nv~~~~~d~~~~~d~ivsnp--p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++.|+ .+++++.+|+.+.++....+.  +..+|.+++.   .+        ...|..+++.+.+.|+|||.+++
T Consensus       125 ~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiD---ad--------K~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        125 QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVD---AD--------KDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             HHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEec---CC--------HHHhHHHHHHHHHhcCCCeEEEE
Confidence            99996 469999999998776654321  2357877665   21        12456888888999999999887

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.18  E-value=3.5e-10  Score=99.59  Aligned_cols=98  Identities=15%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..  .+++++|+++++++.|+++++++++.++.+.++|..+.+    . +...+|.+++.
T Consensus        79 ~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I~~~  151 (212)
T PRK00312         79 GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPFDRILVT  151 (212)
T ss_pred             CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCcCEEEEc
Confidence            5789999999999999888874  479999999999999999999989889999999975421    1 12346776665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-+              .+.+.+.+.|+|||.+++...
T Consensus       152 ~~~~--------------~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        152 AAAP--------------EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence            3221              334567789999999999765

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.18  E-value=4.5e-10  Score=104.89  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.+++.+|+.  ..+++|+|+|+.|++.|++|++.++++|++|+++|+.+....    +...+|.++++
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence            468999999999999999985  579999999999999999999999998999999999764221    12345766655


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      -|  . .       -....+++.+ ..+.|++.+|+.++....++.+..+   .||....+.
T Consensus       248 PP--r-~-------G~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~  295 (315)
T PRK03522        248 PP--R-R-------GIGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ  295 (315)
T ss_pred             CC--C-C-------CccHHHHHHH-HHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence            22  1 0       1112343333 3478899999988877777776554   477655443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.17  E-value=1e-09  Score=106.82  Aligned_cols=126  Identities=19%  Similarity=0.259  Sum_probs=90.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.+++.+|+..  .+++|+|+++.|++.|++|++.+++.|++|+++|+.+.+.... .....+|.+++.
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-~~~~~~D~vi~d  369 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-WAGQIPDVLLLD  369 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-hcCCCCCEEEEC
Confidence            4689999999999999999874  5899999999999999999999999999999999976433211 012235665544


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      .|-.          -....+++.+.+ |+|++.+|+.++...+...+ +.|.+.||....+
T Consensus       370 PPr~----------G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~-~~l~~~gy~~~~~  418 (431)
T TIGR00479       370 PPRK----------GCAAEVLRTIIE-LKPERIVYVSCNPATLARDL-EFLCKEGYGITWV  418 (431)
T ss_pred             cCCC----------CCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHH-HHHHHCCeeEEEE
Confidence            2210          123466666554 89999999987765544444 4456677865443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.17  E-value=3.1e-10  Score=103.56  Aligned_cols=107  Identities=10%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             CCeEEEEeccccHH-HHHH-HHhCCCCeEEEEecChHHHHHHHHHHHH-hCCC-cEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLF-LLGM-ARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGIT-NGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~-~~~l-a~~~p~~~v~giDis~~~l~~a~~n~~~-~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|+|||||.|-+ ++.+ +...|+.+++|+|+++++++.|++++.. .++. +++|..+|+.+...     +...+|.
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----~l~~FDl  198 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----SLKEYDV  198 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----ccCCcCE
Confidence            56899999997744 3333 4567999999999999999999999964 5664 59999999876310     1134676


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +++...-.|.       +....++++.+.+.|+|||.+++.+.
T Consensus       199 VF~~ALi~~d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        199 VFLAALVGMD-------KEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             EEEecccccc-------cccHHHHHHHHHHhcCCCcEEEEecc
Confidence            6655211110       01335899999999999999999763

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.17  E-value=9.5e-11  Score=103.09  Aligned_cols=103  Identities=16%  Similarity=0.064  Sum_probs=69.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------------hCCCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------------~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      +.+|||+|||+|..++.||.+  +.+|+|+|+|+.+++.+.+....            ....+++++++|+++. +.-. 
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~-  110 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL-TAAD-  110 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC-Cccc-
Confidence            569999999999999999987  78999999999999986442210            0123688999998663 1100 


Q ss_pred             CCCC--eEEEEEe-eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          215 SYPG--KLILVSI-QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       215 npp~--~~d~i~~-~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ++++  .+|...+ .+| |          ...+++++.+.+.|+|||++++.+
T Consensus       111 ~~~fD~i~D~~~~~~l~-~----------~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       111 LGPVDAVYDRAALIALP-E----------EMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CCCcCEEEechhhccCC-H----------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence            1222  2332211 111 1          134579999999999999876643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.16  E-value=3.3e-10  Score=97.85  Aligned_cols=132  Identities=13%  Similarity=0.084  Sum_probs=83.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhc-CCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVA-SYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivs-npp~~~d~  222 (336)
                      +.+|||+|||+|.++..++++. +..+++|+|+|+.+           ...++.++++|+.+.  .+.+.. -++..+|.
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~  101 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV  101 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence            6789999999999999998875 56789999999864           235678888887542  111111 13445677


Q ss_pred             EEeeCCCCC---CCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecc
Q 019743          223 VSIQCPNPD---FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       223 i~~~~~dp~---~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d  290 (336)
                      ++...+.+.   +...+.......+.++..+.++|+|||+++++.........+.+.+.. .|....+.+|
T Consensus       102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~~~  171 (188)
T TIGR00438       102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVTKP  171 (188)
T ss_pred             EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEeCC
Confidence            665432110   001111111224688999999999999999965433334445555444 3555555555

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.16  E-value=4e-10  Score=104.82  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+|+..+. ..|+++|+++++++.|+++++.++.+|+.++++|+.....     +...+|.+++
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii~  155 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIFV  155 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEEE
Confidence            578999999999999999998753 5799999999999999999999999899999999765311     1123576665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ....+              .+...+.+.|+|||.+++..+
T Consensus       156 ~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        156 TVGVD--------------EVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             CCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence            42211              233456678999999988653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.15  E-value=1.7e-09  Score=102.81  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=91.1

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCC-----------
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY-----------  216 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnp-----------  216 (336)
                      .++||++||+|.+++.+++..  .+|+|+|+|+.|++.|++|+..++++|++|+++|+.+.+.......           
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            469999999999999999875  4899999999999999999999999999999999987654332111           


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...+|.+++   ||...       -..+++++.+.+   |++.+|++++...++..+..+. + ||....+
T Consensus       286 ~~~~D~v~l---DPPR~-------G~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v  341 (362)
T PRK05031        286 SYNFSTIFV---DPPRA-------GLDDETLKLVQA---YERILYISCNPETLCENLETLS-Q-THKVERF  341 (362)
T ss_pred             CCCCCEEEE---CCCCC-------CCcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEE
Confidence            112465544   44311       234566666654   7999999998877777777654 3 7775544

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.14  E-value=6e-10  Score=97.86  Aligned_cols=131  Identities=13%  Similarity=0.142  Sum_probs=82.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhc-CCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVA-SYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivs-npp~~~d~  222 (336)
                      +.+|||||||+|.++..+++.. +..+|+|+|+++ |          +...++.++++|+...  ++.+.. .++..+|.
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~  120 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV  120 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence            5689999999999999999885 567999999998 1          1345799999998752  222211 13445676


Q ss_pred             EEeeCCCCCCC-cc--hh-hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecc
Q 019743          223 VSIQCPNPDFN-RP--EH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       223 i~~~~~dp~~~-~~--~~-~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d  290 (336)
                      +..++ .|.+. ..  .. ........+++.+.++|+|||.+++.+-.......+...+. ..|...++.+|
T Consensus       121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~-~~f~~v~~~Kp  190 (209)
T PRK11188        121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR-SLFTKVKVRKP  190 (209)
T ss_pred             EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH-hCceEEEEECC
Confidence            66543 12111 00  00 00111357899999999999999995422121222222222 36887777776

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.14  E-value=1e-09  Score=96.74  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++..|. .+++++|+++.+++.++++..  ...++.+..+|+.+. .  +  ++..+|.++.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-~--~--~~~~~D~i~~  112 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL-P--F--EDNSFDAVTI  112 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC-C--C--CCCcEEEEEE
Confidence            578999999999999999999876 799999999999999998875  335788999998653 1  2  3345676655


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      .+...+.        .....+++.+.+.|+|||++++.
T Consensus       113 ~~~~~~~--------~~~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       113 AFGLRNV--------TDIQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             eeeeCCc--------ccHHHHHHHHHHHcCCCcEEEEE
Confidence            4321111        12348899999999999999873

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=9.4e-10  Score=94.87  Aligned_cols=98  Identities=20%  Similarity=0.278  Sum_probs=76.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||||..+.-||+..  .+|+.+|+.++..+.|++|++..|..||.+.++|...-+..   -.||  |.|++.
T Consensus        73 g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~---~aPy--D~I~Vt  145 (209)
T COG2518          73 GDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE---EAPY--DRIIVT  145 (209)
T ss_pred             CCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC---CCCc--CEEEEe
Confidence            6799999999999999999985  49999999999999999999999999999999998653211   1344  666554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      -.-+.              +=+.+.+.|++||++++..+
T Consensus       146 aaa~~--------------vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         146 AAAPE--------------VPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             eccCC--------------CCHHHHHhcccCCEEEEEEc
Confidence            32221              11334467999999999776

>PRK03612 spermidine synthase; Provisional

Probab=99.13  E-value=9.3e-10  Score=109.32  Aligned_cols=130  Identities=15%  Similarity=0.182  Sum_probs=96.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH--HHh-----CCCcEEEEecchhHHHHhhhcCCCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL--QLS-----GITNGYFIATNATSTFRSIVASYPG  218 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~--~~~-----~~~nv~~~~~d~~~~~d~ivsnpp~  218 (336)
                      +..+|||||||+|..+..+++..+..+++++|+++++++.|+++.  ...     .-++++++.+|+.+.+..    .+.
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~~~  372 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----LAE  372 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----CCC
Confidence            356899999999999999887533379999999999999999853  211     124699999999875332    244


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC----cHHHHHHHHHHHHHcCC
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVMLRMKQQFLEYGK  282 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~~l~~~g~  282 (336)
                      .+|.|.+++++|+...   ..++..+++++.+.+.|+|||.+++.+.    .......+.+.+++.||
T Consensus       373 ~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        373 KFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            6788888877775211   1335678899999999999999998543    13334567778888888

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.11  E-value=1.2e-09  Score=96.62  Aligned_cols=150  Identities=15%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||+|||+|.++..+++.  ..+++|+|+|++|++.|++++...+. .++.+.++|+...        +..+|.++.
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii~  125 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVVC  125 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEEE
Confidence            578999999999999999876  56899999999999999999887765 4799999998653        234555443


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN  305 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~  305 (336)
                      ...-.+..      ......+++.+.+.+++++.+.+.. ... .......+... +...   ..           ....
T Consensus       126 ~~~l~~~~------~~~~~~~l~~i~~~~~~~~~i~~~~-~~~-~~~~~~~~~~~-~~~~---~~-----------~~~~  182 (219)
T TIGR02021       126 MDVLIHYP------ASDMAKALGHLASLTKERVIFTFAP-KTA-WLAFLKMIGEL-FPGS---SR-----------ATSA  182 (219)
T ss_pred             hhHHHhCC------HHHHHHHHHHHHHHhCCCEEEEECC-Cch-HHHHHHHHHhh-CcCc---cc-----------ccce
Confidence            21111100      0112467888888888777666532 212 22222222221 1100   00           0001


Q ss_pred             CCCCCCHHHHHHHHcCCCeEEEEE
Q 019743          306 SFGVRSDWEQHVIDRGAPMYRLML  329 (336)
Q Consensus       306 ~~~~~t~~e~~~~~~G~~i~~~~~  329 (336)
                      -.....+++..+...|+.+.....
T Consensus       183 ~~~~~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       183 YLHPMTDLERALGELGWKIVREGL  206 (219)
T ss_pred             EEecHHHHHHHHHHcCceeeeeec
Confidence            113457899999999998877653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.11  E-value=6.2e-10  Score=94.79  Aligned_cols=119  Identities=12%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      -.++||+|||.|.++..||.++  .+++++|+|+.+++.|+++..  +.+||.|.+.|+.+.    .  |+..||.+++.
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~----~--P~~~FDLIV~S  113 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEF----W--PEGRFDLIVLS  113 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------SS-EEEEEEE
T ss_pred             cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCC----C--CCCCeeEEEEe
Confidence            3579999999999999999996  579999999999999999876  457999999998663    1  67788887764


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------HHHHHHHHHHHHc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------EVMLRMKQQFLEY  280 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~l~~~  280 (336)
                      ----+..     .....+.++..+...|+|||.+++-+-..         .-++.+.++|.+.
T Consensus       114 EVlYYL~-----~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~  171 (201)
T PF05401_consen  114 EVLYYLD-----DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH  171 (201)
T ss_dssp             S-GGGSS-----SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred             hHhHcCC-----CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence            1111100     01123578899999999999999965221         1245677777665

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.10  E-value=3.7e-10  Score=95.86  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=56.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH------HHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST------FRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~------~d~ivsnpp~  218 (336)
                      +.++||||||+|.++..++++  ..+++|+|+++.+++.+++++..  ..|++++++|+.+.      +|.+++||||
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py   87 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPY   87 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCc
Confidence            568999999999999999988  57899999999999999998753  45899999999753      4555566555

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.09  E-value=6.3e-10  Score=106.35  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+|+.. +++|+|+|+|+++++.|++++.  +. ++++...|....        +..+|.++..
T Consensus       168 g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--------~~~fD~Ivs~  235 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--------NGQFDRIVSV  235 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--------CCCCCEEEEe
Confidence            5789999999999999999876 6799999999999999999874  33 478888886542        2334554332


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+      -....++.+++++.++|||||.+++.+
T Consensus       236 ~~~eh------vg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        236 GMFEH------VGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             Cchhh------CChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            11011      011124589999999999999999843

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.09  E-value=7.5e-10  Score=96.88  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||||||||..+..||+. .+...|+++|+++..++.|++|++..+..|+.++++|...-+.   ...|  +|.|+
T Consensus        72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~---~~ap--fD~I~  146 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP---EEAP--FDRII  146 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG---GG-S--EEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc---cCCC--cCEEE
Confidence            3689999999999999999987 4566899999999999999999999999999999999865321   1123  58877


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +...-+              ++-..+.+.|++||++++...
T Consensus       147 v~~a~~--------------~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  147 VTAAVP--------------EIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             ESSBBS--------------S--HHHHHTEEEEEEEEEEES
T ss_pred             Eeeccc--------------hHHHHHHHhcCCCcEEEEEEc
Confidence            754322              122445567999999999765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.09  E-value=7.5e-10  Score=94.96  Aligned_cols=124  Identities=18%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ...|||||||||..+..|...  +..++|+|||+.|+++|.+.--    + -.++.+|+-+-    +..+|+.||.+..-
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~----e-gdlil~DMG~G----lpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVEREL----E-GDLILCDMGEG----LPFRPGTFDGVISI  119 (270)
T ss_pred             CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhh----h-cCeeeeecCCC----CCCCCCccceEEEe
Confidence            568999999999998888655  6889999999999999987321    1 24667777542    23367777754322


Q ss_pred             CCCCCCCc-----chhhhhcchHHHHHHHHhcCcCCcEEEEEe--CcHHHHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNR-----PEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~-----~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~l~~~g~~  283 (336)
                      ..-.|.-.     -+++.|+  ..|+..++.+|++|++..++.  .+..+.+.+.+.....||.
T Consensus       120 SAvQWLcnA~~s~~~P~~Rl--~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~  181 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPKKRL--LRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG  181 (270)
T ss_pred             eeeeeecccCccccChHHHH--HHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence            11122111     1123344  389999999999999999955  2345666777777777764

>PLN02366 spermidine synthase

Probab=99.09  E-value=3.3e-09  Score=98.22  Aligned_cols=113  Identities=14%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC--C--CcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG--I--TNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~--~--~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +..+||+||||.|.++..+++..+..+++.+|+++.+++.|++.....+  .  ++++++.+|+...+..   .++..+|
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~---~~~~~yD  167 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN---APEGTYD  167 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---ccCCCCC
Confidence            3578999999999999999876445789999999999999999875432  2  4699999999775432   1345578


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      .|++..++|+.    +...+..+.|++.+.+.|+|||.+.....
T Consensus       168 vIi~D~~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        168 AIIVDSSDPVG----PAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             EEEEcCCCCCC----chhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            88887777752    22346678999999999999999987443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.09  E-value=8.1e-09  Score=89.22  Aligned_cols=109  Identities=15%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.++||++||||.+++.++.+.. ..++++|+++.+++.+++|++.++.. +++++++|+...+..... ....+|.++ 
T Consensus        50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dvv~-  126 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNVIY-  126 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceEEE-
Confidence            56899999999999999999863 48999999999999999999999875 699999999765432221 111134332 


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHH--HhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~--~~~LkpgG~l~~~~~~  266 (336)
                        .||.+..      ..+..+++.+  ..+|+++|.+++|+..
T Consensus       127 --~DPPy~~------~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       127 --LDPPFFN------GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             --ECcCCCC------CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence              2343221      1223444444  3479999999998754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.08  E-value=2.8e-09  Score=100.88  Aligned_cols=123  Identities=14%  Similarity=0.154  Sum_probs=90.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC--C---------
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS--Y---------  216 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn--p---------  216 (336)
                      .++||+|||+|.+++.+++..  ..|+|+|++++|++.|++|++.++++|++|+++|+.+.+......  .         
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            369999999999999999885  489999999999999999999999999999999998754421110  0         


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...+|.+++   ||...       -..+.+++.+.+   |++.+|++++...++..+..+..  +|....+
T Consensus       277 ~~~~d~v~l---DPPR~-------G~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~~--~Y~l~~v  332 (353)
T TIGR02143       277 SYNCSTIFV---DPPRA-------GLDPDTCKLVQA---YERILYISCNPETLKANLEQLSE--THRVERF  332 (353)
T ss_pred             cCCCCEEEE---CCCCC-------CCcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHhc--CcEEEEE
Confidence            112455544   44211       233466666544   79999999998888888877653  3665444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.08  E-value=3.6e-09  Score=93.69  Aligned_cols=105  Identities=16%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..  ..++++|+|+.+++.+++++...+..++.+...|+.+..    ..++..+|.++..
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~D~i~~~  119 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA----EKGAKSFDVVTCM  119 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh----cCCCCCccEEEeh
Confidence            5689999999999999998764  569999999999999999988777657899998876541    1123456766543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-.+.        .....+++++.+.|+|||.+++.+.
T Consensus       120 ~~l~~~--------~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       120 EVLEHV--------PDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             hHHHhC--------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence            211110        1124789999999999999998653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.08  E-value=2.8e-10  Score=103.48  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=72.3

Q ss_pred             CCeEEEEeccccH----HHHHHHHhCC-----CCeEEEEecChHHHHHHHHHHHH----hCC------------------
Q 019743          147 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLEVNGKLVTHCRDSLQL----SGI------------------  195 (336)
Q Consensus       147 ~~~vLDiGcGsG~----~~~~la~~~p-----~~~v~giDis~~~l~~a~~n~~~----~~~------------------  195 (336)
                      ..+|+|+|||||.    +++.+++..+     +.+++|+|+|+.|++.|++.+-.    .++                  
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            4689999999996    5666666544     57899999999999999885310    011                  


Q ss_pred             -----CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          196 -----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       196 -----~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                           .+|+|.+.|+.+.     .-|+..+|.|+....-.++.      .....++++++++.|+|||++++..
T Consensus       180 ~~~ir~~V~F~~~dl~~~-----~~~~~~fD~I~crnvl~yf~------~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      180 KPELKERVRFAKHNLLAE-----SPPLGDFDLIFCRNVLIYFD------EPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             ChHHhCcCEEeeccCCCC-----CCccCCCCEEEechhHHhCC------HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                 2578888887652     10234567665532111110      0123589999999999999999843

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.07  E-value=2e-09  Score=81.77  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  228 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~  228 (336)
                      +++|+|||+|.++..+++ .+..+++++|+++.++..++++.......++.+++.|+.+...    .++..+|.++...+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEccc
Confidence            489999999999999988 5678999999999999999865544555679999999876421    12345676665543


Q ss_pred             CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          229 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       229 dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..+.       ......+++.+.+.|+|||.+++.
T Consensus        76 ~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHL-------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            2211       123468899999999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.07  E-value=6.7e-09  Score=96.48  Aligned_cols=85  Identities=15%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 019743          111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~  190 (336)
                      .+|+++.+...+..+++....       .+   +.++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.|++.|++++
T Consensus       119 ~l~~~~~~~~~v~~~l~~l~~-------~~---~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~  186 (315)
T PLN02585        119 QLDIRLGHAQTVEKVLLWLAE-------DG---SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRA  186 (315)
T ss_pred             eeecccChHHHHHHHHHHHHh-------cC---CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
Confidence            356677776666655543221       00   112568999999999999999986  679999999999999999998


Q ss_pred             HHhC-----CCcEEEEecchhH
Q 019743          191 QLSG-----ITNGYFIATNATS  207 (336)
Q Consensus       191 ~~~~-----~~nv~~~~~d~~~  207 (336)
                      ...+     ..++.|...|+..
T Consensus       187 ~~~~~~~~~~~~~~f~~~Dl~~  208 (315)
T PLN02585        187 KEALAALPPEVLPKFEANDLES  208 (315)
T ss_pred             HhcccccccccceEEEEcchhh
Confidence            7642     2468888888753

>PRK05785 hypothetical protein; Provisional

Probab=99.06  E-value=1.7e-09  Score=96.23  Aligned_cols=89  Identities=7%  Similarity=0.005  Sum_probs=68.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||||.++..+++.. +.+++|+|+|++|++.|+++.        .++++|+...     +.++.++|.++..
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-----p~~d~sfD~v~~~  117 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-----PFRDKSFDVVMSS  117 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-----CCCCCCEEEEEec
Confidence            5689999999999999999886 579999999999999997631        3567787653     2256778988776


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD  257 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg  257 (336)
                      +.-.+.        ...++.++++.++|||.
T Consensus       118 ~~l~~~--------~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        118 FALHAS--------DNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             Chhhcc--------CCHHHHHHHHHHHhcCc
Confidence            532221        12358999999999994

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.06  E-value=7.6e-10  Score=94.03  Aligned_cols=102  Identities=15%  Similarity=0.085  Sum_probs=76.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE-EEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~-~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ....+||+|||||..-..+ ..-|..+|+++|.++.|-+.|.+.++++...++. |++++..+.-++    ++.++|.++
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l----~d~s~DtVV  150 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL----ADGSYDTVV  150 (252)
T ss_pred             CccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc----ccCCeeeEE
Confidence            3456899999999864433 2337899999999999999999999988777776 899988775222    456667654


Q ss_pred             eeC--CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~--~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..+  ...          ....+.++++.++|+|||+++|
T Consensus       151 ~TlvLCSv----------e~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  151 CTLVLCSV----------EDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             EEEEEecc----------CCHHHHHHHHHHhcCCCcEEEE
Confidence            322  111          1124889999999999999988

>TIGR00417 speE spermidine synthase

Probab=99.06  E-value=3.8e-09  Score=96.52  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=84.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+||+||||+|.++..+++..+..+++++|+++++++.|+++....+    ..+++++.+|+...+..    .+..+|.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yDv  148 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFDV  148 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCccE
Confidence            459999999999999998877667789999999999999999875432    24688899998765332    2345677


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      |++..++|..    ....+...++++.+.+.|+|||.+++.+.
T Consensus       149 Ii~D~~~~~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       149 IIVDSTDPVG----PAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EEEeCCCCCC----cccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            7776665541    11224567999999999999999998644

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.03  E-value=5.1e-10  Score=98.84  Aligned_cols=100  Identities=16%  Similarity=0.053  Sum_probs=68.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------------hCCCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------------~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      +.+|||+|||.|.-++.||.+  +.+|+|+|+|+.+++.+.+....            ....++++.++|+++.-    +
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~----~  111 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT----A  111 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC----c
Confidence            569999999999999999987  78999999999999987432100            01235888999987531    1


Q ss_pred             CCCCeEEEEEe----eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          215 SYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       215 npp~~~d~i~~----~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +....+|.++-    ....|          ...+++++.+.++|+|||++++
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~----------~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPE----------EMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCH----------HHHHHHHHHHHHHcCCCCeEEE
Confidence            11123444431    11111          1346899999999999997554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.00  E-value=2.3e-09  Score=105.77  Aligned_cols=103  Identities=18%  Similarity=0.222  Sum_probs=75.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++..  .+++|+|+|+.|++.+++..  ....++.++++|+... +  .+.|+.++|.++..
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~-~--~~~~~~~fD~I~~~  110 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSP-D--LNISDGSVDLIFSN  110 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEeccccc-c--cCCCCCCEEEEehh
Confidence            4689999999999999999874  58999999999998875532  2246899999998532 1  12245678877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-.+...      ....++++++.++|||||.+++
T Consensus       111 ~~l~~l~~------~~~~~~l~~~~r~Lk~gG~l~~  140 (475)
T PLN02336        111 WLLMYLSD------KEVENLAERMVKWLKVGGYIFF  140 (475)
T ss_pred             hhHHhCCH------HHHHHHHHHHHHhcCCCeEEEE
Confidence            43222110      1135899999999999999988

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.99  E-value=2.6e-09  Score=93.42  Aligned_cols=97  Identities=13%  Similarity=0.085  Sum_probs=69.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..|..+++|+|+|++|++.|+++.     .++.+.++|+.+.    +  ++.++|.++..
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~----~--~~~sfD~V~~~  112 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP----F--KDNFFDLVLTK  112 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC----C--CCCCEEEEEEC
Confidence            46799999999999999998888899999999999999998763     3567788887541    2  45667877654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..-.+.      ......++++++.+++  ++.+++
T Consensus       113 ~vL~hl------~p~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       113 GVLIHI------NPDNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             ChhhhC------CHHHHHHHHHHHHhhc--CcEEEE
Confidence            221111      0112357888888887  445555

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.99  E-value=1.1e-08  Score=91.36  Aligned_cols=104  Identities=23%  Similarity=0.279  Sum_probs=76.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++.  ..+++++|+++.+++.|++++...+. ++.+...|+.+...    .++..+|.++..
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~fD~Ii~~  121 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA----EHPGQFDVVTCM  121 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh----hcCCCccEEEEh
Confidence            568999999999999999876  57899999999999999999877665 57888888765321    123456766543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-.+.        .....+++.+.+.|+|||.+++...
T Consensus       122 ~~l~~~--------~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        122 EMLEHV--------PDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hHhhcc--------CCHHHHHHHHHHHcCCCcEEEEEec
Confidence            211110        0124788999999999999998653

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.99  E-value=5.5e-09  Score=89.51  Aligned_cols=128  Identities=20%  Similarity=0.243  Sum_probs=84.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCe---------EEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASY  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~---------v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnp  216 (336)
                      +..++|--||||.+.++.|...++..         ++|+|+++++++.|++|++..+.. .+.+.+.|+.+. .    .+
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~----~~  103 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-P----LP  103 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-G----GT
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-c----cc
Confidence            56899999999999999988766666         999999999999999999998876 488999898764 1    12


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      ++.+|.+..+.|.............+|+.+++++.++|++ ..+++.+.....    .+.+...++..
T Consensus       104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~----~~~~~~~~~~~  166 (179)
T PF01170_consen  104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL----EKALGLKGWRK  166 (179)
T ss_dssp             TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH----HHHHTSTTSEE
T ss_pred             cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH----HHHhcchhhce
Confidence            3445555554332221111122346789999999999999 555554554332    33444445443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.98  E-value=1.4e-08  Score=90.27  Aligned_cols=150  Identities=12%  Similarity=0.074  Sum_probs=89.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||+|||+|.++..+++..  ..++|+|+|+.|++.|+++....+. .++.+..+|+..        ++..+|.++.
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~~  133 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVVC  133 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEEE
Confidence            5689999999999999999874  5699999999999999999887766 478999988432        2334565544


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN  305 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~  305 (336)
                      ...-.++..      .....+++.+.+.+++++.+.+ ..... .......+.. .|..   ..+           ....
T Consensus       134 ~~~l~~~~~------~~~~~~l~~l~~~~~~~~~i~~-~~~~~-~~~~~~~l~~-~~~~---~~~-----------~~~~  190 (230)
T PRK07580        134 LDVLIHYPQ------EDAARMLAHLASLTRGSLIFTF-APYTP-LLALLHWIGG-LFPG---PSR-----------TTRI  190 (230)
T ss_pred             cchhhcCCH------HHHHHHHHHHHhhcCCeEEEEE-CCccH-HHHHHHHhcc-ccCC---ccC-----------CCCc
Confidence            311111000      1124677777776654444433 22211 1111111111 1110   000           0111


Q ss_pred             CCCCCCHHHHHHHHcCCCeEEEEE
Q 019743          306 SFGVRSDWEQHVIDRGAPMYRLML  329 (336)
Q Consensus       306 ~~~~~t~~e~~~~~~G~~i~~~~~  329 (336)
                      ......+++..+.+.|+.+.....
T Consensus       191 ~~~~~~~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        191 YPHREKGIRRALAAAGFKVVRTER  214 (230)
T ss_pred             cccCHHHHHHHHHHCCCceEeeee
Confidence            224567888888888888877554

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.96  E-value=3e-09  Score=88.72  Aligned_cols=138  Identities=17%  Similarity=0.262  Sum_probs=85.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..+|||||||+|.++..+++..  .+++|+|+|+.+++.          .++.....+....     ..|+..+|.++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~fD~i~~   84 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----------RNVVFDNFDAQDP-----PFPDGSFDLIIC   84 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----------TTSEEEEEECHTH-----HCHSSSEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----------hhhhhhhhhhhhh-----hccccchhhHhh
Confidence            46799999999999999997773  499999999999987          1222222222211     114567787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN  305 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~  305 (336)
                      ...-.+..        ....+++.+.++|||||.+++.+.....  .....+..+.+....  ..      +       .
T Consensus        85 ~~~l~~~~--------d~~~~l~~l~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~--~~------~-------~  139 (161)
T PF13489_consen   85 NDVLEHLP--------DPEEFLKELSRLLKPGGYLVISDPNRDD--PSPRSFLKWRYDRPY--GG------H-------V  139 (161)
T ss_dssp             ESSGGGSS--------HHHHHHHHHHHCEEEEEEEEEEEEBTTS--HHHHHHHHCCGTCHH--TT------T-------T
T ss_pred             HHHHhhcc--------cHHHHHHHHHHhcCCCCEEEEEEcCCcc--hhhhHHHhcCCcCcc--Cc------e-------e
Confidence            53222211        1358999999999999999997754321  122233333322110  00      0       0


Q ss_pred             CCCCCCHHHHHHHHcCCCeE
Q 019743          306 SFGVRSDWEQHVIDRGAPMY  325 (336)
Q Consensus       306 ~~~~~t~~e~~~~~~G~~i~  325 (336)
                      .......+...+.+.|..+.
T Consensus       140 ~~~~~~~~~~ll~~~G~~iv  159 (161)
T PF13489_consen  140 HFFSPDELRQLLEQAGFEIV  159 (161)
T ss_dssp             EEBBHHHHHHHHHHTTEEEE
T ss_pred             ccCCHHHHHHHHHHCCCEEE
Confidence            11334678888888887664

...

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.7e-08  Score=88.04  Aligned_cols=186  Identities=16%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             ccceeeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccc---cccCCCCCCeEEEEecccc
Q 019743           82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWS---AAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        82 ~Pvd~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~---g~~~~~~~~~vLDiGcGsG  158 (336)
                      +|..-++|+. +|..+....      +..++-..| |-+++...+.+.-..-++-+.+   -.+.-..+.+|+|-|+|||
T Consensus        46 ~~h~~iIGK~-~G~~v~ssk------G~~vylL~P-TpELWTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSG  117 (314)
T KOG2915|consen   46 LPHSDIIGKP-YGSKVASSK------GKFVYLLQP-TPELWTLALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSG  117 (314)
T ss_pred             cchhheecCC-ccceeeecC------CcEEEEecC-ChHHhhhhccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcc
Confidence            6888888854 777655432      222222233 4455665555432100000000   0011123679999999999


Q ss_pred             HHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHH-HHhhhcCCCCeEEEEEeeCCCCCCCcc
Q 019743          159 LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST-FRSIVASYPGKLILVSIQCPNPDFNRP  235 (336)
Q Consensus       159 ~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~-~d~ivsnpp~~~d~i~~~~~dp~~~~~  235 (336)
                      .++.++|+. .|..+++..|+.+...+.|.+..+.+++ +|+.+.+-|+... |+.    .....|.+++..|.||    
T Consensus       118 SlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~aDaVFLDlPaPw----  189 (314)
T KOG2915|consen  118 SLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLKADAVFLDLPAPW----  189 (314)
T ss_pred             hHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----cccccceEEEcCCChh----
Confidence            999999998 5899999999999999999999999997 4799999888642 221    1345688899999999    


Q ss_pred             hhhhhcchHHHHHHHHhcCcCCc-EEEEEeCcHHHHHHHHHHHHHcCCcceeeecccc
Q 019743          236 EHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC  292 (336)
Q Consensus       236 ~~~~~l~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~  292 (336)
                               ..+..++..||.+| ++..-+..-+|.+...+.+.+.||..++...+.+
T Consensus       190 ---------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~  238 (314)
T KOG2915|consen  190 ---------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLL  238 (314)
T ss_pred             ---------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEeeh
Confidence                     44555566888776 6666667778888889999999999888776644

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=5.3e-09  Score=100.09  Aligned_cols=121  Identities=20%  Similarity=0.297  Sum_probs=90.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ...++|++||||.+++++|+.  -.+|+|||+++.+++-|++|++.+|++|.+|+++-+++.+..++.++-..-+.+.+ 
T Consensus       384 ~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~i-  460 (534)
T KOG2187|consen  384 DKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAI-  460 (534)
T ss_pred             CcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEE-
Confidence            478999999999999999987  57899999999999999999999999999999998888877777644222232222 


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHH
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL  278 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~  278 (336)
                       .||..+       -....+++.+.+.-++--.+|+.......+..+..++.
T Consensus       461 -iDPpR~-------Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~  504 (534)
T KOG2187|consen  461 -IDPPRK-------GLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCS  504 (534)
T ss_pred             -ECCCcc-------cccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhc
Confidence             244321       23457888887776688888887665544555555543

>PRK06202 hypothetical protein; Provisional

Probab=98.93  E-value=8.2e-09  Score=92.12  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..|++.    .|+.+++|+|+|++|++.|+++....   ++.+...+....     +.++.++|.
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l-----~~~~~~fD~  132 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDEL-----VAEGERFDV  132 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccc-----cccCCCccE
Confidence            568999999999999988864    45679999999999999998875433   355555544322     114556777


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++.++.-.+...      .....+++++.++++  |.+++
T Consensus       133 V~~~~~lhh~~d------~~~~~~l~~~~r~~~--~~~~i  164 (232)
T PRK06202        133 VTSNHFLHHLDD------AEVVRLLADSAALAR--RLVLH  164 (232)
T ss_pred             EEECCeeecCCh------HHHHHHHHHHHHhcC--eeEEE
Confidence            665532221110      012478999999997  44444

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.93  E-value=4.9e-08  Score=83.08  Aligned_cols=153  Identities=15%  Similarity=0.179  Sum_probs=96.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||.|.+...|.+. .++..+|+|++++.+..|.+    +|   +.++++|+.+-+.   ..|+.+||.+.+.
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~---~f~d~sFD~VIls   82 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLA---DFPDQSFDYVILS   82 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHh---hCCCCCccEEehH
Confidence            689999999999999888775 48999999999999887754    24   5689999987533   2378889987664


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS  306 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~  306 (336)
                      -.-...  .      --+++++++   |+-|...++...+-.+...-.+++- .|---+  +..      ..-+|.....
T Consensus        83 qtLQ~~--~------~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~-~GrmPv--t~~------lPy~WYdTPN  142 (193)
T PF07021_consen   83 QTLQAV--R------RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLL-RGRMPV--TKA------LPYEWYDTPN  142 (193)
T ss_pred             hHHHhH--h------HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHh-cCCCCC--CCC------CCCcccCCCC
Confidence            111100  0      013566666   4456677776655444433333332 232211  111      1123544443


Q ss_pred             CCCCC--HHHHHHHHcCCCeEEEEEE
Q 019743          307 FGVRS--DWEQHVIDRGAPMYRLMLS  330 (336)
Q Consensus       307 ~~~~t--~~e~~~~~~G~~i~~~~~~  330 (336)
                      .+..|  .||....+.|..|.+-.+-
T Consensus       143 ih~~Ti~DFe~lc~~~~i~I~~~~~~  168 (193)
T PF07021_consen  143 IHLCTIKDFEDLCRELGIRIEERVFL  168 (193)
T ss_pred             cccccHHHHHHHHHHCCCEEEEEEEE
Confidence            44544  7999999999999776553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.92  E-value=1.5e-09  Score=99.33  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH----H--HhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST----F--RSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~----~--d~ivsnpp~~~  220 (336)
                      +.+|||||||+|.++..++++.+  +++|+|+++.|++.++++...   .+++++++|+.+.    +  +.+++||||.+
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~i  117 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPYNI  117 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCccc
Confidence            56899999999999999999864  899999999999999887642   6899999998752    2  56788888853

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.92  E-value=2.5e-09  Score=98.46  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=63.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH----HHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS----TFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~----~~d~ivsnpp~~~d  221 (336)
                      +.+|||||||+|.++..+++.  ..+++|+|+++.+++.+++++..++ ..+++++++|+.+    .+|.+++|+||.+.
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPYQIS  114 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecCCcccC
Confidence            568999999999999999987  4679999999999999999988766 4689999999975    26788999999654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=4.7e-09  Score=91.36  Aligned_cols=45  Identities=22%  Similarity=0.498  Sum_probs=41.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      ...+|||||-+|.+++++|+.+-...++|+||++..++.|+++++
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            457999999999999999999877889999999999999999875

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.89  E-value=3.8e-09  Score=95.87  Aligned_cols=70  Identities=23%  Similarity=0.373  Sum_probs=60.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~  220 (336)
                      +.+|||||||+|.++..++++  ..+++|+|+++.+++.+++++..  ..|+.++++|+.+    .+|.+++|+||..
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLPEFNKVVSNLPYQI  103 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCchhceEEEEcCCccc
Confidence            568999999999999999988  46899999999999999988754  4689999999865    2577889999854

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.86  E-value=3.4e-08  Score=84.78  Aligned_cols=111  Identities=18%  Similarity=0.279  Sum_probs=79.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.++||+-||||.+++..+.+. -..++.||.++.+++..++|++..+..+ ++++..|+...+..... +...+|.+++
T Consensus        43 g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~~~~fDiIfl  120 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-KGEKFDIIFL  120 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-CTS-EEEEEE
T ss_pred             CCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-cCCCceEEEE
Confidence            6799999999999999988885 4689999999999999999999998775 99999998775543321 2455676655


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHH--hcCcCCcEEEEEeCcH
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE  267 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~l~~~~~~~  267 (336)
                      .   |.....     ..+.++++.+.  .+|+++|.+++|++..
T Consensus       121 D---PPY~~~-----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  121 D---PPYAKG-----LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             -----STTSC-----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             C---CCcccc-----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            4   422211     11356777776  8999999999998653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.85  E-value=2.8e-08  Score=94.80  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=79.1

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  227 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~  227 (336)
                      .+|||++||+|.+++.+|.+.+...|+++|+++.+++.+++|++.++++++.+.++|+...+..     ...+|.+.++ 
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~lD-  132 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDID-  132 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEEC-
Confidence            5799999999999999999876668999999999999999999999998899999999765321     1235665553 


Q ss_pred             CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                        |. .        .-..++..+.+.+++||.+++.
T Consensus       133 --P~-G--------s~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        133 --PF-G--------SPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --CC-C--------CcHHHHHHHHHHhcCCCEEEEE
Confidence              32 1        1136778877889999999994

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.85  E-value=1.5e-08  Score=87.97  Aligned_cols=98  Identities=22%  Similarity=0.327  Sum_probs=73.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..|+|+.||-|.+++.+|+..+...|+|+|++|.+++..++|++.|++++ +..+++|+.+..      +...+|.+.+
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvim  175 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVIM  175 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEEE
T ss_pred             ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEEE
Confidence            679999999999999999997778899999999999999999999999875 889999987652      1456787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.|..            ...|+..+..++++||.+.+
T Consensus       176 ~lp~~------------~~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  176 NLPES------------SLEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             --TSS------------GGGGHHHHHHHEEEEEEEEE
T ss_pred             CChHH------------HHHHHHHHHHHhcCCcEEEC
Confidence            64432            12688889999999998764

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=5.6e-08  Score=93.86  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=92.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+++|+=||.|.|++.||++  ..+|+|+|+++++++.|++|++.+++.|++|..+++.+.....-  ..+.+|.+++.
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~VvvD  369 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVVD  369 (432)
T ss_pred             CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEEC
Confidence            568999999999999999976  67899999999999999999999999999999999987533321  13456766654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                         |..       +-..+.+++.+. .++|...+|+.++...++..+. .|.+.||..
T Consensus       370 ---PPR-------~G~~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~-~L~~~gy~i  415 (432)
T COG2265         370 ---PPR-------AGADREVLKQLA-KLKPKRIVYVSCNPATLARDLA-ILASTGYEI  415 (432)
T ss_pred             ---CCC-------CCCCHHHHHHHH-hcCCCcEEEEeCCHHHHHHHHH-HHHhCCeEE
Confidence               321       122346666665 4689999999887777666654 456667753

>PLN02823 spermine synthase

Probab=98.81  E-value=1.1e-07  Score=89.00  Aligned_cols=112  Identities=17%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+||.||+|.|..+..+++..+..+++.+|+++++++.|++.....+    -.+++++.+|+...+.    +.+..+|.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~----~~~~~yDv  179 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE----KRDEKFDV  179 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh----hCCCCccE
Confidence            468999999999999988887667899999999999999999875432    2579999999987643    23556788


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHH-HHHhcCcCCcEEEEEe
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQS  264 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~-~~~~~LkpgG~l~~~~  264 (336)
                      |++..+||....  +...++.+.|++ .+.+.|+|||.+++..
T Consensus       180 Ii~D~~dp~~~~--~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        180 IIGDLADPVEGG--PCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             EEecCCCccccC--cchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            888777764211  112366778998 8999999999998864

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=1e-08  Score=89.39  Aligned_cols=107  Identities=11%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             eEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          149 LVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +|||+|||.|.....+.+..|+  ..+++.|.|+.|++..+++..... +++.-...|+..- +..-+-++.++|.+.+-
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~-~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSP-SLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccch-hccCCCCcCccceEEEE
Confidence            7999999999999999998777  999999999999999988865432 4455555555431 11112134566655433


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      |--....   +   .-....++++.++|||||.+++.
T Consensus       152 FvLSAi~---p---ek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  152 FVLSAIH---P---EKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             EEEeccC---h---HHHHHHHHHHHHHhCCCcEEEEe
Confidence            2111000   0   12347899999999999999993

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.77  E-value=8.1e-08  Score=90.94  Aligned_cols=122  Identities=22%  Similarity=0.302  Sum_probs=78.4

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhh-----------hcCCC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-----------VASYP  217 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~i-----------vsnpp  217 (336)
                      .+||+-||+|.+++.||+..  .+|+|+|+++.|++.|++|++.++++|++|+++++.+..+.+           +....
T Consensus       199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~  276 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS  276 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred             cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence            79999999999999999884  689999999999999999999999999999998876531110           00112


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      +.+|.+.+   ||...       -..+.+++.+.+   +.=.+|+.++...++..+..+ .+ ||....+
T Consensus       277 ~~~d~vil---DPPR~-------G~~~~~~~~~~~---~~~ivYvSCnP~tlaRDl~~L-~~-~y~~~~v  331 (352)
T PF05958_consen  277 FKFDAVIL---DPPRA-------GLDEKVIELIKK---LKRIVYVSCNPATLARDLKIL-KE-GYKLEKV  331 (352)
T ss_dssp             TTESEEEE------TT--------SCHHHHHHHHH---SSEEEEEES-HHHHHHHHHHH-HC-CEEEEEE
T ss_pred             cCCCEEEE---cCCCC-------CchHHHHHHHhc---CCeEEEEECCHHHHHHHHHHH-hh-cCEEEEE
Confidence            34565544   34211       122455555543   356888888888887777665 33 7776544

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.74  E-value=8.4e-09  Score=89.91  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch-h---HHHHhhhcCCCCeEEEEE
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-T---STFRSIVASYPGKLILVS  224 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~-~---~~~d~ivsnpp~~~d~i~  224 (336)
                      .++|+|||+|.-++.+|..+  .+|+|+|+|++||+.|++.-      +++..+... .   +.++++-  ++.++|.|.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~------~~~y~~t~~~ms~~~~v~L~g--~e~SVDlI~  105 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHP------PVTYCHTPSTMSSDEMVDLLG--GEESVDLIT  105 (261)
T ss_pred             eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCC------CcccccCCccccccccccccC--CCcceeeeh
Confidence            78999999998888888775  46999999999999886542      222222111 0   1123322  477888776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc-EEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG-~l~~  262 (336)
                      ..-.-.|         ...++|.++++++|++.| .+.+
T Consensus       106 ~Aqa~HW---------Fdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  106 AAQAVHW---------FDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             hhhhHHh---------hchHHHHHHHHHHcCCCCCEEEE
Confidence            5433333         235799999999999877 5555

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.73  E-value=1.3e-07  Score=89.71  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=83.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||++-|=||.+++..|... ..++++||+|..+++.|++|++.||++  ...|+++|+++.+...-. -...+|.|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEEE
Confidence            5689999999999999999873 238999999999999999999999974  488999999875332220 011344444


Q ss_pred             eeCCCCCCCc-c--hhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          225 IQCPNPDFNR-P--EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       225 ~~~~dp~~~~-~--~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +..|  .+.. +  .....-.|.+++..+.+.|+|||.+++.+..
T Consensus       296 lDPP--sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         296 LDPP--SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             ECCc--ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            3311  1111 0  0111234789999999999999999997643

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.73  E-value=2.4e-07  Score=90.47  Aligned_cols=132  Identities=16%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||+|||.|.=+..+|... ....+++.|+++..++..++|+++.|+.|+.+...|.... ...+   +..+|.|.
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL  188 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL  188 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence            36799999999999999999875 3578999999999999999999999999999999987643 1111   33467666


Q ss_pred             eeCCCC----CCCcchhh----------hhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          225 IQCPNP----DFNRPEHR----------WRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       225 ~~~~dp----~~~~~~~~----------~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      +..|-.    +.+.....          -...+++++..+.+.|||||+++-.|-.   .+.-+-+...+++++
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP  262 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence            553322    11111000          1123689999999999999999886643   222223444555553

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.73  E-value=7.7e-08  Score=98.98  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=81.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhC------------------------------------------CCCeEEEEecChHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLEVNGKLVT  184 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~------------------------------------------p~~~v~giDis~~~l~  184 (336)
                      +..++|-+||||.+.+..|...                                          ...+++|+|+++.|++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            4689999999999999987631                                          1236999999999999


Q ss_pred             HHHHHHHHhCCCc-EEEEecchhHH--------HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCc
Q 019743          185 HCRDSLQLSGITN-GYFIATNATST--------FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV  255 (336)
Q Consensus       185 ~a~~n~~~~~~~n-v~~~~~d~~~~--------~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lk  255 (336)
                      .|++|+..+|+.+ +.+.++|+.+.        +|.|++||||...     ..+.      .....+|+.+-+.+. ...
T Consensus       271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r-----~~~~------~~l~~lY~~lg~~lk-~~~  338 (702)
T PRK11783        271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER-----LGEE------PALIALYSQLGRRLK-QQF  338 (702)
T ss_pred             HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc-----cCch------HHHHHHHHHHHHHHH-HhC
Confidence            9999999999864 89999998652        6788888888421     1110      111234555554443 334


Q ss_pred             CCcEEEEEeCcHHHH
Q 019743          256 HDGKVFLQSDIEEVM  270 (336)
Q Consensus       256 pgG~l~~~~~~~~~~  270 (336)
                      +|+.+++-++...+.
T Consensus       339 ~g~~~~llt~~~~l~  353 (702)
T PRK11783        339 GGWNAALFSSSPELL  353 (702)
T ss_pred             CCCeEEEEeCCHHHH
Confidence            999999988765543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.72  E-value=1.2e-07  Score=86.00  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=81.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.++..++.+.+ ..|+|+|-++..+.+.+.-..-.+.++ +.++-.-+.+.     ++ ...||.++
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-----p~-~~~FDtVF  187 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-----PN-LGAFDTVF  187 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-----cc-cCCcCEEE
Confidence            367999999999999999998864 469999998887766443323333333 33332222221     22 34466654


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----------------------HHHHHHHHHHHcC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----------------------VMLRMKQQFLEYG  281 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~~~~~~~~l~~~g  281 (336)
                      ..-  ...+.+++      -..+.++.+.|+|||.++++|-.-+                       ....+...++..|
T Consensus       188 ~MG--VLYHrr~P------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g  259 (315)
T PF08003_consen  188 SMG--VLYHRRSP------LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAG  259 (315)
T ss_pred             Eee--ehhccCCH------HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence            321  11011111      2788999999999999999762111                       1345777888889


Q ss_pred             Ccceeeecc
Q 019743          282 KGKLVLVQD  290 (336)
Q Consensus       282 ~~~~~~~~d  290 (336)
                      |..+++..-
T Consensus       260 F~~v~~v~~  268 (315)
T PF08003_consen  260 FKDVRCVDV  268 (315)
T ss_pred             CceEEEecC
Confidence            988876543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.71  E-value=4.7e-07  Score=78.69  Aligned_cols=126  Identities=17%  Similarity=0.226  Sum_probs=98.8

Q ss_pred             cccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHH
Q 019743          110 EPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       110 ~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~  188 (336)
                      ..+.++|+-.......++...                ..++||||.=||..++..|...| +.+++++|++++..+.+.+
T Consensus        53 ~~m~v~~d~g~fl~~li~~~~----------------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~  116 (237)
T KOG1663|consen   53 SEMLVGPDKGQFLQMLIRLLN----------------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLE  116 (237)
T ss_pred             cceecChHHHHHHHHHHHHhC----------------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHH
Confidence            345556777666666665432                57899999999999999999865 6899999999999999999


Q ss_pred             HHHHhCCC-cEEEEecchhHHHHhhhcC-CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          189 SLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       189 n~~~~~~~-nv~~~~~d~~~~~d~ivsn-pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -.+..|.. .++++++++.+.+|.++.+ .+..+|.+++.   .|        ...|-.+.+++.++|++||.+++
T Consensus       117 ~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvD---ad--------K~nY~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  117 LVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVD---AD--------KDNYSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             HHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEc---cc--------hHHHHHHHHHHHhhcccccEEEE
Confidence            99888875 4999999999988988865 34567766553   33        12334778888899999999998

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.71  E-value=5.2e-08  Score=84.48  Aligned_cols=134  Identities=10%  Similarity=0.105  Sum_probs=98.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+.+|||-|+|-|..++..+++. ..+|+.+|.++..++.|.-|=-..++.  +++++.+|+.+...   +.++.++|.+
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~---~~~D~sfDaI  209 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK---DFDDESFDAI  209 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh---cCCccccceE
Confidence            36799999999999999998883 339999999999999998775444432  57999999976422   2356677765


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-------HHHHHHHHHHHHcCCcceeee
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ...  .|.+   .....+..++|-++++|+|||||+++--++..       +....+.+.|.+.||..+...
T Consensus       210 iHD--PPRf---S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~  276 (287)
T COG2521         210 IHD--PPRF---SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV  276 (287)
T ss_pred             eeC--CCcc---chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence            432  1221   12335667899999999999999999865432       345678889999999865443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.71  E-value=5.1e-07  Score=82.51  Aligned_cols=114  Identities=16%  Similarity=0.250  Sum_probs=80.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+-|=||.+++..+... ..+++.||.|..+++.|++|++.|+++  +++|++.|+++.+..+-.  ...+|.|+
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~--~~~fD~II  200 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK--GGRFDLII  200 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH--TT-EEEEE
T ss_pred             CCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc--CCCCCEEE
Confidence            5799999999999999877653 457999999999999999999999864  799999999886554322  23567766


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +..|  .+.+....-.-.|.+++..+.++|+|||.+++.+.
T Consensus       201 lDPP--sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  201 LDPP--SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             E--S--SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             ECCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            5522  12222111123478899999999999999888654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.69  E-value=4.6e-07  Score=77.69  Aligned_cols=100  Identities=27%  Similarity=0.352  Sum_probs=81.2

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  228 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~  228 (336)
                      +++|||||.|.=++.+|-.+|+.+++.+|.+.+-+...+.-+...+++|++++++.+.+      ...+..+|.++..--
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~------~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE------PEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH------TTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc------cccCCCccEEEeehh
Confidence            79999999999999999999999999999999999999999999999999999999877      124566777665422


Q ss_pred             CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          229 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       229 dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+            ...+++-+.+.|++||.+++.-+.
T Consensus       125 ~~------------l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  125 AP------------LDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             SS------------HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             cC------------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence            11            248889999999999999997654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.69  E-value=4.7e-07  Score=78.53  Aligned_cols=153  Identities=12%  Similarity=0.104  Sum_probs=87.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.. ...++|+|+|+++++.|++       .++.++++|+.+.+.   ..++.++|.++..
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~---~~~~~sfD~Vi~~   82 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLE---AFPDKSFDYVILS   82 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhccc---ccCCCCcCEEEEh
Confidence            4689999999999999888764 5688999999999998854       246788888754211   1245567776654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS  306 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~  306 (336)
                      ..-.+..        ....+++++.+.++   ..++......+.......+. .+.... . .. +     .-.|.....
T Consensus        83 ~~l~~~~--------d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~-~~~~~~-~-~~-~-----~~~~~~~~~  142 (194)
T TIGR02081        83 QTLQATR--------NPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILT-KGRMPV-T-GE-L-----PYDWYNTPN  142 (194)
T ss_pred             hHhHcCc--------CHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHh-CCcccc-C-CC-C-----CccccCCCC
Confidence            3221110        12367777776654   44444433332222222221 121110 0 00 0     001222111


Q ss_pred             --CCCCCHHHHHHHHcCCCeEEEEEE
Q 019743          307 --FGVRSDWEQHVIDRGAPMYRLMLS  330 (336)
Q Consensus       307 --~~~~t~~e~~~~~~G~~i~~~~~~  330 (336)
                        .....++.+.+.+.|+.+....+.
T Consensus       143 ~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       143 IHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             cccCcHHHHHHHHHHCCCEEEEEEEe
Confidence              233457889999999999876654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.67  E-value=1.7e-06  Score=73.60  Aligned_cols=109  Identities=15%  Similarity=0.240  Sum_probs=78.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCC--eEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPG--KLIL  222 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~--~~d~  222 (336)
                      .+.++||+-+|||.+++..+.+. ...++.||.+..++...++|++..+. .+++++..|+...+..    +..  .+|.
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~----~~~~~~FDl  117 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ----LGTREPFDL  117 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh----cCCCCcccE
Confidence            36899999999999999999886 56899999999999999999998884 4789999999853222    222  2565


Q ss_pred             EEeeCCCCCCCcchhhhhcch-HHHHH--HHHhcCcCCcEEEEEeCcH
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE  267 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~-~~~l~--~~~~~LkpgG~l~~~~~~~  267 (336)
                      +++   ||.+...     +.. ..-+.  .-..+|+|+|.+++|++..
T Consensus       118 Vfl---DPPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         118 VFL---DPPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             EEe---CCCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            544   3432211     110 11111  2457899999999999753

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.67  E-value=4.2e-07  Score=81.77  Aligned_cols=121  Identities=14%  Similarity=0.163  Sum_probs=93.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHH--HHhhhcCCCCe--
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATST--FRSIVASYPGK--  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~--~d~ivsnpp~~--  219 (336)
                      ..+||||.||.|...+.....+|.  ..+...|.|+..++..++-+++.|++++ +|.++|+++.  +..+-  |...  
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~--p~P~l~  213 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALD--PAPTLA  213 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccC--CCCCEE
Confidence            568999999999999998888886  7899999999999999999999999986 9999999874  22222  2211  


Q ss_pred             -EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC--cHHHHHHHHHHHHHc
Q 019743          220 -LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEY  280 (336)
Q Consensus       220 -~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~l~~~  280 (336)
                       ++.++-.|+|-.          .....+..+++.|.|||.++. |+  |.++.+.+...|.++
T Consensus       214 iVsGL~ElF~Dn~----------lv~~sl~gl~~al~pgG~lIy-TgQPwHPQle~IAr~LtsH  266 (311)
T PF12147_consen  214 IVSGLYELFPDND----------LVRRSLAGLARALEPGGYLIY-TGQPWHPQLEMIARVLTSH  266 (311)
T ss_pred             EEecchhhCCcHH----------HHHHHHHHHHHHhCCCcEEEE-cCCCCCcchHHHHHHHhcc
Confidence             222333455431          235678899999999999888 44  677777777777665

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.66  E-value=1.2e-08  Score=88.13  Aligned_cols=123  Identities=11%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  227 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~  227 (336)
                      .++||+|||||-.+..|-..  -.+.+|+|||++|++.|.++--   .+  ++.+.|+..+.+   +|.+..+|.|..  
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---YD--~L~~Aea~~Fl~---~~~~er~DLi~A--  194 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---YD--TLYVAEAVLFLE---DLTQERFDLIVA--  194 (287)
T ss_pred             ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---hH--HHHHHHHHHHhh---hccCCcccchhh--
Confidence            57999999999999998766  4579999999999999976521   11  123333332211   122333443321  


Q ss_pred             CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC----cH--------HH---HHHHHHHHHHcCCcceeee
Q 019743          228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IE--------EV---MLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~----~~--------~~---~~~~~~~l~~~g~~~~~~~  288 (336)
                      .|..+..      -..+.++..+...|+|||.|.|.+.    +.        .|   ...+...+...|+..+.+.
T Consensus       195 aDVl~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         195 ADVLPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             hhHHHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence            1111000      0135888999999999999999441    11        11   2257778888888876554

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.65  E-value=7.5e-08  Score=85.02  Aligned_cols=105  Identities=10%  Similarity=0.080  Sum_probs=71.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH------------HhCCCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ------------LSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~------------~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      +.+||..|||.|.-+..||.+  +.+|+|+|+|+.+++.+.+...            .....+++++++|+++. +. -+
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l-~~-~~  119 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL-PK-IA  119 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC-Cc-cc
Confidence            579999999999999999988  6789999999999999866210            01124689999998763 10 00


Q ss_pred             CCCCeEEEEEee---CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          215 SYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       215 npp~~~d~i~~~---~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-..+|.|+-.   ..-|.         ....+.++.+.+.|+|||.+++.+
T Consensus       120 ~~~~~fD~VyDra~~~Alpp---------~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPN---------DLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             cccCCcCeeeeehhHhcCCH---------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence            001234443321   00110         134589999999999999988844

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.65  E-value=6.3e-08  Score=87.61  Aligned_cols=68  Identities=24%  Similarity=0.371  Sum_probs=55.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH----HH---hhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST----FR---SIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~----~d---~ivsnpp~  218 (336)
                      ..+|||||||+|.++..++++.+  .++++|+++.+++.++++...  ..++.++++|+...    +|   .+++|+||
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~~d~~~~vvsNlPy  104 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPDFPKQLKVVSNLPY  104 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhHcCCcceEEEcCCh
Confidence            57899999999999999999874  599999999999999887643  46899999998752    33   45555555

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.63  E-value=2e-07  Score=87.22  Aligned_cols=126  Identities=18%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-------C---CcEEEEecchhH-HHHhhhc
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-------I---TNGYFIATNATS-TFRSIVA  214 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-------~---~nv~~~~~d~~~-~~d~ivs  214 (336)
                      .+..|||||||-|.=+.-..... -..++|+||+...++.|+++.+...       .   -...|+.+|.+. .+...+.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            36799999999777555555443 4689999999999999999984321       1   136778888764 2344443


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHH
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  279 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~  279 (336)
                      .+...+|.+.+.|.-.+.    .....-.+.++..+...|+|||.|+..+..   ...+.+.+.+
T Consensus       141 ~~~~~FDvVScQFalHY~----Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d---~~~i~~~l~~  198 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYA----FESEEKARQFLKNVSSLLKPGGYFIGTTPD---SDEIVKRLRE  198 (331)
T ss_dssp             STTS-EEEEEEES-GGGG----GSSHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCHHC
T ss_pred             ccCCCcceeehHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCEEEEEecC---HHHHHHHHHh
Confidence            233478888877644321    011122468999999999999999997754   3344444444

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.63  E-value=2.1e-07  Score=79.25  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=69.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC---CCcEEEEecchhHHH-HhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~---~~nv~~~~~d~~~~~-d~ivsnpp~~~d  221 (336)
                      .+.+|||||||+|..++.+|+..+..+|+..|.++ .++.++.|++.++   ..++.+...||.+.. ....  .+..+|
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D  121 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFD  121 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBS
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCC
Confidence            36799999999999999999987788999999998 9999999998876   356888888885522 2222  234456


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .|...  |....      ...++.+++.+.+.|+++|.+++..
T Consensus       122 ~Ilas--Dv~Y~------~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  122 VILAS--DVLYD------EELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEEEE--S--S-------GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEEEe--cccch------HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            54432  32211      1245799999999999999987754

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.61  E-value=4e-07  Score=84.22  Aligned_cols=126  Identities=17%  Similarity=0.227  Sum_probs=91.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHH------HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATST------FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~------~d~ivsnpp~~  219 (336)
                      +..+||==||||.+++.....  +++++|+|++..|++-|+.|++..+++...++.. |+...      +|.|+..|||-
T Consensus       198 G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG  275 (347)
T COG1041         198 GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG  275 (347)
T ss_pred             CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence            568999999999999999877  8999999999999999999999998888777666 87652      34444444442


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      ...-.          ....-...+.++++.++++|++||++.|..+..+     ...+.+.+|.......
T Consensus       276 rst~~----------~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-----~~~~~~~~f~v~~~~~  330 (347)
T COG1041         276 RSTKI----------KGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-----RHELEELGFKVLGRFT  330 (347)
T ss_pred             ccccc----------ccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----hhhHhhcCceEEEEEE
Confidence            21100          0000113578999999999999999999876322     2234567888765543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.59  E-value=1.9e-07  Score=86.01  Aligned_cols=100  Identities=15%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ...|||+|||||.+++..|+.. ..+|+|+|-|.-+ +.|.+.+..|++++ ++++++.+.+.   .+  |...+|.+..
T Consensus        61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi---~L--P~eKVDiIvS  133 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI---EL--PVEKVDIIVS  133 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE---ec--CccceeEEee
Confidence            5789999999999999999997 6789999987665 99999999999987 89999988764   23  5455665543


Q ss_pred             eCCCCCCCcchhhhhcchH----HHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQR----SLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~----~~l~~~~~~LkpgG~l~~  262 (336)
                      .+---+         ++++    ..+-.=-++|+|||.++=
T Consensus       134 EWMGy~---------Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  134 EWMGYF---------LLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             hhhhHH---------HHHhhhhhhhhhhhhhccCCCceEcc
Confidence            211111         2222    333444578999998753

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.58  E-value=3.3e-08  Score=92.13  Aligned_cols=136  Identities=21%  Similarity=0.226  Sum_probs=84.5

Q ss_pred             CCeEEEEeccccHHHHHHHHh-------CCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchh--------HHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNAT--------STF  209 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-------~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~--------~~~  209 (336)
                      ..+|+|-+||+|.+.+++.+.       .+..+++|+|+++.++..|+-|+..++..  +..+.++|.+        ..|
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  126 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF  126 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            568999999999999988774       36889999999999999999998776643  3467888874        258


Q ss_pred             HhhhcCCCCeEEEEEe--eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----HHHHHHHHHHHcCC
Q 019743          210 RSIVASYPGKLILVSI--QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQFLEYGK  282 (336)
Q Consensus       210 d~ivsnpp~~~d~i~~--~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~l~~~g~  282 (336)
                      |.+++||||......-  ...+..+........-..-.|+..+.+.|++||++.+.....-     ....+++.+.+.++
T Consensus       127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~  206 (311)
T PF02384_consen  127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENGY  206 (311)
T ss_dssp             EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHEE
T ss_pred             ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhch
Confidence            8999999986431100  0011101100001111123588999999999999877543221     23456666665544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.58  E-value=6.5e-07  Score=85.11  Aligned_cols=100  Identities=15%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             CeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+|||+.||||..++.++++.+ -..|+++|+++.+++.+++|++.++..++.+++.|+...+..    ....+|.|.+ 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl-  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI-  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence            5899999999999999999853 368999999999999999999999988899999999876432    1233565554 


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                        ||. .        ....+++.+.+.++++|.+++.
T Consensus       121 --DPf-G--------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       121 --DPF-G--------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             --CCC-C--------CcHHHHHHHHHhcccCCEEEEE
Confidence              442 1        1127889999999999999994

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.58  E-value=3.9e-07  Score=81.76  Aligned_cols=95  Identities=14%  Similarity=0.215  Sum_probs=70.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|+|||.|+|.++..+++++|+.+++..|. |..++.+++      .++++++.+|.++.    +  |.  .|.+++.
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~----~--P~--~D~~~l~  165 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP----L--PV--ADVYLLR  165 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----C--SS--ESEEEEE
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhh----h--cc--ccceeee
Confidence            46899999999999999999999999999997 888888877      46899999998632    1  33  5655543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCC--cEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg--G~l~~  262 (336)
                      .--      |.-.......+++++++.|+||  |++++
T Consensus       166 ~vL------h~~~d~~~~~iL~~~~~al~pg~~g~llI  197 (241)
T PF00891_consen  166 HVL------HDWSDEDCVKILRNAAAALKPGKDGRLLI  197 (241)
T ss_dssp             SSG------GGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred             hhh------hhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence            211      1001112358999999999999  99998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.54  E-value=1.4e-06  Score=78.43  Aligned_cols=127  Identities=16%  Similarity=0.188  Sum_probs=93.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCC-eE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPG-KL  220 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~-~~  220 (336)
                      +..+||=||-|.|..+..+.+..+..+++.+|+++..++.|++......    -++++++..|+...+..    -+. .+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~~y  151 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEEKY  151 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST-E
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCCcc
Confidence            4678999999999999999877667899999999999999999876532    25799999999876443    233 67


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHc
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  280 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~  280 (336)
                      |.|.+...+|.....    .++.+.|++.+.+.|+|+|.+++....    ......+.+.+.+.
T Consensus       152 DvIi~D~~dp~~~~~----~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~  211 (246)
T PF01564_consen  152 DVIIVDLTDPDGPAP----NLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV  211 (246)
T ss_dssp             EEEEEESSSTTSCGG----GGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred             cEEEEeCCCCCCCcc----cccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence            888888777642211    277899999999999999999986422    23334455555544

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.53  E-value=1.6e-07  Score=93.84  Aligned_cols=73  Identities=16%  Similarity=0.290  Sum_probs=55.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC--------CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch-----------hH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-----------TS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p--------~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~-----------~~  207 (336)
                      ..+|||.|||+|.++++++.+.+        +.+++|+|+++.++..|+.|+...+.-...+...|.           ..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            46899999999999999987653        267999999999999999998776521223332221           12


Q ss_pred             HHHhhhcCCCCe
Q 019743          208 TFRSIVASYPGK  219 (336)
Q Consensus       208 ~~d~ivsnpp~~  219 (336)
                      .||.|+.||||.
T Consensus       112 ~fD~IIgNPPy~  123 (524)
T TIGR02987       112 LFDIVITNPPYG  123 (524)
T ss_pred             cccEEEeCCCcc
Confidence            589999999996

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=4.4e-08  Score=78.76  Aligned_cols=75  Identities=12%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       145 ~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      -++..++|+|||.|.++++.+ ......++|+||++++++.+.+|+.+..++ +.++++|+.+.   ..++  ..+|...
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildl---e~~~--g~fDtav  119 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDL---ELKG--GIFDTAV  119 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccch---hccC--CeEeeEE
Confidence            357889999999999996554 334567999999999999999999987754 68899987643   3433  4567666


Q ss_pred             ee
Q 019743          225 IQ  226 (336)
Q Consensus       225 ~~  226 (336)
                      ++
T Consensus       120 iN  121 (185)
T KOG3420|consen  120 IN  121 (185)
T ss_pred             ec
Confidence            65

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.51  E-value=4.5e-07  Score=78.24  Aligned_cols=105  Identities=19%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE-EEecchhHH-HHhh--hcCCCCeEEEEE
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATST-FRSI--VASYPGKLILVS  224 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~-~~~~d~~~~-~d~i--vsnpp~~~d~i~  224 (336)
                      +|||||||||..+..+|+.+|+.++.-.|.++..+...+..+...+++|+. -+..|+... .+.-  ..+.+..+|.++
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            599999999999999999999999999999999988888888888877743 234444331 0100  001233455544


Q ss_pred             e-eC--CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 I-QC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~-~~--~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      . ++  -.||         .....+|+.+.+.|++||.+++
T Consensus       108 ~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~  139 (204)
T PF06080_consen  108 CINMLHISPW---------SAVEGLFAGAARLLKPGGLLFL  139 (204)
T ss_pred             ehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEE
Confidence            2 11  1122         2346899999999999999998

The function of this family is unknown.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.50  E-value=3e-07  Score=81.57  Aligned_cols=117  Identities=12%  Similarity=0.150  Sum_probs=82.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH----HHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS----TFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~----~~d~ivsnpp~~~d  221 (336)
                      ...|||+|.|||.++..|.+.  ..+|+|+|+++.|+...+++.+....+ .++++++|.+.    .||.+++|-||.++
T Consensus        59 tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqIS  136 (315)
T KOG0820|consen   59 TDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQIS  136 (315)
T ss_pred             CCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCcccc
Confidence            578999999999999999988  789999999999999999887643332 48999999975    48999999999765


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  267 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~  267 (336)
                      .-.+.-.-++....+...-++.+.+.-.+  +-+||-.+|+..+..
T Consensus       137 Sp~vfKLL~~~~~fr~AvlmfQ~Efa~RL--va~pgd~~Ycrlsin  180 (315)
T KOG0820|consen  137 SPLVFKLLLHRPVFRCAVLMFQREFALRL--VARPGDSLYCRLSIN  180 (315)
T ss_pred             CHHHHHhcCCCCCcceeeeehhhhhhhhh--ccCCCCchhceeehh
Confidence            42211000110001112224456665554  567888899866543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.48  E-value=2.4e-06  Score=79.55  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=81.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|+|+=+|-|.+++.+|+...- .|+++|++|.+++..++|++.|++.+ +..+++|+.+....     ...+|.+.+
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-----~~~aDrIim  262 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-----LGVADRIIM  262 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----cccCCEEEe
Confidence            679999999999999999998533 39999999999999999999999987 89999999774211     144677776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +.|..            ..+|+..+.+.+++||.+.+..
T Consensus       263 ~~p~~------------a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         263 GLPKS------------AHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             CCCCc------------chhhHHHHHHHhhcCcEEEEEe
Confidence            65432            1378888999999999999844

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.47  E-value=2.4e-06  Score=78.04  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=92.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+||=||-|.|..+..+++..+-.+++.+||++..++.|++......    -++++++..|..+.+..    .+..+|.
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~~fDv  152 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEEKFDV  152 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCCcCCE
Confidence            459999999999999999999888999999999999999999876543    35799999999876432    2336788


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      |.+...||.    .+...++...|++.+++.|+++|.+...++.
T Consensus       153 Ii~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~  192 (282)
T COG0421         153 IIVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGS  192 (282)
T ss_pred             EEEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            888777772    2344578899999999999999999997544

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.45  E-value=1.9e-07  Score=82.45  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------------hCCCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------------~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      ..+||..|||.|.-+..||.+  +.+|+|+|+|+.+++.|.+....            ....+++++++|.++.-..   
T Consensus        38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~---  112 (218)
T PF05724_consen   38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE---  112 (218)
T ss_dssp             SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS---
T ss_pred             CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh---
Confidence            568999999999999999988  68999999999999998443211            0123578999998763100   


Q ss_pred             CCCCeEEEEEee--C-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          215 SYPGKLILVSIQ--C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       215 npp~~~d~i~~~--~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                       ..+.+|.++=.  + .-|      +   ...+++.+.+.++|+|||.+++
T Consensus       113 -~~g~fD~iyDr~~l~Alp------p---~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  113 -DVGKFDLIYDRTFLCALP------P---EMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             -CHHSEEEEEECSSTTTS-------G---GGHHHHHHHHHHCEEEEEEEEE
T ss_pred             -hcCCceEEEEecccccCC------H---HHHHHHHHHHHHHhCCCCcEEE
Confidence             11236665421  1 111      1   2346899999999999999554

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.44  E-value=3.8e-06  Score=73.33  Aligned_cols=118  Identities=15%  Similarity=0.242  Sum_probs=87.5

Q ss_pred             EEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCe-EEEEEeeC
Q 019743          150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGK-LILVSIQC  227 (336)
Q Consensus       150 vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~-~d~i~~~~  227 (336)
                      |.||||-.|.+.+.|.++..-.+++++|+++..++.|+++++.+++. ++.+..+|-++.+      +|.. +|.+.+.-
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l------~~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL------KPGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc------CCCCCCCEEEEec
Confidence            68999999999999999987778999999999999999999999975 5999999987642      2443 56655531


Q ss_pred             CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                                -......++++.....++..-.|++....  ....+++.|.++||...
T Consensus        75 ----------MGG~lI~~ILe~~~~~~~~~~~lILqP~~--~~~~LR~~L~~~gf~I~  120 (205)
T PF04816_consen   75 ----------MGGELIIEILEAGPEKLSSAKRLILQPNT--HAYELRRWLYENGFEII  120 (205)
T ss_dssp             ----------E-HHHHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred             ----------CCHHHHHHHHHhhHHHhccCCeEEEeCCC--ChHHHHHHHHHCCCEEE
Confidence                      11234568888888888877788886643  46789999999999765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.43  E-value=7e-07  Score=74.67  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHH
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST  208 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~  208 (336)
                      .|+|+.||.|.-++++|+.+  .+|+|+|+++..++.|+.|++-.|. +++.++++|+.+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~   60 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL   60 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence            58999999999999999995  5799999999999999999999996 4899999999875

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.40  E-value=8.3e-07  Score=86.36  Aligned_cols=103  Identities=16%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      ...|+|+|||+|.++...++.    ....+|+|||.|+.|+...++.++.+++ ++|+++++|+.+. +     +|..+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~-----lpekvD  260 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-E-----LPEKVD  260 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-C-----HSS-EE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-C-----CCCcee
Confidence            468999999999998766554    2457999999999999888888778887 5699999999764 1     244556


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                      .++.......      -.....++.+..+.+.|||+|.++
T Consensus       261 IIVSElLGsf------g~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  261 IIVSELLGSF------GDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEE---BTT------BTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEeccCCc------cccccCHHHHHHHHhhcCCCCEEe
Confidence            5543211110      001244678889999999998653

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.38  E-value=1.2e-06  Score=71.90  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +++|+|||.|.++..+++..|..+++++|.++.+++.+++|++.++..++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999999999989999999999999999999999888888888876543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=2.3e-06  Score=81.04  Aligned_cols=136  Identities=17%  Similarity=0.172  Sum_probs=91.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---------HHhhhc
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---------FRSIVA  214 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---------~d~ivs  214 (336)
                      .+.+|||+|++.|.=+..+|+..++  ..|+++|+|+..++..++|+++.|..|+...+.|....         ||.|+-
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl  235 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL  235 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence            3689999999999999999988654  56799999999999999999999999988888887532         333333


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchh---hhhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEH---RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG  281 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g  281 (336)
                      .+|-+-..++-..|+-+......   .-..++.+++..+.+.|||||.+...|-..   +.-+-+...++++.
T Consensus       236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~  308 (355)
T COG0144         236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP  308 (355)
T ss_pred             CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence            33332222221223321111111   112346899999999999999999876432   22224555666653

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=7.9e-07  Score=79.68  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-------HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-------FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-------~d~ivsnpp~~  219 (336)
                      +..|||||+|.|.++..|+++  ..+|+++|+++.+++..++...  ...|++++++|+...       ...+++|-||.
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~  106 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVANLPYN  106 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence            578999999999999999999  4679999999999999988765  347899999999752       35578888886


Q ss_pred             EE
Q 019743          220 LI  221 (336)
Q Consensus       220 ~d  221 (336)
                      +.
T Consensus       107 Is  108 (259)
T COG0030         107 IS  108 (259)
T ss_pred             cc
Confidence            54

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.32  E-value=3.6e-06  Score=76.53  Aligned_cols=126  Identities=15%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CC-----cEEEEecchhH-HHHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-IT-----NGYFIATNATS-TFRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~-----nv~~~~~d~~~-~~d~ivsnpp~~  219 (336)
                      ...++|+|||.|.=++-.-+.. -..++|+||.+-.+++|+++.+... ..     .+.|+.+|.+. .+...+.++.-.
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             ccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            5679999999998777665553 3579999999999999999876542 11     37889999865 344455443333


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  280 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  280 (336)
                      +|.+...|.-.+.-    ....-.+.++.++.+.|+|||.++-.+..   ...+...+.+.
T Consensus       197 fDivScQF~~HYaF----etee~ar~~l~Nva~~LkpGG~FIgTiPd---sd~Ii~rlr~~  250 (389)
T KOG1975|consen  197 FDIVSCQFAFHYAF----ETEESARIALRNVAKCLKPGGVFIGTIPD---SDVIIKRLRAG  250 (389)
T ss_pred             cceeeeeeeEeeee----ccHHHHHHHHHHHHhhcCCCcEEEEecCc---HHHHHHHHHhc
Confidence            67665555432200    00112357889999999999999886654   33444444443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.31  E-value=2e-06  Score=72.26  Aligned_cols=77  Identities=10%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             EEEecChHHHHHHHHHHHHhC---CCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHH
Q 019743          174 LGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  250 (336)
Q Consensus       174 ~giDis~~~l~~a~~n~~~~~---~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~  250 (336)
                      +|+|+|++|++.|+++....+   ..+++++++|+.+.     +-++.++|.+++.+.-.+..        ...++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~--------d~~~~l~ei   67 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVV--------DRLRAMKEM   67 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCC--------CHHHHHHHH
Confidence            489999999999988765322   35799999998763     22455678776654322211        224889999


Q ss_pred             HhcCcCCcEEEEE
Q 019743          251 SDLLVHDGKVFLQ  263 (336)
Q Consensus       251 ~~~LkpgG~l~~~  263 (336)
                      +++|||||.+++.
T Consensus        68 ~rvLkpGG~l~i~   80 (160)
T PLN02232         68 YRVLKPGSRVSIL   80 (160)
T ss_pred             HHHcCcCeEEEEE
Confidence            9999999999873

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.27  E-value=1.6e-06  Score=76.81  Aligned_cols=143  Identities=15%  Similarity=0.065  Sum_probs=78.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHH-HHHHHH--HhCCCcEEEEecchhHHHHhhhcCCCC-eEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH-CRDSLQ--LSGITNGYFIATNATSTFRSIVASYPG-KLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~-a~~n~~--~~~~~nv~~~~~d~~~~~d~ivsnpp~-~~d~  222 (336)
                      +.++||+|||||.++..+++. +..+++|+|+++.|+.. .+++.+  ..+..|++  +.++.+.    .  ++. .+|.
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~----~--~d~~~~Dv  146 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADI----F--PDFATFDV  146 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHc----C--CCceeeeE
Confidence            568999999999999999987 35689999999988875 222211  01222333  1122221    1  222 2343


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCC
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWL  302 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~  302 (336)
                      .++.                ...++..+.+.|+| |.+++-.  .+|++.-.+.....|.     .+|.   +.|     
T Consensus       147 sfiS----------------~~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~gi-----v~~~---~~~-----  194 (228)
T TIGR00478       147 SFIS----------------LISILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGV-----VRDK---EAI-----  194 (228)
T ss_pred             EEee----------------hHhHHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCe-----ecCH---HHH-----
Confidence            3332                12467888899999 8776644  3455543332222222     1220   001     


Q ss_pred             CCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 019743          303 GENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  334 (336)
Q Consensus       303 ~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~  334 (336)
                          .....+....+.+.|+.+..++.-+++|
T Consensus       195 ----~~~~~~~~~~~~~~~~~~~~~~~s~i~G  222 (228)
T TIGR00478       195 ----ALALHKVIDKGESPDFQEKKIIFSLTKG  222 (228)
T ss_pred             ----HHHHHHHHHHHHcCCCeEeeEEECCCCC
Confidence                0223344555556677777666665544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK04148 hypothetical protein; Provisional

Probab=98.27  E-value=5.2e-06  Score=67.05  Aligned_cols=52  Identities=13%  Similarity=0.240  Sum_probs=43.3

Q ss_pred             CCeEEEEeccccH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~-~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +.+++|||||+|. ++..|++.  +..|+|+|+++.+++.|+++    +   +.++++|+++
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~   69 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN   69 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence            4689999999995 88888876  68999999999998888654    2   5788888865

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.20  E-value=6.1e-06  Score=75.30  Aligned_cols=99  Identities=18%  Similarity=0.313  Sum_probs=67.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..|||+|||||.++...|+.. ..+|+++|-| +|.+.|++-++.+++. ++.++.+-+++.     + -|..+|.+. 
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-----e-LPEk~DviI-  248 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-----E-LPEKVDVII-  248 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-----c-CchhccEEE-
Confidence            5689999999999999888875 5789999975 6889999988877664 688888877653     1 133344332 


Q ss_pred             eCCCCCCCcchhhhhcchHHHHH---HHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVE---AVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~---~~~~~LkpgG~l~~  262 (336)
                      .-|...        .++.++.++   .++++|+|.|.++=
T Consensus       249 SEPMG~--------mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  249 SEPMGY--------MLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             eccchh--------hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            112111        123333333   35689999998764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.19  E-value=4.2e-05  Score=71.94  Aligned_cols=107  Identities=13%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             CeEEEEeccccHHHHHHHHhCCC--------------------------------C-------eEEEEecChHHHHHHHH
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKD--------------------------------L-------NFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~--------------------------------~-------~v~giDis~~~l~~a~~  188 (336)
                      ..++|-=||||.+++..|...++                                +       .++|+|+++.+++.|+.
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~  272 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA  272 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence            46899999999999999987642                                2       27799999999999999


Q ss_pred             HHHHhCCCc-EEEEecchhH------HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          189 SLQLSGITN-GYFIATNATS------TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       189 n~~~~~~~n-v~~~~~d~~~------~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                      |+++.|+.. +.|.+.|+..      .++.++|||||-.-     ..+.      .....+|+.|.+.+.+.++--+..+
T Consensus       273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-----lg~~------~~v~~LY~~fg~~lk~~~~~ws~~v  341 (381)
T COG0116         273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-----LGSE------ALVAKLYREFGRTLKRLLAGWSRYV  341 (381)
T ss_pred             HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-----cCCh------hhHHHHHHHHHHHHHHHhcCCceEE
Confidence            999999864 9999999864      36778899998532     1111      1122368899999999998888888


Q ss_pred             EEeC
Q 019743          262 LQSD  265 (336)
Q Consensus       262 ~~~~  265 (336)
                      |.++
T Consensus       342 ~tt~  345 (381)
T COG0116         342 FTTS  345 (381)
T ss_pred             EEcc
Confidence            8664

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.18  E-value=3.3e-05  Score=71.03  Aligned_cols=131  Identities=15%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..|||+|+|.|.=+..+|...+ ...+++.|+++..+...++|+++.|..++.....|.........   ...+|.+.+
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vlv  162 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVLV  162 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEEE
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhhc
Confidence            57899999999999999998865 78999999999999999999999999999999888876533222   334777776


Q ss_pred             eCCCCC----CCcchhh----------hhcchHHHHHHHHhcC----cCCcEEEEEeCcHH---HHHHHHHHHHHc
Q 019743          226 QCPNPD----FNRPEHR----------WRMVQRSLVEAVSDLL----VHDGKVFLQSDIEE---VMLRMKQQFLEY  280 (336)
Q Consensus       226 ~~~dp~----~~~~~~~----------~~l~~~~~l~~~~~~L----kpgG~l~~~~~~~~---~~~~~~~~l~~~  280 (336)
                      .-|-..    .+.+..+          -...+.++++.+.+.+    ||||+++..|-...   .-+-+...++++
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~  238 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH  238 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence            543321    1111100          0123689999999999    99999999774321   122344455555

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.18  E-value=1.8e-05  Score=69.24  Aligned_cols=124  Identities=21%  Similarity=0.168  Sum_probs=90.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+++|||+|.|.=++.||-.+|+.+++-+|...+.+...+.-..+.+++|++++++.+++.-.    .+++ +|.+...
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~----~~~~-~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ----EKKQ-YDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc----cccc-CcEEEee
Confidence            4689999999999999999999999999999999999999998999999999999999887411    0222 4544432


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE--eCcHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      --.            -...+++-+..+|++||.+.+.  ....++..+..+.....++....+
T Consensus       143 Ava------------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~  193 (215)
T COG0357         143 AVA------------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV  193 (215)
T ss_pred             hcc------------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence            100            1237778888999999987431  122344555666666666665433

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.3e-05  Score=68.69  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhC----------CCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSG----------ITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~----------~~nv~~~~~d~~~~~d~ivs  214 (336)
                      +...||+|+|||.++..+|..  .+....+|||.-++.++.+++|+.+.-          ..++.++.+|....+..   
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e---  159 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE---  159 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc---
Confidence            678999999999999998865  355556999999999999999987643          13477788887654211   


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +.||  |.|++.-..+              ++-+++-..|++||++++...
T Consensus       160 ~a~Y--DaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  160 QAPY--DAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             cCCc--ceEEEccCcc--------------ccHHHHHHhhccCCeEEEeec
Confidence            1233  7777653222              445666778999999999654

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.17  E-value=1.9e-06  Score=78.88  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-CCC-cEEEEecch----h-------HHHHhhh
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIATNA----T-------STFRSIV  213 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~~~-nv~~~~~d~----~-------~~~d~iv  213 (336)
                      ..++||||||.-||=-.|+.+..+++++|+||++.+++.|++|++++ +++ ++++++..-    +       +.||..+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            46899999999887544443334899999999999999999999999 775 577765422    1       1366667


Q ss_pred             cCCCC
Q 019743          214 ASYPG  218 (336)
Q Consensus       214 snpp~  218 (336)
                      +|||+
T Consensus       183 CNPPF  187 (299)
T PF05971_consen  183 CNPPF  187 (299)
T ss_dssp             E----
T ss_pred             cCCcc
Confidence            77775

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.16  E-value=1e-05  Score=74.34  Aligned_cols=60  Identities=12%  Similarity=0.140  Sum_probs=53.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +..++|.+||.|..+..+++..| +.+|+|+|+++.|++.|++++..  .++++++++|..+.
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l   80 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL   80 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence            56899999999999999999985 78999999999999999988765  46899999998764

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.13  E-value=9.9e-05  Score=65.82  Aligned_cols=121  Identities=16%  Similarity=0.129  Sum_probs=79.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..++||||.|.|..+..++..+.  +|++.|.|+.|....+    +.|.+   ++..+-.       .+-+..+|.|...
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~----~kg~~---vl~~~~w-------~~~~~~fDvIscL  158 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLS----KKGFT---VLDIDDW-------QQTDFKFDVISCL  158 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHH----hCCCe---EEehhhh-------hccCCceEEEeeh
Confidence            56899999999999999999874  5999999999966543    34432   3322211       1123445655432


Q ss_pred             -CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE----------EeC-----------------cHHHHHHHHHHHH
Q 019743          227 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL----------QSD-----------------IEEVMLRMKQQFL  278 (336)
Q Consensus       227 -~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~----------~~~-----------------~~~~~~~~~~~l~  278 (336)
                       ..|-..         --..+++.+++.|+|+|++++          |.+                 ++++...+.+.|+
T Consensus       159 NvLDRc~---------~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~  229 (265)
T PF05219_consen  159 NVLDRCD---------RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFE  229 (265)
T ss_pred             hhhhccC---------CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHH
Confidence             222110         013899999999999999988          222                 1234444557788


Q ss_pred             HcCCcceeeecccc
Q 019743          279 EYGKGKLVLVQDEC  292 (336)
Q Consensus       279 ~~g~~~~~~~~d~~  292 (336)
                      ..||+....++=+|
T Consensus       230 p~GF~v~~~tr~PY  243 (265)
T PF05219_consen  230 PAGFEVERWTRLPY  243 (265)
T ss_pred             hcCCEEEEEeccCc
Confidence            88888777666555

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.12  E-value=8.8e-05  Score=61.49  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc-CCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs-npp~~~d~i~  224 (336)
                      +.-|||+|.|||.++-++.++ .++..++++|.|++.+....+.     .+.++++.+|++.. +..++ .+...+|.++
T Consensus        49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l-~~~l~e~~gq~~D~vi  122 (194)
T COG3963          49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDL-RTTLGEHKGQFFDSVI  122 (194)
T ss_pred             CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhH-HHHHhhcCCCeeeeEE
Confidence            457999999999999998776 5788999999999998877553     24577999999764 21111 1233466655


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...|--.  .+- +   ..-++++.+...|.+||.++.-+
T Consensus       123 S~lPll~--~P~-~---~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         123 SGLPLLN--FPM-H---RRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             ecccccc--CcH-H---HHHHHHHHHHHhcCCCCeEEEEE
Confidence            4322211  010 1   12388999999999999887744

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.10  E-value=3.9e-05  Score=71.42  Aligned_cols=113  Identities=11%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHHhCCCcEEE--EecchhHHHHhhhcCC--CC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF--IATNATSTFRSIVASY--PG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~----p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~--~~~d~~~~~d~ivsnp--p~  218 (336)
                      ...++|+|||+|.=+..|....    ...+++++|||.++++.+.+++.....+++.+  +++|..+.++. +++|  +.
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~-l~~~~~~~  155 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW-LKRPENRS  155 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh-cccccccC
Confidence            4579999999998766554432    35789999999999999999987445566555  88887665433 2222  11


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHh-cCcCCcEEEEEeC
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSD  265 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~-~LkpgG~l~~~~~  265 (336)
                      ....++  |+-.......+   .-...|++.+.+ .|+|||.+++-.|
T Consensus       156 ~~r~~~--flGSsiGNf~~---~ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       156 RPTTIL--WLGSSIGNFSR---PEAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             CccEEE--EeCccccCCCH---HHHHHHHHHHHHhhCCCCCEEEEecC
Confidence            112211  11111111111   122489999999 9999999999544

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.90  E-value=2.8e-05  Score=67.43  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             CCeEEEEeccccH----HHHHHHHh----CC-CCeEEEEecChHHHHHHHHHH--------------HHh-----C----
Q 019743          147 QPLVVDIGSGNGL----FLLGMARK----RK-DLNFLGLEVNGKLVTHCRDSL--------------QLS-----G----  194 (336)
Q Consensus       147 ~~~vLDiGcGsG~----~~~~la~~----~p-~~~v~giDis~~~l~~a~~n~--------------~~~-----~----  194 (336)
                      ..+|+..||+||.    +++.+...    .+ +.+++|+|||+.+++.|++-.              ++.     +    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            4689999999996    33334441    12 479999999999999997621              000     0    


Q ss_pred             -----CCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          195 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       195 -----~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                           ..+|+|.+.|+.+.     ..++..+|.|+...---++.      .....++++.+++.|+|||.+++-
T Consensus       112 v~~~lr~~V~F~~~NL~~~-----~~~~~~fD~I~CRNVlIYF~------~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDP-----DPPFGRFDLIFCRNVLIYFD------PETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-------HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             EChHHcCceEEEecccCCC-----CcccCCccEEEecCEEEEeC------HHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 02366666665541     11334577765532111111      113468999999999999999983

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.88  E-value=3.4e-05  Score=66.59  Aligned_cols=109  Identities=7%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +...|.|+|||.+.++.++.   ...+|+..|+-..            + +  .+..+|+...     +-++.++|.++.
T Consensus        72 ~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~------------n-~--~Vtacdia~v-----PL~~~svDv~Vf  128 (219)
T PF05148_consen   72 KSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP------------N-P--RVTACDIANV-----PLEDESVDVAVF  128 (219)
T ss_dssp             TTS-EEEES-TT-HHHHH-----S---EEEEESS-S------------S-T--TEEES-TTS------S--TT-EEEEEE
T ss_pred             CCEEEEECCCchHHHHHhcc---cCceEEEeeccCC------------C-C--CEEEecCccC-----cCCCCceeEEEE
Confidence            35689999999999986653   2357999997532            1 2  2556777442     225667776543


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe-Cc-HHHHHHHHHHHHHcCCccee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI-EEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~-~~-~~~~~~~~~~l~~~g~~~~~  286 (336)
                      ...--         .-.+..++.++.|+|||||.+.+.- -. -.-.+...+.+...||....
T Consensus       129 cLSLM---------GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~  182 (219)
T PF05148_consen  129 CLSLM---------GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS  182 (219)
T ss_dssp             ES------------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred             Ehhhh---------CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence            21110         0135699999999999999999932 11 11234566778888998653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.82  E-value=3.8e-05  Score=70.46  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             CCeEEEEeccccH----HHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHH----hCC-------------------
Q 019743          147 QPLVVDIGSGNGL----FLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQL----SGI-------------------  195 (336)
Q Consensus       147 ~~~vLDiGcGsG~----~~~~la~~~p----~~~v~giDis~~~l~~a~~n~~~----~~~-------------------  195 (336)
                      .-+|+..||+||.    +++.++...+    +.+++|+|||+.+++.|++-.-.    .++                   
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3689999999996    3343444322    46899999999999999874200    000                   


Q ss_pred             --------CcEEEEecchhHHHHhhhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          196 --------TNGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       196 --------~nv~~~~~d~~~~~d~ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                              ..|+|.+.|+.+.     +.| +..+|.|+....-.++.      .....++++.+++.|+|||++++-+
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~-----~~~~~~~fD~I~cRNvliyF~------~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAK-----QWAVPGPFDAIFCRNVMIYFD------KTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCC-----CCccCCCcceeeHhhHHhcCC------HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                    1244444444320     001 23466554421111110      1134689999999999999988843

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.82  E-value=3.3e-05  Score=59.95  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             EEEeccccHHHHHHHHhCCCC---eEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          151 VDIGSGNGLFLLGMARKRKDL---NFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       151 LDiGcGsG~~~~~la~~~p~~---~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      |||||..|..++.+++..+..   +++++|..+. .+.+++.+++.++ .++++++++..+.+..+-   ...+|.+++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iD   76 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFID   76 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEEC
Confidence            699999999999998875443   6999999986 4444455554454 469999999987655432   3456777765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..        |. ......-++.+.+.|+|||.+++
T Consensus        77 g~--------H~-~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   77 GD--------HS-YEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             S------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CC--------CC-HHHHHHHHHHHHHHcCCCeEEEE
Confidence            21        11 01234667888999999999887

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.82  E-value=4.8e-05  Score=62.48  Aligned_cols=60  Identities=30%  Similarity=0.443  Sum_probs=49.6

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHHHhC--C-CcEEEEecchh
Q 019743          147 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSG--I-TNGYFIATNAT  206 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~~~~--~-~nv~~~~~d~~  206 (336)
                      ...|+|+|||.|.++..|+..    .++.+|+|+|.++..++.|.++.++.+  . .++.+..++..
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA   92 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence            568999999999999999981    278999999999999999999988776  3 45666665543

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.82  E-value=4.8e-05  Score=65.76  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=54.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTF  209 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~  209 (336)
                      .++|+|.-||.|.-++..|.++  ..|++||++|.-+..|+.|++-.|++ ++.|+++|+++.+
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~  156 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA  156 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence            5789999999999999999885  57999999999999999999999985 6999999998753

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.82  E-value=3.4e-05  Score=70.15  Aligned_cols=57  Identities=18%  Similarity=0.320  Sum_probs=49.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +..|+|||+|.|.++..|++..  .+++++|+++.+++..+++..  ..+|++++++|+..
T Consensus        31 ~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~   87 (262)
T PF00398_consen   31 GDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLK   87 (262)
T ss_dssp             TSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTT
T ss_pred             CCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhc
Confidence            5789999999999999999886  899999999999999887665  34689999999976

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.79  E-value=9.8e-05  Score=64.48  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=58.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH-------hC--CCcEEEEecchhH--HHHhhhcC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-------SG--ITNGYFIATNATS--TFRSIVAS  215 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~-------~~--~~nv~~~~~d~~~--~~d~ivsn  215 (336)
                      ...++|||||.|...+..|...+-.+.+|||+.+...+.|+...+.       .+  ...+.+.++|..+  ..+.+++.
T Consensus        43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~  122 (205)
T PF08123_consen   43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD  122 (205)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred             CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence            5789999999999999988877555699999999998888765432       23  2458889999864  23444442


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                          .+.++++.-  .+.   .   ....++ .+....||+|-+++-
T Consensus       123 ----AdvVf~Nn~--~F~---~---~l~~~L-~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  123 ----ADVVFVNNT--CFD---P---DLNLAL-AELLLELKPGARIIS  156 (205)
T ss_dssp             -----SEEEE--T--TT----H---HHHHHH-HHHHTTS-TT-EEEE
T ss_pred             ----CCEEEEecc--ccC---H---HHHHHH-HHHHhcCCCCCEEEE
Confidence                244444311  000   0   112233 455567888877664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.77  E-value=0.00076  Score=58.91  Aligned_cols=126  Identities=17%  Similarity=0.172  Sum_probs=86.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLIL  222 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~  222 (336)
                      .+.+||-+|..||.....++.- .|+..|+|+|.|+...+..-.-+++  .+|+--+..|+..  .+..++    ..+|.
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~P~~Y~~lv----~~VDv  146 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARHPEKYRMLV----EMVDV  146 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTSGGGGTTTS------EEE
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCChHHhhccc----ccccE
Confidence            3679999999999999999887 4689999999999876666544443  3789999999964  244333    25677


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceee
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ++.....|.          -.+-++.++...||+||.+++..         +....+....+.|++.+|...+.
T Consensus       147 I~~DVaQp~----------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~  210 (229)
T PF01269_consen  147 IFQDVAQPD----------QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ  210 (229)
T ss_dssp             EEEE-SSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             EEecCCChH----------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE
Confidence            766544332          22456778888999999998843         22233445566677778887544

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.72  E-value=0.00012  Score=64.87  Aligned_cols=126  Identities=11%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             HhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec
Q 019743          124 STITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT  203 (336)
Q Consensus       124 ~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~  203 (336)
                      ..++..+..|.-++....-.++++.+|.|+|||-+.++..   .  ...|+..|+-+.               |-+++.+
T Consensus       158 ~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~---~--~~kV~SfDL~a~---------------~~~V~~c  217 (325)
T KOG3045|consen  158 SQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS---E--RHKVHSFDLVAV---------------NERVIAC  217 (325)
T ss_pred             HHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc---c--ccceeeeeeecC---------------CCceeec
Confidence            3444445444444333333344577899999999998762   2  346888886421               2345666


Q ss_pred             chhHHHHhhhcCCCCeEEEEEee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---CcHHHHHHHHHHHHH
Q 019743          204 NATSTFRSIVASYPGKLILVSIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLE  279 (336)
Q Consensus       204 d~~~~~d~ivsnpp~~~d~i~~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~~l~~  279 (336)
                      |+...     +-++.++|.++.. ....          .....|+.++.|+|++||.+++.-   -..+ ...+.+.+..
T Consensus       218 Dm~~v-----Pl~d~svDvaV~CLSLMg----------tn~~df~kEa~RiLk~gG~l~IAEv~SRf~d-v~~f~r~l~~  281 (325)
T KOG3045|consen  218 DMRNV-----PLEDESVDVAVFCLSLMG----------TNLADFIKEANRILKPGGLLYIAEVKSRFSD-VKGFVRALTK  281 (325)
T ss_pred             cccCC-----cCccCcccEEEeeHhhhc----------ccHHHHHHHHHHHhccCceEEEEehhhhccc-HHHHHHHHHH
Confidence            76542     2245566643321 1000          124689999999999999999932   1222 2236667788


Q ss_pred             cCCcce
Q 019743          280 YGKGKL  285 (336)
Q Consensus       280 ~g~~~~  285 (336)
                      .||...
T Consensus       282 lGF~~~  287 (325)
T KOG3045|consen  282 LGFDVK  287 (325)
T ss_pred             cCCeee
Confidence            899854

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.70  E-value=5.5e-05  Score=68.56  Aligned_cols=42  Identities=7%  Similarity=0.139  Sum_probs=34.7

Q ss_pred             CCeEEEEeccccH----HHHHHHHhCC-----CCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGsG~----~~~~la~~~p-----~~~v~giDis~~~l~~a~~  188 (336)
                      .-+|.-.||+||.    +++.|.+..|     ..+++|+|||..+++.|++
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            4689999999995    5666666664     5899999999999999975

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.69  E-value=6.2e-05  Score=63.49  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=53.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      ...+.|+|+|||.++...|+.  .-+|++||.+|...+.|.+|+.-.|..|+.++.+|+...
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y   92 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY   92 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence            367899999999999888877  578999999999999999999888888999999999763

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.69  E-value=9.6e-05  Score=63.19  Aligned_cols=107  Identities=17%  Similarity=0.185  Sum_probs=63.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGK  219 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~  219 (336)
                      +..++||+||+.|.++..++++. +..+|+|+|+.+.           ....++.++++|..+.     +...+......
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            35789999999999999999886 6799999999876           2346778888887531     12222111235


Q ss_pred             EEEEEeeCCCCCCCcc---hhh-hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          220 LILVSIQCPNPDFNRP---EHR-WRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~---~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +|.+.....-......   +.. .++. ...+..+...|+|||.+++..
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEE
T ss_pred             cceeccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEe
Confidence            6665544311110000   111 1222 233446678899999888855

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.62  E-value=0.00017  Score=62.86  Aligned_cols=104  Identities=16%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCC-CeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp-~~~d~i~~  225 (336)
                      ..+.||.|+|-|.++..+.... -.+|-.+|..+..++.|++........-..+.+..+.+.    .  |+ ..+|.|++
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~--P~~~~YDlIW~  128 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----T--PEEGKYDLIWI  128 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------TT-EEEEEE
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----c--CCCCcEeEEEe
Confidence            5689999999999998775443 357999999999999998765442222356666666543    1  43 57899988


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+...    .  ..-+|++.+...|+|+|.+++.
T Consensus       129 QW~lghLTD----~--dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  129 QWCLGHLTD----E--DLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-GGGS-H----H--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hHhhccCCH----H--HHHHHHHHHHHhCcCCcEEEEE
Confidence            754333111    1  1238999999999999999993

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.54  E-value=0.0011  Score=60.01  Aligned_cols=117  Identities=8%  Similarity=-0.075  Sum_probs=79.4

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CC--CcEEEEecchhHHHHhhhcCCCCeE
Q 019743          145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       145 ~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~--~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      ++..+||=||-|-|..+..+.+. |. +++-+||++++++.|++.....  +.  ++++++..        +..+....+
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--------~~~~~~~~f  140 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--------LLDLDIKKY  140 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--------hhhccCCcC
Confidence            35679999999999999999876 44 9999999999999999854332  12  35666541        112223456


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCcce
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~  285 (336)
                      |.|.+....             .+.|.+.+++.|+|||.+..++...    +....+.+.+.+ .|..+
T Consensus       141 DVIIvDs~~-------------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v  195 (262)
T PRK00536        141 DLIICLQEP-------------DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIA  195 (262)
T ss_pred             CEEEEcCCC-------------ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCce
Confidence            766665322             2478899999999999999965432    233345555554 46543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.53  E-value=0.0016  Score=60.59  Aligned_cols=130  Identities=15%  Similarity=0.203  Sum_probs=94.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHh---C--C--CcEEEEecchhHHHHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLS---G--I--TNGYFIATNATSTFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~---~--~--~nv~~~~~d~~~~~d~ivsnpp~  218 (336)
                      ..++|=+|-|.|--+..+.+ +| -.+++-+|.+|+|++.++.+....   +  .  ++++++..|+++.+..    ...
T Consensus       290 a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~~  364 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AAD  364 (508)
T ss_pred             cceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hcc
Confidence            56899999999988887765 45 678999999999999999654321   1  2  3599999999876433    223


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH----HHHHHHHHHHHcCCcc
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLEYGKGK  284 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~l~~~g~~~  284 (336)
                      .+|.+.+.+|||...   ...|+...+|-..+.+.|+++|.+.++.+..-    .+-.+...+++.||..
T Consensus       365 ~fD~vIVDl~DP~tp---s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~  431 (508)
T COG4262         365 MFDVVIVDLPDPSTP---SIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRV  431 (508)
T ss_pred             cccEEEEeCCCCCCc---chhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCccee
Confidence            568888889998622   12356677999999999999999999765321    1224556677777653

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.52  E-value=0.00064  Score=60.10  Aligned_cols=122  Identities=13%  Similarity=0.143  Sum_probs=72.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--------HHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--------FRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--------~d~ivsnpp~  218 (336)
                      +.+||=+|=.- ..++++|...+..+++.+||++..++..++.+++.|++ ++.++.|+...        ||.++.+|||
T Consensus        45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDPPy  122 (243)
T PF01861_consen   45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDPPY  122 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred             CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence            56788887333 46677777777789999999999999999999999987 99999998653        4444444444


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc-EEEEEeCcHH----HHHHHHHHHHHcCCcceeeecc
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEE----VMLRMKQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG-~l~~~~~~~~----~~~~~~~~l~~~g~~~~~~~~d  290 (336)
                      .++                    -..-|+......||..| ..++.....+    ....+++.+.+.|+....+..|
T Consensus       123 T~~--------------------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~  179 (243)
T PF01861_consen  123 TPE--------------------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPD  179 (243)
T ss_dssp             SHH--------------------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred             CHH--------------------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence            221                    12467788888898766 6666443322    2346888899999877666544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.51  E-value=0.00089  Score=62.11  Aligned_cols=154  Identities=14%  Similarity=0.136  Sum_probs=89.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      -...+|+|.|.|.++-.+...+|.  +-+++.+...+-.++.+.. .|   |..+.+|.++.    +  |..  |.|++.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~----~--P~~--daI~mk  243 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQD----T--PKG--DAIWMK  243 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC---cceeccccccc----C--CCc--CeEEEE
Confidence            467899999999999999998887  6677777777776666553 33   66778887542    3  555  344443


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS  306 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~  306 (336)
                      ..-.+...      ..--+|++++++.|+|+|.+++.-...+. +....    .-...+....|.+.. .+    ....-
T Consensus       244 WiLhdwtD------edcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~d----d~~s~v~~~~d~lm~-~~----~~~Gk  307 (342)
T KOG3178|consen  244 WILHDWTD------EDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFD----DIDSSVTRDMDLLML-TQ----TSGGK  307 (342)
T ss_pred             eecccCCh------HHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCcc----ccccceeehhHHHHH-HH----hccce
Confidence            22111110      11248999999999999999983221110 00000    000000011110000 00    00011


Q ss_pred             CCCCCHHHHHHHHcCCCeEEEEEE
Q 019743          307 FGVRSDWEQHVIDRGAPMYRLMLS  330 (336)
Q Consensus       307 ~~~~t~~e~~~~~~G~~i~~~~~~  330 (336)
                      .....+||..+.+.|++.+...++
T Consensus       308 ert~~e~q~l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  308 ERTLKEFQALLPEEGFPVCMVALT  331 (342)
T ss_pred             eccHHHHHhcchhhcCceeEEEec
Confidence            245578999999999999987654

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.50  E-value=0.0017  Score=52.15  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             EEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCC-CeEEEEEee
Q 019743          150 VVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYP-GKLILVSIQ  226 (336)
Q Consensus       150 vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp-~~~d~i~~~  226 (336)
                      ++|+|||+|... .++...+. ..++|+|+++.++..++..... ...+ +.+...|....   ....+. ..+|.+ ..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGG---VLPFEDSASFDLV-IS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccC---CCCCCCCCceeEE-ee
Confidence            999999999977 44444433 4899999999999985555433 2222 67777776541   111122 245554 32


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ....+.     .   .....+..+.+.|+|+|.+.+...
T Consensus       126 ~~~~~~-----~---~~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         126 LLVLHL-----L---PPAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             eeehhc-----C---CHHHHHHHHHHhcCCCcEEEEEec
Confidence            211110     0   035888999999999999988543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.48  E-value=0.00073  Score=58.39  Aligned_cols=105  Identities=13%  Similarity=0.041  Sum_probs=76.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+||++|.|-|.+...+-.+.|.. .+-||..++.++..+.+.-.. -.||..+.+-|.+.++.+   |+..||.|+.
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L---~d~~FDGI~y  175 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTL---PDKHFDGIYY  175 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCcc-eEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccc---cccCcceeEe
Confidence            47899999999999988887666655 456799999998887765332 368999999988765443   4666887765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      .--.+.        -...+.+.+.+.++|||+|.+.+-
T Consensus       176 DTy~e~--------yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  176 DTYSEL--------YEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             echhhH--------HHHHHHHHHHHhhhcCCCceEEEe
Confidence            311111        023357888999999999999883

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.0042  Score=53.34  Aligned_cols=127  Identities=19%  Similarity=0.200  Sum_probs=89.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~i  223 (336)
                      ++.+||=||..||....+++.-.++..++|+|.|+......-.-+++  ..|+--+..|+..  .+..++    ..+|.+
T Consensus        76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~Y~~~V----e~VDvi  149 (231)
T COG1889          76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEKYRHLV----EKVDVI  149 (231)
T ss_pred             CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHHhhhhc----ccccEE
Confidence            57899999999999999999988889999999999987776665554  3688888899864  344444    135666


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceeee
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      +.....|.          -.+-+..++...||+||.+++..         +....+..-.+.|++.+|...+..
T Consensus       150 y~DVAQp~----------Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~  213 (231)
T COG1889         150 YQDVAQPN----------QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVV  213 (231)
T ss_pred             EEecCCch----------HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEe
Confidence            55433332          12356778889999999666621         333445545566777888766543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.43  E-value=0.00032  Score=69.35  Aligned_cols=117  Identities=17%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchh-----------HHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNAT-----------STFR  210 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p----~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~-----------~~~d  210 (336)
                      ..+|.|-.||||.+.+..++...    +..++|.|+++.....|+-|.-.++.. ++...++|..           ..||
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D  266 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD  266 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence            44899999999999888776542    377999999999999999999988876 3455555432           1377


Q ss_pred             hhhcCCCCeEEEEE-eeCCCCCCCc----chhh-hhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          211 SIVASYPGKLILVS-IQCPNPDFNR----PEHR-WRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       211 ~ivsnpp~~~d~i~-~~~~dp~~~~----~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      .+++|||++.+... ......+...    .... .---...+++.+...|+|||+..+.
T Consensus       267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence            88999999632111 1000000000    0000 0011258999999999999877663

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.42  E-value=0.0012  Score=62.45  Aligned_cols=117  Identities=14%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|+-.|.=+..+|... ....++|.|.+...+.....|+.++|.+|......|..++-..++  |+ +||.|.
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~--~~-~fDRVL  317 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF--PG-SFDRVL  317 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc--Cc-ccceee
Confidence            47899999999998887777663 357899999999999999999999999998888888865312233  45 788877


Q ss_pred             eeCCCC---------CCCcchhh-----hhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          225 IQCPNP---------DFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       225 ~~~~dp---------~~~~~~~~-----~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +.-|-.         ..+.....     ....+++++..+.+.+++||.+.-.|-
T Consensus       318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            653321         11111100     112468999999999999999988663

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.40  E-value=0.0021  Score=55.92  Aligned_cols=121  Identities=10%  Similarity=0.079  Sum_probs=92.0

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+.||||-.|.+.+.|.+.++...+++.|+++..++.|.+|+.++++. .+....+|.+..+   -  +...+|.+++.
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l---~--~~d~~d~ivIA   92 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL---E--LEDEIDVIVIA   92 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc---C--ccCCcCEEEEe
Confidence            4499999999999999999999999999999999999999999998864 5777777765421   1  23345555543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      -.          .......++++-.+.|+.-=++++...  ....++++.+..++|...
T Consensus        93 GM----------GG~lI~~ILee~~~~l~~~~rlILQPn--~~~~~LR~~L~~~~~~I~  139 (226)
T COG2384          93 GM----------GGTLIREILEEGKEKLKGVERLILQPN--IHTYELREWLSANSYEIK  139 (226)
T ss_pred             CC----------cHHHHHHHHHHhhhhhcCcceEEECCC--CCHHHHHHHHHhCCceee
Confidence            11          123457899999998876667777543  346788899999998764

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.34  E-value=0.0085  Score=54.67  Aligned_cols=60  Identities=13%  Similarity=0.177  Sum_probs=52.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      ....+|.=-|-|.++..+.+.+|. .+++|+|.++.+++.|++.....+ .++.+++++...
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~   84 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFAN   84 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHH
Confidence            478999989999999999999875 559999999999999999987765 689999987654

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.0024  Score=55.37  Aligned_cols=108  Identities=18%  Similarity=0.216  Sum_probs=66.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCe-EE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGK-LI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~-~d  221 (336)
                      ++.+|+|||+-.|.++..+++.. +...|+|+|+.|-.           ...+|.++++|+..  .++.+...-+.. +|
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D  113 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD  113 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence            36899999999999999998884 45669999998742           24579999999864  222222211222 24


Q ss_pred             EEEeeC-CCCC-CCcchhh-hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          222 LVSIQC-PNPD-FNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       222 ~i~~~~-~dp~-~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .+...+ |+.. ....+|. ....-...++-+..+|+|||.+.+..
T Consensus       114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence            433221 2111 0011111 11223566777888999999999844

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.0022  Score=59.92  Aligned_cols=99  Identities=14%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|+|-=+|||.=++.+|.+.+...++.-|+||++++.+++|++.|...+...+..|+...+.   +|. ..+|.|.+.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~---~~~-~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH---ELH-RAFDVIDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH---hcC-CCccEEecC
Confidence            4579999999999999999998777999999999999999999998855677777788876532   222 345655442


Q ss_pred             -CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 -~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                       |-.|-             .|++.+.+.++.+|.+.+
T Consensus       129 PFGSPa-------------PFlDaA~~s~~~~G~l~v  152 (380)
T COG1867         129 PFGSPA-------------PFLDAALRSVRRGGLLCV  152 (380)
T ss_pred             CCCCCc-------------hHHHHHHHHhhcCCEEEE
Confidence             22232             788999999999999998

>PRK10742 putative methyltransferase; Provisional

Probab=97.30  E-value=0.0021  Score=57.35  Aligned_cols=79  Identities=20%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh------CC---CcEEEEecchhHHHHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS------GI---TNGYFIATNATSTFRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~------~~---~nv~~~~~d~~~~~d~ivsnpp  217 (336)
                      .++|||+-+|+|..++.+|.+  +++|+++|.++.+....+.++++.      +.   .+++++++|..+.+..    .+
T Consensus        89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~----~~  162 (250)
T PRK10742         89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT  162 (250)
T ss_pred             CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh----CC
Confidence            468999999999999999988  788999999999999999998874      22   5799999999887543    12


Q ss_pred             CeEEEEEeeCCCCC
Q 019743          218 GKLILVSIQCPNPD  231 (336)
Q Consensus       218 ~~~d~i~~~~~dp~  231 (336)
                      ..+|.|++.-+-|+
T Consensus       163 ~~fDVVYlDPMfp~  176 (250)
T PRK10742        163 PRPQVVYLDPMFPH  176 (250)
T ss_pred             CCCcEEEECCCCCC
Confidence            35787776533333

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.29  E-value=0.0014  Score=62.50  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ..++||-=+|||.=++.++++.+ ...|++-|+|+++++..++|++.|+++.  +++.+.|+...+-    .....+|.|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I  125 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI  125 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence            35899999999999999999954 4689999999999999999999999875  8888999977542    124456766


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE-EeCc
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QSDI  266 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~-~~~~  266 (336)
                      .+.   |+-         ---.|++.+.+.++.||.+++ .||.
T Consensus       126 DlD---PfG---------Sp~pfldsA~~~v~~gGll~vTaTD~  157 (377)
T PF02005_consen  126 DLD---PFG---------SPAPFLDSALQAVKDGGLLCVTATDT  157 (377)
T ss_dssp             EE-----SS-----------HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred             EeC---CCC---------CccHhHHHHHHHhhcCCEEEEecccc
Confidence            553   321         012899999999999999999 3443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.22  E-value=0.0029  Score=58.50  Aligned_cols=61  Identities=11%  Similarity=0.137  Sum_probs=53.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +..++|.=||.|..+..+++..|+.+++|+|.++.+++.|+++....+ .++++++++..+.
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l   81 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF   81 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH
Confidence            568999999999999999998877999999999999999999886543 5799999987664

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.20  E-value=0.00083  Score=57.28  Aligned_cols=57  Identities=21%  Similarity=0.345  Sum_probs=49.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA  205 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~  205 (336)
                      +.+|||+|+|||..++..|+.. ...|++.|+.+...+.++.|++.|+. ++.+.+.|.
T Consensus        80 gkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~  136 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADL  136 (218)
T ss_pred             cceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccc
Confidence            5689999999999999998875 56799999999999999999998884 588888765

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.10  E-value=0.00052  Score=66.45  Aligned_cols=119  Identities=16%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEE---ecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGL---EVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~gi---Dis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ..+||+|||+|.++..|..+  +.....+   |..+..++.|.++    |+.-+   .+-+..   .-+..|..+||.++
T Consensus       119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR----Gvpa~---~~~~~s---~rLPfp~~~fDmvH  186 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER----GVPAM---IGVLGS---QRLPFPSNAFDMVH  186 (506)
T ss_pred             EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc----Ccchh---hhhhcc---ccccCCccchhhhh
Confidence            46899999999999999877  3333332   3444556665432    43311   111100   11233677788765


Q ss_pred             ee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc---------HHHHHHHHHHHHHcCCccee
Q 019743          225 IQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       225 ~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~l~~~g~~~~~  286 (336)
                      .. ...||....        ..++-++-|+|+|||++++....         ......+.++.+..-|+.+.
T Consensus       187 csrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va  250 (506)
T PF03141_consen  187 CSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA  250 (506)
T ss_pred             cccccccchhcc--------cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence            43 334552211        24677899999999999984321         12233455555555565543

; GO: 0008168 methyltransferase activity

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.10  E-value=0.013  Score=47.81  Aligned_cols=108  Identities=11%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             eEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeCC-CCCCCcchhhhhcchHHHHHH
Q 019743          172 NFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCP-NPDFNRPEHRWRMVQRSLVEA  249 (336)
Q Consensus       172 ~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~-dp~~~~~~~~~~l~~~~~l~~  249 (336)
                      +|+|+||-+.|++.+++++++.++. ++++++.+=.. ++..+  |+..++.+..+.- -|--.+.-.......-..++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i--~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~   77 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYI--PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA   77 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhC--ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence            5899999999999999999998875 59888866444 45555  2335666655421 121000001112223477889


Q ss_pred             HHhcCcCCcEEEEEe--CcH---HHHHHHHHHHHHcCC
Q 019743          250 VSDLLVHDGKVFLQS--DIE---EVMLRMKQQFLEYGK  282 (336)
Q Consensus       250 ~~~~LkpgG~l~~~~--~~~---~~~~~~~~~l~~~g~  282 (336)
                      +.+.|+|||.+.+..  +..   .-.+.+.+.+....-
T Consensus        78 al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~  115 (140)
T PF06962_consen   78 ALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQ  115 (140)
T ss_dssp             HHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-T
T ss_pred             HHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCc
Confidence            999999999999844  222   223455566655543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.04  E-value=0.0015  Score=58.92  Aligned_cols=128  Identities=14%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             CeEEEEeccc--cHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCC--eEE-
Q 019743          148 PLVVDIGSGN--GLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG--KLI-  221 (336)
Q Consensus       148 ~~vLDiGcGs--G~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~--~~d-  221 (336)
                      ..+||||||-  -...-.+|++ .|+++|+-+|++|-.+..++.-+..+......++++|+.+. +.|+.+|.-  .+| 
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP-EAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H-HHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH-HHHhcCHHHHhcCCC
Confidence            4699999993  2344556665 79999999999999999998876544322389999999763 223322111  011 


Q ss_pred             ----EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcC
Q 019743          222 ----LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYG  281 (336)
Q Consensus       222 ----~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g  281 (336)
                          .+.+...-++..     ....-..+++.+.+.|.||.++.+.+...    ...+.+.+.+.+.+
T Consensus       149 ~rPVavll~~vLh~v~-----D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~  211 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVP-----DDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG  211 (267)
T ss_dssp             TS--EEEECT-GGGS------CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred             CCCeeeeeeeeeccCC-----CccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence                111110000000     00123589999999999999999955322    22344555555544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.03  E-value=0.0017  Score=56.78  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+.++|||||-|.+...|..+. --+++-+|-|..|++.++.-- ..++. +..+.+|-+. +|  |  ...++|.+...
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-dp~i~-~~~~v~DEE~-Ld--f--~ens~DLiisS  144 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-DPSIE-TSYFVGDEEF-LD--F--KENSVDLIISS  144 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-CCceE-EEEEecchhc-cc--c--cccchhhhhhh
Confidence            4679999999999999998775 457899999999999886421 12222 3444555332 22  1  23344433322


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..-.|..        ..+..+.++...|||+|.|+-
T Consensus       145 lslHW~N--------dLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  145 LSLHWTN--------DLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             hhhhhhc--------cCchHHHHHHHhcCCCccchh
Confidence            2222311        124777888899999998765

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.83  E-value=0.011  Score=52.09  Aligned_cols=150  Identities=17%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhh-cCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIV-ASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~iv-snpp~~~d~i  223 (336)
                      ++.++||||+.||.|+..+.++. ..+|+|+|..-..+..--++     -.++ .+...|+....+..+ ..|+..+.  
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~--  150 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFTEKPDLIVI--  150 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcccCCCeEEE--
Confidence            46789999999999999888774 57899999998776653221     1233 334455543322222 11111111  


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCC
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  303 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~  303 (336)
                      .+.|             .-...++..+...|+|+|.+.+-.  .+|++.-++.....|.     .+|..           
T Consensus       151 DvSF-------------ISL~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~kkGv-----v~d~~-----------  199 (245)
T COG1189         151 DVSF-------------ISLKLILPALLLLLKDGGDLVLLV--KPQFEAGREQVGKKGV-----VRDPK-----------  199 (245)
T ss_pred             Eeeh-------------hhHHHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcCcCce-----ecCcc-----------
Confidence            1111             113478889999999999888755  3567776666543332     22211           


Q ss_pred             CCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 019743          304 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV  335 (336)
Q Consensus       304 ~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~~  335 (336)
                       .......+.+....+.|+.+..+.+.++.+.
T Consensus       200 -~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~  230 (245)
T COG1189         200 -LHAEVLSKIENFAKELGFQVKGLIKSPIKGG  230 (245)
T ss_pred             -hHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence             1113445667777777888887777776553

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.81  E-value=0.0019  Score=55.50  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      ...++||+|.|.|.++..++..+  .+|++.|.|..|..+.++
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK  152 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh
Confidence            45789999999999999998775  359999999999887654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.0011  Score=54.77  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=77.6

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh---CCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~---~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||+|-| +|-.++.+|...|...|...|-++++++..++-...+   +.+.+..+.-++...-.   +-....||.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs---q~eq~tFDi  106 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS---QQEQHTFDI  106 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH---HHhhCcccE
Confidence            4679999999 6777788899999999999999999998887665444   23444444433322100   001122343


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-HHHHHHHHHHHHcCCcc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-EVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~l~~~g~~~  284 (336)
                      |..  .|-.+-.      .....+++.+..+|+|.|...+.+.-+ +..+.+.......||..
T Consensus       107 Ila--ADClFfd------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v  161 (201)
T KOG3201|consen  107 ILA--ADCLFFD------EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV  161 (201)
T ss_pred             EEe--ccchhHH------HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence            221  1111101      123588999999999999977755432 22334555556667764

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.70  E-value=0.013  Score=53.38  Aligned_cols=106  Identities=13%  Similarity=0.122  Sum_probs=61.9

Q ss_pred             CeEEEEecccc-HHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHH-HhCC-CcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          148 PLVVDIGSGNG-LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQ-LSGI-TNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       148 ~~vLDiGcGsG-~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~-~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+|+=||||.= ..++.++++ .++..|+++|+++++++.|++-++ ..++ .++.|+.+|..+.-..     -..+|.+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-----l~~~DvV  196 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-----LKEYDVV  196 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------SEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-----cccCCEE
Confidence            48999999954 445667765 468899999999999999998776 3344 4699999998653111     1124555


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ++.-.-..       .+.--.+++..+.+.++||..+.+.+.
T Consensus       197 ~lAalVg~-------~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  197 FLAALVGM-------DAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             EE-TT-S-----------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             EEhhhccc-------ccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            54321110       001124899999999999999999764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.011  Score=48.09  Aligned_cols=91  Identities=21%  Similarity=0.252  Sum_probs=68.9

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      -|.|.++++.+++-...             ++....+|||+|.|.+.++.|+.. -..-+|+|+++-.+..++-.+-+++
T Consensus        54 VpAtteQv~nVLSll~~-------------n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g  119 (199)
T KOG4058|consen   54 VPATTEQVENVLSLLRG-------------NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG  119 (199)
T ss_pred             cCccHHHHHHHHHHccC-------------CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh
Confidence            37788888888775442             235789999999999999998875 4567899999999999999988888


Q ss_pred             CC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          195 IT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       195 ~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +. ..+|..-|+... |+    -||....++
T Consensus       120 ~~k~trf~RkdlwK~-dl----~dy~~vviF  145 (199)
T KOG4058|consen  120 CAKSTRFRRKDLWKV-DL----RDYRNVVIF  145 (199)
T ss_pred             cccchhhhhhhhhhc-cc----cccceEEEe
Confidence            64 578888887653 32    466544433

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.49  E-value=0.0049  Score=53.94  Aligned_cols=55  Identities=15%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-CCCc-EEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GITN-GYF  200 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~~~n-v~~  200 (336)
                      ++.++||||+|.-||=-.+..+.-+.+++|.||++-+++.|+.++..| ++++ +++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l  134 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL  134 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence            367899999999998655554433789999999999999999999877 4543 444

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.47  E-value=0.008  Score=55.59  Aligned_cols=77  Identities=14%  Similarity=0.084  Sum_probs=55.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC-CCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn-pp~~~d~i~  224 (336)
                      +..++|.=.|.|.++.++.+..|+++++|+|.++.+++.|++++... -+++.+++++..+..+.+-.+ ....+|.+.
T Consensus        21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL   98 (310)
T ss_dssp             T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred             CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence            56899988999999999999998999999999999999998876543 357999999877654444443 344567664

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.31  E-value=0.036  Score=51.81  Aligned_cols=86  Identities=12%  Similarity=0.102  Sum_probs=57.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.++|||||++|.++..++++  +.+|+|||..+-.     .++  ....+|..++.|.+....     ++..+|.++.
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L--~~~~~V~h~~~d~fr~~p-----~~~~vDwvVc  276 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSL--MDTGQVEHLRADGFKFRP-----PRKNVDWLVC  276 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----Hhh--hCCCCEEEEeccCcccCC-----CCCCCCEEEE
Confidence            3679999999999999999988  6799999965421     111  234579999988765411     1344566555


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD  257 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg  257 (336)
                      .+.+..            .+..+.+.++|..|
T Consensus       277 Dmve~P------------~rva~lm~~Wl~~g  296 (357)
T PRK11760        277 DMVEKP------------ARVAELMAQWLVNG  296 (357)
T ss_pred             ecccCH------------HHHHHHHHHHHhcC
Confidence            443221            25666677777655

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.18  E-value=0.0078  Score=52.20  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=36.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~  190 (336)
                      .-.+.|=|||+|.+...+...+++  .+++|.||++++++.|++|+
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL   97 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL   97 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence            457899999999999888877644  57999999999999999987

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=96.17  E-value=0.007  Score=55.34  Aligned_cols=69  Identities=12%  Similarity=0.230  Sum_probs=53.3

Q ss_pred             EEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-------------HHHhhhcC
Q 019743          150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-------------TFRSIVAS  215 (336)
Q Consensus       150 vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-------------~~d~ivsn  215 (336)
                      =+|||+|.-|+=-.+..+.-+..++++|++...+..|+.|+.+++++ .+.+++.+...             .||...+|
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            48999999988766655555789999999999999999999998875 45555543211             37778888


Q ss_pred             CCC
Q 019743          216 YPG  218 (336)
Q Consensus       216 pp~  218 (336)
                      ||+
T Consensus       186 PPF  188 (419)
T KOG2912|consen  186 PPF  188 (419)
T ss_pred             Cch
Confidence            886

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.16  E-value=0.0084  Score=52.06  Aligned_cols=121  Identities=17%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh---C-CCCeEEEEecChHHHHHHHHHH
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK---R-KDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~---~-p~~~v~giDis~~~l~~a~~n~  190 (336)
                      .|...-.|.+.+-+.+                ...|+|+|.-.|..++..|..   . ++.+|+|+||+.......... 
T Consensus        17 ~P~Dm~~~qeli~~~k----------------Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e-   79 (206)
T PF04989_consen   17 YPQDMVAYQELIWELK----------------PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE-   79 (206)
T ss_dssp             -HHHHHHHHHHHHHH------------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG-
T ss_pred             CHHHHHHHHHHHHHhC----------------CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh-
Confidence            3666667777766544                568999999999888877653   3 789999999965544332221 


Q ss_pred             HHhCC-CcEEEEecchhHH--HHhhh--cCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          191 QLSGI-TNGYFIATNATST--FRSIV--ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       191 ~~~~~-~nv~~~~~d~~~~--~d~iv--snpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                       .+.+ ++++++++|..+.  ++.+-  ..++. ...+ +.  |..     |... ..-+-++.....+++|++++++
T Consensus        80 -~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~-~vlV-il--Ds~-----H~~~-hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen   80 -SHPMSPRITFIQGDSIDPEIVDQVRELASPPH-PVLV-IL--DSS-----HTHE-HVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             -G----TTEEEEES-SSSTHHHHTSGSS----S-SEEE-EE--SS---------S-SHHHHHHHHHHT--TT-EEEET
T ss_pred             -hccccCceEEEECCCCCHHHHHHHHHhhccCC-ceEE-EE--CCC-----ccHH-HHHHHHHHhCccCCCCCEEEEE
Confidence             1222 5799999998642  22211  11111 1111 11  221     1111 1125566688999999999883

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.16  E-value=0.043  Score=50.23  Aligned_cols=127  Identities=15%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||+|||.|.-+.+....++ -.+++++|.|+.|++.++.-++............+..   ....+.++.  |.+..
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~--DLvi~  108 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY---RDFLPFPPD--DLVIA  108 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh---cccccCCCC--cEEEE
Confidence            46899999999987777766665 3579999999999999887654321111000011111   000111222  44433


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHH---HHHHHHHHcCCcce
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML---RMKQQFLEYGKGKL  285 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~l~~~g~~~~  285 (336)
                      .+.--....   .   ....+++.+.+.+.+ =.+++|.+...-++   .+++.+.+.++...
T Consensus       109 s~~L~EL~~---~---~r~~lv~~LW~~~~~-~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~  164 (274)
T PF09243_consen  109 SYVLNELPS---A---ARAELVRSLWNKTAP-VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV  164 (274)
T ss_pred             ehhhhcCCc---h---HHHHHHHHHHHhccC-cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence            321111111   1   124778888777766 34444655443333   55666766666543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.14  E-value=0.066  Score=55.26  Aligned_cols=126  Identities=13%  Similarity=0.060  Sum_probs=78.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------C-----CCeEEEEecCh---HHHHHHHHH-----------HHH-----hCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEVNG---KLVTHCRDS-----------LQL-----SGI  195 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-------p-----~~~v~giDis~---~~l~~a~~n-----------~~~-----~~~  195 (336)
                      .-+|+|+|.|+|...+...+.+       |     ..+++++|..|   +.+..+.+.           ...     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            4689999999998666655433       3     46899999654   333333221           111     121


Q ss_pred             -------C--cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          196 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       196 -------~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                             .  +++++.+|+.+.+..+    +..+|.+++.   +......  ..+-...+++.+.+.++|||++.--+  
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD---~FsP~~n--p~~W~~~~~~~l~~~~~~~~~~~t~t--  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLD---GFAPAKN--PDMWSPNLFNALARLARPGATLATFT--  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeC---CCCCccC--hhhccHHHHHHHHHHhCCCCEEEEee--
Confidence                   1  3556778887754332    2346666543   2111111  12456799999999999999988543  


Q ss_pred             HHHHHHHHHHHHHcCCcce
Q 019743          267 EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       267 ~~~~~~~~~~l~~~g~~~~  285 (336)
                        .+..+++-|.+.||...
T Consensus       207 --~a~~vr~~l~~~GF~v~  223 (662)
T PRK01747        207 --SAGFVRRGLQEAGFTVR  223 (662)
T ss_pred             --hHHHHHHHHHHcCCeee
Confidence              36678899999999753

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.10  E-value=0.079  Score=45.11  Aligned_cols=107  Identities=18%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHH--HHhhh-cCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATST--FRSIV-ASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~--~d~iv-snpp~~~d  221 (336)
                      +.+|||+||..|.++.-.-++ .|+.-++|||+-.-           .....+.++++ |+.+.  ...|+ +.|...+|
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd  138 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVD  138 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence            679999999999999887777 49999999998431           12344666666 55331  11111 22445566


Q ss_pred             EEEeeC-CCCC-CCcchhhhh-cchHHHHHHHHhcCcCCcEEEEEe
Q 019743          222 LVSIQC-PNPD-FNRPEHRWR-MVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       222 ~i~~~~-~dp~-~~~~~~~~~-l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .+...+ |++. .....|.+. ..-...+.-+...++|+|.+++..
T Consensus       139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~  184 (232)
T KOG4589|consen  139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL  184 (232)
T ss_pred             EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence            655443 3322 111222211 111334455567889999999965

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.99  E-value=0.03  Score=49.95  Aligned_cols=59  Identities=17%  Similarity=0.247  Sum_probs=45.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT  206 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~  206 (336)
                      ..+|+|||||-=-+++......|+..++|+||+..+++...+-....+. +......|..
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~  164 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLL  164 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TT
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeee
Confidence            5689999999999999888788889999999999999999988887774 3555555643

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.94  E-value=0.004  Score=57.49  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHH-------HHHHHHHHhCCCc--EEEEecchhH-------HH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVT-------HCRDSLQLSGITN--GYFIATNATS-------TF  209 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~-------~a~~n~~~~~~~n--v~~~~~d~~~-------~~  209 (336)
                      ++..|.|==.|||.+.++.|.-  ++.|+|.||+-.++.       ..+.|.++.|...  +.++.+|...       .|
T Consensus       208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            3678999999999999988866  789999999998887       3466777777432  5566777643       48


Q ss_pred             HhhhcCCCCeEEEE---E-----eeC------CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          210 RSIVASYPGKLILV---S-----IQC------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       210 d~ivsnpp~~~d~i---~-----~~~------~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      |.|++.|||-+..-   .     ...      .+..+...+.........++.-.++.|..||++.+-
T Consensus       286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w  353 (421)
T KOG2671|consen  286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW  353 (421)
T ss_pred             eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence            99999999864321   0     000      011111111122234568889999999999999983

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.85  E-value=0.0069  Score=46.66  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecCh
Q 019743          138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG  180 (336)
Q Consensus       138 ~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~  180 (336)
                      |...+...+.+..+|||||+|.+.--|.++  +....|+|...
T Consensus        50 W~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~   90 (112)
T PF07757_consen   50 WRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR   90 (112)
T ss_pred             HhcccCCCCCCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence            443333334567999999999998888877  67788999653

; GO: 0008168 methyltransferase activity

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.70  E-value=0.017  Score=54.84  Aligned_cols=97  Identities=16%  Similarity=0.163  Sum_probs=67.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ...++|+|||.|.....++.- ..+.++|+|.++..+..+........+.| ..++.+|..+.   ++  ++..+|.+..
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~---~f--edn~fd~v~~  184 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM---PF--EDNTFDGVRF  184 (364)
T ss_pred             cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC---CC--CccccCcEEE
Confidence            347899999999998888754 47899999999999888887777666654 23344444332   12  2334443332


Q ss_pred             e-----CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 Q-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~-----~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .     .|++             ...+++++++++|||.+..
T Consensus       185 ld~~~~~~~~-------------~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  185 LEVVCHAPDL-------------EKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             EeecccCCcH-------------HHHHHHHhcccCCCceEEe
Confidence            1     2222             3888999999999999988

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.65  E-value=0.056  Score=48.74  Aligned_cols=120  Identities=10%  Similarity=0.094  Sum_probs=80.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--------HHHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--------TFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--------~~d~ivsnpp~  218 (336)
                      +..|+=+| ---..++++|...--.++..+||++..+....+-+++.|..|+..+..|+.+        .||.++..||+
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe  231 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE  231 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh
Confidence            45688888 5555667776654456899999999999999999999999999988888765        24544444444


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC---cEEEEEeC--cHHHHHHHHH-HHHHcCCcceee
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQSD--IEEVMLRMKQ-QFLEYGKGKLVL  287 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg---G~l~~~~~--~~~~~~~~~~-~l~~~g~~~~~~  287 (336)
                      .+.                    -.+.|+..-...||.-   |++.+..-  ..+-..++++ +..+.|+.....
T Consensus       232 Ti~--------------------alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi  286 (354)
T COG1568         232 TIK--------------------ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI  286 (354)
T ss_pred             hHH--------------------HHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence            321                    1245666666678866   88888432  2233456777 555667654433

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=95.64  E-value=0.057  Score=45.55  Aligned_cols=134  Identities=16%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             EeccccHHHHHHHHhCC-CCeEEEEecC--hHHHHH---HHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEEEe
Q 019743          153 IGSGNGLFLLGMARKRK-DLNFLGLEVN--GKLVTH---CRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       153 iGcGsG~~~~~la~~~p-~~~v~giDis--~~~l~~---a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +|=|.=.++.+||+.+. ..++++.-.+  ++..+.   +..|++.....++.++ -.|+... ..........+|.|..
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence            45555567777888866 6667666544  333322   3356655433344443 3455443 2212113455899999


Q ss_pred             eCCCCCCCcch-----hhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHH-HHHHHHHHcCCcceee
Q 019743          226 QCPNPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVML-RMKQQFLEYGKGKLVL  287 (336)
Q Consensus       226 ~~~dp~~~~~~-----~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~-~~~~~l~~~g~~~~~~  287 (336)
                      +||-.-....+     ...+.+...|++.+.++|+++|.+++.... .+|.. .+.++....|+.....
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~  150 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK  150 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence            98765311111     123455689999999999999999995422 22222 3456666778876543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.63  E-value=0.34  Score=44.10  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=35.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR  187 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~  187 (336)
                      +..+||==|||-|.++..+|++  +..+.|.|.|--|+-..+
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHH
Confidence            3578999999999999999998  789999999999875543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.44  E-value=0.0083  Score=54.22  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=62.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +..++|+|||.|..+..    +|.+.++|.|++...+..|++.    +.  .....+|+...     .-+++++|.....
T Consensus        46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~-----p~~~~s~d~~lsi  110 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKL-----PFREESFDAALSI  110 (293)
T ss_pred             cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----CC--ceeehhhhhcC-----CCCCCccccchhh
Confidence            56899999999976542    4888999999999988877531    21  15667777653     1134445532111


Q ss_pred             CCCCCCCcchhh-hhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                            ...||- .+.-....+++..+.|+|||...+
T Consensus       111 ------avihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  111 ------AVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             ------hhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence                  011221 122345899999999999998776

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.38  E-value=0.048  Score=49.18  Aligned_cols=135  Identities=17%  Similarity=0.076  Sum_probs=72.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc----------------------------E
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN----------------------------G  198 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n----------------------------v  198 (336)
                      +.++||||||.-.+-..-|..+ -.+++..|.++.-++..++.++..+.-+                            |
T Consensus        57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            4689999999966543333332 3469999999999988877764332100                            1


Q ss_pred             -EEEecchhHH--HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------Cc
Q 019743          199 -YFIATNATST--FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DI  266 (336)
Q Consensus       199 -~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~  266 (336)
                       .++.+|..+.  ++..+.- |..+|.+...|.-.    .-...+..|++.++++.++|||||.|++..         +.
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~-p~~~D~v~s~fcLE----~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~  210 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVL-PPKFDCVISSFCLE----SACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG  210 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS--SSEEEEEEESSHH----HH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT
T ss_pred             ceEEEeeccCCCCCCccccC-ccchhhhhhhHHHH----HHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC
Confidence             1222333220  0000000 11244443332110    001122347899999999999999999822         10


Q ss_pred             ------HHHHHHHHHHHHHcCCcceee
Q 019743          267 ------EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       267 ------~~~~~~~~~~l~~~g~~~~~~  287 (336)
                            .--.+.+.+.+++.||.....
T Consensus       211 ~~F~~l~l~ee~v~~al~~aG~~i~~~  237 (256)
T PF01234_consen  211 HKFPCLPLNEEFVREALEEAGFDIEDL  237 (256)
T ss_dssp             EEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred             EecccccCCHHHHHHHHHHcCCEEEec
Confidence                  012557888899999976543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.33  E-value=0.16  Score=46.33  Aligned_cols=120  Identities=18%  Similarity=0.221  Sum_probs=88.9

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CC--CcEEEEecchhHHHHhhhcCCCCeE
Q 019743          145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       145 ~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~--~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      ++..++|=||=|-|......++.-.--+++-+||+...++..++-....  |.  +.|.++-+|...++...   +...+
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~~  196 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENPF  196 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCCc
Confidence            3456899999999999888877733457889999999999888776543  22  46999999988765543   23445


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHH
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML  271 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  271 (336)
                      |.+.....||.-    +...++.+.+++.+.+.||++|.+....+..++..
T Consensus       197 dVii~dssdpvg----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~  243 (337)
T KOG1562|consen  197 DVIITDSSDPVG----PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL  243 (337)
T ss_pred             eEEEEecCCccc----hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence            777777777742    33456788999999999999999999666544433

>PRK11524 putative methyltransferase; Provisional

Probab=95.19  E-value=0.071  Score=49.02  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      ++..|||--||||..+++..+.  +-+++|+|++++.++.|++++.
T Consensus       208 ~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        208 PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence            4789999999999998887766  6789999999999999999875

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.08  E-value=0.041  Score=52.54  Aligned_cols=54  Identities=26%  Similarity=0.375  Sum_probs=44.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFI  201 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~  201 (336)
                      ...+||||+|||.++...++.. .-.++++|.-..|.+.|++-..++|.+ ++.++
T Consensus        67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI  121 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVI  121 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeee
Confidence            3569999999999999888887 445999999999999999998888864 45543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.07  E-value=0.066  Score=46.80  Aligned_cols=58  Identities=17%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      .+.-.++++..++...              .++..|||-=||||..+++..+.  +.+++|+|+++..++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t--------------~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKAST--------------NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS---------------TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhh--------------ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            5667778888886543              14689999999999998887776  6789999999999999864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.04  E-value=0.16  Score=45.03  Aligned_cols=101  Identities=15%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~i  223 (336)
                      ..+||=||++||......+.- .|+.-|+++|.|+..=......++  ..+|+.-+..|+..  .+...+   + .+|.|
T Consensus       157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtNiiPIiEDArhP~KYRmlV---g-mVDvI  230 (317)
T KOG1596|consen  157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTNIIPIIEDARHPAKYRMLV---G-MVDVI  230 (317)
T ss_pred             CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCCceeeeccCCCchheeeee---e-eEEEE
Confidence            678999999999988887766 589999999999765443332222  24788888888854  233333   1 45555


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +...+.|.          ..+-+.-++...||+||.+.+.
T Consensus       231 FaDvaqpd----------q~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  231 FADVAQPD----------QARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eccCCCch----------hhhhhhhhhhhhhccCCeEEEE
Confidence            54433332          1234555778899999999883

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.03  E-value=0.22  Score=42.72  Aligned_cols=138  Identities=13%  Similarity=0.015  Sum_probs=74.6

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChH----HHHHHHHHH--HHhCCCcEEEEecchhH
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGK----LVTHCRDSL--QLSGITNGYFIATNATS  207 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~----~l~~a~~n~--~~~~~~nv~~~~~d~~~  207 (336)
                      ++.+.|..   .+..|+|+=.|+|.++.-++.. .|...|++.=-.+.    .....+.+.  ++....|++.+-.+...
T Consensus        40 ~L~FaGlk---pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A  116 (238)
T COG4798          40 VLAFAGLK---PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA  116 (238)
T ss_pred             eeEEeccC---CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc
Confidence            55666654   3679999999999999999887 47778887643322    111111111  11223444444333322


Q ss_pred             HHHhhhcCCCCeEEEEEee--CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH--------------HHH
Q 019743          208 TFRSIVASYPGKLILVSIQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VML  271 (336)
Q Consensus       208 ~~d~ivsnpp~~~d~i~~~--~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~  271 (336)
                      .    .  ||..++.+...  +-+-+.+.-|.   -...++..++++.|||||.+.++.....              -..
T Consensus       117 ~----~--~pq~~d~~~~~~~yhdmh~k~i~~---~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a  187 (238)
T COG4798         117 L----G--APQKLDLVPTAQNYHDMHNKNIHP---ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPA  187 (238)
T ss_pred             c----C--CCCcccccccchhhhhhhccccCc---chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChH
Confidence            1    1  33334433221  11111111111   2346788899999999999988431100              122


Q ss_pred             HHHHHHHHcCCcc
Q 019743          272 RMKQQFLEYGKGK  284 (336)
Q Consensus       272 ~~~~~l~~~g~~~  284 (336)
                      .+.+..++.||..
T Consensus       188 ~V~a~veaaGFkl  200 (238)
T COG4798         188 VVIAEVEAAGFKL  200 (238)
T ss_pred             HHHHHHHhhccee
Confidence            4566667788864

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.64  E-value=0.14  Score=49.78  Aligned_cols=130  Identities=6%  Similarity=0.039  Sum_probs=81.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCC-eEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPG-KLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~-~~d~i~  224 (336)
                      ...+|=+|-|+|.+...+-...|...++++++.|.|++.|..+.....-.+.++.-.|....+.... +++.. .+|.+.
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~  375 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM  375 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence            4578899999999999988889999999999999999999998754332233344445444322222 22322 245443


Q ss_pred             e--eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE--EeCcHHHHHHHHHHH
Q 019743          225 I--QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL--QSDIEEVMLRMKQQF  277 (336)
Q Consensus       225 ~--~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~~~l  277 (336)
                      +  ..+|++ ...-+....+...++..+...|.|.|.+.+  .+.+..+...+..-|
T Consensus       376 ~dvds~d~~-g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l  431 (482)
T KOG2352|consen  376 VDVDSKDSH-GMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL  431 (482)
T ss_pred             EECCCCCcc-cCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence            3  333321 111122234567899999999999999988  333334444444433

>PRK13699 putative methylase; Provisional

Probab=94.55  E-value=0.16  Score=45.07  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=40.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  193 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~  193 (336)
                      ++..|||-=||||..+++..+.  +.+++|+|+++...+.|.++++..
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            3678999999999998887766  678999999999999999887653

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.55  E-value=0.057  Score=52.43  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=78.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCC--CeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYP--GKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp--~~~d~  222 (336)
                      ..+|||.=|+||.-++..|++.|+. .+++-|.++.+++..++|++.++.++ +...+.|+...   .+.++.  ..||.
T Consensus       110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~l---M~~~~~~~~~FDv  186 (525)
T KOG1253|consen  110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVL---MYEHPMVAKFFDV  186 (525)
T ss_pred             cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHH---HHhccccccccce
Confidence            5689999999999999999998875 69999999999999999999887665 66777887653   233332  34565


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      |.+   ||+-         .-..|++.+.+.+..||.+.+
T Consensus       187 IDL---DPyG---------s~s~FLDsAvqav~~gGLL~v  214 (525)
T KOG1253|consen  187 IDL---DPYG---------SPSPFLDSAVQAVRDGGLLCV  214 (525)
T ss_pred             Eec---CCCC---------CccHHHHHHHHHhhcCCEEEE
Confidence            544   3431         113899999999999999999

>PRK11524 putative methyltransferase; Provisional

Probab=94.44  E-value=0.1  Score=48.04  Aligned_cols=82  Identities=12%  Similarity=0.001  Sum_probs=46.0

Q ss_pred             cEEEEecchhHH--------HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          197 NGYFIATNATST--------FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       197 nv~~~~~d~~~~--------~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      +-+++++|..+.        +|+++++|||-...-+....+.+.   ..........++.++.++|||||.+++.++...
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~   84 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN   84 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh
Confidence            346777887652        677777788743110101111110   001112246899999999999999999776543


Q ss_pred             HHHHHHHHHHHcCCc
Q 019743          269 VMLRMKQQFLEYGKG  283 (336)
Q Consensus       269 ~~~~~~~~l~~~g~~  283 (336)
                       ... ...+...+|.
T Consensus        85 -~~~-~~~~~~~~f~   97 (284)
T PRK11524         85 -MPF-IDLYCRKLFT   97 (284)
T ss_pred             -hhH-HHHHHhcCcc
Confidence             223 3334455654

>PHA01634 hypothetical protein

Probab=94.17  E-value=0.13  Score=41.08  Aligned_cols=49  Identities=16%  Similarity=0.070  Sum_probs=42.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI  195 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~  195 (336)
                      .+.+|+|||.+-|..++..+.+. ...|+++|.++...+..++|++.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhhee
Confidence            35789999999999999998775 56799999999999999999876643

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.01  E-value=0.56  Score=42.91  Aligned_cols=127  Identities=13%  Similarity=0.092  Sum_probs=72.3

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  228 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~  228 (336)
                      +++|+.||.|.+...+.+.. -..+.++|+++.+++..+.|...     . ++++|+.+.-..-+   ...+|.++..+|
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~---~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDF---IPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhc---CCCCCEEEeCCC
Confidence            58999999999988887764 33578999999999998877531     1 45566654311000   123565555443


Q ss_pred             CCCCCcchh------hhhcchHHHHHHHHhcCcCCcEEEEEe-------CcHHHHHHHHHHHHHcCCcceee
Q 019743          229 NPDFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       229 dp~~~~~~~------~~~l~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      -..+.....      .+......+++.+. .++|. .+++|.       +.......+.+.|++.||.....
T Consensus        72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~-~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~  141 (275)
T cd00315          72 CQPFSIAGKRKGFEDTRGTLFFEIIRILK-EKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK  141 (275)
T ss_pred             ChhhhHHhhcCCCCCchHHHHHHHHHHHH-hcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence            322221111      11112234444433 44665 455533       11234667888888889876443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.89  E-value=0.16  Score=50.63  Aligned_cols=115  Identities=19%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             CeEEEEeccccHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhH--------HHHhhh
Q 019743          148 PLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATS--------TFRSIV  213 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~----p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~--------~~d~iv  213 (336)
                      ..+.|..||||.+.+...+..    ....++|-+..+.+...|..|...++..  .....++|.+.        .||.++
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~  298 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV  298 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence            479999999999988755432    2356999999999999999997666542  23333333321        378889


Q ss_pred             cCCCCeEEEEEeeC----CCCCCCcch--hhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          214 ASYPGKLILVSIQC----PNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       214 snpp~~~d~i~~~~----~dp~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +|||+....-.-..    .+++....|  +...-.-..++..+...|++||+..+
T Consensus       299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai  353 (501)
T TIGR00497       299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI  353 (501)
T ss_pred             ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence            99998632100000    011100001  00001135788888999999998665

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.82  E-value=0.38  Score=43.25  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             CCeEEEEeccccHHHHHHHH---h--CCCCeEEEEecC--------------------------hHHHHHHHHHHHHhCC
Q 019743          147 QPLVVDIGSGNGLFLLGMAR---K--RKDLNFLGLEVN--------------------------GKLVTHCRDSLQLSGI  195 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~---~--~p~~~v~giDis--------------------------~~~l~~a~~n~~~~~~  195 (336)
                      ...|+|.||=.|..++.++.   .  .++.++++.|-=                          ...++..++|+.+.++
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            45799999988876665433   2  256779998821                          1134445555555554


Q ss_pred             --CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc--HHHHH
Q 019743          196 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVML  271 (336)
Q Consensus       196 --~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~  271 (336)
                        .+++++.+...+.+.   .+|+..+..+.+.. |-+         .-....++.++..|.|||.+++ .|+  .....
T Consensus       155 ~~~~v~~vkG~F~dTLp---~~p~~~IAll~lD~-DlY---------esT~~aLe~lyprl~~GGiIi~-DDY~~~gcr~  220 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLP---DAPIERIALLHLDC-DLY---------ESTKDALEFLYPRLSPGGIIIF-DDYGHPGCRK  220 (248)
T ss_dssp             SSTTEEEEES-HHHHCC---C-TT--EEEEEE----SH---------HHHHHHHHHHGGGEEEEEEEEE-SSTTTHHHHH
T ss_pred             CcccEEEECCcchhhhc---cCCCccEEEEEEec-cch---------HHHHHHHHHHHhhcCCCeEEEE-eCCCChHHHH
Confidence              579999998876533   23444444444431 110         0124788899999999999998 332  22344


Q ss_pred             HHHHHHHHcCCcce
Q 019743          272 RMKQQFLEYGKGKL  285 (336)
Q Consensus       272 ~~~~~l~~~g~~~~  285 (336)
                      .+.+.+.++|....
T Consensus       221 AvdeF~~~~gi~~~  234 (248)
T PF05711_consen  221 AVDEFRAEHGITDP  234 (248)
T ss_dssp             HHHHHHHHTT--S-
T ss_pred             HHHHHHHHcCCCCc
Confidence            56667777776544

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=93.54  E-value=0.92  Score=40.71  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-----CC-cEEEEecchhHH--HHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----IT-NGYFIATNATST--FRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-----~~-nv~~~~~d~~~~--~d~ivsnpp~  218 (336)
                      ...|||+|+|+|.-++..|... ..++...|+. ..+.....|...++     .. ++.....+|...  .+...+||  
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~--  162 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP--  162 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh-cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc--
Confidence            4579999999998888777754 6788888864 33333333332222     21 354544455442  23333322  


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                       +|.+..  .|++....      ..+.++..++..|..+|.+++.+.-
T Consensus       163 -~Dlila--sDvvy~~~------~~e~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  163 -FDLILA--SDVVYEEE------SFEGLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             -ccEEEE--eeeeecCC------cchhHHHHHHHHHhcCCeEEEEEec
Confidence             343322  22221111      3357888888899999988887653

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=93.42  E-value=0.57  Score=44.14  Aligned_cols=119  Identities=15%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-C---CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh---cC--C
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-K---DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV---AS--Y  216 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p---~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv---sn--p  216 (336)
                      ++.+|||+|.-.|.=++.|.+.. +   ...+++=|.++..+.............++.+...|+... +.+.   +|  .
T Consensus       155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~  233 (375)
T KOG2198|consen  155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE  233 (375)
T ss_pred             CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence            46799999999999887776653 2   237999999999988887776554445555555554321 2211   11  2


Q ss_pred             CCeEEEEEeeCC---CCCCCc------c-hhhhh-----cchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          217 PGKLILVSIQCP---NPDFNR------P-EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       217 p~~~d~i~~~~~---dp~~~~------~-~~~~~-----l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      .+.+|.|.+..|   |.+..+      . ....+     .++-.++....+.||+||+++-.|-
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC  297 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC  297 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            234666654322   111111      0 00111     2346889999999999999998763

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.28  E-value=0.38  Score=46.07  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=17.6

Q ss_pred             hHHHHHHHHhcCcCCcEEEEEe
Q 019743          243 QRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       243 ~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...|++.=++-|.|||++++..
T Consensus       216 ~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        216 LAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             HHHHHHHHHHHhccCcEEEEEE
Confidence            3567777788899999999954

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.09  E-value=1.4  Score=39.45  Aligned_cols=113  Identities=10%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             CCeEEEEeccccHHHHHHHH----hCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMAR----KRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~----~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      .-..+|+|+|+-.=+..|..    +..-.+++.+|+|...++...+.+..... -.+.-+.+|....+.    .+|..-.
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La----~~~~~~~  154 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALA----ELPRGGR  154 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHh----cccCCCe
Confidence            45789999998765555444    33347899999999988766555543321 125556777654322    2343323


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  267 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~  267 (336)
                      .++.. +-...-...+.   -...|+.++...|.||-.+.+-.|..
T Consensus       155 Rl~~f-lGStlGN~tp~---e~~~Fl~~l~~a~~pGd~~LlGvDl~  196 (321)
T COG4301         155 RLFVF-LGSTLGNLTPG---ECAVFLTQLRGALRPGDYFLLGVDLR  196 (321)
T ss_pred             EEEEE-ecccccCCChH---HHHHHHHHHHhcCCCcceEEEecccc
Confidence            33221 11110000010   12479999999999999999966543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.08  E-value=0.67  Score=44.36  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n  189 (336)
                      +.+||.+|||+ |.+++.+|+.....+++++|.+++.++.+++.
T Consensus       185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            56899999998 99999999987544699999999998888754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=92.93  E-value=0.076  Score=50.64  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=53.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTF  209 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~  209 (336)
                      +..|.|+.||-|-+++.+++.  +++|++-|.++++++..+.|+..+.+.  ++..+..|+..++
T Consensus       250 gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  250 GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            578999999999999999988  599999999999999999999887764  4888888886643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.71  E-value=0.4  Score=45.05  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CCeEEEEec-cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGc-GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|+=+|+ |.|.+++.+|+.. .++|+++|+|++-++.|++    .|.+.  ++.   .|..+....       .+|.
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~----lGAd~--~i~~~~~~~~~~~~~-------~~d~  232 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKK----LGADH--VINSSDSDALEAVKE-------IADA  232 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHH----hCCcE--EEEcCCchhhHHhHh-------hCcE
Confidence            456655555 5788999999976 4999999999999888864    34332  222   222222111       1344


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +....+ +              .-+....+.|++||++.+
T Consensus       233 ii~tv~-~--------------~~~~~~l~~l~~~G~~v~  257 (339)
T COG1064         233 IIDTVG-P--------------ATLEPSLKALRRGGTLVL  257 (339)
T ss_pred             EEECCC-h--------------hhHHHHHHHHhcCCEEEE
Confidence            333322 2              456777788999999888

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=92.61  E-value=0.61  Score=36.88  Aligned_cols=88  Identities=11%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCc
Q 019743          156 GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPDFNR  234 (336)
Q Consensus       156 GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~  234 (336)
                      |.|.+++.+|+... .+++++|.++..++.+++    .|.+.+... ..|+.+.+..+.  +...+|.++-...      
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~--~~~~~d~vid~~g------   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT--GGRGVDVVIDCVG------   67 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT--TTSSEEEEEESSS------
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc--ccccceEEEEecC------
Confidence            56889999999985 999999999998888754    453332211 122333333333  2234555433211      


Q ss_pred             chhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          235 PEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       235 ~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                              ....++.+.+.|+++|++.+..
T Consensus        68 --------~~~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   68 --------SGDTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             --------SHHHHHHHHHHEEEEEEEEEES
T ss_pred             --------cHHHHHHHHHHhccCCEEEEEE
Confidence                    1377888899999999999843

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK13699 putative methylase; Provisional

Probab=92.41  E-value=0.74  Score=40.85  Aligned_cols=42  Identities=10%  Similarity=0.066  Sum_probs=31.5

Q ss_pred             hHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          243 QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       243 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      ...++.+++++|||||.+++-+++.. ...+...+.+.||...
T Consensus        51 ~~~~l~E~~RVLKpgg~l~if~~~~~-~~~~~~al~~~GF~l~   92 (227)
T PRK13699         51 LQPACNEMYRVLKKDALMVSFYGWNR-VDRFMAAWKNAGFSVV   92 (227)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEecccc-HHHHHHHHHHCCCEEe
Confidence            46888999999999999988666533 3445667788888643

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.39  E-value=2.1  Score=39.49  Aligned_cols=127  Identities=19%  Similarity=0.153  Sum_probs=76.5

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  228 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~  228 (336)
                      +++|+-||.|.+.+.+.+.. --.+.++|+++.+.+.-+.|..       ....+|+.+.-..-+  |+ .+|.+...+|
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l--~~-~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDL--PK-DVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHH--HH-T-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccc--cc-cceEEEeccC
Confidence            58999999999999998775 2358899999999998888763       677888876422223  33 3676666655


Q ss_pred             CCCCCcch-hh----hh-cchHHHHHHHHhcCcCCcEEEEEe-------CcHHHHHHHHHHHHHcCCcceeee
Q 019743          229 NPDFNRPE-HR----WR-MVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       229 dp~~~~~~-~~----~~-l~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      -..+.... ..    .| ..+..+++.+ +.++|. .+++|-       ........+.+.|.+.||......
T Consensus        71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~v  141 (335)
T PF00145_consen   71 CQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRV  141 (335)
T ss_dssp             -TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CceEeccccccccccccchhhHHHHHHH-hhccce-EEEecccceeeccccccccccccccccccceeehhcc
Confidence            43333222 11    11 1234555544 346774 455543       112346788888999998765443

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.30  E-value=2.6  Score=32.60  Aligned_cols=106  Identities=16%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCC
Q 019743          155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF  232 (336)
Q Consensus       155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~  232 (336)
                      ||.|.++..+++..  .+..++.+|.+++.++.+++    .+   +.++.+|..+. +.+-.-.-...+.+.+..++.. 
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~~-~~l~~a~i~~a~~vv~~~~~d~-   74 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG---VEVIYGDATDP-EVLERAGIEKADAVVILTDDDE-   74 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTSH-HHHHHTTGGCESEEEEESSSHH-
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc---cccccccchhh-hHHhhcCccccCEEEEccCCHH-
Confidence            77788888887753  23489999999998777643    23   67889998753 1111101223455555544321 


Q ss_pred             CcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          233 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       233 ~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                                .-..+....+-+.|...++.......+.    +.|...|..
T Consensus        75 ----------~n~~~~~~~r~~~~~~~ii~~~~~~~~~----~~l~~~g~d  111 (116)
T PF02254_consen   75 ----------ENLLIALLARELNPDIRIIARVNDPENA----ELLRQAGAD  111 (116)
T ss_dssp             ----------HHHHHHHHHHHHTTTSEEEEEESSHHHH----HHHHHTT-S
T ss_pred             ----------HHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCcC
Confidence                      1123344456677888999988765543    344555544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=92.20  E-value=3.4  Score=36.18  Aligned_cols=61  Identities=16%  Similarity=0.274  Sum_probs=45.8

Q ss_pred             CCeEEEEecccc----HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH
Q 019743          147 QPLVVDIGSGNG----LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG----~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~  207 (336)
                      ...+++.+|+.|    .++++.|.+..+.++++|-.++..+...++.+...++.+ ++|+.++..+
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e  107 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE  107 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence            567999977654    344555666778999999999888888888877777655 6999988543

The function of this family is unknown.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=91.71  E-value=0.33  Score=42.45  Aligned_cols=111  Identities=11%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCCeEEEEE-
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVS-  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~~~d~i~-  224 (336)
                      ..++|||||=|....+.-   .+-..|+.||+++.          .     -.+.+.|.++.   -+ .++...+|.|. 
T Consensus        52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~----------~-----~~I~qqDFm~r---plp~~~~e~FdvIs~  110 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ----------H-----PGILQQDFMER---PLPKNESEKFDVISL  110 (219)
T ss_pred             cceEEeecccCCCCcccc---cCceeeEEeecCCC----------C-----CCceeeccccC---CCCCCcccceeEEEE
Confidence            368999999766554443   44567999999862          1     12345555432   01 11223344432 


Q ss_pred             ---ee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcE-----EEEEeC-----cHHH--HHHHHHHHHHcCCcceeee
Q 019743          225 ---IQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQSD-----IEEV--MLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       225 ---~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~-----l~~~~~-----~~~~--~~~~~~~l~~~g~~~~~~~  288 (336)
                         ++ .|+|.          -.-+.+..+.+.|+|+|.     +++...     +..|  .+.+.++|...||..+...
T Consensus       111 SLVLNfVP~p~----------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~  180 (219)
T PF11968_consen  111 SLVLNFVPDPK----------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK  180 (219)
T ss_pred             EEEEeeCCCHH----------HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence               33 35552          123788999999999999     887442     1122  3467788999999876543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.43  E-value=0.54  Score=46.04  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCC--eEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDL--NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~--~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..|+|+.+|.|.|+.+|... |-.  +|+-+ ..++.+...-    ..|+   .=+..|+-+.    ||.-|..+|.++.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~vIy----dRGL---IG~yhDWCE~----fsTYPRTYDLlHA  433 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPVIY----DRGL---IGVYHDWCEA----FSTYPRTYDLLHA  433 (506)
T ss_pred             eeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchhhh----hccc---chhccchhhc----cCCCCcchhheeh
Confidence            46999999999999999754 211  22222 1222222221    1222   1233456553    2334555665554


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      ...-     .....+.....++-++-|.|+|+|.+++.- ..+....++.++.+..|...
T Consensus       434 ~~lf-----s~~~~rC~~~~illEmDRILRP~G~~iiRD-~~~vl~~v~~i~~~lrW~~~  487 (506)
T PF03141_consen  434 DGLF-----SLYKDRCEMEDILLEMDRILRPGGWVIIRD-TVDVLEKVKKIAKSLRWEVR  487 (506)
T ss_pred             hhhh-----hhhcccccHHHHHHHhHhhcCCCceEEEec-cHHHHHHHHHHHHhCcceEE
Confidence            3110     011223445789999999999999999954 45778899999999888754

; GO: 0008168 methyltransferase activity

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.70  E-value=0.96  Score=41.99  Aligned_cols=95  Identities=13%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch--hH---HHHhhh--cCCC
Q 019743          146 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA--TS---TFRSIV--ASYP  217 (336)
Q Consensus       146 ~~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~--~~---~~d~iv--snpp  217 (336)
                      .+.++|=+|+| .|..+...|+..-..+|+.+|+++..++.|++    .|.+.+.......  ..   ..+..+  .+|+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d  244 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKKQPD  244 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence            36789999999 68888888999888899999999999999986    3554433332211  11   122222  1234


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.++.--                  ...-++.+...+++||.+.+
T Consensus       245 ~~~dCsG------------------~~~~~~aai~a~r~gGt~vl  271 (354)
T KOG0024|consen  245 VTFDCSG------------------AEVTIRAAIKATRSGGTVVL  271 (354)
T ss_pred             eEEEccC------------------chHHHHHHHHHhccCCEEEE
Confidence            4443211                  12556667788999999766

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.50  E-value=1.8  Score=40.73  Aligned_cols=20  Identities=20%  Similarity=0.175  Sum_probs=14.7

Q ss_pred             CCeEEEEeccccHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMAR  166 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~  166 (336)
                      .-+|+|+||.+|..++.+..
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~   36 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVS   36 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHH
T ss_pred             ceEEEecCCCCCccHHHHHH
Confidence            45899999999998887654

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.88  E-value=0.83  Score=44.57  Aligned_cols=102  Identities=10%  Similarity=0.086  Sum_probs=67.8

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe---
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI---  225 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~---  225 (336)
                      +++-+|||.=.+...+-+.. ...++-+|+|+-+++.....-. ....-..+...|+...   .+  ++.+++.+..   
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l---~f--edESFdiVIdkGt  123 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQL---VF--EDESFDIVIDKGT  123 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhc---cC--CCcceeEEEecCc
Confidence            79999999999888876653 4569999999999988765432 2223477888887653   22  4555554321   


Q ss_pred             ---eCCC---CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 ---QCPN---PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ---~~~d---p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                         .+.+   +|..       ......+.++.++|++||+....+
T Consensus       124 lDal~~de~a~~~~-------~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  124 LDALFEDEDALLNT-------AHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             cccccCCchhhhhh-------HHhhHHHhhHHHHhccCCEEEEEE
Confidence               1111   1111       123467889999999999976644

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.01  E-value=2.7  Score=39.80  Aligned_cols=96  Identities=14%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             CeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEEEEEe
Q 019743          148 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       148 ~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+|+=+||| -|.+++.+|+.....+++++|+++..++.|++..   +.+.+..... +.......+ .+. .-+|.++-
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~-t~g-~g~D~vie  244 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILEL-TGG-RGADVVIE  244 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHH-hCC-CCCCEEEE
Confidence            379999999 5888888999988899999999999999997632   2221212112 221111111 111 12444332


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ...              ....+.++.+.++|+|.+.+
T Consensus       245 ~~G--------------~~~~~~~ai~~~r~gG~v~~  267 (350)
T COG1063         245 AVG--------------SPPALDQALEALRPGGTVVV  267 (350)
T ss_pred             CCC--------------CHHHHHHHHHHhcCCCEEEE
Confidence            211              12577888899999999998

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=87.70  E-value=0.49  Score=42.61  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=35.4

Q ss_pred             CeEEEEeccccHHHHHHHHhC----C----CCeEEEEecChHHHHHHHHHHHH
Q 019743          148 PLVVDIGSGNGLFLLGMARKR----K----DLNFLGLEVNGKLVTHCRDSLQL  192 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~----p----~~~v~giDis~~~l~~a~~n~~~  192 (336)
                      ..|+|+|.|+|.++..+++..    |    ..+++-||+|+.+.+.-++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            689999999999998887642    2    36899999999998888777654

; PDB: 4F3N_A 1ZKD_B.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=87.45  E-value=6.5  Score=36.46  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC  186 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a  186 (336)
                      ..+||==|||.|.++..||...+.  +-|=|.|--|+-..
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~S  188 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLICS  188 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHHH
Confidence            568999999999999999999654  44558887776443

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=87.01  E-value=2  Score=42.51  Aligned_cols=96  Identities=10%  Similarity=0.210  Sum_probs=65.5

Q ss_pred             CeEEEEeccccHHHHHHHH---h-CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCC-CeEE
Q 019743          148 PLVVDIGSGNGLFLLGMAR---K-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYP-GKLI  221 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~---~-~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp-~~~d  221 (336)
                      .+|+=+|.|-|-+.-...+   . ....+++++|.+|.|+-..+. ...... .+|+++.+|+...      ||| +..|
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w------~ap~eq~D  441 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKW------NAPREQAD  441 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEecccccc------CCchhhcc
Confidence            4688999999987655433   2 346789999999999987755 222333 4599999998653      144 4444


Q ss_pred             EEE----eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEE
Q 019743          222 LVS----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV  260 (336)
Q Consensus       222 ~i~----~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  260 (336)
                      .++    -.|.|-          ...++.+.-+.+.|||+|..
T Consensus       442 I~VSELLGSFGDN----------ELSPECLDG~q~fLkpdgIs  474 (649)
T KOG0822|consen  442 IIVSELLGSFGDN----------ELSPECLDGAQKFLKPDGIS  474 (649)
T ss_pred             chHHHhhccccCc----------cCCHHHHHHHHhhcCCCceE
Confidence            332    123333          25678999999999999754

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=86.33  E-value=1.9  Score=38.33  Aligned_cols=74  Identities=19%  Similarity=0.154  Sum_probs=45.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHH---HHHHHhCC------CcEEEEecchhHHHHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR---DSLQLSGI------TNGYFIATNATSTFRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~---~n~~~~~~------~nv~~~~~d~~~~~d~ivsnpp  217 (336)
                      .+.|||.=+|-|.=++.+|..  +++|+++|.||-.....+   +++....-      .+++++++|..+.+.    .++
T Consensus        76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~  149 (234)
T PF04445_consen   76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD  149 (234)
T ss_dssp             ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred             CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence            468999999999999999876  689999999987655444   34333221      369999999887644    246


Q ss_pred             CeEEEEEee
Q 019743          218 GKLILVSIQ  226 (336)
Q Consensus       218 ~~~d~i~~~  226 (336)
                      .++|.|++.
T Consensus       150 ~s~DVVY~D  158 (234)
T PF04445_consen  150 NSFDVVYFD  158 (234)
T ss_dssp             S--SEEEE-
T ss_pred             CCCCEEEEC
Confidence            677877763

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=85.99  E-value=1.3  Score=42.05  Aligned_cols=41  Identities=24%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      -+.++|+|.|-|.++..++-.+ +..|.|||-|....+.|++
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            4679999999999999998877 7899999999766666643

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=85.77  E-value=7.8  Score=35.69  Aligned_cols=95  Identities=12%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||..|+| .|..++.+|+.. +.++++++.+++..+.+++    .+.+.+...+. +....+ ...  +...+|.+ 
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~v-  236 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG--LGGGFDVI-  236 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh--cCCCceEE-
Confidence            4577778876 478888888876 5789999999988777643    34432221111 111111 111  22334543 


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +.+..             ....++++.+.|+++|+++..
T Consensus       237 id~~g-------------~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         237 FDFVG-------------TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             EECCC-------------CHHHHHHHHHHhhcCCEEEEE
Confidence            22211             125677888999999998863

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.69  E-value=2.2  Score=37.77  Aligned_cols=101  Identities=14%  Similarity=0.111  Sum_probs=62.0

Q ss_pred             CeEEEEeccccHHHHHHHHhC----C-C----CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHh---hh
Q 019743          148 PLVVDIGSGNGLFLLGMARKR----K-D----LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRS---IV  213 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~----p-~----~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~---iv  213 (336)
                      .+++|+|...|.++..|+++.    | .    ..+++||+.+-+           .++.|.-+++|+...  ...   .|
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~hf  111 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEHF  111 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHHh
Confidence            579999999999999998862    1 1    139999986532           456788899998641  222   34


Q ss_pred             cCCCCeEEEEEee-CCCCCCCcchhhh----hcchHHHHHHHHhcCcCCcEEEEE
Q 019743          214 ASYPGKLILVSIQ-CPNPDFNRPEHRW----RMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       214 snpp~~~d~i~~~-~~dp~~~~~~~~~----~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      .|.+.  |.+... -||..  --|.-+    ..+.-..+.....+|+|||.|+-.
T Consensus       112 ggekA--dlVvcDGAPDvT--GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  112 GGEKA--DLVVCDGAPDVT--GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             CCCCc--cEEEeCCCCCcc--ccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            44443  322221 23321  122111    112235566778899999998873

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=85.48  E-value=2.4  Score=34.76  Aligned_cols=42  Identities=17%  Similarity=0.152  Sum_probs=28.2

Q ss_pred             EEecccc--HHHHHHH--HhCCCCeEEEEecChHHHHHHHHH--HHHh
Q 019743          152 DIGSGNG--LFLLGMA--RKRKDLNFLGLEVNGKLVTHCRDS--LQLS  193 (336)
Q Consensus       152 DiGcGsG--~~~~~la--~~~p~~~v~giDis~~~l~~a~~n--~~~~  193 (336)
                      |||+..|  .....++  ...|..+++++|.++..++..++|  +..+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  5555443  457899999999999999999999  5554

; PDB: 2PY6_A.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=85.07  E-value=3.3  Score=33.04  Aligned_cols=76  Identities=9%  Similarity=0.028  Sum_probs=48.8

Q ss_pred             cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHH
Q 019743          197 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ  276 (336)
Q Consensus       197 nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  276 (336)
                      ++++..+|+.+.+..+    +..+|.++..--.|.   ..  ..+-...+++.+++.++|||.+.--+    .+..+++.
T Consensus        32 ~L~L~~gDa~~~l~~l----~~~~Da~ylDgFsP~---~n--PelWs~e~~~~l~~~~~~~~~l~Tys----~a~~Vr~~   98 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL----DARFDAWYLDGFSPA---KN--PELWSEELFKKLARLSKPGGTLATYS----SAGAVRRA   98 (124)
T ss_dssp             EEEEEES-HHHHHHHB-----T-EEEEEE-SS-TT---TS--GGGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred             EEEEEEcHHHHHHHhC----cccCCEEEecCCCCc---CC--cccCCHHHHHHHHHHhCCCcEEEEee----chHHHHHH
Confidence            3677889987765443    356777766421111   11  12456799999999999999887633    24568899


Q ss_pred             HHHcCCcce
Q 019743          277 FLEYGKGKL  285 (336)
Q Consensus       277 l~~~g~~~~  285 (336)
                      |.+.||...
T Consensus        99 L~~aGF~v~  107 (124)
T PF05430_consen   99 LQQAGFEVE  107 (124)
T ss_dssp             HHHCTEEEE
T ss_pred             HHHcCCEEE
Confidence            999999854

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=83.10  E-value=11  Score=35.33  Aligned_cols=126  Identities=16%  Similarity=0.169  Sum_probs=72.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+++|+-||.|.+.+.+.... ---+.++|+++.+++.-+.|..     ...+++.|..+....-+  +.+.+|.+.-.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~--~~~~~DvligG   74 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEAL--RKSDVDVLIGG   74 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhc--cccCCCEEEeC
Confidence            4689999999999998887765 2347799999999998877653     24456667654322111  12234544444


Q ss_pred             CCCCCCCcch-------hhhhcchHHHHHHHHhcCcCCcEEEEEeC------cHHHHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNRPE-------HRWRMVQRSLVEAVSDLLVHDGKVFLQSD------IEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~~~-------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~~~~~~l~~~g~~  283 (336)
                      +|-..+....       .+..|+ -.+++ +...++| -.+++|--      .....+.+.+.|++.||.
T Consensus        75 pPCQ~FS~aG~r~~~~D~R~~L~-~~~~r-~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          75 PPCQDFSIAGKRRGYDDPRGSLF-LEFIR-LIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG  141 (328)
T ss_pred             CCCcchhhcCcccCCcCccceee-HHHHH-HHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence            4332222111       112222 23333 3345677 45555321      112456788889999986

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=83.06  E-value=1.2  Score=34.47  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH-----HHHHHHHHHHc
Q 019743          209 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMKQQFLEY  280 (336)
Q Consensus       209 ~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~~~~~~l~~~  280 (336)
                      ||.++.||||.-..-..   ....  ......-.|..|++...+.|  +|.+.+.+.....     +..+++.+.+.
T Consensus         3 FD~VIGNPPY~~~~~~~---~~~~--~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~   72 (106)
T PF07669_consen    3 FDVVIGNPPYIKIKSLS---KKKK--KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN   72 (106)
T ss_pred             cCEEEECCCChhhcccc---chhh--cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence            78899999996321100   0000  00012245678899998888  9999776654332     34555555443

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=82.39  E-value=15  Score=36.73  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=35.1

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      +.+|+=+||| -|..++..|+.. +++|+++|.+++.++.+++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            6789999999 577888888877 5689999999999988864

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=82.05  E-value=2.1  Score=38.83  Aligned_cols=60  Identities=10%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-----CCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-----p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~  207 (336)
                      ...++|+|||.|.++..+++..     +...++.||...... .+-........ ..++=+..|+.+
T Consensus        19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d   84 (259)
T PF05206_consen   19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD   84 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence            5689999999999999999987     567999999865433 22233322221 235556667655

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=81.91  E-value=14  Score=37.89  Aligned_cols=95  Identities=18%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             ccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCC
Q 019743          155 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF  232 (336)
Q Consensus       155 cGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~  232 (336)
                      ||.|.++..+++.  ..+..++.+|.+++.++.+++    .|   ...+.+|+.+. +..-.-.-...+.+.+..+|+. 
T Consensus       406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~-~~L~~agi~~A~~vv~~~~d~~-  476 (601)
T PRK03659        406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---YKVYYGDATQL-ELLRAAGAEKAEAIVITCNEPE-  476 (601)
T ss_pred             ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCH-HHHHhcCCccCCEEEEEeCCHH-
Confidence            6777788777764  246789999999999887753    23   56788998653 1111000112334444444432 


Q ss_pred             CcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          233 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       233 ~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                               ....+. ...+.+.|...++....+..
T Consensus       477 ---------~n~~i~-~~~r~~~p~~~IiaRa~~~~  502 (601)
T PRK03659        477 ---------DTMKIV-ELCQQHFPHLHILARARGRV  502 (601)
T ss_pred             ---------HHHHHH-HHHHHHCCCCeEEEEeCCHH
Confidence                     112333 33445678888887665433

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=81.65  E-value=9.4  Score=36.64  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             CeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc-------CCCC
Q 019743          148 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-------SYPG  218 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs-------npp~  218 (336)
                      .+|-=+|  -|.+++.+|-.  ..+.+|+|+||++..++...     .|.  .....-+....+...++       +-+.
T Consensus        10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln-----~G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~   80 (436)
T COG0677          10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN-----RGE--SYIEEPDLDEVVKEAVESGKLRATTDPE   80 (436)
T ss_pred             eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHh-----CCc--ceeecCcHHHHHHHHHhcCCceEecChh
Confidence            3444444  45555555544  34689999999999888652     232  23333333321111111       0111


Q ss_pred             ---eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHHHH
Q 019743          219 ---KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLE  279 (336)
Q Consensus       219 ---~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l~~  279 (336)
                         ..|.+.+..|.|..+.. .-+........+.+...|++|-.+++|+-. ..--+++..-+.+
T Consensus        81 ~l~~~dv~iI~VPTPl~~~~-~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          81 ELKECDVFIICVPTPLKKYR-EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             hcccCCEEEEEecCCcCCCC-CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence               22444455666653321 112233467888999999999999997632 2234444444433

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=81.63  E-value=15  Score=31.75  Aligned_cols=117  Identities=17%  Similarity=0.274  Sum_probs=71.6

Q ss_pred             cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHH
Q 019743          116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      |...-.|.+.+-..+                ...|+|+|+-.|..++..|..    ....+|+++||+-..++-+...  
T Consensus        55 p~D~~~yQellw~~~----------------P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--  116 (237)
T COG3510          55 PSDMWNYQELLWELQ----------------PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--  116 (237)
T ss_pred             HHHHHHHHHHHHhcC----------------CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--
Confidence            556666776664422                568999999999888887764    2457899999997766555332  


Q ss_pred             HhCCCcEEEEecchhH-----HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          192 LSGITNGYFIATNATS-----TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       192 ~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                         .+++.|++++..+     ..+..-+-+|-.+.   +.-.|..     +.+-   -+-++....+|..|-++.++.
T Consensus       117 ---~p~i~f~egss~dpai~eqi~~~~~~y~kIfv---ilDsdHs-----~~hv---LAel~~~~pllsaG~Y~vVeD  180 (237)
T COG3510         117 ---VPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV---ILDSDHS-----MEHV---LAELKLLAPLLSAGDYLVVED  180 (237)
T ss_pred             ---CCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE---EecCCch-----HHHH---HHHHHHhhhHhhcCceEEEec
Confidence               5689999998753     23333222332221   2211211     1111   144566677888888888853

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=80.33  E-value=4.3  Score=38.37  Aligned_cols=47  Identities=21%  Similarity=0.381  Sum_probs=37.6

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CC----CCeEEEEecChHHHHHHHHHHHHh
Q 019743          147 QPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLEVNGKLVTHCRDSLQLS  193 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~----~p----~~~v~giDis~~~l~~a~~n~~~~  193 (336)
                      .-.++|||.|+|.++..+++.    .|    .+++.-||+|++..+.=+++++..
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            457999999999999887654    34    688999999999887777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
1vpe_A	398	Crystallographic Analysis Of Phosphoglycerate Kinas		4e-13
1v6s_A	390	Crystal Structure Of Phosphoglycerate Kinase From T		1e-12
2ie8_A	390	Crystal Structure Of Thermus Caldophilus Phosphogly		2e-12
13pk_A	415	Ternary Complex Of Phosphoglycerate Kinase From Try		3e-12
3uwd_A	394	Crystal Structure Of Phosphoglycerate Kinase From B		2e-11
1php_A	394	Structure Of The Adp Complex Of The 3-Phosphoglycer		3e-10
3oz7_A	417	Crystal Structure Of 3-Phosphopglycerate Kinase Of		1e-08
1fw8_A	416	Circularly Permuted Phosphoglycerate Kinase From Ye		1e-08
1qpg_A	415	3-Phosphoglycerate Kinase, Mutation R65q Length = 4		1e-08
4dg5_A	403	Crystal Structure Of Staphylococcal Phosphoglycerat		2e-08
3pgk_A	416	The Structure Of Yeast Phosphoglycerate Kinase At 0		6e-08
2xe6_A	417	The Complete Reaction Cycle Of Human Phosphoglycera		9e-08
2y3i_A	416	The Structure Of The Fully Closed Conformation Of H		9e-08
2zgv_A	420	Crystal Structure Of Human Phosphoglycerate Kinase		9e-08
2wzb_A	416	The Catalytically Active Fully Closed Conformation		9e-08
1vjc_A	416	Structure Of Pig Muscle Pgk Complexed With Mgatp Le		1e-07
3q3v_A	403	Crystal Structure Of Phosphoglycerate Kinase From C		2e-07
3ckk_A	235	Crystal Structure Of Human Methyltransferase-Like P		2e-07
1kf0_A	416	Crystal Structure Of Pig Muscle Phosphoglycerate Ki		3e-07
2x14_A	416	The Catalytically Active Fully Closed Conformation		4e-07
2wzd_A	417	The Catalytically Active Fully Closed Conformation		4e-07
3oza_A	424	Crystal Structure Of Plasmodium Falciparum 3-Phosph		4e-07
1ltk_A	425	Crystal Structure Of Phosphoglycerate Kinase From P		5e-07
1hdi_A	413	Pig Muscle 3-Phosphoglycerate Kinase Complexed With		6e-07
3dxx_A	218	Crystal Structure Of Ectrmb Length = 218		9e-07
1yzh_A	214	Crystal Structure Of The Conserved Hypothetical Pro		2e-06
2fca_A	213	The Structure Of Bstrmb Length = 213		3e-06
2p9q_A	416	Crystal Structure Of Phosphoglycerate Kinase-2 Leng		1e-05

>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From The Hyperthermophilic Bacterium Thermotoga Maritima Length = 398

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +   P   +  +    GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCK 130
             ++  K
Sbjct: 305 QKLSDAK 311

>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus Thermophilus Hb8 Length = 390

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D     +I    +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCK 130
            +   +
Sbjct: 303 ALEGAR 308

>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate Kinase In The Open Conformation Length = 390

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D     +I    +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCK 130
            +   +
Sbjct: 303 ALEGAR 308

>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma Brucei Length = 415

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67  SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKA 131
           I KCK+
Sbjct: 325 IGKCKS 330

>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus Anthracis Length = 394

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+AAIIGG  + +K   +  L  + D LI  G +++  + ALG  +   L E    + 
Sbjct: 186 ERPFAAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A +  Q A++K +    P D   T +       +I     IP  WE VDIGP++ E    
Sbjct: 246 AKEFXQLAKEKGVNFYXPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305
Query: 125 TITKCK 130
            I   K
Sbjct: 306 VIKNSK 311

>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms Length = 394

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D     +  +    ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCK 130
            I + K
Sbjct: 306 VIRESK 311

>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of Plasmodium Falciparum Length = 417

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++     L  + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF        N    F +   GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKA 131
              I   K 
Sbjct: 326 KDVILTSKT 334

>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast: Pgk P72 Length = 416

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   + 
Sbjct: 133 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 192
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 193 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 252
Query: 124 STITKCK 130
           +T+ K K
Sbjct: 253 ATVAKAK 259

>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q Length = 415

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   + 
Sbjct: 203 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 262
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 263 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322
Query: 124 STITKCK 130
           +T+ K K
Sbjct: 323 ATVAKAK 329

>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate Kinase Length = 403

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           KP  AI+GG  + +K   +  L +  D +I  G M++  + A G  +   L+E+   D A
Sbjct: 199 KPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFA 258
Query: 67  SDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVE 120
            DL++   DK   I+ P D    K   +  ++ + PS  IP   E +DIGP +V+
Sbjct: 259 KDLLEKHGDK---IVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVK 310

>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Resolution Length = 416

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K     
Sbjct: 204 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAVGPE 263
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
            + L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 264 IAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFA 323
Query: 124 STITKC 129
           +T+ K 
Sbjct: 324 ATVAKA 329

>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate Kinase: The Open Binary Complex With 3pg Length = 417

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 325 AEAVTRAK 332

>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium Tetrafluoride Length = 416

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 325 AEAVTRAK 332

>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound To D-Adp Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 208 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 267
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 268 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 327
Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 328 AEAVTRAK 335

>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride Length = 416

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 324 AEAVTRAK 331

>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp Length = 416

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++  + 
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
           +  + + K
Sbjct: 324 SEAVARAK 331

>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Campylobacter Jejuni. Length = 403

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P+ A++GG  +  K  AL  L  + D LI  G  +F  + ALG  +   L+E+   + A
Sbjct: 194 RPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGXAFTFLKALGYDIGNSLLEEELLEEA 253
Query: 67  SDLIQFARDKHITILYPKDFWCTKIHHPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITST 125
           + ++   ++  + I  P D         +    F P+  IP+GW  +DIGP SV      
Sbjct: 254 NKILTKGKNLGVKIYLPVDVVAAPACSQDVPXKFVPAQEIPNGWXGLDIGPASVRLFKEV 313
Query: 126 ITKCKAF 132
           I+  +  
Sbjct: 314 ISDAQTI 320

>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------SGITNGY 199
           AQ    DIG G G  L+ ++    D   LGLE+  K+  + +D ++        G  N  
Sbjct: 46  AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIA 105
Query: 200 FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 259
            + +NA     +    Y G+L  +    P+P F R +H+WR++  +L+   + +L   G 
Sbjct: 106 CLRSNAMKHLPNFF--YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGL 163
Query: 260 VFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 290
           V+  +D+ E+   M   F E+   + V ++D
Sbjct: 164 VYTITDVLELHDWMCTHFEEHPLFERVPLED 194

>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase Ternary Complex With Amp-Pcp And 3pg Length = 416

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              +L+  A    + I  P DF        H    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
           +  + + K
Sbjct: 324 SEAVARAK 331

>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Amp-Pcp And 3pg Length = 416

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +    ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 324 AEAVTRAK 331

>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Adp, 3pg And Aluminium Trifluoride Length = 417

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +    ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 325 AEAVTRAK 332

>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum 3-Phosphoglycerate Kinase Length = 424

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D  I  G  ++     L    +   L ++  + 
Sbjct: 212 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 271
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
              ++ + A+ K++ I  P DF        N    F +   GIPD W  +D GP+S+E  
Sbjct: 272 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 331
Query: 123 TSTITKCKA 131
              I   K 
Sbjct: 332 KDVILTSKT 340

>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Plasmodium Falciparum, In The Open Conformation Length = 425

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D  I  G  ++     L    +   L ++  + 
Sbjct: 213 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 272
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
              ++ + A+ K++ I  P DF        N    F +   GIPD W  +D GP+S+E  
Sbjct: 273 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 332
Query: 123 TSTITKCKA 131
              I   K 
Sbjct: 333 KDVILTSKT 341

>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg And Mgadp Length = 413

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI---FPSHGIPDGWEPVDIGPRSVEE 121
              +L+  A    + I  P DF  T      Q +I     + GIP GW  +D GP+S  +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDF-VTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAK 319
Query: 122 ITSTITKCK 130
            +  + + K
Sbjct: 320 YSEAVARAK 328

>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb Length = 218

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
           +D+ A +   A P+ ++IG G G  L+ MA+ R + +FLG+EV+   V  C  S    G+
Sbjct: 25  LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83
Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           +N   +  +A      ++      L +V +  P+P      ++ R+VQ    E V   L 
Sbjct: 84  SNLRVMCHDAVEVLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141
Query: 256 HDGKVFLQSDIE 267
             G   + +D E
Sbjct: 142 LGGVFHMATDWE 153

>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein, Methyltransferase From Streptococcus Pneumoniae Tigr4 Length = 214

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI---AT 203
            P+ V++GSG G F+ G A++  D+N++G+++   ++++  D +   G+ N   +    +
Sbjct: 42  NPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS 101
Query: 204 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263
           + T  F        G++  + +   +P   +   + R+  ++ ++    +L  +G++  +
Sbjct: 102 DLTDYFED------GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 264 SDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAP 323
           +D   +       F +YG  KL  V  +      +G         V +++EQ   ++G  
Sbjct: 156 TDNRGLFEYSLVSFSQYGX-KLNGVWLDLHASDFEG--------NVXTEYEQKFSNKGQV 206
Query: 324 MYRL 327
           +YR+
Sbjct: 207 IYRV 210

>pdb|2FCA|A Chain A, The Structure Of Bstrmb Length = 213

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206
            P+ +++G+G G F+ GMA++  D+N++G+E+   ++      ++ S   N   +  +A 
Sbjct: 39  NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA- 97
Query: 207 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266
            T   +    PG++  V +   +P   +   + R+     ++   +++   G +  ++D 
Sbjct: 98  DTLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155
Query: 267 EEVMLRMKQQFLEYGKGKLVLVQDECDT-KTNQGGWLGENSFGVRSDWEQHVIDRGAPMY 325
             +     + F EYG   L+L     D   +N  G        + +++E+     G P+Y
Sbjct: 156 RGLFEYSLKSFSEYG---LLLTYVSLDLHNSNLEG-------NIMTEYEEKFSALGQPIY 205
Query: 326 R 326
           R
Sbjct: 206 R 206

>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Length = 416

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   +  +  + + +I  G M++  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGAT 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN----QVEIFPSHGIPDGWEPVDIGPRSVE 120
              ++++ A    + I++P DF        N    Q  I    GIP GW  +D GP S++
Sbjct: 264 IVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATI--ESGIPSGWMGLDCGPESIK 321
Query: 121 EITSTITKCK 130
                + + K
Sbjct: 322 INAQIVAQAK 331

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	2e-25
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	2e-22
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	5e-19
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	6e-19
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	7e-19
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	8e-19
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	9e-18
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	2e-17
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	8e-17
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	3e-16
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	7e-16
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	1e-15
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	1e-15
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	2e-15
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	3e-15
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	5e-15
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	1e-14
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	1e-14
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	2e-09
3lpm_A	259	Putative methyltransferase; structural genomics, p	1e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score =  101 bits (253), Expect = 2e-25
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 15/205 (7%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
                D          AQ    DIG G G  L+ ++    D   LGLE+  K+  + +D 
Sbjct: 30  NQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDR 89

Query: 190 LQL------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQ 243
           ++        G  N   + +NA     +      G+L  +    P+P F R +H+WR++ 
Sbjct: 90  IRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKHKWRIIS 147

Query: 244 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 303
            +L+   + +L   G V+  +D+ E+   M   F E+   + V ++D  +          
Sbjct: 148 PTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE-------DPV 200

Query: 304 ENSFGVRSDWEQHVIDRGAPMYRLM 328
               G  ++  + V+  G   +  +
Sbjct: 201 VGHLGTSTEEGKKVLRNGGKNFPAI 225

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score = 93.7 bits (233), Expect = 2e-22
 Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 133 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 183
           P D+DWS  Y             +  + DIG G G  ++ ++    +   LG+E+  ++ 
Sbjct: 27  PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86

Query: 184 THCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 235
            +  D +           G  N   +  NA     +      G+L  +    P+P F + 
Sbjct: 87  NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144

Query: 236 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 281
           +H+ R++  +L+   + +L   G V+  +D++++   M +   E+ 
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394

 Score = 86.0 bits (214), Expect = 5e-19
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D         +   ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305

Query: 125 TITKCK 130
            I + K
Sbjct: 306 VIRESK 311

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390

 Score = 85.6 bits (213), Expect = 6e-19
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D    +      +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302

Query: 125 TITKCK 130
            +   +
Sbjct: 303 ALEGAR 308

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415

 Score = 85.7 bits (213), Expect = 7e-19
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + 
Sbjct: 204 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEF 263

Query: 66  ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   
Sbjct: 264 ARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQ 323

Query: 125 TITKCK 130
           TI KCK
Sbjct: 324 TIGKCK 329

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403

 Score = 85.6 bits (213), Expect = 8e-19
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P+ A++GG  +  K  AL  L  + D LI  G M+F  + ALG  +   L+E+   + 
Sbjct: 193 ARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEE 252

Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ ++   ++  + I  P D            ++  P+  IP+GW  +DIGP SV     
Sbjct: 253 ANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKE 312

Query: 125 TITKCK 130
            I+  +
Sbjct: 313 VISDAQ 318

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395

 Score = 82.5 bits (205), Expect = 9e-18
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++++  A+   + I  P D    K    N Q  I     +      +DIGP S + I  
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAE 304

Query: 125 TITKCK 130
            +    
Sbjct: 305 LLKSAN 310

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +   P  + ++     GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304

Query: 124 STITKCK 130
             ++  K
Sbjct: 305 QKLSDAK 311

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 77.3 bits (191), Expect = 8e-17
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
           +D+ A +   A P+ ++IG G G  L+ MA+ R + +FLG+EV+   V  C  S    G+
Sbjct: 25  LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83

Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
           +N   +  +A      ++      L +V +  P+P      ++ R+VQ    E V   L 
Sbjct: 84  SNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141

Query: 256 HDGKVFLQSDIEE 268
             G   + +D E 
Sbjct: 142 LGGVFHMATDWEP 154

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 24/137 (17%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
             +   W+  + +   P+ +++G+G G F+ GMA++  D+N++G+E+   ++      ++
Sbjct: 25  ADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK 83

Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
            S   N   +  +A  T   +    PG++  V +   +P   +   + R+     ++   
Sbjct: 84  DSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYE 140

Query: 252 DLLVHDGKVFLQSDIEE 268
           +++   G +  ++D   
Sbjct: 141 EVMGKGGSIHFKTDNRG 157

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 74.2 bits (183), Expect = 7e-16
 Identities = 23/137 (16%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
                 W   + +   P+ V++GSG G F+ GMA++  D+N++G+++   ++++  D + 
Sbjct: 28  LEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 86

Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
             G+ N   +  + +           G++  + +   +P   +   + R+  ++ ++   
Sbjct: 87  EVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFK 143

Query: 252 DLLVHDGKVFLQSDIEE 268
            +L  +G++  ++D   
Sbjct: 144 RILPENGEIHFKTDNRG 160

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF             +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323

Query: 123 TSTITKCK 130
              +T+ K
Sbjct: 324 AEAVTRAK 331

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++     L  + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF        N   +      GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325

Query: 123 TSTITKCK 130
              I   K
Sbjct: 326 KDVILTSK 333

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFL--ASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAN 63
           + P   ++GG  + +    +  +    R D ++  GL++     A G  +  + VE    
Sbjct: 189 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKK 248

Query: 64  DAASDLIQFARDK----HITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRS 118
               D ++ A +     +  I  P DF             +  + G+   ++ +DIG R+
Sbjct: 249 KGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRT 308

Query: 119 VEEITSTITKCK 130
            E+    + K +
Sbjct: 309 AEKYREILMKAR 320

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   +
Sbjct: 132 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 191

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF        +   +      GIP GW+ +D GP S +  
Sbjct: 192 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 251

Query: 123 TSTITKCK 130
            +T+ K K
Sbjct: 252 AATVAKAK 259

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF        +   +      GIP GW+ +D GP S +  
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321

Query: 123 TSTITKCK 130
            +T+ K K
Sbjct: 322 AATVAKAK 329

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P  AI+GG  +  K   L  L+   D LI  G ++   + A G  V   L E    D 
Sbjct: 182 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDE 241

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+         I  P D              +   + +    + +DIG  S +E+  
Sbjct: 242 AKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAE 296

Query: 125 TITKCK 130
            +   K
Sbjct: 297 ILKNAK 302

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 70.9 bits (173), Expect = 1e-14
 Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 15/171 (8%)

Query: 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG----KLVTHCRDSL 190
           D ++          +V+D+G+G+G     +AR+      + L+ +     K+        
Sbjct: 17  DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75

Query: 191 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 250
              G+ N  ++   A           P    +  +    P +             ++  +
Sbjct: 76  AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126

Query: 251 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 301
           + +        +  ++      +  +  E+ +       +    +  + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 12/133 (9%)

Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR----DSLQL 192
           + +         + +D+G+G+G  +  +A   ++  ++G++   + +             
Sbjct: 16  ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74

Query: 193 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 252
            G++N  F+   A     S+          +SI  P               R ++  V+D
Sbjct: 75  GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127

Query: 253 LLVHDGKVFLQSD 265
           L   +      + 
Sbjct: 128 LAKKEAHFEFVTT 140

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN---------GYF 200
           ++D+ SGNG+  L ++  R     +G+E+  +L    + S+  + + +            
Sbjct: 53  IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111

Query: 201 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 259
                      +  + P       S++  N  F    H         +   + LL   GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171

Query: 260 VFL---QSDIEEVMLRMKQQFLE 279
                    + +++  M++  LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 19/147 (12%)

Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN------------ 197
           + D+G+G G   + +A + +       E + ++    R SL+L                 
Sbjct: 40  IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99

Query: 198 GYFIATNATSTFRS----IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDL 253
                    +         V   P        + P+            +    +   S +
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI 159

Query: 254 LVHDGK---VFLQSDIEEVMLRMKQQF 277
           +V  G+   +     + E++     +F
Sbjct: 160 MVSGGQLSLISRPQSVAEIIAACGSRF 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	100.0
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	100.0
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	100.0
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	100.0
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	100.0
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	100.0
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	100.0
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	100.0
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	100.0
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	100.0
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	100.0
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	99.98
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.96
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.96
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.96
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.95
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.92
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.89
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.88
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.71
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.71
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.7
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.69
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.69
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.68
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.67
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.67
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.66
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.63
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.63
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.62
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.62
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.6
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.58
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.58
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.57
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.57
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.57
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.57
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.57
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.56
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.56
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.56
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.56
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.55
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.55
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.55
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.55
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.54
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.54
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.54
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.54
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.54
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.54
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.54
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.54
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.53
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.53
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.53
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.53
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.53
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.52
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.52
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.51
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.51
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.51
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.51
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.51
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.51
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.51
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.51
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.51
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.5
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.5
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.49
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.49
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.49
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.49
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.49
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.48
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.48
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.48
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.47
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.47
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.47
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.47
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.46
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.46
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.46
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.46
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.46
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.46
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.46
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.46
3ocj_A	305	Putative exported protein; structural genomics, PS	99.46
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.45
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.45
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.45
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.44
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.44
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.43
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.43
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.43
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.43
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.43
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.42
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.42
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.42
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.41
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.41
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.4
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.4
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.4
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.4
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.4
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.4
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.4
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.39
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.39
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.39
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.39
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.39
2o07_A	304	Spermidine synthase; structural genomics, structur	99.39
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.39
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.38
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.38
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.38
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.38
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.38
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.38
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.38
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.38
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.37
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.37
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.37
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.37
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.36
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.36
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.36
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.35
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.35
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.35
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.35
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.35
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.34
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.34
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.34
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.34
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.34
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.34
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.34
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.34
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.33
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.33
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.33
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.33
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.33
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.33
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.33
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.32
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.31
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.31
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.31
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.31
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.31
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.31
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.31
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.3
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.3
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.3
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.3
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.3
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.29
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.29
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.29
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.29
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.29
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.29
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.29
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.28
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.27
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.27
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.26
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.26
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.26
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.25
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.25
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.24
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.24
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.24
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.23
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.23
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.22
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.22
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.22
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.22
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.22
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.21
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.2
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.2
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.19
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.19
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.19
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.19
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.19
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.18
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.18
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.18
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.18
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.18
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.17
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.17
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.17
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.16
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.16
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.14
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.14
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.14
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.14
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.14
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.14
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.12
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.12
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.12
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.11
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.11
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.1
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.09
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.07
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.06
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.05
3lkd_A	542	Type I restriction-modification system methyltrans	99.05
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.05
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.01
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.99
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.99
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.99
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.99
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.97
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.97
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.96
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.95
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.94
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.94
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.93
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.93
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.92
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.91
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.9
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.9
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.9
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.9
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.9
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.89
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.89
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.88
3khk_A	544	Type I restriction-modification system methylation	98.86
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.86
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.84
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.83
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.83
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.81
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.77
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.72
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.68
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.59
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.49
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.49
3ufb_A	530	Type I restriction-modification system methyltran	98.46
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.46
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.37
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.28
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.25
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.08
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.06
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.01
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.99
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.94
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.89
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.66
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.47
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.44
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.41
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.35
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.31
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.26
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.15
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.04
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.04
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.56
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.53
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.49
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.49
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.46
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.43
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.72
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.7
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.98
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.92
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.82
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.64
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.02
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.96
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.93
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.61
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.23
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.03
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.68
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.59
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.81
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.79
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	91.56
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.81
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.81
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.76
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.74
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.6
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.5
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.39
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	90.26
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	90.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.7
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	89.68
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	89.66
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	89.29
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	89.22
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	89.19
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.17
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.88
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	88.81
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	88.49
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	88.47
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	88.08
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	87.86
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	87.72
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	87.45
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	87.21
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	86.41
3gms_A	340	Putative NADPH:quinone reductase; structural genom	86.27
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	86.24
4eye_A	342	Probable oxidoreductase; structural genomics, niai	86.09
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	86.08
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	85.19
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	85.16
3c85_A	183	Putative glutathione-regulated potassium-efflux S	84.06
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	83.84
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	83.61
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	83.11
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	82.91
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	82.65
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	81.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	81.01
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	80.88

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A

Probab=100.00  E-value=5.1e-36  Score=276.47  Aligned_cols=167  Identities=26%  Similarity=0.430  Sum_probs=143.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++++++++++|++|.
T Consensus       179 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~a~~~g~~i~  258 (390)
T 1v6s_A          179 LKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVY  258 (390)
T ss_dssp             TSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             hcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++++.| .+....+.+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+.+   ...-||=.+
T Consensus       259 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~ak----TivWNGPmGvFE~~---~Fa~GT~~v  331 (390)
T 1v6s_A          259 LPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGAR----TVFWNGPMGVFEVP---PFDEGTLAV  331 (390)
T ss_dssp             CCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCS----EEEEESCSSCTTST---TTTHHHHHH
T ss_pred             CCcChhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCC----EEEEeCCcccccCc---hHHHHHHHH
Confidence            99999999775 34456666788899999999999999999999999999    99999997542222   124455566


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+......++|
T Consensus       332 a~aia~~~~~~sivG  346 (390)
T 1v6s_A          332 GQAIAALEGAFTVVG  346 (390)
T ss_dssp             HHHHHTCSSCEEEEE
T ss_pred             HHHHHhcCCCEEEEC
Confidence            666665422345665

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*

Probab=100.00  E-value=7.3e-36  Score=276.96  Aligned_cols=159  Identities=25%  Similarity=0.423  Sum_probs=140.1

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++|+++++++|++|.
T Consensus       200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~  279 (415)
T 16pk_A          200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI  279 (415)
T ss_dssp             HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++++.| .+....+.+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ...-||=.+
T Consensus       280 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~ak----TivWNGPmGvFE~~---~Fa~GT~~v  352 (415)
T 16pk_A          280 LPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCK----SAIWNGPMGVFEMV---PYSKGTFAI  352 (415)
T ss_dssp             CCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHHHH
T ss_pred             CCceeehhhcccCCCceEEeehhcCCCCCEEeecCHHHHHHHHHHHHhCC----EEEEECCcccccCc---hHHHHHHHH
Confidence            99999999775 34446667788899999999999999999999999999    99999997532211   124456566


Q ss_pred             HHHHHHh
Q 019743          161 LLGMARK  167 (336)
Q Consensus       161 ~~~la~~  167 (336)
                      +.++|+.
T Consensus       353 a~aia~~  359 (415)
T 16pk_A          353 AKAMGRG  359 (415)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            6667663

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A

Probab=100.00  E-value=3.3e-36  Score=277.62  Aligned_cols=166  Identities=23%  Similarity=0.308  Sum_probs=144.5

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++++++++++|++|.
T Consensus       181 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~il~~a~~~g~~i~  260 (395)
T 4fey_A          181 LKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAEATEILAKAKALGVNIP  260 (395)
T ss_dssp             HTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCCCCGGGHHHHHHHHHHHHHTTCBCC
T ss_pred             hcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|++++++| .+.+..+.+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ...-||=.+
T Consensus       261 LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~ak----TIvWNGP~GvFE~~---~Fa~GT~~v  333 (395)
T 4fey_A          261 VPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAELLKSAN----TILWNGPVGVFEFD---NFAEGTKAL  333 (395)
T ss_dssp             CCSEEEEESSSSTTCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCS----EEEEECCSSCTTSG---GGCHHHHHH
T ss_pred             ccceEEEeccccCCCceEEEEcccCCCCCcceecChHHHHHHHHHHHhCC----EEEEECCCCccccc---hhhHHHHHH
Confidence            99999999775 34456666788899999999999999999999999999    99999997532211   124566667


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+. ....++|
T Consensus       334 a~aia~~-~a~sivG  347 (395)
T 4fey_A          334 SLAIAQS-HAFSVAG  347 (395)
T ss_dssp             HHHHHHH-CSEEEEE
T ss_pred             HHHHHhc-CCeEEEC
Confidence            7777765 2355665

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0

Probab=100.00  E-value=7.2e-36  Score=276.07  Aligned_cols=166  Identities=24%  Similarity=0.429  Sum_probs=143.8

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++++++++++|++|.
T Consensus       189 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~e~d~~~~a~~ll~~a~~~g~~i~  268 (403)
T 3q3v_A          189 IKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIY  268 (403)
T ss_dssp             TTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             HcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|++++++| .+....+.+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ...-||=.+
T Consensus       269 LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~ak----TIvWNGP~GvFE~~---~Fa~GT~~v  341 (403)
T 3q3v_A          269 LPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQ----TIWWNGPMGVFEID---KFSKGSIKM  341 (403)
T ss_dssp             CCSEEEEESSSSTTSCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHHHH
T ss_pred             CCceEEEeeccCCCCceEEEecccCCCCCEeeecChHHHHHHHHHHHhCC----EEEEECCCcccccc---chhHHHHHH
Confidence            99999999765 34456666788899999999999999999999999999    99999997532211   124566666


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+. ....++|
T Consensus       342 a~aia~~-~a~sIvG  355 (403)
T 3q3v_A          342 SHYISEG-HATSVVG  355 (403)
T ss_dssp             HHHHHHS-SSEEEEE
T ss_pred             HHHHHhc-CCEEEEC
Confidence            6667765 2345665

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*

Probab=100.00  E-value=5.8e-36  Score=276.42  Aligned_cols=167  Identities=23%  Similarity=0.428  Sum_probs=144.2

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++++++++++|++|.
T Consensus       182 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~~a~~~g~~i~  261 (394)
T 1php_A          182 LSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFY  261 (394)
T ss_dssp             HHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++++.| .+....+.+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+.+   ...-||=.+
T Consensus       262 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~ak----TivWNGPmGvFE~~---~Fa~GT~~v  334 (394)
T 1php_A          262 MPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESK----LVVWNGPMGVFEMD---AFAHGTKAI  334 (394)
T ss_dssp             CCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCS----EEEEESCSSCTTSG---GGCHHHHHH
T ss_pred             CCcchhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCC----EEEEeCCcccccCc---hHHHHHHHH
Confidence            99999999776 35556677788899999999999999999999999999    99999997542222   224466666


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+......++|
T Consensus       335 a~aia~~~~~~sivG  349 (394)
T 1php_A          335 AEALAEALDTYSVIG  349 (394)
T ss_dssp             HHHHHHCTTCEEEEC
T ss_pred             HHHHHhcCCCEEEEC
Confidence            677776422345555

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1

Probab=100.00  E-value=7.6e-36  Score=275.94  Aligned_cols=167  Identities=26%  Similarity=0.482  Sum_probs=144.4

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++++++++++|++|.
T Consensus       181 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~ka~~~g~~i~  260 (398)
T 1vpe_A          181 TYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIV  260 (398)
T ss_dssp             HHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhhHHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeec-CCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFP-SHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGL  159 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~-~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~  159 (336)
                      +|+|+++++.| .+....+.+ ...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+.+   ...-||=.
T Consensus       261 lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~ak----TivWNGPmGvFE~~---~Fa~GT~~  333 (398)
T 1vpe_A          261 LPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAK----TVVWNGPMGVFEID---DFAEGTKQ  333 (398)
T ss_dssp             CCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHHH
T ss_pred             CCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCC----EEEEECCcccccCc---hHHHHHHH
Confidence            99999999775 344566667 78899999999999999999999999999    99999997542222   22456666


Q ss_pred             HHHHHHHh--CCCCeEEE
Q 019743          160 FLLGMARK--RKDLNFLG  175 (336)
Q Consensus       160 ~~~~la~~--~p~~~v~g  175 (336)
                      ++.++|+.  .....++|
T Consensus       334 va~aia~~t~~~~~sivG  351 (398)
T 1vpe_A          334 VALAIAALTEKGAITVVG  351 (398)
T ss_dssp             HHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHhhccCCCEEEEC
Confidence            77777764  22356666

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1

Probab=100.00  E-value=1.4e-35  Score=275.52  Aligned_cols=167  Identities=22%  Similarity=0.421  Sum_probs=143.6

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCC-CCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~-~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++ ||+|++|++.++.|++|+++++++|++|
T Consensus       128 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~~g~~i  207 (416)
T 1fw8_A          128 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  207 (416)
T ss_dssp             HHSCCSSEEEEEECSCSTTTHHHHHHHHTTCSEEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HcCCCCCeEEEEcCcchhhHHHHHHHHHHhhCeeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence            468999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             eccceeeeeccC-CCCCeee-ecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~-~~~~~~v-~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++++.| .+....+ .+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ...-||=
T Consensus       208 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDIGp~T~~~~~~~i~~ak----TIvWNGPmGVFE~~---~Fa~GT~  280 (416)
T 1fw8_A          208 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAK----TIVWNGPPGVFEFE---KFAAGTK  280 (416)
T ss_dssp             ECCSEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCS----EEEEESCSSCTTSG---GGCHHHH
T ss_pred             ECCceEEEeeccCCCCCeEEecchhcCCCCCEEEecCHHHHHHHHHHHhhCC----EEEEECCCccccCc---hHHHHHH
Confidence            999999999775 3444555 6788899999999999999999999999999    99999997542212   1345666


Q ss_pred             HHHHHHHHh--CCCCeEEE
Q 019743          159 LFLLGMARK--RKDLNFLG  175 (336)
Q Consensus       159 ~~~~~la~~--~p~~~v~g  175 (336)
                      .++.++|+.  .....++|
T Consensus       281 ~va~aia~~~~~~a~sIvG  299 (416)
T 1fw8_A          281 ALLDEVVKSSAAGNTVIIG  299 (416)
T ss_dssp             HHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHhhccCCCEEEEc
Confidence            677777763  22245555

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A

Probab=100.00  E-value=2.6e-35  Score=273.89  Aligned_cols=158  Identities=22%  Similarity=0.423  Sum_probs=138.9

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHH-cCCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a-~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+| +|++||+|++|++.++.|++++++++++|++|
T Consensus       202 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~~G~~iG~Sl~e~d~~~~a~~il~~a~~~g~~i  281 (417)
T 3oz7_A          202 LENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQI  281 (417)
T ss_dssp             HTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEETTHHHHHHHHHHCCCBTTSCCCTTTHHHHHHHHHHHHHTTCEE
T ss_pred             HcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEeccHHHHHHHHHHcCCccCchhcCccChHHHHHHHHHHHHcCCEE
Confidence            46899999999999999999999999999999999999999999999 79999999999999999999999999999999


Q ss_pred             eccceeeeeccC-CCCCeeee-cCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH-HPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~-~~~~~~v~-~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|++++++| .+....+. +...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ....||=
T Consensus       282 ~LPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~ak----TIvWNGP~GvFE~~---~Fa~GT~  354 (417)
T 3oz7_A          282 FLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSK----TVIWNGPQGVFEMP---NFAKGSI  354 (417)
T ss_dssp             ECCSEEEEESSSSTTSCEEEEESSSCBCTTCEEEEECHHHHHHHHHHHHTCS----EEEEESCSBCTTSS---TTTHHHH
T ss_pred             ECCceeEEeecccCCCCeEEecccccCCCCCeeeecCHHHHHHHHHHHHhCC----EEEEECCCcccccc---chhHHHH
Confidence            999999999765 34556665 678899999999999999999999999999    99999997532111   1244665


Q ss_pred             HHHHHHHH
Q 019743          159 LFLLGMAR  166 (336)
Q Consensus       159 ~~~~~la~  166 (336)
                      .++.++|+
T Consensus       355 ~va~aia~  362 (417)
T 3oz7_A          355 ECLNLVVE  362 (417)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666665

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*

Probab=100.00  E-value=1.9e-35  Score=274.72  Aligned_cols=167  Identities=22%  Similarity=0.421  Sum_probs=142.6

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCC-CCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~-~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++ ||+|++|++.++.|++|+++++++|++|
T Consensus       198 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i  277 (415)
T 1qpg_A          198 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  277 (415)
T ss_dssp             HSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEE
Confidence            478999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             eccceeeeeccC-CCCCeee-ecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~-~~~~~~v-~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++++.| .+....+ .+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ....||=
T Consensus       278 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~ak----TIvWNGPmGvFE~~---~Fa~GT~  350 (415)
T 1qpg_A          278 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAK----TIVWNGPPGVFEFE---KFAAGTK  350 (415)
T ss_dssp             ECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHH
T ss_pred             ECCcchhhhhccCCCCCeEEecchhcCCCCCeeeccCHHHHHHHHHHHhhCC----EEEEeCCccccccc---hHHHHHH
Confidence            999999999765 2333444 6778899999999999999999999999999    99999997542222   1345666


Q ss_pred             HHHHHHHHh--CCCCeEEE
Q 019743          159 LFLLGMARK--RKDLNFLG  175 (336)
Q Consensus       159 ~~~~~la~~--~p~~~v~g  175 (336)
                      .++.++|+.  .....++|
T Consensus       351 ~va~aia~~t~~~a~sIvG  369 (415)
T 1qpg_A          351 ALLDEVVKSSAAGNTVIIG  369 (415)
T ss_dssp             HHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHhhccCCCEEEEC
Confidence            666667764  11245555

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...

Probab=100.00  E-value=2.1e-35  Score=274.37  Aligned_cols=167  Identities=22%  Similarity=0.418  Sum_probs=143.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCC-CCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~-~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++ ||+|++|++.++.|++|+++++++|++|
T Consensus       200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i  279 (416)
T 2wzb_A          200 LESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI  279 (416)
T ss_dssp             HHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHHHHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEE
Confidence            468999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             eccceeeeeccC-CCCCeee-ecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~-~~~~~~v-~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++++.| .+.+..+ .+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+-+   ...-||=
T Consensus       280 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~ak----TIvWNGPmGvFE~~---~Fa~GT~  352 (416)
T 2wzb_A          280 TLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAK----QIVWNGPVGVFEWE---AFARGTK  352 (416)
T ss_dssp             ECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCS----EEEEESCSSCTTSG---GGCHHHH
T ss_pred             ECCcchhhhhccCCCCCeEEecchhcCCCCCeeeecCHHHHHHHHHHHhhCC----EEEEECCCcccccc---hHHHHHH
Confidence            999999999776 3444555 6788899999999999999999999999999    99999997542222   1345666


Q ss_pred             HHHHHHHHh--CCCCeEEE
Q 019743          159 LFLLGMARK--RKDLNFLG  175 (336)
Q Consensus       159 ~~~~~la~~--~p~~~v~g  175 (336)
                      .++.++|+.  .....++|
T Consensus       353 ~va~aia~~t~~~a~sIvG  371 (416)
T 2wzb_A          353 ALMDEVVKATSRGCITIIG  371 (416)
T ss_dssp             HHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHhhccCCCEEEEc
Confidence            677777764  22245665

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-34  Score=264.85  Aligned_cols=161  Identities=22%  Similarity=0.315  Sum_probs=137.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|||||||+|||.+|+||+++||++|+||+|+||||+|+|++||+|++|++.++.|++++++     ++|.
T Consensus       178 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~-----~~i~  252 (387)
T 1zmr_A          178 LKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTT-----CNIP  252 (387)
T ss_dssp             HSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCGGGHHHHHHHHTT-----SCCC
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHh-----CCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999766     6899


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++++.| .+....+.+...||.+||++||||+|.+.|.+.+..++    ||+||||.+--+.+   ...-||=.+
T Consensus       253 lPvD~vva~~f~~~~~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~ak----TivWNGPmGvFE~~---~Fa~GT~~v  325 (387)
T 1zmr_A          253 VPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAK----TILWNGPVGVFEFP---NFRKGTEIV  325 (387)
T ss_dssp             CCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCS----EEEEESCSBCTTSG---GGCHHHHHH
T ss_pred             CCccceeeeccCCCCceEEeehhhCCCCCEEeecCHHHHHHHHHHHhhCC----EEEEECCcccccCc---hHHHHHHHH
Confidence            99999999766 34445666788899999999999999999999999999    99999997542222   224566666


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|+. ....++|
T Consensus       326 a~aia~~-~~~sivG  339 (387)
T 1zmr_A          326 ANAIADS-EAFSIAG  339 (387)
T ss_dssp             HHHHHHS-SSEEEEC
T ss_pred             HHHHHhc-CCeEEEC
Confidence            6777764 2345555

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}

Probab=99.98  E-value=3.1e-33  Score=259.48  Aligned_cols=160  Identities=16%  Similarity=0.178  Sum_probs=135.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhc--cceEEEehhHHHHHHHHcCCCCCCc---cccC----CchHHHHHHHHH
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASR--CDGLIFVGLMSFQIMHALGLPVPPE---LVEK----GANDAASDLIQF   72 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~--~D~~l~~G~v~~~fl~a~g~~~g~~---~~~~----~~~~~a~~l~~~   72 (336)
                      +++|+||+++|||||||+|||.+|+||+++  ||++|+||+|+||||+|+|++||+|   ++|+    +.++.|++++++
T Consensus       185 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~k~~vD~liiGGgma~tFl~A~G~~iG~S~~~l~E~~g~~d~~~~a~~ll~k  264 (410)
T 2cun_A          185 YYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDE  264 (410)
T ss_dssp             HTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCCCHHHHHHHHTTTGGGGHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHhcccCCCEEEEChHHHHHHHHHcCCCcCcchhhhhhcccchhhHHHHHHHHHh
Confidence            478999999999999999999999999999  9999999999999999999999999   9999    899999999888


Q ss_pred             HHhcCceEeccceeeeeccCCCCCeeeecCCC-----CCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCC
Q 019743           73 ARDKHITILYPKDFWCTKIHHPNQVEIFPSHG-----IPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQ  147 (336)
Q Consensus        73 ~~~~~~~i~~Pvd~~~~~~~~~~~~~v~~~~~-----ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~  147 (336)
                      +   |++|.+|+|++++++  +. ..+.+...     || +||++||||+|.+.|.+.+..++    ||+||||.+--+.
T Consensus       265 a---g~~i~lPvD~vva~~--a~-~~~~~~~~~~~~~ip-~~m~lDiGp~T~~~~~~~i~~ak----TIvWNGPmGvFE~  333 (410)
T 2cun_A          265 F---YPYIRTPVDFAVDYK--GE-RVEIDLLSENRGLLH-QYQIMDIGKRTAEKYREILMKAR----IIVANGPMGVFER  333 (410)
T ss_dssp             H---GGGEECCSEEEEEET--TE-EEEEESSSGGGGGGG-TSCEEEECHHHHHHHHHHHHTCS----EEEEESCSSCTTS
T ss_pred             c---cCeEeCCceeEEecC--CC-eEEEecccccccCCC-CCeeeeeCHHHHHHHHHHHhhCC----EEEEECCcccccC
Confidence            6   789999999999966  44 45556777     99 99999999999999999999999    9999999753221


Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEE
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGL  176 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~gi  176 (336)
                      +   ....||=.++.++|+. ....++|=
T Consensus       334 ~---~Fa~GT~~va~aia~~-~~~sivGG  358 (410)
T 2cun_A          334 E---EFAIGTVEVFKAIADS-PAFSVLGG  358 (410)
T ss_dssp             G---GGCHHHHHHHHHHHHS-SSEEEEEC
T ss_pred             c---hHHHHHHHHHHHHHhc-CCeEEECC
Confidence            2   2244555666666664 23456553

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.96  E-value=2.7e-29  Score=220.26  Aligned_cols=184  Identities=18%  Similarity=0.392  Sum_probs=158.9

Q ss_pred             ccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCC
Q 019743          137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY  216 (336)
Q Consensus       137 ~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnp  216 (336)
                      .|...|+. ++++|||||||+|.+++.+|+.+|+.+++|+|+|+.|++.|++|+..+++.|++++++|+.+. +..+  +
T Consensus        30 ~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l-~~~~--~  105 (213)
T 2fca_A           30 KWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL-TDVF--E  105 (213)
T ss_dssp             CHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH-HHHC--C
T ss_pred             CHHHHcCC-CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc--C
Confidence            44444543 468999999999999999999999999999999999999999999999999999999999873 3334  5


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecccccccc
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKT  296 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~  296 (336)
                      +.++|.+++++++||++..|+.++++++.+++++.++|+|||.+++.+++..+.+++.+.+.+.||.......|.+    
T Consensus       106 ~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~~d~~----  181 (213)
T 2fca_A          106 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLH----  181 (213)
T ss_dssp             TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG----
T ss_pred             cCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccccccc----
Confidence            6678999999999999988888888889999999999999999999999989999999999999998777766633    


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          297 NQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       297 ~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                           ....+..+.|+||+++.++|.+||++.|+|..
T Consensus       182 -----~~~~~~~~~t~~E~~~~~~G~~i~~~~~~~~~  213 (213)
T 2fca_A          182 -----NSNLEGNIMTEYEEKFSALGQPIYRAEVEWRT  213 (213)
T ss_dssp             -----GSSCTTCCCCTTGGGSSSSSCCCEEEEEECCC
T ss_pred             -----cccCCCCCCcHHHHHHHHCCCCeEEEEEEECC
Confidence                 11245567899999999999999999999863

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.96  E-value=2.7e-29  Score=221.08  Aligned_cols=186  Identities=23%  Similarity=0.351  Sum_probs=160.3

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      .+.|...|++ ++++|||||||+|.+++.+|+..|+.+|+|+|+|+.+++.|++++..++++|++++++|+.+.++..+ 
T Consensus        24 ~~d~~~~f~~-~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-  101 (218)
T 3dxy_A           24 MLDFPALFGR-EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-  101 (218)
T ss_dssp             CCCHHHHHSS-CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-
T ss_pred             CCCHHHHcCC-CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-
Confidence            4566666665 47899999999999999999999999999999999999999999999999999999999988656545 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccceeeeccccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECD  293 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~d~~~  293 (336)
                       |+.++|.++++||+||++..+++.+++.+.+++++.++|||||.+++.+++..+++++.+.+.+.+ |...... +   
T Consensus       102 -~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~~~~-~---  176 (218)
T 3dxy_A          102 -PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSES-N---  176 (218)
T ss_dssp             -CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEECCTT-S---
T ss_pred             -CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccccCc-C---
Confidence             678899999999999999999888999999999999999999999999999999999999887653 5433222 2   


Q ss_pred             cccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          294 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       294 ~~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                            .|.......+.|+||+++.+.|+.+|.+.|+|++
T Consensus       177 ------~~~~~~~~~~~t~fE~k~~~~G~~~~~~~~~~~~  210 (218)
T 3dxy_A          177 ------DYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK  210 (218)
T ss_dssp             ------SCBCCCTTSCCCTTCCTTCTTCCSCEEEEEEECC
T ss_pred             ------ccCCCCCCCCCcHHHHHHHHCCCCeEEEEEEEcc
Confidence                  2333344578899999999999999999999985

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.96  E-value=1.8e-27  Score=208.28  Aligned_cols=181  Identities=18%  Similarity=0.393  Sum_probs=155.8

Q ss_pred             cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCC
Q 019743          138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP  217 (336)
Q Consensus       138 ~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp  217 (336)
                      |...|+. ++.+|||||||+|.+++.+|+..|+.+++|+|+|+.+++.|++|+..+++.|+.++++|+.+. ...+  ++
T Consensus        34 ~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~--~~  109 (214)
T 1yzh_A           34 WRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYF--ED  109 (214)
T ss_dssp             HHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTS--CT
T ss_pred             HHHHcCC-CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc--CC
Confidence            3333433 367899999999999999999999999999999999999999999999988999999998763 2223  45


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccC
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN  297 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~  297 (336)
                      ..+|.+++++|+||++.+|+.+++.++.+++.+.++|+|||.+++.+++.++.+.+.+.+.+.||.......|.+     
T Consensus       110 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~-----  184 (214)
T 1yzh_A          110 GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLH-----  184 (214)
T ss_dssp             TCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG-----
T ss_pred             CCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecccccc-----
Confidence            678999999999999988888888899999999999999999999999888899999999999999887777743     


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 019743          298 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK  331 (336)
Q Consensus       298 ~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~  331 (336)
                          ....+..+.|+||+++.+.|++||++.|++
T Consensus       185 ----~~~~~~~~~t~~e~~~~~~g~~i~~~~~~~  214 (214)
T 1yzh_A          185 ----ASDFEGNVMTEYEQKFSNKGQVIYRVEAEF  214 (214)
T ss_dssp             ----GSCCCCCCCCHHHHHTGGGCCCCEEEEEEC
T ss_pred             ----ccCCCCCCCcHHHHHHHHCCCCeEEEEEEC
Confidence                112455778999999999999999999874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.95  E-value=6.2e-27  Score=208.27  Aligned_cols=180  Identities=23%  Similarity=0.350  Sum_probs=140.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------hCCCcEEEEecchhHHHHhhhcCCCCe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------SGITNGYFIATNATSTFRSIVASYPGK  219 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------~~~~nv~~~~~d~~~~~d~ivsnpp~~  219 (336)
                      +..+|||||||+|.+++.+|+.+|+.+++|+|+|+.|++.|+++++.      .+..|++++++|+.+.++..+  ++.+
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~--~~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC--CTTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC--CCcC
Confidence            35789999999999999999999999999999999999999998764      356799999999976445444  5778


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCC
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG  299 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~  299 (336)
                      +|.+++.+++||++.+|+++|++++.+++++.++|+|||.+++.+++..+.+++.+.+.+++... ....+     .+..
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~-~~~~~-----~~~~  197 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE-RVPLE-----DLSE  197 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE-EECGG-----GGTT
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc-ccCch-----hccc
Confidence            99999999999999999888999999999999999999999999999999999999999887322 22222     1122


Q ss_pred             CCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 019743          300 GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  334 (336)
Q Consensus       300 ~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~  334 (336)
                      .|.. ......|+||+++.++|.++|++.|+|+..
T Consensus       198 ~~~~-~~~~~~t~~e~k~~~~G~~~~~~~f~r~~~  231 (235)
T 3ckk_A          198 DPVV-GHLGTSTEEGKKVLRNGGKNFPAIFRRIQD  231 (235)
T ss_dssp             CTTG-GGTTTSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred             Cccc-cCCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence            3422 223467999999999999999999999864

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.92  E-value=7.3e-25  Score=195.99  Aligned_cols=181  Identities=16%  Similarity=0.233  Sum_probs=142.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--------CCCcEEEEecchhHHHHhhhcCCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYP  217 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--------~~~nv~~~~~d~~~~~d~ivsnpp  217 (336)
                      ++.+|||||||+|.+++.+|+..|+.+++|+|+|+.+++.|++|++.+        ++.|+.++++|+.+.++..+  ++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--~~  126 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--EK  126 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS--CT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc--cc
Confidence            357899999999999999999999999999999999999999999877        77899999999976444333  46


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccC
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN  297 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~  297 (336)
                      ..++.+++.+|+||++.+++..+..++.+++++.++|+|||.+++.++...+.+++.+.+...++. ..+..+.     +
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~-~~~~~~~-----~  200 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLF-ERLSKEW-----E  200 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTTE-EECCHHH-----H
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcCe-EecCccc-----c
Confidence            778999999999999988888888899999999999999999999999999999999999888752 2222110     0


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 019743          298 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV  335 (336)
Q Consensus       298 ~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~~  335 (336)
                      ...|. .....+.|+||.++.+.|.++|.+.|+|+...
T Consensus       201 ~~d~~-~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~~~  237 (246)
T 2vdv_E          201 ENDEC-VKIMRNATEEGKKVERKKGDKFVACFTRLPTP  237 (246)
T ss_dssp             HTCHH-HHHHHHSSHHHHHHHHTTCCCEEEEEEECCCC
T ss_pred             ccCcc-cccCCCCCHHHHHHHHCCCCeEEEEEEECCCc
Confidence            00010 01112459999999999999999999998653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.89  E-value=2.6e-23  Score=189.02  Aligned_cols=204  Identities=17%  Similarity=0.161  Sum_probs=152.9

Q ss_pred             cCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccc
Q 019743           59 EKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDID  137 (336)
Q Consensus        59 ~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~  137 (336)
                      .++..+..++++++.. .+    .|++|+.|.. |+|.++.+.+.+.+|        +|+|+..++.+++...       
T Consensus        48 ~~~~~~~~~~~~~~~~-~~----~p~~~i~g~~~f~~~~~~~~~~~~ip--------r~~te~l~~~~l~~~~-------  107 (276)
T 2b3t_A           48 TDEQCQQLDALLTRRR-DG----EPIAHLTGVREFWSLPLFVSPATLIP--------RPDTECLVEQALARLP-------  107 (276)
T ss_dssp             CHHHHHHHHHHHHHHH-TT----CCHHHHSCEEEETTEEEECCTTSCCC--------CTTHHHHHHHHHHHSC-------
T ss_pred             CHHHHHHHHHHHHHHH-cC----CChhHeeeeeEECCceEEeCCCCccc--------CchHHHHHHHHHHhcc-------
Confidence            3345566667766643 34    4999999987 999999998888888        5999999888876431       


Q ss_pred             cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhh
Q 019743          138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSI  212 (336)
Q Consensus       138 ~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~i  212 (336)
                             .+..+|||+|||+|++++.+++..|..+++|+|+|+.+++.|++|+..++++++.++++|+.+.     ||.+
T Consensus       108 -------~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~I  180 (276)
T 2b3t_A          108 -------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMI  180 (276)
T ss_dssp             -------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEE
T ss_pred             -------cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEE
Confidence                   1256899999999999999999999999999999999999999999999988999999998652     5666


Q ss_pred             hcCCCCeEEEE-Ee----eCCCCCCCcc-hhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          213 VASYPGKLILV-SI----QCPNPDFNRP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       213 vsnpp~~~d~i-~~----~~~dp~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      ++||||..... .+    ..-+|..... .......++.+++.+.++|+|||+++++++. .+.+.+.+.+.+.||..+.
T Consensus       181 v~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~Gf~~v~  259 (276)
T 2b3t_A          181 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVRQAFILAGYHDVE  259 (276)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHHHHHHHTTCTTCC
T ss_pred             EECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHHHHHHHCCCcEEE
Confidence            77777632100 00    0001110000 0001124689999999999999999998875 3477888999999998777


Q ss_pred             eecc
Q 019743          287 LVQD  290 (336)
Q Consensus       287 ~~~d  290 (336)
                      +..|
T Consensus       260 ~~~d  263 (276)
T 2b3t_A          260 TCRD  263 (276)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7666

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.88  E-value=3e-23  Score=189.50  Aligned_cols=185  Identities=14%  Similarity=0.137  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccccccc
Q 019743           64 DAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAY  142 (336)
Q Consensus        64 ~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~  142 (336)
                      +...+++++. ..+    .|++|++|.. |+|.++.+.+.+.+|        +|+|+.+++.++.....           
T Consensus        66 ~~~~~~~~~r-~~~----~p~~yi~g~~~f~~~~~~v~~~~lip--------r~~te~lv~~~l~~~~~-----------  121 (284)
T 1nv8_A           66 KRILELVEKR-ASG----YPLHYILGEKEFMGLSFLVEEGVFVP--------RPETEELVELALELIRK-----------  121 (284)
T ss_dssp             HHHHHHHHHH-HTT----CCHHHHHTEEEETTEEEECCTTSCCC--------CTTHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHH-HCC----CCCeEEeeeeEECCeEEEeCCCceec--------ChhHHHHHHHHHHHhcc-----------
Confidence            4556666663 344    4999999987 999999999899888        59999998887764320           


Q ss_pred             CCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH----HH---Hhhhc
Q 019743          143 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS----TF---RSIVA  214 (336)
Q Consensus       143 ~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~----~~---d~ivs  214 (336)
                        ....+|||+|||||++++.+++. |..+++|+|+|+.+++.|++|++.+++.+ ++|+++|+.+    .|   |.|++
T Consensus       122 --~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivs  198 (284)
T 1nv8_A          122 --YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS  198 (284)
T ss_dssp             --HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred             --cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEE
Confidence              02468999999999999999999 99999999999999999999999999875 9999999975    47   99999


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcc----hHHHHHHHH-hcCcCCcEEEEEeCcHHHHHHHHHHHHHc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMV----QRSLVEAVS-DLLVHDGKVFLQSDIEEVMLRMKQQFLEY  280 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~----~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  280 (336)
                      ||||.....  . ..+... ..+..+++    -..+++.+. +.|+|||+++++++. .+.+.+.+++.+.
T Consensus       199 nPPyi~~~~--~-l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~-~q~~~v~~~~~~~  264 (284)
T 1nv8_A          199 NPPYVKSSA--H-LPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIVSDT  264 (284)
T ss_dssp             CCCCBCGGG--S-CTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTSTTC
T ss_pred             cCCCCCccc--c-cChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc-hHHHHHHHHHHhC
Confidence            999963211  1 111111 11111111    127889999 999999999999986 5577777776654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.71  E-value=3.5e-17  Score=143.95  Aligned_cols=167  Identities=17%  Similarity=0.117  Sum_probs=113.4

Q ss_pred             CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecc-ccHHHHHHHHhCCC
Q 019743           92 HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSG-NGLFLLGMARKRKD  170 (336)
Q Consensus        92 ~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcG-sG~~~~~la~~~p~  170 (336)
                      |+|.++.+.+...+|        +|+++.++.   ....              .++.+|||+||| +|.+++.+++.. .
T Consensus        26 ~~~~~~~~~~~~~~p--------~~~~~~l~~---~~~~--------------~~~~~vLDlG~G~~G~~~~~la~~~-~   79 (230)
T 3evz_A           26 LFGLDIEYHPKGLVT--------TPISRYIFL---KTFL--------------RGGEVALEIGTGHTAMMALMAEKFF-N   79 (230)
T ss_dssp             HHCCCCCCCTTSCCC--------CHHHHHHHH---HTTC--------------CSSCEEEEECCTTTCHHHHHHHHHH-C
T ss_pred             hcCCceecCCCeEeC--------CCchhhhHh---Hhhc--------------CCCCEEEEcCCCHHHHHHHHHHHhc-C
Confidence            456666666666667        477755421   1111              135789999999 999999999986 6


Q ss_pred             CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-------HHHhhhcCCCCeEEEEEeeCCCCCCCc-chhhhhcc
Q 019743          171 LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-------TFRSIVASYPGKLILVSIQCPNPDFNR-PEHRWRMV  242 (336)
Q Consensus       171 ~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-------~~d~ivsnpp~~~d~i~~~~~dp~~~~-~~~~~~l~  242 (336)
                      .+++|+|+|+.+++.|++|+..++. +++++++|+..       .||.+++||||........ ..+.... ........
T Consensus        80 ~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (230)
T 3evz_A           80 CKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRV-LTEREAIGGGKYGEEF  157 (230)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECCCCC----------------CCSSSCHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccc-cChhhhhccCccchHH
Confidence            8999999999999999999999888 89999999521       3666777777632110000 0000000 00001123


Q ss_pred             hHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHHHHcCCccee
Q 019743          243 QRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       243 ~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l~~~g~~~~~  286 (336)
                      +..+++++.++|+|||++++.+.. ....+.+.+.+.+.||....
T Consensus       158 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~  202 (230)
T 3evz_A          158 SVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKD  202 (230)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEE
Confidence            478999999999999999996543 35577888899999996543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.71  E-value=8.1e-17  Score=146.05  Aligned_cols=212  Identities=10%  Similarity=0.053  Sum_probs=146.5

Q ss_pred             ccceeeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCC-CCc----ccccccccCCCCCCeEEEEecc
Q 019743           82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKA-FPF----DIDWSAAYHDPAQPLVVDIGSG  156 (336)
Q Consensus        82 ~Pvd~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~-~~~----~i~~~g~~~~~~~~~vLDiGcG  156 (336)
                      +|.++++|.. +|..+.+.      .+...+.++|+++.....+...... ++.    .+.+..   ...+.+|||+|||
T Consensus        53 ~~~~~i~g~~-~g~~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~VLDiG~G  122 (277)
T 1o54_A           53 IDLNEVFEKG-PGEIIRTS------AGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLD---VKEGDRIIDTGVG  122 (277)
T ss_dssp             EEHHHHTTSC-TTCEEECT------TCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTT---CCTTCEEEEECCT
T ss_pred             EEHHHhcCCC-CCcEEEEc------CCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhC---CCCCCEEEEECCc
Confidence            4677777643 56655443      2333455678888766543322110 000    011111   1235689999999


Q ss_pred             ccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCc
Q 019743          157 NGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR  234 (336)
Q Consensus       157 sG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~  234 (336)
                      +|.+++.+++. .|..+++++|+|+.+++.|++|++.+++ .++.++++|+.+.    +  ++..+|.++++.|+++   
T Consensus       123 ~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~V~~~~~~~~---  193 (277)
T 1o54_A          123 SGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDALFLDVPDPW---  193 (277)
T ss_dssp             TSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEEEECCSCGG---
T ss_pred             CCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc----c--cCCccCEEEECCcCHH---
Confidence            99999999998 6789999999999999999999998887 6899999998653    2  3456888888766664   


Q ss_pred             chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCCCCCCCHHH
Q 019743          235 PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE  314 (336)
Q Consensus       235 ~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~t~~e  314 (336)
                                .+++.+.+.|+|||.+++.+....+...+.+.+.+.||..++...+..      ..|..... .  ...+
T Consensus       194 ----------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~~~~~-~--~rp~  254 (277)
T 1o54_A          194 ----------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLF------RPYKPVPE-R--LRPV  254 (277)
T ss_dssp             ----------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCC------CCEECCTT-S--CEEC
T ss_pred             ----------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEee------eeeEeccc-e--eCCC
Confidence                      788999999999999999887766778888889999998877766522      22322211 1  1111


Q ss_pred             HHHHHcCCCeEEEEEEeCC
Q 019743          315 QHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       315 ~~~~~~G~~i~~~~~~~~~  333 (336)
                        ....|.+.|.+.+||..
T Consensus       255 --~~~~~~~~~li~ark~~  271 (277)
T 1o54_A          255 --DRMVAHTAYMIFATKVC  271 (277)
T ss_dssp             --SCCCCCSCEEEEEEECS
T ss_pred             --ccccCCCeEEEEEEecC
Confidence              12467788888888874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.70  E-value=2.3e-17  Score=142.82  Aligned_cols=170  Identities=18%  Similarity=0.172  Sum_probs=103.1

Q ss_pred             eeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEe
Q 019743           98 EIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE  177 (336)
Q Consensus        98 ~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giD  177 (336)
                      .+.+.+.+|        +|+|+..++.+++....            ..+..+|||+|||+|.++..+++..|+.+++|+|
T Consensus         2 ~~~~~~~~p--------~~~~~~~~~~~~~~l~~------------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD   61 (215)
T 4dzr_A            2 EVGPDCLIP--------RPDTEVLVEEAIRFLKR------------MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVD   61 (215)
T ss_dssp             BCSGGGGSC--------CHHHHHHHHHHHHHHTT------------CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEE
T ss_pred             cCCCCccCC--------CccHHHHHHHHHHHhhh------------cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEE
Confidence            344556666        69999888888765431            0135789999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHhCCCcEEEEecchhH----------HHHhhhcCCCCeEEEEEeeCCCCCCCcch--------hhh
Q 019743          178 VNGKLVTHCRDSLQLSGITNGYFIATNATS----------TFRSIVASYPGKLILVSIQCPNPDFNRPE--------HRW  239 (336)
Q Consensus       178 is~~~l~~a~~n~~~~~~~nv~~~~~d~~~----------~~d~ivsnpp~~~d~i~~~~~dp~~~~~~--------~~~  239 (336)
                      +|+.+++.|++|+..++. +++++++|+.+          .||.+++||||.........+. ......        ...
T Consensus        62 ~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  139 (215)
T 4dzr_A           62 LSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEP-SVRDYEPRLALDGGEDG  139 (215)
T ss_dssp             CC--------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC-------------------------CT
T ss_pred             CCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccCh-hhhccCccccccCCCcH
Confidence            999999999999988877 89999999864          2666777777742211111110 000000        011


Q ss_pred             hcchHHHHHHHHhcCcCCcE-EEEEeCcHHHHHHHHHHHH--HcCCcceeeecc
Q 019743          240 RMVQRSLVEAVSDLLVHDGK-VFLQSDIEEVMLRMKQQFL--EYGKGKLVLVQD  290 (336)
Q Consensus       240 ~l~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~l~--~~g~~~~~~~~d  290 (336)
                      ..++..+++++.++|+|||+ +++.+.. ...+.+.+.+.  +.||..+.+..|
T Consensus       140 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~l~~~~~gf~~~~~~~~  192 (215)
T 4dzr_A          140 LQFYRRMAALPPYVLARGRAGVFLEVGH-NQADEVARLFAPWRERGFRVRKVKD  192 (215)
T ss_dssp             THHHHHHHTCCGGGBCSSSEEEEEECTT-SCHHHHHHHTGGGGGGTEECCEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEEECC-ccHHHHHHHHHHhhcCCceEEEEEe
Confidence            12347899999999999999 7777664 45777888888  888877766655

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.69  E-value=1e-16  Score=143.34  Aligned_cols=182  Identities=11%  Similarity=0.079  Sum_probs=119.5

Q ss_pred             CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCC
Q 019743           92 HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDL  171 (336)
Q Consensus        92 ~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~  171 (336)
                      |+|.++.+.+...+|+    ..-+|+++..+..++.....         ..  .+..+|||+|||+|.+++.++++.|+.
T Consensus        26 ~~~~~~~~~~~~~~p~----~~~r~~~~~~~~~~~~~~~~---------~~--~~~~~vLDlG~G~G~~~~~la~~~~~~   90 (254)
T 2h00_A           26 DFGLSIDIPLERLIPT----VPLRLNYIHWVEDLIGHQDS---------DK--STLRRGIDIGTGASCIYPLLGATLNGW   90 (254)
T ss_dssp             HHCCCCCCCTTSCCCC----HHHHHHHHHHHHHHHCCCCG---------GG--CCCCEEEEESCTTTTHHHHHHHHHHCC
T ss_pred             cCCeeeecCccccCCC----ccchHHHHHHHHHHHhhccc---------cC--CCCCEEEEeCCChhHHHHHHHHhCCCC
Confidence            3455666666666762    11126666666666542210         00  125689999999999999999988889


Q ss_pred             eEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH------------HHHhhhcCCCCeEEE---EEeeC-----CCC
Q 019743          172 NFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS------------TFRSIVASYPGKLIL---VSIQC-----PNP  230 (336)
Q Consensus       172 ~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~------------~~d~ivsnpp~~~d~---i~~~~-----~dp  230 (336)
                      +++|+|+|+.|++.|++|++.+++++ ++++++|+.+            .||.+++||||....   ..+..     ..|
T Consensus        91 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~  170 (254)
T 2h00_A           91 YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPP  170 (254)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCC
Confidence            99999999999999999999988865 9999988421            378888888885321   00000     011


Q ss_pred             CCCcch-------h-hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          231 DFNRPE-------H-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       231 ~~~~~~-------~-~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ......       + ....++..++....+.|+++|+++++.+.....+.+.+++++.||..+++.
T Consensus       171 ~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~  236 (254)
T 2h00_A          171 SSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYT  236 (254)
T ss_dssp             ------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEE
Confidence            100000       0 011235667777778899999888877665544778888899999876543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.69  E-value=1.6e-16  Score=142.14  Aligned_cols=127  Identities=17%  Similarity=0.152  Sum_probs=99.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.+++.+|..+|+.+|+|+|+|+.+++.|++|++.++++|++++++|+.+....  ...+..+|.++..
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~--~~~~~~fD~I~s~  158 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE--AGHREAYARAVAR  158 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS--TTTTTCEEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc--cccCCCceEEEEC
Confidence            57899999999999999999999999999999999999999999999998999999998764110  0013568887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc--HHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...            ....+++.+.++|+|||++++..+.  .+....+.+.+...|+....+
T Consensus       159 a~~------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          159 AVA------------PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV  209 (249)
T ss_dssp             SSC------------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE
T ss_pred             CcC------------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE
Confidence            211            1258999999999999999886642  333445667777888876543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.68  E-value=9e-17  Score=144.38  Aligned_cols=138  Identities=17%  Similarity=0.241  Sum_probs=98.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH--------HHHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS--------TFRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~--------~~d~ivsnpp  217 (336)
                      +.+|||+|||+|.+++.+|++.+. +++|+|+++.+++.|++|+..+++. +++++++|+.+        .||.|++|||
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            578999999999999999998754 9999999999999999999999886 69999999865        2677777777


Q ss_pred             CeEE-EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          218 GKLI-LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       218 ~~~d-~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      |... ......+++.....++........+++.+.++|+|||++++..... ....+.+.+.+++|....
T Consensus       129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE-RLLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT-THHHHHHHHHHTTEEEEE
T ss_pred             CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH-HHHHHHHHHHHCCCceEE
Confidence            7422 1111122222222223333445789999999999999999977654 456677888888876543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=5.4e-17  Score=146.10  Aligned_cols=135  Identities=15%  Similarity=0.164  Sum_probs=95.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH---hCCC-cEEEEecchhHH-------------H
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL---SGIT-NGYFIATNATST-------------F  209 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~---~~~~-nv~~~~~d~~~~-------------~  209 (336)
                      ..+|||+|||+|.+++.++++.|..+++|+|+++.+++.|++|+..   +++. ++.++++|+.+.             |
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f  116 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF  116 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence            5689999999999999999999999999999999999999999987   7775 599999998542             5


Q ss_pred             HhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          210 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       210 d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      |.|++||||.... ....++......++........+++.+.++|+|||++++..... ....+.+.+.+. |..
T Consensus       117 D~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~-~~~  188 (260)
T 2ozv_A          117 HHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-SVAEIIAACGSR-FGG  188 (260)
T ss_dssp             EEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-GHHHHHHHHTTT-EEE
T ss_pred             CEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-HHHHHHHHHHhc-CCc
Confidence            7777777774321 11112222111222223346799999999999999999988764 355666666654 543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.67  E-value=1.9e-15  Score=130.50  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+++..|..+++|+|+|+.+++.|++|++.++..++.++++|+.+.+.     +...+|.++..
T Consensus        41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~~  115 (204)
T 3e05_A           41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-----DLPDPDRVFIG  115 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-----TSCCCSEEEES
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-----cCCCCCEEEEC
Confidence            5789999999999999999999999999999999999999999999998899999999865321     11335766655


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  282 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  282 (336)
                      .+..           ....+++++.+.|+|||++++........+.+.+.+.+.||
T Consensus       116 ~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          116 GSGG-----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             CCTT-----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             CCCc-----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            3221           24589999999999999999987666778888999999998

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.66  E-value=6.8e-16  Score=139.90  Aligned_cols=159  Identities=13%  Similarity=0.037  Sum_probs=122.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHh-CCCcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~-~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ++.+|||+|||+|.++..+++. .|..+++|+|+|+.+++.|++|++.+ +..|+.+.++|+.+.    +  ++..+|.+
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~--~~~~fD~V  183 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV  183 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc----C--cCCCccEE
Confidence            3579999999999999999998 78899999999999999999999888 878899999998652    2  34568888


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCC
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  303 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~  303 (336)
                      ++..|+++             .+++++.+.|+|||++++.+......+.+.+.+.+.||...+.....      ...|..
T Consensus       184 i~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~------~~~~~~  244 (275)
T 1yb2_A          184 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELM------KRRILV  244 (275)
T ss_dssp             EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEE------ECCCCC
T ss_pred             EEcCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEEe------cceeEe
Confidence            87666554             78899999999999999988776677788888888999877665431      122432


Q ss_pred             CCCCCCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 019743          304 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  334 (336)
Q Consensus       304 ~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~  334 (336)
                      ... ......    ...|.+.|.+.+||..+
T Consensus       245 ~~~-~~rp~~----~~~~~~~~li~ark~~~  270 (275)
T 1yb2_A          245 REG-ATRPAS----DDLTHTAFITFAIKKSG  270 (275)
T ss_dssp             CTT-CCCCGG----GGSCEEEEEEEEEECCS
T ss_pred             cCC-cccccc----ccCCCcEEEEEEEehhc
Confidence            221 111111    25677888888888764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.66  E-value=3.3e-16  Score=141.02  Aligned_cols=163  Identities=14%  Similarity=0.156  Sum_probs=105.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ++.+|||||||+|.+++.++++.  |+++|+|+|+|+.|++.|++++...+. .+++++++|+.+.       |...+|.
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-------~~~~~d~  142 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-------AIENASM  142 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-------CCCSEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-------ccccccc
Confidence            36799999999999999999974  678999999999999999999987765 4799999998653       2233566


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe----CcHHHHHHHH----HHHHHcCCcceeeecccccc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS----DIEEVMLRMK----QQFLEYGKGKLVLVQDECDT  294 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~----~~~~~~~~~~----~~l~~~g~~~~~~~~d~~~~  294 (336)
                      ++..+.-.+..      ......++++++++|||||.+++..    ........+.    ......||...++.....  
T Consensus       143 v~~~~~l~~~~------~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~--  214 (261)
T 4gek_A          143 VVLNFTLQFLE------PSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRS--  214 (261)
T ss_dssp             EEEESCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHH--
T ss_pred             ceeeeeeeecC------chhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh--
Confidence            65554322211      0122478999999999999998832    1111112221    122344555432221100  


Q ss_pred             ccCCCCCCCCCCC--CCCCHHHHHHHHcCCCeEEEEEE
Q 019743          295 KTNQGGWLGENSF--GVRSDWEQHVIDRGAPMYRLMLS  330 (336)
Q Consensus       295 ~~~~~~~~~~~~~--~~~t~~e~~~~~~G~~i~~~~~~  330 (336)
                             ..++..  ....++...+.+.|+....+.|+
T Consensus       215 -------~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq  245 (261)
T 4gek_A          215 -------MLENVMLTDSVETHKARLHKAGFEHSELWFQ  245 (261)
T ss_dssp             -------HHHHHCCCBCHHHHHHHHHHHTCSEEEEEEE
T ss_pred             -------hhcccccCCCHHHHHHHHHHcCCCeEEEEEE
Confidence                   001111  22346778899999987665554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.63  E-value=2.2e-15  Score=134.53  Aligned_cols=124  Identities=15%  Similarity=0.243  Sum_probs=107.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+.+|||+|||+|.++..+++. .|..+++|+|+|+.+++.|++|++.+++.+ +.++++|+.+.    +  ++..+|.+
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~v  166 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG----I--EEENVDHV  166 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC----C--CCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc----c--CCCCcCEE
Confidence            3578999999999999999999 889999999999999999999999999876 99999998753    2  45668988


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC--Ccceeee
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG--KGKLVLV  288 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g--~~~~~~~  288 (336)
                      +++.++++             .+++++.+.|+|||.+++.....++...+.+.+.+.|  |...+..
T Consensus       167 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          167 ILDLPQPE-------------RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             EECSSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             EECCCCHH-------------HHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEE
Confidence            88766664             7889999999999999998777777888899999999  8876654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.63  E-value=1.2e-14  Score=125.96  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=99.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+|+.  ..+++|+|+|+.+++.|++|++.+++. ++.++++|+.+.+..     ...+|.+++
T Consensus        56 ~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-----~~~~D~v~~  128 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-----LPLPEAVFI  128 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-----SCCCSEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-----CCCCCEEEE
Confidence            578999999999999999988  789999999999999999999999988 899999998763221     123576665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...            ...+ +++++.+.|+|||++++.+...+....+.+.+.+.|+....+
T Consensus       129 ~~~------------~~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i  177 (204)
T 3njr_A          129 GGG------------GSQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI  177 (204)
T ss_dssp             CSC------------CCHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCc------------ccHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence            421            1224 899999999999999998877777888889999999776544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.63  E-value=4.5e-16  Score=137.10  Aligned_cols=134  Identities=16%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecC-hHHHHHH---HHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVN-GKLVTHC---RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis-~~~l~~a---~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||||||+|.++..+|++.|+.+|+|+|+| +.|++.|   ++++.+.++.|+.++++|+... +.-+   ...++.
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~---~d~v~~  100 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFEL---KNIADS  100 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGG---TTCEEE
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhc---cCeEEE
Confidence            568999999999999999998899999999999 6676666   8888778888999999998764 2111   245777


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC------------------cHHHHH--HHHHHHHHcCC
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD------------------IEEVML--RMKQQFLEYGK  282 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~------------------~~~~~~--~~~~~l~~~g~  282 (336)
                      ++++++.+.   .+...+.....++++++++|||||++++.+.                  ...+..  ++.+.+.+.||
T Consensus       101 i~~~~~~~~---~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf  177 (225)
T 3p2e_A          101 ISILFPWGT---LLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGF  177 (225)
T ss_dssp             EEEESCCHH---HHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTC
T ss_pred             EEEeCCCcH---HhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCC
Confidence            788877654   1222233456899999999999999998221                  011111  26777888898


Q ss_pred             cceee
Q 019743          283 GKLVL  287 (336)
Q Consensus       283 ~~~~~  287 (336)
                      .....
T Consensus       178 ~v~~~  182 (225)
T 3p2e_A          178 RIDDV  182 (225)
T ss_dssp             EEEEE
T ss_pred             Ceeee
Confidence            76543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.62  E-value=3.9e-15  Score=125.20  Aligned_cols=124  Identities=14%  Similarity=0.122  Sum_probs=100.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.+|..+++|+|+|+.+++.|++++..++.. ++ ++++|+.+.++    .++..+|.+++
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~----~~~~~~D~i~~  100 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD----DVPDNPDVIFI  100 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG----GCCSCCSEEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh----ccCCCCCEEEE
Confidence            56899999999999999999999999999999999999999999988887 88 88898865322    22256787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      .+...+            ..+++++.+.|+|||++++.....+....+.+.+.+.++.....
T Consensus       101 ~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (178)
T 3hm2_A          101 GGGLTA------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSF  150 (178)
T ss_dssp             CC-TTC------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEE
T ss_pred             CCcccH------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEE
Confidence            543322            37899999999999999997766666778888888888765543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.62  E-value=7.6e-15  Score=130.22  Aligned_cols=127  Identities=16%  Similarity=0.102  Sum_probs=99.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.+++.+|...|+.+|+|+|+|+.|++.|+++++.++++|++++++|+.+. ..- ...+..+|.++..
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~~~~fD~V~~~  148 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETF-GQR-KDVRESYDIVTAR  148 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHH-TTC-TTTTTCEEEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHh-ccc-ccccCCccEEEEe
Confidence            56899999999999999999888999999999999999999999999988999999998663 100 0013567887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc--HHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...            ....+++.+.++|+|||.+++..+.  ......+.+.+...||.....
T Consensus       149 ~~~------------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          149 AVA------------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             CCS------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccC------------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence            311            2458999999999999999986543  223345667788888875443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.62  E-value=2.8e-15  Score=131.44  Aligned_cols=123  Identities=11%  Similarity=0.124  Sum_probs=100.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCC-eEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPG-KLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~-~~d~i~  224 (336)
                      +.+|+|||||||.+++.+|+..|..+|+|+|+++.+++.|++|++.++++ ++++.++|+++.+      ++. .+|.++
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------~~~~~~D~Iv   89 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------EETDQVSVIT   89 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc------ccCcCCCEEE
Confidence            56899999999999999999999999999999999999999999999987 5999999987632      222 356665


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      +..          .......++++.+.+.|+++|++++...  .....+++.|.++||.....
T Consensus        90 iaG----------~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           90 IAG----------MGGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             EEE----------ECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred             EcC----------CChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCCCEEEEE
Confidence            431          0112356899999999999999999665  34778999999999987643

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.60  E-value=3.7e-15  Score=125.35  Aligned_cols=141  Identities=12%  Similarity=0.193  Sum_probs=99.5

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      +.++|+|+.+++. +....              .++.+|||+|||+|.++..+++..   +++|+|+|+.|++.      
T Consensus         4 ~~P~~~~~~l~~~-l~~~~--------------~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------   59 (170)
T 3q87_B            4 YEPGEDTYTLMDA-LEREG--------------LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------   59 (170)
T ss_dssp             CCCCHHHHHHHHH-HHHHT--------------CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------
T ss_pred             cCcCccHHHHHHH-HHhhc--------------CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------
Confidence            3347999887776 44311              124689999999999999999885   99999999999987      


Q ss_pred             HhCCCcEEEEecchhH-----HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          192 LSGITNGYFIATNATS-----TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       192 ~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                         ..+++++++|+.+     .||.+++||||.      ..+++..    .........+++.+.+.| |||.+++....
T Consensus        60 ---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           60 ---HRGGNLVRADLLCSINQESVDVVVFNPPYV------PDTDDPI----IGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             ---CSSSCEEECSTTTTBCGGGCSEEEECCCCB------TTCCCTT----TBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             ---ccCCeEEECChhhhcccCCCCEEEECCCCc------cCCcccc----ccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence               3568899999864     356666666652      1111100    000001125677777777 99999997655


Q ss_pred             HHHHHHHHHHHHHcCCcceeeecc
Q 019743          267 EEVMLRMKQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       267 ~~~~~~~~~~l~~~g~~~~~~~~d  290 (336)
                      ....+.+.+.+.+.||....+..+
T Consensus       126 ~~~~~~l~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          126 ANRPKEVLARLEERGYGTRILKVR  149 (170)
T ss_dssp             GGCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCcEEEEEee
Confidence            566788999999999987766654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.60  E-value=3.2e-14  Score=121.37  Aligned_cols=145  Identities=12%  Similarity=0.096  Sum_probs=100.0

Q ss_pred             cCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCC
Q 019743           91 IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD  170 (336)
Q Consensus        91 ~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~  170 (336)
                      .|.|.++.+.+  ..+        +|.+....+.++.....          ....++.+|||+|||+|.+++.+++. +.
T Consensus         9 ~~~g~~l~~~~--~~~--------rp~~~~~~~~l~~~l~~----------~~~~~~~~vLDlgcG~G~~~~~~~~~-~~   67 (189)
T 3p9n_A            9 VAGGRRIAVPP--RGT--------RPTTDRVRESLFNIVTA----------RRDLTGLAVLDLYAGSGALGLEALSR-GA   67 (189)
T ss_dssp             TTTTCEEECCS--CCC-----------CHHHHHHHHHHHHH----------HSCCTTCEEEEETCTTCHHHHHHHHT-TC
T ss_pred             ccCCcEecCCC--CCC--------ccCcHHHHHHHHHHHHh----------ccCCCCCEEEEeCCCcCHHHHHHHHC-CC
Confidence            36777776643  333        57776665555442210          00013578999999999999988875 45


Q ss_pred             CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHH
Q 019743          171 LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  250 (336)
Q Consensus       171 ~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~  250 (336)
                      .+++|+|+|+.|++.|++|++.+++.+++++++|+.+.... +  ++..+|.++++.|-.+   .    .....++++.+
T Consensus        68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~--~~~~fD~i~~~~p~~~---~----~~~~~~~l~~~  137 (189)
T 3p9n_A           68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA-G--TTSPVDLVLADPPYNV---D----SADVDAILAAL  137 (189)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH-C--CSSCCSEEEECCCTTS---C----HHHHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh-c--cCCCccEEEECCCCCc---c----hhhHHHHHHHH
Confidence            68999999999999999999999988999999999775321 1  3455677666533111   0    01345888889


Q ss_pred             Hh--cCcCCcEEEEEeCc
Q 019743          251 SD--LLVHDGKVFLQSDI  266 (336)
Q Consensus       251 ~~--~LkpgG~l~~~~~~  266 (336)
                      .+  +|+|||.+++++..
T Consensus       138 ~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          138 GTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHSSSCCTTCEEEEEEET
T ss_pred             HhcCccCCCeEEEEEecC
Confidence            88  99999999997753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=4.3e-15  Score=128.26  Aligned_cols=124  Identities=17%  Similarity=0.236  Sum_probs=101.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..++..++.++++|+.+.       ++..+|.++..
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~~~~fD~i~~~  132 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-------VDGKFDLIVAN  132 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-------CCSCEEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-------CCCCceEEEEC
Confidence            578999999999999998875 5679999999999999999999999888899999998653       35667877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      .+..           ....+++++.+.|+|||.+++........+.+.+.+.+.||.......
T Consensus       133 ~~~~-----------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          133 ILAE-----------ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             SCHH-----------HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEE
T ss_pred             CcHH-----------HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeec
Confidence            3211           236889999999999999999654445577888999999998776543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.58  E-value=1.7e-14  Score=128.67  Aligned_cols=158  Identities=12%  Similarity=0.034  Sum_probs=119.4

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHh-CCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~-~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||+|.++..+++. .|..+++++|+|+.+++.|+++++.+ +..++.+.++|+.+.     ..++..+|.++
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-----~~~~~~~D~v~  171 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-----ELEEAAYDGVA  171 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-----CCCTTCEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-----CCCCCCcCEEE
Confidence            579999999999999999998 67899999999999999999999888 777899999998653     11445689888


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE  304 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~  304 (336)
                      +..++++             .+++++.+.|+|||.+++.+....+...+.+.+.+.||..++...-..      ..|...
T Consensus       172 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~~~  232 (258)
T 2pwy_A          172 LDLMEPW-------------KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGW------REWEVR  232 (258)
T ss_dssp             EESSCGG-------------GGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEEEEE------EEEEEE
T ss_pred             ECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEEeee------eEeeec
Confidence            8766664             788999999999999999887766777888888888988765543211      112111


Q ss_pred             CCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          305 NSFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       305 ~~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                      .. ....  +  ....|.+.|.+.+||..
T Consensus       233 ~~-~~rp--~--~~~~~~~~~l~~ark~~  256 (258)
T 2pwy_A          233 LP-VAHP--R--FQQVGHTAFLVALRRWK  256 (258)
T ss_dssp             TT-EEEE--C--SSCCCCCCEEEEEEECC
T ss_pred             cC-ccCC--C--CccCCcceEEEEEEecC
Confidence            10 0000  0  02457788888888864

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.58  E-value=3.2e-14  Score=124.36  Aligned_cols=125  Identities=13%  Similarity=0.096  Sum_probs=96.3

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.++|.+...+.......                +..+|||||||+|..++.+|+..| +.+++|+|+++.+++.|++++
T Consensus        40 ~~~~~~~~~~l~~l~~~~----------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  103 (223)
T 3duw_A           40 HDVSPTQGKFLQLLVQIQ----------------GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNI  103 (223)
T ss_dssp             CSCCHHHHHHHHHHHHHH----------------TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhh----------------CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            445677777666554432                256899999999999999999987 789999999999999999999


Q ss_pred             HHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          191 QLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       191 ~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...++.+ ++++++|+.+.+.....+....+|.+++..+.           ..+..+++.+.+.|+|||.+++.
T Consensus       104 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~-----------~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          104 ERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADK-----------QNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             HHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCG-----------GGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCc-----------HHHHHHHHHHHHhcCCCcEEEEe
Confidence            9988865 99999999775443322111346777665321           13468999999999999998884

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.57  E-value=1.7e-14  Score=134.27  Aligned_cols=158  Identities=14%  Similarity=0.086  Sum_probs=113.3

Q ss_pred             eccceee-eecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFW-CTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~-~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      ..|.++| +++. |+|..+.++....+|        .++ +..|.+++....       +   ...++..+|||||||+|
T Consensus        72 ~s~~q~I~v~~~~~~g~~l~ldg~~~~~--------~~d-e~~y~e~L~~l~-------l---~~~~~~~~VLdIG~G~G  132 (334)
T 1xj5_A           72 KSDYQDVIVFQSATYGKVLVLDGVIQLT--------ERD-ECAYQEMITHLP-------L---CSIPNPKKVLVIGGGDG  132 (334)
T ss_dssp             ECSSCEEEEEEESSSCEEEEETTEEEEE--------TTT-HHHHHHHHHHHH-------H---TTSSCCCEEEEETCSSS
T ss_pred             ecCCeEEEEEEcCCCCeEEEECCEeecC--------cCc-chHHHHHHHHHH-------H---hhCCCCCEEEEECCCcc
Confidence            3599998 7766 888877775544444        232 233444443211       0   00113568999999999


Q ss_pred             HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CC--CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCc
Q 019743          159 LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR  234 (336)
Q Consensus       159 ~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~--~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~  234 (336)
                      .++..+++..|..+++++|+|+.+++.|++++...  ++  .+++++++|+.+.+..   .++..+|.|++..++|+.  
T Consensus       133 ~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~---~~~~~fDlIi~d~~~p~~--  207 (334)
T 1xj5_A          133 GVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---AAEGSYDAVIVDSSDPIG--  207 (334)
T ss_dssp             HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---SCTTCEEEEEECCCCTTS--
T ss_pred             HHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh---ccCCCccEEEECCCCccC--
Confidence            99999999878899999999999999999998753  33  5799999999764321   134568988887666652  


Q ss_pred             chhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          235 PEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       235 ~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                        +...++++.+++.+.+.|+|||.+++.+
T Consensus       208 --~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          208 --PAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             --GGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             --cchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence              1223557899999999999999999964

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.57  E-value=5.6e-14  Score=118.98  Aligned_cols=144  Identities=13%  Similarity=0.101  Sum_probs=102.2

Q ss_pred             cCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCC
Q 019743           91 IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD  170 (336)
Q Consensus        91 ~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~  170 (336)
                      .|+|.++.+.+.. .+        +|.+......++.....          .  ..+.+|||+|||+|.+++.+++. +.
T Consensus        10 ~~~~~~~~~~~~~-~~--------rp~~~~~~~~~~~~l~~----------~--~~~~~vLD~GcG~G~~~~~~~~~-~~   67 (187)
T 2fhp_A           10 EYGGRRLKALDGD-NT--------RPTTDKVKESIFNMIGP----------Y--FDGGMALDLYSGSGGLAIEAVSR-GM   67 (187)
T ss_dssp             TTTTCBCCCCCCC-SS--------CCCCHHHHHHHHHHHCS----------C--CSSCEEEETTCTTCHHHHHHHHT-TC
T ss_pred             cccCccccCCCCC-Cc--------CcCHHHHHHHHHHHHHh----------h--cCCCCEEEeCCccCHHHHHHHHc-CC
Confidence            4678877774332 34        68887777766654321          0  12568999999999999998874 46


Q ss_pred             CeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHH
Q 019743          171 LNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA  249 (336)
Q Consensus       171 ~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~  249 (336)
                      .+++|+|+|+.+++.|++|+..+++ .+++++++|+.+..... ..++..+|.++.+.|  +. .      ......++.
T Consensus        68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~fD~i~~~~~--~~-~------~~~~~~~~~  137 (187)
T 2fhp_A           68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF-YEEKLQFDLVLLDPP--YA-K------QEIVSQLEK  137 (187)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH-HHTTCCEEEEEECCC--GG-G------CCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH-HhcCCCCCEEEECCC--CC-c------hhHHHHHHH
Confidence            7999999999999999999999887 47999999997743221 112456787766532  11 0      122355566


Q ss_pred             H--HhcCcCCcEEEEEeCc
Q 019743          250 V--SDLLVHDGKVFLQSDI  266 (336)
Q Consensus       250 ~--~~~LkpgG~l~~~~~~  266 (336)
                      +  .++|+|||.+++.+..
T Consensus       138 l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          138 MLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             HHHTTCEEEEEEEEEEEET
T ss_pred             HHHhcccCCCCEEEEEeCC
Confidence            6  8899999999997754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.57  E-value=5.8e-14  Score=119.08  Aligned_cols=112  Identities=16%  Similarity=0.135  Sum_probs=81.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+.|++.|+++++.+++.|+++++.+.... +.   .++..+|.++.+
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l-~~---~~~~~fD~v~~~   96 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL-DH---YVREPIRAAIFN   96 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG-GG---TCCSCEEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH-Hh---hccCCcCEEEEe
Confidence            578999999999999999988  789999999999999999999999988999999776543 11   134567877655


Q ss_pred             CCC-CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~d-p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ++. |...............+++++.+.|||||++++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            311 10000000011123578899999999999999854

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.57  E-value=3.1e-14  Score=127.52  Aligned_cols=123  Identities=15%  Similarity=0.282  Sum_probs=100.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+++..+  +++|+|+|+.+++.|++|+..++.. +++.++|+.+.    +  |+..+|.++.+
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~--~~~~fD~Vv~n  191 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L--PFGPFDLLVAN  191 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G--GGCCEEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C--cCCCCCEEEEC
Confidence            57899999999999999998754  9999999999999999999998877 89999998763    2  23457877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      .+.      +     ....+++.+.+.|+|||++++........+.+.+.+.+.||.......
T Consensus       192 ~~~------~-----~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          192 LYA------E-----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             CCH------H-----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred             CcH------H-----HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEec
Confidence            321      1     235889999999999999999654556688899999999998776554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.57  E-value=5.7e-14  Score=125.23  Aligned_cols=127  Identities=14%  Similarity=0.083  Sum_probs=99.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++..+. +++|+|+|+.+++.|++++..+++.+ +.++++|+...     +.++..+|.++.
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  120 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-----PFQNEELDLIWS  120 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----SSCTTCEEEEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CCCCCCEEEEEe
Confidence            569999999999999999999864 99999999999999999999988865 99999998543     224567888876


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-------HH-------------HHHHHHHHHHHcCCcce
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE-------------VMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-------~~-------------~~~~~~~~l~~~g~~~~  285 (336)
                      ...-.+.         ....+++++.++|+|||++++....       ..             ....+.+.+++.||..+
T Consensus       121 ~~~l~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  191 (257)
T 3f4k_A          121 EGAIYNI---------GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPT  191 (257)
T ss_dssp             ESCSCCC---------CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEE
T ss_pred             cChHhhc---------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEE
Confidence            6433321         2358999999999999999995421       00             12456788899999876


Q ss_pred             eee
Q 019743          286 VLV  288 (336)
Q Consensus       286 ~~~  288 (336)
                      ...
T Consensus       192 ~~~  194 (257)
T 3f4k_A          192 AHF  194 (257)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=2.8e-13  Score=113.88  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=97.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++  +..+++|+|+|+.+++.|++++..+++++++++++|+.+.    +  |+..+|.++..
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~D~i~~~  107 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV----L--DKLEFNKAFIG  107 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH----G--GGCCCSEEEEC
T ss_pred             CCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc----c--cCCCCcEEEEC
Confidence            56899999999999999998  6899999999999999999999999888999999998763    2  22356776665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      .+ .           ....+++.+.+.  |||.+++.+........+.+.+.+.||....
T Consensus       108 ~~-~-----------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  153 (183)
T 2yxd_A          108 GT-K-----------NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDA  153 (183)
T ss_dssp             SC-S-----------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             Cc-c-----------cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEE
Confidence            44 1           235888888888  9999999886667788899999999976543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.56  E-value=2e-13  Score=115.55  Aligned_cols=119  Identities=15%  Similarity=0.253  Sum_probs=97.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++..  .+++|+|+|+.+++.|++++..++. .++.+.++|+.+.++.     ...+|.++.
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~D~v~~  106 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-----IPDIDIAVV  106 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-----SCCEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-----CCCCCEEEE
Confidence            5789999999999999999886  8999999999999999999998887 6899999998763211     135777766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      ..+..           ....+++.+.+.|+|||.+++..........+.+.+.+.||.
T Consensus       107 ~~~~~-----------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~  153 (192)
T 1l3i_A          107 GGSGG-----------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD  153 (192)
T ss_dssp             SCCTT-----------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred             CCchH-----------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCc
Confidence            53321           125899999999999999999776667778888999999984

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.56  E-value=2e-14  Score=138.61  Aligned_cols=169  Identities=14%  Similarity=0.109  Sum_probs=117.9

Q ss_pred             cceeeeecc-CC---CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           83 PKDFWCTKI-HH---PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        83 Pvd~~~~~~-~~---~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      |+.++.|.. |+   |.++.+.+.+.++.      -.+.|+.+++.+++....             ....+|||+|||+|
T Consensus       238 ~~~~l~g~~~~~~~~g~~~~~~~~~f~q~------n~~~~e~l~~~~~~~l~~-------------~~~~~VLDlgcG~G  298 (433)
T 1uwv_A          238 ILETVSGEMPWYDSNGLRLTFSPRDFIQV------NAGVNQKMVARALEWLDV-------------QPEDRVLDLFCGMG  298 (433)
T ss_dssp             CCEEEECCCCEEEETTEEEECCSSSCCCS------BHHHHHHHHHHHHHHHTC-------------CTTCEEEEESCTTT
T ss_pred             eEEEEeCCCcEEEECCEEEEECccccccc------CHHHHHHHHHHHHHhhcC-------------CCCCEEEECCCCCC
Confidence            778888876 66   77788877666552      124577777777654321             13568999999999


Q ss_pred             HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhh
Q 019743          159 LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR  238 (336)
Q Consensus       159 ~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~  238 (336)
                      .+++.+|+.  ..+|+|+|+|+.|++.|++|++.++++|+.|+++|+.+.+... ..+...+|.++++.|-..       
T Consensus       299 ~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~-~~~~~~fD~Vv~dPPr~g-------  368 (433)
T 1uwv_A          299 NFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKVLLDPARAG-------  368 (433)
T ss_dssp             TTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS-GGGTTCCSEEEECCCTTC-------
T ss_pred             HHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh-hhhcCCCCEEEECCCCcc-------
Confidence            999999988  6899999999999999999999999989999999997632110 001234565554321110       


Q ss_pred             hhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          239 WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       239 ~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                         . ..+++.+. .++|++.+++..+...+.... ..|.+.||....
T Consensus       369 ---~-~~~~~~l~-~~~p~~ivyvsc~p~tlard~-~~l~~~Gy~~~~  410 (433)
T 1uwv_A          369 ---A-AGVMQQII-KLEPIRIVYVSCNPATLARDS-EALLKAGYTIAR  410 (433)
T ss_dssp             ---C-HHHHHHHH-HHCCSEEEEEESCHHHHHHHH-HHHHHTTCEEEE
T ss_pred             ---H-HHHHHHHH-hcCCCeEEEEECChHHHHhhH-HHHHHCCcEEEE
Confidence               1 14455544 378999999988766655554 455667888665

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.56  E-value=3.2e-14  Score=124.90  Aligned_cols=123  Identities=13%  Similarity=0.034  Sum_probs=99.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCC-eEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPG-KLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~-~~d~i~  224 (336)
                      +.+|+|||||||++++.+|+..|..+|+|+|+++.+++.|++|++.+++. ++.+.++|+++.+      ++. .+|.++
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~------~~~~~~D~Iv   95 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF------EEADNIDTIT   95 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEEE
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc------ccccccCEEE
Confidence            56899999999999999999988889999999999999999999999986 4999999987642      122 367655


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      +..          -......+++....+.|+++|++++....  ..+.+++.+.++||.....
T Consensus        96 iaG----------mGg~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A           96 ICG----------MGGRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             EEE----------ECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHTTEEEEEE
T ss_pred             EeC----------CchHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHHCCCEEEEE
Confidence            421          01124568999999999999999996643  3678899999999987643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.55  E-value=8.1e-14  Score=129.09  Aligned_cols=130  Identities=12%  Similarity=0.114  Sum_probs=97.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--C--CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--G--ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~--~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..|..+++++|+|+.+++.|++++...  +  ..+++++++|+.+.+..    ++..+|.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fDv  192 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYDV  192 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh----cCCCceE
Confidence            56899999999999999998878899999999999999999998652  2  25799999999765322    3556888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCcce
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~  285 (336)
                      |+++.++|+.    +...+..+++++.+.+.|+|||.+++.+...    +....+.+.+.+. |..+
T Consensus       193 Ii~d~~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  254 (321)
T 2pt6_A          193 IIVDSSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV  254 (321)
T ss_dssp             EEEECCCSSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred             EEECCcCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCe
Confidence            8887766641    1223444799999999999999999976431    2334455555544 4443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.55  E-value=1.6e-14  Score=125.83  Aligned_cols=132  Identities=11%  Similarity=0.150  Sum_probs=92.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH----HHhCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~----~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||||||+|.++..+++.+|+.+++|+|+|+.|++.+.+++    ...+.+|+.++++|+.+.     ..++.. |.
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~-d~  101 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-----PPLSGV-GE  101 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-----CSCCCE-EE
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-----CCCCCC-CE
Confidence            57899999999999999999999999999999999888654433    345667899999998763     113344 65


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------------------HHHHHHHHHHHHHcCCcc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------------------EEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------------------~~~~~~~~~~l~~~g~~~  284 (336)
                      +++.++...   .+.........+++++.++|||||.+++..+.                  ....+.+...+.+.||..
T Consensus       102 v~~~~~~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i  178 (218)
T 3mq2_A          102 LHVLMPWGS---LLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKL  178 (218)
T ss_dssp             EEEESCCHH---HHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEE
T ss_pred             EEEEccchh---hhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCc
Confidence            555443211   00000011258999999999999999995421                  112334777888999986


Q ss_pred             eee
Q 019743          285 LVL  287 (336)
Q Consensus       285 ~~~  287 (336)
                      ..+
T Consensus       179 ~~~  181 (218)
T 3mq2_A          179 ADC  181 (218)
T ss_dssp             EEE
T ss_pred             eee
Confidence            654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.55  E-value=3e-14  Score=126.15  Aligned_cols=121  Identities=15%  Similarity=0.082  Sum_probs=98.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCC-eEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPG-KLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~-~~d~i~  224 (336)
                      +.+|||||||||++++.+|+..|..+++|+|+++.+++.|++|++.+++.+ +.+.++|+++.+      ++. .+|.++
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~------~~~~~~D~Iv   95 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI------EKKDAIDTIV   95 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEEE
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc------CccccccEEE
Confidence            568999999999999999999888899999999999999999999999865 999999987642      222 367655


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      +..          ....+..++++...+.|+++|++++....  -...+++.+.++||...
T Consensus        96 iag----------mGg~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~~~Gf~i~  144 (244)
T 3gnl_A           96 IAG----------MGGTLIRTILEEGAAKLAGVTKLILQPNI--AAWQLREWSEQNNWLIT  144 (244)
T ss_dssp             EEE----------ECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHHTEEEE
T ss_pred             EeC----------CchHHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHHHCCCEEE
Confidence            420          11124568999999999999999997643  36788899999999864

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=2e-14  Score=127.31  Aligned_cols=133  Identities=11%  Similarity=-0.053  Sum_probs=96.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++..| .+++|||+|+.+++.|++++...+ .+++++++|+.....   ..|...+|.++. 
T Consensus        61 G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~---~~~~~~FD~i~~-  134 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---TLPDGHFDGILY-  134 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG---GSCTTCEEEEEE-
T ss_pred             CCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcc---cccccCCceEEE-
Confidence            67999999999999999998776 589999999999999999987655 468999999876422   235677887754 


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc--------------HHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--------------EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~~~~~~l~~~g~~~~~~  287 (336)
                        |++.......+......+++++.++|||||+|.+....              ..+.+.....|.+.||....+
T Consensus       135 --D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i  207 (236)
T 3orh_A          135 --DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI  207 (236)
T ss_dssp             --CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred             --eeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence              33322222223334578999999999999999873210              112334556677889976544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.54  E-value=5.7e-14  Score=125.12  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=96.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...++. |+.++++|+.+.     . ++..+|.++.
T Consensus        37 ~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~V~~  109 (256)
T 1nkv_A           37 GTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----V-ANEKCDVAAC  109 (256)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-----C-CSSCEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC-----C-cCCCCCEEEE
Confidence            5789999999999999999987 679999999999999999999988875 899999998653     1 1356787765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-------HH--------------HHHHHHHHHHHcCCcc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE--------------VMLRMKQQFLEYGKGK  284 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-------~~--------------~~~~~~~~l~~~g~~~  284 (336)
                      ...-.+..        ...++++++.++|||||++++....       ..              ....+.+.+.+.||..
T Consensus       110 ~~~~~~~~--------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  181 (256)
T 1nkv_A          110 VGATWIAG--------GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDV  181 (256)
T ss_dssp             ESCGGGTS--------SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCC
T ss_pred             CCChHhcC--------CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCee
Confidence            42211110        1358999999999999999994321       00              1246778889999987


Q ss_pred             eee
Q 019743          285 LVL  287 (336)
Q Consensus       285 ~~~  287 (336)
                      +..
T Consensus       182 ~~~  184 (256)
T 1nkv_A          182 VEM  184 (256)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.54  E-value=4e-14  Score=122.63  Aligned_cols=103  Identities=13%  Similarity=0.192  Sum_probs=84.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++...+.. ++.++++|+.+.     +.++..+|.++..
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~~  118 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-----PIEDNYADLIVSR  118 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-----SSCTTCEEEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-----CCCcccccEEEEC
Confidence            38999999999999999998 7889999999999999999999988875 799999998653     2245678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+.        .....+++++.++|+|||.+++..
T Consensus       119 ~~l~~~--------~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          119 GSVFFW--------EDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             SCGGGC--------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHhhc--------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence            432221        123589999999999999999953

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.54  E-value=7.6e-14  Score=126.26  Aligned_cols=125  Identities=17%  Similarity=0.210  Sum_probs=104.1

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHh-C--CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-G--ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~-~--~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||+|||+|.++..+++. .|..+++++|+|+.+++.|++|++.+ +  ..|+.++++|+.+.   .+  ++..+|.
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~---~~--~~~~~D~  174 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS---EL--PDGSVDR  174 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC---CC--CTTCEEE
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc---CC--CCCceeE
Confidence            568999999999999999986 57899999999999999999999887 6  57899999998653   12  3556898


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHH-cCCcceeeec
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKGKLVLVQ  289 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~  289 (336)
                      ++++.++|+             .+++++.+.|+|||.+++.+...++...+.+.+.+ .+|...+...
T Consensus       175 v~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~  229 (280)
T 1i9g_A          175 AVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWE  229 (280)
T ss_dssp             EEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEEC
T ss_pred             EEECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEEE
Confidence            888877765             78899999999999999988776777777777777 6787665553

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.54  E-value=1.1e-13  Score=121.84  Aligned_cols=128  Identities=13%  Similarity=0.087  Sum_probs=97.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|||+|.++..+|+. .|+.+|+|+|+|+.|++.++++++.  ..|+..+.+|+...-..  ..+...+|.++
T Consensus        77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~~--~~~~~~vDvVf  152 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEKY--RHLVEGVDGLY  152 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGGG--TTTCCCEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCcccc--ccccceEEEEE
Confidence            4789999999999999999998 5899999999999999999988764  36899999988653111  12345678777


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ..++.|+          ..+.++.++.+.|||||++++..         ..........+.|.+.||...+.
T Consensus       153 ~d~~~~~----------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~  214 (233)
T 4df3_A          153 ADVAQPE----------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV  214 (233)
T ss_dssp             ECCCCTT----------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             EeccCCh----------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE
Confidence            6554443          23578999999999999998843         11223445667788899987654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=8.6e-14  Score=124.16  Aligned_cols=123  Identities=16%  Similarity=0.144  Sum_probs=94.9

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.++|.+...+.......                +..+|||||||+|..++.+|+..| +.+++|+|+|+.+++.|++++
T Consensus        45 ~~~~~~~~~~l~~l~~~~----------------~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~  108 (248)
T 3tfw_A           45 HDVAANQGQFLALLVRLT----------------QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL  108 (248)
T ss_dssp             CCCCHHHHHHHHHHHHHH----------------TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHhhc----------------CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            344576766665554322                256899999999999999999987 899999999999999999999


Q ss_pred             HHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          191 QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       191 ~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +..++. +++++++|+.+.++..-  .+..+|.+++..+.           ..+..+++.+.+.|+|||.+++.
T Consensus       109 ~~~g~~~~v~~~~~d~~~~l~~~~--~~~~fD~V~~d~~~-----------~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          109 QLAGVDQRVTLREGPALQSLESLG--ECPAFDLIFIDADK-----------PNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             HHTTCTTTEEEEESCHHHHHHTCC--SCCCCSEEEECSCG-----------GGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHcCCCCcEEEEEcCHHHHHHhcC--CCCCeEEEEECCch-----------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            998886 79999999977543321  22357877764321           13458999999999999999984

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.54  E-value=4e-14  Score=123.18  Aligned_cols=128  Identities=9%  Similarity=0.099  Sum_probs=100.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|++++...+..++.++++|+...     ..++..+|.++.
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  112 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-----PLPDNTVDFIFM  112 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC-----SSCSSCEEEEEE
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC-----CCCCCCeeEEEe
Confidence            5689999999999999999986 7889999999999999999999999888999999998653     124566888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------------HHHHHHHHHHHHHcCCcceee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------------EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...-.+..        ....+++++.++|+|||.+++..-.            ....+.+.+.+.+.||..+..
T Consensus       113 ~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          113 AFTFHELS--------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             ESCGGGCS--------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             ehhhhhcC--------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence            53322211        2358999999999999999995311            011467888899999987654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.54  E-value=9.6e-14  Score=123.86  Aligned_cols=126  Identities=13%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHH
Q 019743          111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n  189 (336)
                      .+.++|++...+...+...                +..+|||||||+|..++.+|+..| +.+++++|+|+.+++.|+++
T Consensus        60 ~~~~~~~~~~ll~~l~~~~----------------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~  123 (247)
T 1sui_A           60 IMTTSADEGQFLSMLLKLI----------------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPV  123 (247)
T ss_dssp             GGSCCHHHHHHHHHHHHHT----------------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHhh----------------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            4556788887776655432                246899999999999999999977 78999999999999999999


Q ss_pred             HHHhCCC-cEEEEecchhHHHHhhhcC--CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          190 LQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       190 ~~~~~~~-nv~~~~~d~~~~~d~ivsn--pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ++..++. +++++++|+.+.++.....  ++..+|.+++....           ..+..+++.+.++|+|||.+++.
T Consensus       124 ~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~-----------~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          124 IKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK-----------DNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             HHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS-----------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch-----------HHHHHHHHHHHHhCCCCeEEEEe
Confidence            9998874 7999999998754433211  13456877765321           13568999999999999999884

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.54  E-value=6.5e-14  Score=122.88  Aligned_cols=121  Identities=15%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHh
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLS  193 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~  193 (336)
                      .|++...+........             ..+.++|||||||+|..++.+|+.. |+.+++++|+|+.+++.|++|++..
T Consensus        38 ~~~~~~~l~~l~~~~~-------------~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  104 (221)
T 3dr5_A           38 DEMTGQLLTTLAATTN-------------GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA  104 (221)
T ss_dssp             CHHHHHHHHHHHHHSC-------------CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhC-------------CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            5777777766554322             0124589999999999999999986 4899999999999999999999998


Q ss_pred             CCC--cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          194 GIT--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       194 ~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++.  +++++++|+.+.+...   ++..+|.+++....           ..+..+++.+.+.|+|||.+++
T Consensus       105 g~~~~~i~~~~gda~~~l~~~---~~~~fD~V~~d~~~-----------~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          105 GYSPSRVRFLLSRPLDVMSRL---ANDSYQLVFGQVSP-----------MDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             TCCGGGEEEECSCHHHHGGGS---CTTCEEEEEECCCT-----------TTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCcCcEEEEEcCHHHHHHHh---cCCCcCeEEEcCcH-----------HHHHHHHHHHHHHcCCCcEEEE
Confidence            886  7999999997753321   24568888765321           1345789999999999999998

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.54  E-value=9e-14  Score=122.69  Aligned_cols=101  Identities=19%  Similarity=0.264  Sum_probs=85.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHH-hhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFR-SIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d-~ivsnpp~~~d~i~  224 (336)
                      ..+|||||||+|..++.+|+..|..+++|+|+|+.+++.|+++++..++. +++++++|+.+.+. .    .+..+|.++
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~fD~V~  147 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV----NDKVYDMIF  147 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH----TTSCEEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh----ccCCccEEE
Confidence            56899999999999999999888999999999999999999999998885 89999999977533 2    145678887


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +..+.+           .+..+++.+.+.|+|||.+++
T Consensus       148 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          148 IDAAKA-----------QSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             EETTSS-----------SHHHHHHHHGGGEEEEEEEEE
T ss_pred             EcCcHH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence            663221           346899999999999999988

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.53  E-value=6e-14  Score=126.58  Aligned_cols=106  Identities=14%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||+|.++..+++..|..+++|+|+|+.+++.|++++...+..++.++++|+...     ..++..+|.++.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  111 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-----PFEDSSFDHIFV  111 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-----CSCTTCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-----CCCCCCeeEEEE
Confidence            367999999999999999999999999999999999999999999998888999999998753     224567888876


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...-.+..        ....+++++.++|+|||.+++..
T Consensus       112 ~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          112 CFVLEHLQ--------SPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             ESCGGGCS--------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             echhhhcC--------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            54322211        12489999999999999999853

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.53  E-value=2.9e-14  Score=123.07  Aligned_cols=119  Identities=14%  Similarity=0.036  Sum_probs=95.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++..|..+++|+|+|+.+++.|++++..++.+++.++++|+.+.     . ++..+|.++..
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~i~~~  139 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----P-SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----C-CCSCEEEEECS
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC-----C-ccCCcCEEEEe
Confidence            46899999999999999999999999999999999999999999999888899999998653     1 34567877653


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      ..            .....+++.+.+.|+|||.+++..+.. +.+.+.+.+.  ||....
T Consensus       140 ~~------------~~~~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~~--g~~~~~  184 (207)
T 1jsx_A          140 AF------------ASLNDMVSWCHHLPGEQGRFYALKGQM-PEDEIALLPE--EYQVES  184 (207)
T ss_dssp             CS------------SSHHHHHHHHTTSEEEEEEEEEEESSC-CHHHHHTSCT--TEEEEE
T ss_pred             cc------------CCHHHHHHHHHHhcCCCcEEEEEeCCC-chHHHHHHhc--CCceee
Confidence            21            123589999999999999999987653 3555555544  666443

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.53  E-value=9.2e-14  Score=119.03  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=86.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|++++..+++ .++.++++|+.+..+    .++..+|.++
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~fD~v~   98 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK----YIDCPVKAVM   98 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG----TCCSCEEEEE
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh----hccCCceEEE
Confidence            5799999999999999999985 678999999999999999999999887 689999999865411    2345678776


Q ss_pred             eeCCC-CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~d-p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .+.+. |..............++++++.++|+|||++++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            65432 21100000111133579999999999999999854

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.53  E-value=5.4e-14  Score=130.97  Aligned_cols=160  Identities=14%  Similarity=0.074  Sum_probs=98.9

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhC-----------CCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-----------ITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~-----------~~nv~~~~~d~~~~~d~ivs  214 (336)
                      +.+|||+|||+|.++..+++. .|..+++|+|+++.+++.|++|+...+           ..|+.++++|+.+.... + 
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~-~-  183 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED-I-  183 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc-c-
Confidence            578999999999999999998 577999999999999999999998643           25799999998753111 1 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc--CCcceeeecccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY--GKGKLVLVQDEC  292 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~d~~  292 (336)
                       ++..+|.+++..++|+             .+++++.+.|+|||.+++......+...+.+.+.+.  +|....+...  
T Consensus       184 -~~~~fD~V~~~~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  247 (336)
T 2b25_A          184 -KSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEV--  247 (336)
T ss_dssp             -----EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECC--
T ss_pred             -CCCCeeEEEECCCCHH-------------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEe--
Confidence             3446898888777765             478899999999999999877666666666666653  3433322221  


Q ss_pred             ccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEE
Q 019743          293 DTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLM  328 (336)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~  328 (336)
                          ....|...........|...+.+.|+...++.
T Consensus       248 ----~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~  279 (336)
T 2b25_A          248 ----IVRDWLVCLAKQKNGILAQKVESKINTDVQLD  279 (336)
T ss_dssp             ----CCCCEEECC-----------------------
T ss_pred             ----cccceEEEeecccccchhhhhccccccccccc
Confidence                12335432221222267777777777665543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.53  E-value=1.4e-13  Score=120.40  Aligned_cols=125  Identities=15%  Similarity=0.204  Sum_probs=95.6

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.+.|++...+...+...                +..+|||||||+|..++.+|+..| ..+++++|+|+.+++.|++++
T Consensus        46 ~~~~~~~~~~l~~l~~~~----------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  109 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLM----------------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYW  109 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHH----------------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhh----------------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence            445677766666554432                246899999999999999999887 899999999999999999999


Q ss_pred             HHhCCCc-EEEEecchhHHHHhhhcC-CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          191 QLSGITN-GYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       191 ~~~~~~n-v~~~~~d~~~~~d~ivsn-pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +..++.+ ++++++|+.+.++..... ....+|.+++..+           ...+..+++.+.+.|+|||.+++.
T Consensus       110 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~-----------~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          110 EKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD-----------KANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             HHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC-----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC-----------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9988864 999999997754433210 0156787775432           123468999999999999999983

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.53  E-value=1.2e-13  Score=124.16  Aligned_cols=128  Identities=14%  Similarity=0.092  Sum_probs=99.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++++..++. ++.++++|+.+.     +.++..+|.++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~i~  119 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-----PFRNEELDLIW  119 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-----CCCCCCEEEEE
Confidence            3679999999999999999988 7889999999999999999999988875 599999998653     22456788877


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-------HH-------------HHHHHHHHHHHcCCcc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE-------------VMLRMKQQFLEYGKGK  284 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-------~~-------------~~~~~~~~l~~~g~~~  284 (336)
                      ....-.+         .....+++++.++|+|||++++.+..       ..             ....+.+.+.+.||..
T Consensus       120 ~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  190 (267)
T 3kkz_A          120 SEGAIYN---------IGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP  190 (267)
T ss_dssp             ESSCGGG---------TCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred             EcCCcee---------cCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence            6532222         12368999999999999999995421       00             1345778889999987


Q ss_pred             eeee
Q 019743          285 LVLV  288 (336)
Q Consensus       285 ~~~~  288 (336)
                      +...
T Consensus       191 v~~~  194 (267)
T 3kkz_A          191 VATF  194 (267)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.52  E-value=3e-14  Score=134.77  Aligned_cols=122  Identities=19%  Similarity=0.228  Sum_probs=87.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC---cEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~---nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ..+|||+|||+|.+++.+++.+|..+++|+|+|+.|++.|++|+..+++.   +++|+.+|+.+.    +  ++..+|.|
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~----~--~~~~fD~I  296 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNAV  296 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT----C--CTTCEEEE
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc----C--CCCCeeEE
Confidence            46899999999999999999999999999999999999999999998865   589999998752    1  23345554


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHH
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  277 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l  277 (336)
                      +.+.|-.+   ..........++++++.+.|+|||.+++.... ..+...+.+.+
T Consensus       297 i~nppfh~---~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~f  348 (375)
T 4dcm_A          297 LCNPPFHQ---QHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF  348 (375)
T ss_dssp             EECCCC----------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHH
T ss_pred             EECCCccc---CcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhc
Confidence            44322110   00001123357899999999999999996532 33444444443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.52  E-value=3.1e-14  Score=129.30  Aligned_cols=121  Identities=13%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+|+..+. +|+|+|+|+.|++.|++|++.+++.+ ++++++|+.+..      ++..+|.+++
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~------~~~~fD~Vi~  198 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRILM  198 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEEE
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc------ccCCccEEEE
Confidence            578999999999999999998755 89999999999999999999999876 999999987641      1456787766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------HHHHHHHHHHHHHcCCccee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~l~~~g~~~~~  286 (336)
                      +.|..            ...+++.+.+.|+|||.+++.+..      ....+.+.+.+.+.||....
T Consensus       199 ~~p~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          199 GYVVR------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             CCCSS------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCchh------------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            53321            136788999999999999995533      24456778888888987543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.51  E-value=1.9e-13  Score=113.86  Aligned_cols=141  Identities=14%  Similarity=0.132  Sum_probs=96.9

Q ss_pred             cCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCC
Q 019743           91 IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD  170 (336)
Q Consensus        91 ~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~  170 (336)
                      .|+|.++...+.   +        +|.+....+.++.....         .+  +++.+|||+|||+|.++..+++..+.
T Consensus         8 ~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~---------~~--~~~~~vLD~GcG~G~~~~~l~~~~~~   65 (171)
T 1ws6_A            8 KARGVALKVPAS---A--------RPSPVRLRKALFDYLRL---------RY--PRRGRFLDPFAGSGAVGLEAASEGWE   65 (171)
T ss_dssp             GGTTCEECCCTT---C--------CCCCHHHHHHHHHHHHH---------HC--TTCCEEEEETCSSCHHHHHHHHTTCE
T ss_pred             ccCCeEecCCCC---C--------CCCHHHHHHHHHHHHHh---------hc--cCCCeEEEeCCCcCHHHHHHHHCCCe
Confidence            367776666433   2        56666665555443210         00  02568999999999999999998654


Q ss_pred             CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHH
Q 019743          171 LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  250 (336)
Q Consensus       171 ~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~  250 (336)
                        ++|+|+|+.+++.|++|+..++. +++++++|+.+.....- ..+..+|.++...|  +.  .      ..+.+++.+
T Consensus        66 --v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~~~D~i~~~~~--~~--~------~~~~~~~~~  131 (171)
T 1ws6_A           66 --AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAK-AQGERFTVAFMAPP--YA--M------DLAALFGEL  131 (171)
T ss_dssp             --EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHH-HTTCCEEEEEECCC--TT--S------CTTHHHHHH
T ss_pred             --EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhh-ccCCceEEEEECCC--Cc--h------hHHHHHHHH
Confidence              99999999999999999998887 89999999977432221 12235677666532  11  0      112455555


Q ss_pred             H--hcCcCCcEEEEEeCcH
Q 019743          251 S--DLLVHDGKVFLQSDIE  267 (336)
Q Consensus       251 ~--~~LkpgG~l~~~~~~~  267 (336)
                      .  ++|+|||.+++.+...
T Consensus       132 ~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          132 LASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             HHHTCEEEEEEEEEEEETT
T ss_pred             HhhcccCCCcEEEEEeCCc
Confidence            5  9999999999977643

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.51  E-value=1.4e-13  Score=121.26  Aligned_cols=126  Identities=12%  Similarity=0.056  Sum_probs=93.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+|+..+..+|+|+|+|+.|++.|+++++.+  .|+.++++|+..... ... .+..+|.++..
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-~~~-~~~~~D~v~~~  150 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE-YAN-IVEKVDVIYED  150 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG-GTT-TSCCEEEEEEC
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccc-ccc-cCccEEEEEEe
Confidence            57899999999999999999987789999999999999999997654  789999999865211 111 12467877754


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------H-HHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------E-VMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------~-~~~~~~~~l~~~g~~~~~~  287 (336)
                      .+++.          ..+.+++++.+.|+|||.+++.....         . ..+.+. .+.+.||.....
T Consensus       151 ~~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~  210 (230)
T 1fbn_A          151 VAQPN----------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDE  210 (230)
T ss_dssp             CCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEE
T ss_pred             cCChh----------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEE
Confidence            44331          23578999999999999999952110         1 224555 778889876544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.51  E-value=2.1e-13  Score=120.88  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=98.3

Q ss_pred             ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHH
Q 019743          111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n  189 (336)
                      .+.++|++...+...+...                +..+|||||||+|..++.+|+..| +.+++++|+|+.+++.|+++
T Consensus        51 ~~~~~~~~~~~l~~l~~~~----------------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~  114 (237)
T 3c3y_A           51 YMSTSPLAGQLMSFVLKLV----------------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF  114 (237)
T ss_dssp             GGSCCHHHHHHHHHHHHHT----------------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHhh----------------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            4455687777766655432                246899999999999999999976 79999999999999999999


Q ss_pred             HHHhCCC-cEEEEecchhHHHHhhhcC--CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          190 LQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       190 ~~~~~~~-nv~~~~~d~~~~~d~ivsn--pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +++.++. +++++++|+.+.++.....  ++..+|.+++....           ..+..+++.+.+.|+|||.+++..
T Consensus       115 ~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~-----------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          115 IRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADK-----------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCG-----------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCch-----------HHHHHHHHHHHHhcCCCeEEEEec
Confidence            9998885 5999999998765443211  13567877764211           135689999999999999998843

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.51  E-value=8.5e-14  Score=123.41  Aligned_cols=156  Identities=15%  Similarity=0.137  Sum_probs=114.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||+|||+|.++..+++.  ..+++++|+|+.+++.|+++...+++ .++.++++|+.+.+   .  ++..+|.++
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~~D~v~  163 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE---V--PEGIFHAAF  163 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC---C--CTTCBSEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc---c--CCCcccEEE
Confidence            3579999999999999999998  78999999999999999999998887 68999999986531   1  234578777


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE  304 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~  304 (336)
                      ...++++             .+++++.+.|+|||++++.+....+...+.+.+.+. |...+...... .     .|...
T Consensus       164 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~-~-----~~~~~  223 (248)
T 2yvl_A          164 VDVREPW-------------HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEVVEILH-R-----HYKTI  223 (248)
T ss_dssp             ECSSCGG-------------GGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEEEEEEE-E-----EECCC
T ss_pred             ECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceEEEeee-e-----Eeecc
Confidence            7655553             678899999999999999888767777888887776 76555443311 1     12111


Q ss_pred             CCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          305 NSFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       305 ~~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                      . ...  ..+  ....|.+.|.+..||..
T Consensus       224 ~-~~~--~~~--~~~~~~~~~l~~~rk~~  247 (248)
T 2yvl_A          224 S-ERF--RPE--DQMVAHTAYLVFGRKLK  247 (248)
T ss_dssp             G-GGC--CBC--SEEECCSCEEEEEEECC
T ss_pred             c-Ccc--CCC--ccCCCccEEEEEEEecc
Confidence            1 010  011  12467788888888864

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.51  E-value=1.5e-13  Score=116.66  Aligned_cols=125  Identities=14%  Similarity=0.233  Sum_probs=97.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ..+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++..++..+  +.++++|+.+.    .  ++..+|.++
T Consensus        53 ~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~D~v~  124 (194)
T 1dus_A           53 DDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--KDRKYNKII  124 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--TTSCEEEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc----c--ccCCceEEE
Confidence            568999999999999999988  7899999999999999999999888887  99999998653    1  245678776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...+-.+       .......+++.+.+.|+|||.+++.+........+.+.+.+. |...+.
T Consensus       125 ~~~~~~~-------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~~  179 (194)
T 1dus_A          125 TNPPIRA-------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVET  179 (194)
T ss_dssp             ECCCSTT-------CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCEE
T ss_pred             ECCCccc-------chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceEE
Confidence            6532211       012345899999999999999999876666666677777776 444433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.51  E-value=1.1e-13  Score=125.68  Aligned_cols=102  Identities=10%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.+|||||||+|.++..++.+.++++|+|+|+|++|++.|++++++.++.+++|+++|+.+.       |+..+|.+++
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-------~d~~FDvV~~  194 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-------DGLEFDVLMV  194 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG-------GGCCCSEEEE
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC-------CCCCcCEEEE
Confidence            367999999999977654444556899999999999999999999998888899999999763       2345677765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-+           ...++++++.+.|||||++++...
T Consensus       195 ~a~~~-----------d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          195 AALAE-----------PKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CTTCS-----------CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCcc-----------CHHHHHHHHHHHcCCCcEEEEEcC
Confidence            43211           235899999999999999999653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.51  E-value=1.5e-13  Score=120.78  Aligned_cols=165  Identities=11%  Similarity=0.086  Sum_probs=109.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||+|||+|.++..+++..|..+++|+|+|+.+++.|++++...+  ++.++++|+.+.     . ++..+|.++.
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~-----~-~~~~fD~v~~  115 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKY-----D-FEEKYDMVVS  115 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTC-----C-CCSCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhcc-----C-CCCCceEEEE
Confidence            3579999999999999999999999999999999999999999876544  899999998653     1 2356888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HH----HHHHHHHHHHHcCCcceeeeccccccccC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EE----VMLRMKQQFLEYGKGKLVLVQDECDTKTN  297 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~----~~~~~~~~l~~~g~~~~~~~~d~~~~~~~  297 (336)
                      ...-.+..      ......+++++.++|+|||.+++....    ..    ........+...++.......- +    .
T Consensus       116 ~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~  184 (234)
T 3dtn_A          116 ALSIHHLE------DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG-Y----E  184 (234)
T ss_dssp             ESCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTT-C-----
T ss_pred             eCccccCC------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHH-H----H
Confidence            64322211      111236899999999999999985411    11    1112223334445543222110 0    0


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 019743          298 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  332 (336)
Q Consensus       298 ~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~  332 (336)
                      .   ..........++...+.+.|+......++..
T Consensus       185 ~---~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~  216 (234)
T 3dtn_A          185 R---SKLDKDIEMNQQLNWLKEAGFRDVSCIYKYY  216 (234)
T ss_dssp             ------CCCCCBHHHHHHHHHHTTCEEEEEEEEET
T ss_pred             h---cccccccCHHHHHHHHHHcCCCceeeeeeec
Confidence            0   0001112335778889999999888777653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.51  E-value=2.1e-13  Score=119.29  Aligned_cols=145  Identities=14%  Similarity=0.157  Sum_probs=99.3

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.++|++...+...+...+                ..+|||||||+|..++.+|+.. ++.+|+++|+|+.+++.|++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~----------------~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  103 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYS----------------PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQML  103 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHC----------------CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhcC----------------CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH
Confidence            3456888777776654322                4689999999999999999975 4889999999999999999999


Q ss_pred             HHhCCC-cEEEEecchhHHHHhhhc-CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          191 QLSGIT-NGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       191 ~~~~~~-nv~~~~~d~~~~~d~ivs-npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      +.+++. +++++++|+.+.++..-. .+...+|.+++.....+     .   ....++++.+ ++|+|||.+++..-...
T Consensus       104 ~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~-----~---~~~~~~~~~~-~~LkpgG~lv~~~~~~~  174 (221)
T 3u81_A          104 NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR-----Y---LPDTLLLEKC-GLLRKGTVLLADNVIVP  174 (221)
T ss_dssp             HHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG-----H---HHHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred             HHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc-----c---hHHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence            999886 599999999765332210 01145787766521111     0   1123566666 99999999998332111


Q ss_pred             HHHHHHHHHHHcC
Q 019743          269 VMLRMKQQFLEYG  281 (336)
Q Consensus       269 ~~~~~~~~l~~~g  281 (336)
                      ....+.+.+.+..
T Consensus       175 ~~~~~~~~l~~~~  187 (221)
T 3u81_A          175 GTPDFLAYVRGSS  187 (221)
T ss_dssp             CCHHHHHHHHHCT
T ss_pred             chHHHHHHHhhCC
Confidence            1233445555554

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=1.4e-13  Score=129.07  Aligned_cols=123  Identities=18%  Similarity=0.141  Sum_probs=94.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH------HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST------FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~------~d~ivsnpp~~  219 (336)
                      +..|||+|||||.+++.+|... |+.+++|+|+|+.|++.|++|++..+++++++.++|+.+.      ||.+++||||.
T Consensus       204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg  283 (354)
T 3tma_A          204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG  283 (354)
T ss_dssp             TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred             CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence            5689999999999999999987 8899999999999999999999999988999999998763      45666666663


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      ..           ..........++.+++.+.+.|+|||.+++.+....+..   +.+. .||..
T Consensus       284 ~r-----------~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~---~~~~-~g~~~  333 (354)
T 3tma_A          284 LR-----------LGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLK---RALP-PGFAL  333 (354)
T ss_dssp             C---------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHH---HHCC-TTEEE
T ss_pred             Cc-----------cCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH---HHhh-cCcEE
Confidence            11           000111223568999999999999999999887654433   3333 56653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.51  E-value=1.1e-13  Score=122.07  Aligned_cols=125  Identities=10%  Similarity=0.061  Sum_probs=94.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|+.|++.+.++++.+  .|+.++++|+.+...  +..++..+|.++.
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~~~~~~~D~V~~  153 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YRMLIAMVDVIFA  153 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GGGGCCCEEEEEE
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hcccCCcEEEEEE
Confidence            5789999999999999999985 7789999999999999998888765  689999999876311  1113456888877


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH----------HHHHHHHHHHHcCCccee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----------VMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~l~~~g~~~~~  286 (336)
                      ..+.++          ....++.++.+.|+|||.+++.+....          +... .+.|.+.||....
T Consensus       154 ~~~~~~----------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~  213 (233)
T 2ipx_A          154 DVAQPD----------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQE  213 (233)
T ss_dssp             CCCCTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEE
T ss_pred             cCCCcc----------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEE
Confidence            655332          224678889999999999999654321          2233 4677788988655

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.51  E-value=1.2e-13  Score=123.63  Aligned_cols=102  Identities=16%  Similarity=0.257  Sum_probs=83.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++..+  +++|+|+|+.|++.|++++...+..++.++++|+...     +.|+..+|.++..
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~fD~V~~~  110 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTCR  110 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEEE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-----CCCCCCEEEEEEh
Confidence            57899999999999999998864  8999999999999999999988888999999998653     2255678888766


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +.-.+..        ....+++++.++|+|||++++.
T Consensus       111 ~~l~~~~--------d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          111 IAAHHFP--------NPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             SCGGGCS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhHhcC--------CHHHHHHHHHHHcCCCCEEEEE
Confidence            4322211        1248999999999999999984

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.50  E-value=1.7e-13  Score=119.30  Aligned_cols=106  Identities=10%  Similarity=0.024  Sum_probs=81.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-----cEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-----NGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-----nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      ..+|||||||+|.++..+++..|..+++|+|+|+.+++.|++++..+++.     ++.++++|+...     ..++..+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD  104 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-----DKRFHGYD  104 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-----CGGGCSCS
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-----cccCCCcC
Confidence            56899999999999999999988899999999999999999998777665     799999997432     11234567


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      .++....-.+.      .......+++++.++|||||.+++.
T Consensus       105 ~v~~~~~l~~~------~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A          105 AATVIEVIEHL------DLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             EEEEESCGGGC------CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             EEeeHHHHHcC------CHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            76654322211      1112358999999999999977663

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.50  E-value=1.2e-13  Score=116.25  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             cCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh
Q 019743          114 IGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  193 (336)
Q Consensus       114 igpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~  193 (336)
                      .+|.+....+.++.....            ..++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|++.+
T Consensus        11 ~rp~~~~~~~~~~~~l~~------------~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~   77 (177)
T 2esr_A           11 TRPTSDKVRGAIFNMIGP------------YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMT   77 (177)
T ss_dssp             -------CHHHHHHHHCS------------CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHh------------hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence            357666655555543221            013568999999999999999987 5679999999999999999999988


Q ss_pred             CCC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHH--hcCcCCcEEEEEeCc
Q 019743          194 GIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  266 (336)
Q Consensus       194 ~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~l~~~~~~  266 (336)
                      ++. ++.++++|+.+.++.    .+..+|.++.+.|  +    +.   ...+.+++.+.  ++|+|||.+++.+..
T Consensus        78 ~~~~~~~~~~~d~~~~~~~----~~~~fD~i~~~~~--~----~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A           78 KAENRFTLLKMEAERAIDC----LTGRFDLVFLDPP--Y----AK---ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             TCGGGEEEECSCHHHHHHH----BCSCEEEEEECCS--S----HH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCceEEEECcHHHhHHh----hcCCCCEEEECCC--C----Cc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            874 799999999774332    2334777665422  1    00   12345666665  999999999997754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.49  E-value=4.1e-14  Score=125.88  Aligned_cols=124  Identities=14%  Similarity=0.153  Sum_probs=97.4

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.++|++...+...+...+                ..+|||||||+|..++.+|+..| +.+|+++|+|+.+++.|++|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~----------------~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~  105 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTR----------------AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYW  105 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHT----------------CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHH
T ss_pred             CccCHHHHHHHHHHHhhcC----------------cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            4456888777776654322                46899999999999999999875 899999999999999999999


Q ss_pred             HHhCCC-cEEEEecchhHHHHhhhcC-CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          191 QLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       191 ~~~~~~-nv~~~~~d~~~~~d~ivsn-pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +..++. +++++++|+.+.++..... .+..+|.+++..+.           ..+..+++.+.++|+|||.+++
T Consensus       106 ~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~-----------~~~~~~l~~~~~~LkpGG~lv~  168 (242)
T 3r3h_A          106 REAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK-----------TNYLNYYELALKLVTPKGLIAI  168 (242)
T ss_dssp             HHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG-----------GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh-----------HHhHHHHHHHHHhcCCCeEEEE
Confidence            999885 7999999998764433210 13567887776321           1345789999999999999998

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.49  E-value=3.7e-13  Score=122.10  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=84.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++...++ .++.++++|+.+...    .++..+|.++.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~fD~v~~  142 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS----HLETPVDLILF  142 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG----GCSSCEEEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh----hcCCCceEEEE
Confidence            568999999999999999988  67999999999999999999988887 589999999876411    14567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-.+..        ....+++++.++|+|||.+++...
T Consensus       143 ~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          143 HAVLEWVA--------DPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             ESCGGGCS--------CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             Cchhhccc--------CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            53322211        125899999999999999999653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.49  E-value=9.6e-14  Score=131.71  Aligned_cols=137  Identities=14%  Similarity=0.171  Sum_probs=101.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHh-----C-C--CcEEEEecchhHHHHhh-hcC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLS-----G-I--TNGYFIATNATSTFRSI-VAS  215 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~-----~-~--~nv~~~~~d~~~~~d~i-vsn  215 (336)
                      ++.+|||||||+|.++..+++.. |..+++|+|+|+.|++.|+++++.+     | .  .|+.|+++|+.+..+.. ...
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            35799999999999999999985 7889999999999999999998765     3 2  58999999987531110 012


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----------------------HHHHHH
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------------------EVMLRM  273 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~~~~~~  273 (336)
                      |+..+|.++....-.+..        ....+++++.++|||||++++.....                      ...+.+
T Consensus       163 ~~~~fD~V~~~~~l~~~~--------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLST--------NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF  234 (383)
T ss_dssp             CTTCEEEEEEESCGGGCS--------CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred             CCCCEEEEEEccchhcCC--------CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence            456789887764332211        13589999999999999999953111                      112677


Q ss_pred             HHHHHHcCCcceeeecc
Q 019743          274 KQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       274 ~~~l~~~g~~~~~~~~d  290 (336)
                      .+++.+.||..+++..+
T Consensus       235 ~~ll~~aGF~~v~~~~~  251 (383)
T 4fsd_A          235 RRLVAEAGFRDVRLVSV  251 (383)
T ss_dssp             HHHHHHTTCCCEEEEEE
T ss_pred             HHHHHHCCCceEEEEec
Confidence            88899999987765543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.49  E-value=5.1e-14  Score=128.69  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=84.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-------------------------------
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-------------------------------  195 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-------------------------------  195 (336)
                      +.+|||||||+|.+++.+|+.++..+++|+|+|+.|++.|++++...+.                               
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            5789999999999999999999889999999999999999998765432                               


Q ss_pred             ---------------------------CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHH
Q 019743          196 ---------------------------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVE  248 (336)
Q Consensus       196 ---------------------------~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~  248 (336)
                                                 .|+.|+++|+...-+.....++..+|.|+......|.+..  .......++++
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~--~~~~~~~~~l~  204 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN--WGDEGLKRMFR  204 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH--HHHHHHHHHHH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc--CCHHHHHHHHH
Confidence                                       3799999998643222222245678888765322121000  01113468999


Q ss_pred             HHHhcCcCCcEEEEEeC
Q 019743          249 AVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       249 ~~~~~LkpgG~l~~~~~  265 (336)
                      +++++|+|||+++++..
T Consensus       205 ~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHEEEEEEEEEECC
T ss_pred             HHHHHhCCCcEEEEecC
Confidence            99999999999999754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.49  E-value=3.3e-13  Score=116.91  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=84.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ..+|||||||+|..++.+++..| +.+++++|+|+.+++.|+++++..++. +++++++|+.+.++    ..+. +|.++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~-fD~v~  131 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA----GQRD-IDILF  131 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT----TCCS-EEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc----cCCC-CCEEE
Confidence            46899999999999999999877 889999999999999999999988875 59999999876432    1244 88887


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +....           ..+..+++.+.+.|+|||.+++.
T Consensus       132 ~~~~~-----------~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          132 MDCDV-----------FNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EETTT-----------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EcCCh-----------hhhHHHHHHHHHhcCCCeEEEEE
Confidence            76321           24568999999999999999984

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.48  E-value=1.9e-13  Score=121.67  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||+|.++..+++..+. +++|+|+|+.+++.|+++..   ..++.++++|+...     +.++..+|.++.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~-----~~~~~~fD~v~~  114 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDI-----AIEPDAYNVVLS  114 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGC-----CCCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhC-----CCCCCCeEEEEE
Confidence            3679999999999999999998643 89999999999999998765   46799999998653     224567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...-.+.        ....++++++.++|+|||.+++.+
T Consensus       115 ~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          115 SLALHYI--------ASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             ESCGGGC--------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhhh--------hhHHHHHHHHHHHcCCCcEEEEEe
Confidence            5422221        123589999999999999999964

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.48  E-value=3e-13  Score=117.78  Aligned_cols=105  Identities=10%  Similarity=0.141  Sum_probs=80.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-----cEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-----NGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-----nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      ..+|||||||+|.++..+++..|..+++|+|+|+.+++.|++++...++.     ++.++++|+...     ..++..+|
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD  104 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-----DKRFSGYD  104 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-----CGGGTTCS
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-----ccccCCCC
Confidence            56899999999999999999988899999999999999999998776654     799999998432     11234567


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++....-.+..      .....++++++.+.|+|||.++.
T Consensus       105 ~V~~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~~i~  139 (219)
T 3jwg_A          105 AATVIEVIEHLD------ENRLQAFEKVLFEFTRPQTVIVS  139 (219)
T ss_dssp             EEEEESCGGGCC------HHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             EEEEHHHHHhCC------HHHHHHHHHHHHHhhCCCEEEEE
Confidence            666543221110      01125899999999999997665

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.48  E-value=6.3e-13  Score=122.18  Aligned_cols=135  Identities=16%  Similarity=0.178  Sum_probs=101.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh----CCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~----~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..+..+++++|+|+.+++.|++++...    ...+++++.+|+.+...   ..++..+|.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~~fDv  172 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR---QTPDNTYDV  172 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---SSCTTCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH---hccCCceeE
Confidence            57899999999999999998877889999999999999999987431    23579999999876421   113567898


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCcceeee
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      |++..++|..    +...++..++++.+.+.|+|||.+++.....    .....+.+.+.+.||..+...
T Consensus       173 Ii~d~~~~~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~  238 (304)
T 3bwc_A          173 VIIDTTDPAG----PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA  238 (304)
T ss_dssp             EEEECC-------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EEECCCCccc----cchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence            8887766541    1223445799999999999999999976432    345678888889999866543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=1.8e-13  Score=123.90  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|+..+..+|+|+|+|+.|++.|++|++.++++|+.++++|+.+. ..     +..+|.+++.
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-----~~~~D~Vi~d  193 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL-----KDVADRVIMG  193 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC-----TTCEEEEEEC
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc-----cCCceEEEEC
Confidence            57899999999999999999987889999999999999999999999999999999998763 21     3457877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHHHHHHHHHHc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEY  280 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~  280 (336)
                      .|.            ...+++..+.+.|+|||.+++.+...     +......+.+.+.
T Consensus       194 ~p~------------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~  240 (272)
T 3a27_A          194 YVH------------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEK  240 (272)
T ss_dssp             CCS------------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred             Ccc------------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHH
Confidence            432            12367888899999999999855332     2344444555543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.47  E-value=9.9e-14  Score=119.96  Aligned_cols=126  Identities=7%  Similarity=-0.020  Sum_probs=86.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh------------CCCcEEEEecchhHHHHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS------------GITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~------------~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      +.+|||+|||+|..+..||++  +.+|+|+|+|+.|++.|+++....            ...+++++++|+.+. +  . 
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l-~--~-   96 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL-T--A-   96 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS-T--H-
T ss_pred             CCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC-C--c-
Confidence            578999999999999999998  679999999999999999875421            135799999998653 1  0 


Q ss_pred             CCC-CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe-CcHH----------HHHHHHHHHHHcCC
Q 019743          215 SYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEE----------VMLRMKQQFLEYGK  282 (336)
Q Consensus       215 npp-~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~-~~~~----------~~~~~~~~l~~~g~  282 (336)
                       ++ ..+|.++....-.+..      .....+++++++++|||||++++.+ ++..          ..+++.+++.+ ||
T Consensus        97 -~~~~~fD~v~~~~~l~~l~------~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf  168 (203)
T 1pjz_A           97 -RDIGHCAAFYDRAAMIALP------ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NW  168 (203)
T ss_dssp             -HHHHSEEEEEEESCGGGSC------HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SE
T ss_pred             -ccCCCEEEEEECcchhhCC------HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-Cc
Confidence             11 3578776543211110      0123478999999999999854433 2210          13556666665 77


Q ss_pred             ccee
Q 019743          283 GKLV  286 (336)
Q Consensus       283 ~~~~  286 (336)
                      ....
T Consensus       169 ~i~~  172 (203)
T 1pjz_A          169 EVTK  172 (203)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=3.4e-13  Score=115.90  Aligned_cols=124  Identities=15%  Similarity=0.103  Sum_probs=92.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.  +.+++|+|+|+.|++.|+++     ..++.++++|+.+. +    .++..+|.++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~-~----~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDL-S----DSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGG-G----GSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCccccc-c----cCCCCeEEEEeh
Confidence            468999999999999999988  56899999999999999876     34789999998763 2    245678887775


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH---------------HHHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ..-.+..      ......+++++.++|+|||.+++......               ..+.+.+++.+.||......
T Consensus       110 ~~l~~~~------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  180 (203)
T 3h2b_A          110 YSLIHMG------PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH  180 (203)
T ss_dssp             SSSTTCC------TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhHhcCC------HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence            4332211      11345899999999999999999552211               14567777888888765543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.47  E-value=2.6e-13  Score=125.00  Aligned_cols=128  Identities=13%  Similarity=0.018  Sum_probs=99.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++..+++. ++.++++|+.+.     +.++..+|.++
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~  190 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-----PFDKGAVTASW  190 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-----CCCCCCEeEEE
Confidence            35799999999999999999885 579999999999999999999998876 799999998653     12456788877


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-H---------------------HHHHHHHHHHHcCC
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-E---------------------VMLRMKQQFLEYGK  282 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-~---------------------~~~~~~~~l~~~g~  282 (336)
                      ....-.+.         ....+++++.++|||||++++.+... .                     ..+.+.+++++.||
T Consensus       191 ~~~~l~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf  261 (312)
T 3vc1_A          191 NNESTMYV---------DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRL  261 (312)
T ss_dssp             EESCGGGS---------CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTE
T ss_pred             ECCchhhC---------CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCC
Confidence            65322221         14699999999999999999854110 0                     13456788889999


Q ss_pred             cceeee
Q 019743          283 GKLVLV  288 (336)
Q Consensus       283 ~~~~~~  288 (336)
                      ..+...
T Consensus       262 ~~~~~~  267 (312)
T 3vc1_A          262 VPHTIV  267 (312)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            866543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.47  E-value=8.4e-13  Score=114.84  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=79.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||+|||+|.++..+|+..+..+|+|+|+|+.|++.+.++++..  .|+.++++|+... +.... .+..+|.++.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~-~~~~~-~~~~fD~V~~  132 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKP-WKYSG-IVEKVDLIYQ  132 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCG-GGTTT-TCCCEEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCc-hhhcc-cccceeEEEE
Confidence            357899999999999999999887789999999999988777776543  5899999988653 11011 2356888877


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..+.+.          ....++++++++|||||++++..
T Consensus       133 ~~~~~~----------~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          133 DIAQKN----------QIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccChh----------HHHHHHHHHHHHhCCCCEEEEEE
Confidence            643331          12356899999999999999964

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.47  E-value=6.9e-13  Score=120.53  Aligned_cols=167  Identities=9%  Similarity=-0.007  Sum_probs=99.4

Q ss_pred             cceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHH
Q 019743           83 PKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFL  161 (336)
Q Consensus        83 Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~  161 (336)
                      |+.+++|.. |+|..+                 -|.|+.+...+.....          .   ..+.+|||||||+|.++
T Consensus        45 ~~~~i~g~~~~~g~~~-----------------~~~~~~l~~~l~~~~~----------~---~~~~~vLDlG~G~G~~~   94 (281)
T 3bzb_A           45 VQVQTTQEHPLWTSHV-----------------WSGARALADTLCWQPE----------L---IAGKTVCELGAGAGLVS   94 (281)
T ss_dssp             EEEECC----------------------------CHHHHHHHHHHHCGG----------G---TTTCEEEETTCTTSHHH
T ss_pred             eEEEECCCCCCCCcee-----------------ecHHHHHHHHHHhcch----------h---cCCCeEEEecccccHHH
Confidence            677777755 655422                 2566666655544221          0   12568999999999999


Q ss_pred             HHHHHhCCCCeEEEEec-ChHHHHHHHHHH-----HHhCCC-----cEEEEecchhHHHHhhhcC-CCCeEEEEEeeCCC
Q 019743          162 LGMARKRKDLNFLGLEV-NGKLVTHCRDSL-----QLSGIT-----NGYFIATNATSTFRSIVAS-YPGKLILVSIQCPN  229 (336)
Q Consensus       162 ~~la~~~p~~~v~giDi-s~~~l~~a~~n~-----~~~~~~-----nv~~~~~d~~~~~d~ivsn-pp~~~d~i~~~~~d  229 (336)
                      +.+++.. ..+|+|+|+ |+.|++.|++|+     +.+++.     ++.+...|+.+..+.+... ++..+|.|+..  +
T Consensus        95 ~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~--d  171 (281)
T 3bzb_A           95 IVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLA--D  171 (281)
T ss_dssp             HHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEE--S
T ss_pred             HHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEe--C
Confidence            9999874 358999999 899999999999     555553     7888876654321111100 23456766543  2


Q ss_pred             CCCCcchhhhhcchHHHHHHHHhcCc---C--CcEEEEEeCcHH-----HHHHHHHHHHHcC-Ccceeee
Q 019743          230 PDFNRPEHRWRMVQRSLVEAVSDLLV---H--DGKVFLQSDIEE-----VMLRMKQQFLEYG-KGKLVLV  288 (336)
Q Consensus       230 p~~~~~~~~~~l~~~~~l~~~~~~Lk---p--gG~l~~~~~~~~-----~~~~~~~~l~~~g-~~~~~~~  288 (336)
                      .....      .....+++.+.++|+   |  ||.+++......     ....+.+.+.+.| |....+.
T Consensus       172 vl~~~------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          172 LLSFH------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             CCSCG------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred             cccCh------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence            21111      124689999999999   9  998777443311     1235666778889 8866554

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.47  E-value=2.4e-13  Score=121.44  Aligned_cols=128  Identities=13%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.|+++....  .+++++++|+.+.     ..|+..+|.++..
T Consensus        56 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~-----~~~~~~fD~v~~~  127 (266)
T 3ujc_A           56 NSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTK-----EFPENNFDLIYSR  127 (266)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTC-----CCCTTCEEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccC-----CCCCCcEEEEeHH
Confidence            5699999999999999999987 689999999999999999876543  6899999998653     2245678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-------HH--------------HHHHHHHHHHHcCCcce
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE--------------VMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-------~~--------------~~~~~~~~l~~~g~~~~  285 (336)
                      ..-.+.      .......+++++.++|+|||.+++....       ..              ..+.+.+++.+.||..+
T Consensus       128 ~~l~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  201 (266)
T 3ujc_A          128 DAILAL------SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNV  201 (266)
T ss_dssp             SCGGGS------CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHHhc------ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEE
Confidence            322221      1113358999999999999999995411       00              13467788888898766


Q ss_pred             eee
Q 019743          286 VLV  288 (336)
Q Consensus       286 ~~~  288 (336)
                      ...
T Consensus       202 ~~~  204 (266)
T 3ujc_A          202 VSK  204 (266)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.46  E-value=1.9e-13  Score=120.99  Aligned_cols=130  Identities=10%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...+..++.++++|+...     ..++..+|.++..
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~  153 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWIQ  153 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc-----CCCCCCEEEEEEc
Confidence            5799999999999999998886 569999999999999999998766545799999997653     1134568887766


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH--------------HHHHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------------EVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ..-.+..      ......+++++.++|+|||++++.....              ...+.+.+++.+.||..+...
T Consensus       154 ~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          154 WVIGHLT------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             SCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             chhhhCC------HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            3222211      0113589999999999999999943211              025677888888999876554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.46  E-value=4.1e-13  Score=115.89  Aligned_cols=107  Identities=11%  Similarity=0.145  Sum_probs=82.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC--CcEEEEecchhHHHHhhhcCCCCe-EEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGK-LILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~--~nv~~~~~d~~~~~d~ivsnpp~~-~d~i  223 (336)
                      +.+|||+|||+|.+++.++... ..+|+|+|+|+.|++.|++|++.+++  +++.++++|+.+...   ..++.. +|.+
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD~I  129 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK---QPQNQPHFDVV  129 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT---SCCSSCCEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH---hhccCCCCCEE
Confidence            4689999999999999877764 36899999999999999999999988  689999999876421   112456 7877


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHH--HhcCcCCcEEEEEeCc
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI  266 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~--~~~LkpgG~l~~~~~~  266 (336)
                      +++.|  + ..      .....+++.+  .++|+|||.+++.+..
T Consensus       130 ~~~~~--~-~~------~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          130 FLDPP--F-HF------NLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EECCC--S-SS------CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EECCC--C-CC------ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            76533  1 11      1234677777  6789999999997754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.46  E-value=1.3e-13  Score=121.12  Aligned_cols=134  Identities=12%  Similarity=0.156  Sum_probs=101.0

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      +|++...+...+....              .++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++     
T Consensus        31 ~~~~~~l~~~~~~~~~--------------~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----   89 (226)
T 3m33_A           31 GPDPELTFDLWLSRLL--------------TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----   89 (226)
T ss_dssp             SSCTTHHHHHHHHHHC--------------CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHhcC--------------CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----
Confidence            4777777777765432              13578999999999999999988  67999999999999999887     


Q ss_pred             CCcEEEEecchhHHHHhhhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH
Q 019743          195 ITNGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  273 (336)
Q Consensus       195 ~~nv~~~~~d~~~~~d~ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  273 (336)
                      ..+++++++|+.+.+    +.+ +..+|.++.. +++.             .+++++.++|||||.++..... ...+.+
T Consensus        90 ~~~~~~~~~d~~~~~----~~~~~~~fD~v~~~-~~~~-------------~~l~~~~~~LkpgG~l~~~~~~-~~~~~~  150 (226)
T 3m33_A           90 APHADVYEWNGKGEL----PAGLGAPFGLIVSR-RGPT-------------SVILRLPELAAPDAHFLYVGPR-LNVPEV  150 (226)
T ss_dssp             CTTSEEEECCSCSSC----CTTCCCCEEEEEEE-SCCS-------------GGGGGHHHHEEEEEEEEEEESS-SCCTHH
T ss_pred             CCCceEEEcchhhcc----CCcCCCCEEEEEeC-CCHH-------------HHHHHHHHHcCCCcEEEEeCCc-CCHHHH
Confidence            357999999985421    123 5568887765 3332             6778899999999999843332 234567


Q ss_pred             HHHHHHcCCcceeee
Q 019743          274 KQQFLEYGKGKLVLV  288 (336)
Q Consensus       274 ~~~l~~~g~~~~~~~  288 (336)
                      .+.+.+.||......
T Consensus       151 ~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          151 PERLAAVGWDIVAED  165 (226)
T ss_dssp             HHHHHHTTCEEEEEE
T ss_pred             HHHHHHCCCeEEEEE
Confidence            788899999876543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.46  E-value=8.4e-13  Score=120.88  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=94.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH--hC--CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG--ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~--~~--~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..+..+++++|+|+.+++.|++++..  .+  ..+++++++|+.+.+.    .++..+|.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~----~~~~~fD~  166 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----KFKNEFDV  166 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----GCSSCEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----hCCCCceE
Confidence            5689999999999999999887789999999999999999999865  22  3579999999876432    13456888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcCCcce
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g~~~~  285 (336)
                      |++..++|+..   ....+...++++.+.+.|+|||.+++.+..    ......+.+.+.+. |..+
T Consensus       167 Ii~d~~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  229 (296)
T 1inl_A          167 IIIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT  229 (296)
T ss_dssp             EEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred             EEEcCCCcccC---chhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCce
Confidence            88876666321   122345689999999999999999997543    23344555566655 4443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.46  E-value=3.7e-13  Score=118.83  Aligned_cols=128  Identities=13%  Similarity=-0.007  Sum_probs=91.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe-
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI-  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~-  225 (336)
                      +.+|||||||+|.++..+++.. ..+++|+|+|+.|++.|++++...+ .++.++++|+.+...   ..++.++|.++. 
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~---~~~~~~fD~V~~d  135 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---TLPDGHFDGILYD  135 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG---GSCTTCEEEEEEC
T ss_pred             CCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc---ccCCCceEEEEEC
Confidence            5689999999999999997654 3489999999999999999987665 679999999876421   225567898876 


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH---------------HHHHHHHHHHcCCcc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV---------------MLRMKQQFLEYGKGK  284 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------------~~~~~~~l~~~g~~~  284 (336)
                      .+.. ..   +.......+.++++++++|||||++++.. ....               .+.....+.+.||..
T Consensus       136 ~~~~-~~---~~~~~~~~~~~l~~~~r~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          136 TYPL-SE---ETWHTHQFNFIKNHAFRLLKPGGVLTYCN-LTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCC-BG---GGTTTHHHHHHHHTHHHHEEEEEEEEECC-HHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             Cccc-ch---hhhhhhhHHHHHHHHHHhcCCCeEEEEEe-cCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            3322 10   00011123578999999999999998732 1111               133455677889874

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.46  E-value=5.2e-13  Score=122.25  Aligned_cols=105  Identities=12%  Similarity=0.105  Sum_probs=82.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.++ .+++|+|+|+.+++.|++++...++. ++.++++|+.+.        +..+|.++.
T Consensus        73 ~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~~  143 (302)
T 3hem_A           73 GMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--------DEPVDRIVS  143 (302)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--------CCCCSEEEE
T ss_pred             cCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--------CCCccEEEE
Confidence            57999999999999999999875 89999999999999999999988876 799999998653        334565554


Q ss_pred             e-----CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 Q-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~-----~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .     +++|+...    ....+..+++++.++|||||++++.+
T Consensus       144 ~~~~~~~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          144 LGAFEHFADGAGDA----GFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             ESCGGGTTCCSSCC----CTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             cchHHhcCcccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            3     33432000    11234689999999999999999954

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.46  E-value=1.4e-13  Score=124.68  Aligned_cols=133  Identities=14%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..+..+|+..++ .+++|+|+|+.+++.+++|++++++.|+.++++|+...... +..++..+|.+++
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~~fD~Vl~  162 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY-LLKNEIFFDKILL  162 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HHHTTCCEEEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh-hhhccccCCEEEE
Confidence            578999999999999999998766 89999999999999999999999988999999998764111 1001334566555


Q ss_pred             eCCCCCCC--------cch--hhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHc
Q 019743          226 QCPNPDFN--------RPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEY  280 (336)
Q Consensus       226 ~~~dp~~~--------~~~--~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~  280 (336)
                      ..|-....        ..+  ......+.++++.+.+.|||||++++.+...   +..+.+...+.++
T Consensus       163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~  230 (274)
T 3ajd_A          163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR  230 (274)
T ss_dssp             EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHC
T ss_pred             cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhC
Confidence            42211000        000  0011245789999999999999999966321   2223445555554

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.46  E-value=8.4e-13  Score=116.49  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=96.8

Q ss_pred             ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHH
Q 019743          111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n  189 (336)
                      .+.++|.+...+...+...                +..+|||||||+|..++.+|+..| +.+++++|+|+.+++.|+++
T Consensus        53 ~~~~~~~~~~~l~~l~~~~----------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~  116 (232)
T 3cbg_A           53 PMQISPEQAQFLGLLISLT----------------GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY  116 (232)
T ss_dssp             GGSCCHHHHHHHHHHHHHH----------------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred             ccCcCHHHHHHHHHHHHhc----------------CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            3556788877776654422                246899999999999999999876 78999999999999999999


Q ss_pred             HHHhCCC-cEEEEecchhHHHHhhhcCCC--CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          190 LQLSGIT-NGYFIATNATSTFRSIVASYP--GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       190 ~~~~~~~-nv~~~~~d~~~~~d~ivsnpp--~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ++..++. ++.++++|+.+.++.... ++  ..+|.+++..+.           ..+..+++.+.+.|+|||.+++.
T Consensus       117 ~~~~g~~~~i~~~~~d~~~~l~~l~~-~~~~~~fD~V~~d~~~-----------~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          117 WQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADK-----------RNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             HHHHTCGGGEEEEESCHHHHHHHHHT-SSSCCCEEEEEECSCG-----------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHcCCCCcEEEEEcCHHHHHHHHHh-cCCCCCcCEEEECCCH-----------HHHHHHHHHHHHHcCCCeEEEEe
Confidence            9988875 599999999775443221 12  567877765321           13568999999999999999984

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.46  E-value=1.9e-13  Score=125.45  Aligned_cols=107  Identities=10%  Similarity=-0.007  Sum_probs=83.1

Q ss_pred             CCeEEEEeccccHHHHHHH-HhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la-~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||||||+|.++..+| ...|+.+++|+|+|+.+++.|++++...+..+ ++++++|+.+.     .. +..+|.++
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~fD~v~  192 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-----DT-REGYDLLT  192 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-----CC-CSCEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-----Cc-cCCeEEEE
Confidence            6789999999999999997 56789999999999999999999998877754 99999998763     11 36678776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ....-.+..     .......+++++.++|+|||.+++..
T Consensus       193 ~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          193 SNGLNIYEP-----DDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             CCSSGGGCC-----CHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ECChhhhcC-----CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            543221110     11123468999999999999999854

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.45  E-value=5.8e-13  Score=117.81  Aligned_cols=103  Identities=23%  Similarity=0.324  Sum_probs=83.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..+|||+|||+|.++..+++..  .+++|+|+|+.+++.|++++..++..++.++++|+...     ..++..+|.++.
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~~   93 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC   93 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-----CCCCCcEEEEEE
Confidence            36799999999999999999886  48999999999999999999988888999999998652     224567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+..        ....+++++.++|+|||++++.
T Consensus        94 ~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           94 RYAAHHFS--------DVRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             ESCGGGCS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhcc--------CHHHHHHHHHHHcCCCcEEEEE
Confidence            53222211        2358999999999999999984

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.45  E-value=6e-13  Score=114.91  Aligned_cols=106  Identities=16%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.++++. ..+|+|+|+|+.|++.|++|++.+++.+++++++|+.+.+    ..++..+|.+++.
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~----~~~~~~fD~V~~~  129 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----AQKGTPHNIVFVD  129 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----SSCCCCEEEEEEC
T ss_pred             CCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH----hhcCCCCCEEEEC
Confidence            5689999999999999988774 3589999999999999999999998889999999987642    2234567877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHh--cCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~--~LkpgG~l~~~~~~  266 (336)
                      .|  + ..      .....+++.+.+  +|+|||.+++.+..
T Consensus       130 ~p--~-~~------~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          130 PP--F-RR------GLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             CS--S-ST------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CC--C-CC------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            33  1 11      123466677754  59999999997754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.45  E-value=8.4e-13  Score=116.23  Aligned_cols=104  Identities=12%  Similarity=0.168  Sum_probs=86.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||+|||+|.++..+|+..|..+++++|+|+.+++.|++++...+.. ++.++++|+.+.+....  .+..+|.+++
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~  132 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE--LYPLFDVLFI  132 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT--TSCCEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc--cCCCccEEEE
Confidence            56899999999999999999999899999999999999999999998875 69999999876433221  1345788777


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..+.+           .+..+++.+.+.|+|||.+++.
T Consensus       133 ~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          133 DAAKG-----------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EGGGS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCHH-----------HHHHHHHHHHHHcCCCeEEEEE
Confidence            54321           3468999999999999999985

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.44  E-value=1.3e-12  Score=114.42  Aligned_cols=106  Identities=16%  Similarity=0.119  Sum_probs=85.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcC-CCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVAS-YPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsn-pp~~~d~i  223 (336)
                      ..+|||||||+|.+++.+|+..| ..+++++|+|+.+++.|+++++.++. .+++++++|+.+.++.+... .+..+|.+
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            56899999999999999999876 78999999999999999999998887 57999999997754433211 11457877


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ++..+.           ..+..+++.+.+.|+|||.+++.
T Consensus       150 ~~d~~~-----------~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          150 VVDADK-----------ENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EECSCS-----------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCH-----------HHHHHHHHHHHHHcCCCeEEEEE
Confidence            765321           23468999999999999999983

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=4e-13  Score=118.50  Aligned_cols=124  Identities=13%  Similarity=0.111  Sum_probs=93.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++.  +.+++|+|+|+.+++.|+++.   ...++.++++|+.+.     +.++..+|.++..
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~  123 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSL-----PFENEQFEAIMAI  123 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBC-----SSCTTCEEEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcC-----CCCCCCccEEEEc
Confidence            579999999999999999988  679999999999999998874   336799999998653     2246678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------------------HHHHHHHHHHHHcCCcce
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------------------EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------~~~~~~~~~l~~~g~~~~  285 (336)
                      ..-.+..        ....+++++.++|+|||.+++.+...                     .....+.+++++.||..+
T Consensus       124 ~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  195 (242)
T 3l8d_A          124 NSLEWTE--------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV  195 (242)
T ss_dssp             SCTTSSS--------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred             ChHhhcc--------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence            4333221        22488999999999999999965211                     012457778888888876


Q ss_pred             eee
Q 019743          286 VLV  288 (336)
Q Consensus       286 ~~~  288 (336)
                      ...
T Consensus       196 ~~~  198 (242)
T 3l8d_A          196 DGI  198 (242)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.43  E-value=2e-12  Score=117.11  Aligned_cols=131  Identities=11%  Similarity=0.153  Sum_probs=98.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CC--CcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~--~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  +.  .+++++.+|+.+.+.    .++..+|.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~----~~~~~fD~  151 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA----KSENQYDV  151 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH----TCCSCEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----hCCCCeeE
Confidence            57899999999999999998777789999999999999999998642  23  579999999976532    23456888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcCCccee
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g~~~~~  286 (336)
                      |++..++|+..    ...+...++++.+.+.|+|||.+++.+..    ......+.+.+.+. |..+.
T Consensus       152 Ii~d~~~~~~~----~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  214 (275)
T 1iy9_A          152 IMVDSTEPVGP----AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITK  214 (275)
T ss_dssp             EEESCSSCCSC----CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred             EEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeE
Confidence            88876665421    12244568999999999999999997543    23345566666665 55443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.43  E-value=1.7e-12  Score=116.71  Aligned_cols=127  Identities=14%  Similarity=0.119  Sum_probs=96.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...++. ++.++++|+.+.     +.++..+|.++.
T Consensus        62 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  135 (273)
T 3bus_A           62 GDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-----PFEDASFDAVWA  135 (273)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CSCTTCEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-----CCCCCCccEEEE
Confidence            5799999999999999999876 689999999999999999999888875 699999998653     224567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HH-------------------HHHHHHHHHHHcC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EE-------------------VMLRMKQQFLEYG  281 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~-------------------~~~~~~~~l~~~g  281 (336)
                      ...-.+..        ....+++++.++|+|||++++....     ..                   ..+.+.+++++.|
T Consensus       136 ~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  207 (273)
T 3bus_A          136 LESLHHMP--------DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE  207 (273)
T ss_dssp             ESCTTTSS--------CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred             echhhhCC--------CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence            53332211        1258999999999999999984411     00                   0145667778888


Q ss_pred             Ccceee
Q 019743          282 KGKLVL  287 (336)
Q Consensus       282 ~~~~~~  287 (336)
                      |..+..
T Consensus       208 f~~~~~  213 (273)
T 3bus_A          208 LVVTST  213 (273)
T ss_dssp             CEEEEE
T ss_pred             CeEEEE
Confidence            876544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.43  E-value=1.3e-12  Score=115.63  Aligned_cols=125  Identities=15%  Similarity=0.164  Sum_probs=95.4

Q ss_pred             ccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHH
Q 019743          113 DIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       113 digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~  191 (336)
                      .+.|.+...+...+...                +..+|||||||+|.++..+++..| ..+++++|+++.+++.|++++.
T Consensus        43 ~~~~~~~~~l~~l~~~~----------------~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~  106 (239)
T 2hnk_A           43 QISPEEGQFLNILTKIS----------------GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK  106 (239)
T ss_dssp             SCCHHHHHHHHHHHHHH----------------TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhh----------------CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence            34577777666655422                256899999999999999999987 7899999999999999999999


Q ss_pred             HhCCCc-EEEEecchhHHHHhhhc----------CCC--CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc
Q 019743          192 LSGITN-GYFIATNATSTFRSIVA----------SYP--GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG  258 (336)
Q Consensus       192 ~~~~~n-v~~~~~d~~~~~d~ivs----------npp--~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG  258 (336)
                      ..+..+ +.++++|+.+.++....          .+.  ..+|.+++....           ..+..+++.+.+.|+|||
T Consensus       107 ~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~-----------~~~~~~l~~~~~~L~pgG  175 (239)
T 2hnk_A          107 ENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK-----------ENYPNYYPLILKLLKPGG  175 (239)
T ss_dssp             HTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG-----------GGHHHHHHHHHHHEEEEE
T ss_pred             HcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH-----------HHHHHHHHHHHHHcCCCe
Confidence            888865 99999998764332211          011  457887765321           134588999999999999


Q ss_pred             EEEEEe
Q 019743          259 KVFLQS  264 (336)
Q Consensus       259 ~l~~~~  264 (336)
                      .+++..
T Consensus       176 ~lv~~~  181 (239)
T 2hnk_A          176 LLIADN  181 (239)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999954

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.43  E-value=5.8e-13  Score=117.48  Aligned_cols=98  Identities=15%  Similarity=0.260  Sum_probs=77.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++..+  +++|+|+|+.+++.|+++...    ++.++++|+.+.    .  ++..+|.++..
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~----~--~~~~fD~v~~~  110 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA----Q--LPRRYDNIVLT  110 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC----C--CSSCEEEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc----C--cCCcccEEEEh
Confidence            46899999999999999998864  799999999999999887542    799999998653    1  46678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHH-hcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~-~~LkpgG~l~~~~  264 (336)
                      ..-.+..        ....+++++. ++|||||++++.+
T Consensus       111 ~~l~~~~--------~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          111 HVLEHID--------DPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             SCGGGCS--------SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hHHHhhc--------CHHHHHHHHHHHhcCCCCEEEEEc
Confidence            3222110        1258999999 9999999999966

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.43  E-value=7.2e-13  Score=120.34  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=83.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||||||+|.++..+++.+|. .+++|+|+|+.+++.|++++...+. |++++++|+.+.     . .+..+|.++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~v~   94 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEI-----E-LNDKYDIAI   94 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTC-----C-CSSCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhc-----C-cCCCeeEEE
Confidence            3579999999999999999999884 8999999999999999999876654 899999998752     1 134688877


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ....-.+.        .....+++++.++|+|||++++..
T Consensus        95 ~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           95 CHAFLLHM--------TTPETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             EESCGGGC--------SSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECChhhcC--------CCHHHHHHHHHHHcCCCCEEEEEe
Confidence            65422211        123589999999999999999854

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.43  E-value=2.5e-13  Score=126.28  Aligned_cols=107  Identities=11%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHH----------HHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATST----------FRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~----------~d~ivs  214 (336)
                      +.+|||+|||+|.+++.+|+..  .+|+|+|+|+.|++.|++|++.+++++  ++++++|+.+.          ||.|++
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            4689999999999999999874  499999999999999999999999874  99999998763          344555


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      |||+.-.     .+..  ..  ......+..+++.+.++|+|||.+++.+
T Consensus       232 dPP~~~~-----~~~~--~~--~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          232 DPPKFGR-----GTHG--EV--WQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             CCCSEEE-----CTTC--CE--EEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCccccC-----CchH--HH--HHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            5553110     0000  00  0011235689999999999999988755

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.42  E-value=3.8e-12  Score=117.49  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH--hC---CCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG---ITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~--~~---~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      ..+|||||||+|.++..+++..|..+++++|+|+.+++.|++++..  .+   ..+++++.+|+.+.+..    ++..+|
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  153 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEERYD  153 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----cCCCcc
Confidence            5689999999999999999887788999999999999999999865  22   35799999999775332    356689


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HHHHHHHHHHHHHcCCcce
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~l~~~g~~~~  285 (336)
                      .|++..++++. ...+...++..++++.+.+.|+|||.+++.+..     .+....+.+.+.+. |..+
T Consensus       154 ~Ii~d~~~~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v  220 (314)
T 1uir_A          154 VVIIDLTDPVG-EDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYV  220 (314)
T ss_dssp             EEEEECCCCBS-TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEE
T ss_pred             EEEECCCCccc-ccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCce
Confidence            88888776651 001123355789999999999999999996432     12344555555554 4433

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.42  E-value=2.9e-12  Score=116.43  Aligned_cols=127  Identities=10%  Similarity=0.120  Sum_probs=93.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-----------CCCcEEEEecchhHHHHhhhcC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVAS  215 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-----------~~~nv~~~~~d~~~~~d~ivsn  215 (336)
                      ..+|||||||+|.++..+++. +..+++++|+|+.+++.|++++ ..           ...+++++.+|+.+.+..    
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~----  149 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  149 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc----
Confidence            568999999999999999988 8889999999999999999988 33           235799999998765332    


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcCCcce
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g~~~~  285 (336)
                       +..+|.|++..++|+..    ...++..++++.+.+.|+|||.+++.+..    ......+.+.+.+. |...
T Consensus       150 -~~~fD~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v  217 (281)
T 1mjf_A          150 -NRGFDVIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRV  217 (281)
T ss_dssp             -CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEE
T ss_pred             -cCCeeEEEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCce
Confidence             34578888877766421    12244679999999999999999996532    23344455555544 4433

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.42  E-value=1.4e-12  Score=120.41  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..+..+|+..+ ..+++|+|+|+.+++.+++|++++++.|+.++++|+... +.    .+..+|.|++
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~-~~----~~~~fD~Il~  193 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GE----LNVEFDKILL  193 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-GG----GCCCEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc-cc----ccccCCEEEE
Confidence            57899999999999999999864 589999999999999999999999998999999998763 11    1335677666


Q ss_pred             eCCC---------CCCC---cchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcCCcce
Q 019743          226 QCPN---------PDFN---RPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       226 ~~~d---------p~~~---~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g~~~~  285 (336)
                      ..|-         |..+   ..+.  .....+.++++.+.++|||||++++.+..   .+....+...+++++|...
T Consensus       194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~  270 (315)
T 1ixk_A          194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL  270 (315)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred             eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEe
Confidence            5331         1000   0000  01123479999999999999999996532   2223345666777776543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.41  E-value=1.1e-12  Score=119.56  Aligned_cols=127  Identities=13%  Similarity=0.024  Sum_probs=96.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.++..+++.+ +.+++|+|+|+.+++.|++++...++ .++.++++|+.+.     +.++..+|.++.
T Consensus        83 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  156 (297)
T 2o57_A           83 QAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIWS  156 (297)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-----CCCCCCEeEEEe
Confidence            5799999999999999999886 56999999999999999999988887 4799999998653     224567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----------H-----------HHHHHHHHHHHcCCcc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------E-----------VMLRMKQQFLEYGKGK  284 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----------~-----------~~~~~~~~l~~~g~~~  284 (336)
                      ...-.+..        ....+++++.++|||||++++.....          .           ....+.+++.+.||..
T Consensus       157 ~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  228 (297)
T 2o57_A          157 QDAFLHSP--------DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVT  228 (297)
T ss_dssp             ESCGGGCS--------CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEE
T ss_pred             cchhhhcC--------CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeE
Confidence            53222211        13589999999999999999953110          0           1234667888899987


Q ss_pred             eee
Q 019743          285 LVL  287 (336)
Q Consensus       285 ~~~  287 (336)
                      +..
T Consensus       229 ~~~  231 (297)
T 2o57_A          229 LRT  231 (297)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.41  E-value=1.6e-12  Score=112.15  Aligned_cols=120  Identities=14%  Similarity=0.077  Sum_probs=88.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---HHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---~d~ivsnpp~~~d~i  223 (336)
                      +.+|||+|||+|.+++.+++.. ..+++|+|+|+.+++.|++|+..+++ ++.++++|+.+.   ||.+++||||.    
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~D~v~~~~p~~----  123 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFNSRVDIVIMNPPFG----  123 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCCCCCSEEEECCCCS----
T ss_pred             cCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcCCCCCEEEEcCCCc----
Confidence            5689999999999999999874 34899999999999999999988877 899999998763   45555555541    


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                             ..  .    +.....+++.+.+.|  ||.+.+........+.+.+.+.+.||....+
T Consensus       124 -------~~--~----~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  172 (207)
T 1wy7_A          124 -------SQ--R----KHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR  172 (207)
T ss_dssp             -------SS--S----TTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred             -------cc--c----CCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence                   10  0    012357888888888  5544443334455677888888899865443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.41  E-value=4.2e-13  Score=126.81  Aligned_cols=130  Identities=9%  Similarity=0.050  Sum_probs=95.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+| |+|.+++.+++..|..+++|+|+|+.|++.|++|++.+++.|++++++|+.+.++.   ..+..+|.++++
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~---~~~~~fD~Vi~~  248 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD---YALHKFDTFITD  248 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT---TTSSCBSEEEEC
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh---hccCCccEEEEC
Confidence            56899999 99999999999988889999999999999999999999988999999998652110   012356766655


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCc-EEEEEeCc--HH--HHHHHHHHHH-HcCCcceeeec
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDI--EE--VMLRMKQQFL-EYGKGKLVLVQ  289 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG-~l~~~~~~--~~--~~~~~~~~l~-~~g~~~~~~~~  289 (336)
                      .|-..      ..   ...+++++.+.|+||| .+++.+..  ..  ....+.+.+. ..|+.......
T Consensus       249 ~p~~~------~~---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  308 (373)
T 2qm3_A          249 PPETL------EA---IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDIIR  308 (373)
T ss_dssp             CCSSH------HH---HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred             CCCch------HH---HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhhh
Confidence            32111      11   3689999999999999 44665543  11  1256667776 77876544443

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.40  E-value=5e-13  Score=119.91  Aligned_cols=96  Identities=11%  Similarity=0.046  Sum_probs=77.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..|++..  .+|+|+|+|+.|++.|++      ..++.++++|+.+.     +.|+.++|.|+..
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~-----~~~~~sfD~v~~~  106 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDT-----GLPPASVDVAIAA  106 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC------CTTEEEEECCTTCC-----CCCSSCEEEEEEC
T ss_pred             CCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh------cCCceeehhhhhhh-----cccCCcccEEEEe
Confidence            5689999999999999999874  689999999999988753      36899999998753     2367789988775


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.|.         ..+++++++.++|||||.|.+..
T Consensus       107 ~~~h~~---------~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          107 QAMHWF---------DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             SCCTTC---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eehhHh---------hHHHHHHHHHHHcCCCCEEEEEE
Confidence            443332         23589999999999999998843

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.1e-12  Score=119.94  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=84.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHh--CCCcEEEEecchhHHHHhhhcC----CCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLS--GITNGYFIATNATSTFRSIVAS----YPG  218 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~--~~~nv~~~~~d~~~~~d~ivsn----pp~  218 (336)
                      +..+|||||||+|.++..+++.+ +..+++|+|+|+.+++.|+++++..  ...+++++++|+.+. +  +..    ++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~~~~~~  112 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF-K--FLGADSVDKQ  112 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC-G--GGCTTTTTSS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC-C--ccccccccCC
Confidence            36799999999999999999886 8999999999999999999999876  246899999998763 1  211    126


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .+|.++....-.+.         ....+++++.++|+|||.+++
T Consensus       113 ~fD~V~~~~~l~~~---------~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAHWF---------DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGGGS---------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHh---------CHHHHHHHHHHhcCCCcEEEE
Confidence            78988776433332         345899999999999999988

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.40  E-value=3.8e-12  Score=120.65  Aligned_cols=133  Identities=15%  Similarity=0.104  Sum_probs=95.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+.+++.|++|++.++++|++++++|+.+.+..... ++..+|.+++.
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~-~~~~fD~Ii~d  286 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-EGERFDLVVLD  286 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-TTCCEEEEEEC
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh-cCCCeeEEEEC
Confidence            468999999999999999988  678999999999999999999999998899999999875433221 23457777664


Q ss_pred             CCCCCCCcch--hhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~g~~  283 (336)
                      .|- +.....  ......+.+++..+.+.|+|||.+++.+...     ...+.+.+.+.+.|..
T Consensus       287 pP~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  349 (382)
T 1wxx_A          287 PPA-FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL  349 (382)
T ss_dssp             CCC-SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCC-CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            221 111000  1111235789999999999999999976432     1233445566666644

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.40  E-value=9.9e-13  Score=116.82  Aligned_cols=128  Identities=17%  Similarity=0.170  Sum_probs=94.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...  .++.++++|+...     ..++..+|.++..
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~-----~~~~~~fD~v~~~  165 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA-----TLPPNTYDLIVIQ  165 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC-----CCCSSCEEEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHC-----CCCCCCeEEEEEc
Confidence            5789999999999999999886 567999999999999999987543  6799999998653     2245678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH---------------HHHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ..-.+..      ......+++++.++|+|||.+++......               ..+.+.+++.+.||..+...
T Consensus       166 ~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  236 (254)
T 1xtp_A          166 WTAIYLT------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             SCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             chhhhCC------HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence            4222110      01235899999999999999999652110               13567777788888766543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.40  E-value=2.5e-12  Score=109.76  Aligned_cols=104  Identities=11%  Similarity=0.091  Sum_probs=82.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|++++...+.+++.++++|+.+.     . .+..+|.++..
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~D~v~~~  104 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL-----T-FDRQYDFILST  104 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC-----C-CCCCEEEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC-----C-CCCCceEEEEc
Confidence            569999999999999999988  679999999999999999999988888899999998653     1 14457877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+..      ......+++++.+.|+|||.+++.+
T Consensus       105 ~~l~~~~------~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          105 VVLMFLE------AKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             SCGGGSC------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhhCC------HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            3322211      1134689999999999999987743

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.40  E-value=1.6e-12  Score=119.46  Aligned_cols=133  Identities=9%  Similarity=0.021  Sum_probs=97.5

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  227 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~  227 (336)
                      .+|||||||+|.++..+++.+|+.+++++|+++.+++.|++++......+++++++|+.+.+.   ..++..+|.|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~---~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE---SFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH---TCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHh---hccCCCCCEEEECC
Confidence            489999999999999999989999999999999999999998754434679999999987532   22456789888765


Q ss_pred             CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-H--HHHHHHHHHHHHcCCcceeee
Q 019743          228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-E--EVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~--~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      .+++..    ...+...+|++.+++.|+|||.+++.... .  .....+.+.+.+. |..+...
T Consensus       168 ~~~~~~----~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~  226 (317)
T 3gjy_A          168 FAGAIT----PQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVI  226 (317)
T ss_dssp             STTSCC----CGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEE
T ss_pred             CCcccc----chhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEE
Confidence            555421    12245679999999999999999986532 1  2233444444443 4444443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.40  E-value=8.8e-13  Score=120.55  Aligned_cols=108  Identities=17%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC---CcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~---~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++...+.   .++.++++|+.+.     . .+..+|.+
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v  154 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-----A-LDKRFGTV  154 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-----C-CSCCEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-----C-cCCCcCEE
Confidence            348999999999999999988  57899999999999999999887654   5799999998753     1 14567866


Q ss_pred             EeeCC-CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          224 SIQCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       224 ~~~~~-dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      ++.+. -.+.      .......+++++.++|+|||++++.+....
T Consensus       155 ~~~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          155 VISSGSINEL------DEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             EECHHHHTTS------CHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             EECCcccccC------CHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            54211 0110      011235899999999999999999775443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.39  E-value=1e-12  Score=114.23  Aligned_cols=149  Identities=11%  Similarity=0.058  Sum_probs=98.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++..    .++.++++|+.+.     ..+ ..+|.++..
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~-----~~~-~~fD~v~~~  113 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSF-----EVP-TSIDTIVST  113 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSC-----CCC-SCCSEEEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhc-----CCC-CCeEEEEEC
Confidence            568999999999999999988  6799999999999999988764    5788999998653     112 567777665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---CcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  303 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~  303 (336)
                      ..-.+..      ......+++++.++|||||.+++..   ............+...+|........             
T Consensus       114 ~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  174 (220)
T 3hnr_A          114 YAFHHLT------DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQ-------------  174 (220)
T ss_dssp             SCGGGSC------HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred             cchhcCC------hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcc-------------
Confidence            3222211      0111358999999999999999963   22333334444455555542111000             


Q ss_pred             CCCCCCCCHHHHHHHHcCCCeEE
Q 019743          304 ENSFGVRSDWEQHVIDRGAPMYR  326 (336)
Q Consensus       304 ~~~~~~~t~~e~~~~~~G~~i~~  326 (336)
                      ........+++..+.+.|+.+..
T Consensus       175 ~~~~~~~~~~~~~l~~aGf~v~~  197 (220)
T 3hnr_A          175 TEYYTRIPVMQTIFENNGFHVTF  197 (220)
T ss_dssp             HSCCCBHHHHHHHHHHTTEEEEE
T ss_pred             hhhcCCHHHHHHHHHHCCCEEEE
Confidence            00112335777888888876644

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.39  E-value=2.5e-12  Score=116.60  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=79.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...+. .++.++++|+.+.       | ..+|.++.
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~-~~fD~v~~  135 (287)
T 1kpg_A           65 GMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-------D-EPVDRIVS  135 (287)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-------C-CCCSEEEE
T ss_pred             cCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-------C-CCeeEEEE
Confidence            5689999999999999999766 45999999999999999999987776 4799999998542       2 45676655


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...-.+.      .......+++++.++|||||.+++..
T Consensus       136 ~~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          136 IGAFEHF------GHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             ESCGGGT------CTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eCchhhc------ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4221111      00123589999999999999999844

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.39  E-value=1.3e-12  Score=113.01  Aligned_cols=122  Identities=11%  Similarity=0.047  Sum_probs=91.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++.      ++.+..+|+...     . ++..+|.++..
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~-----~-~~~~fD~v~~~  109 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQL-----D-AIDAYDAVWAH  109 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGC-----C-CCSCEEEEEEC
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccC-----C-CCCcEEEEEec
Confidence            568999999999999999988  679999999999999999886      456778887653     1 45678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH--------------HHHHHHHHHHHcC-Ccceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VMLRMKQQFLEYG-KGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~l~~~g-~~~~~~~  288 (336)
                      ..-.+.      .......+++++.++|+|||++++......              ..+.+.+++++.| |..+...
T Consensus       110 ~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          110 ACLLHV------PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE  180 (211)
T ss_dssp             SCGGGS------CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred             Cchhhc------CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence            322211      111235899999999999999999542211              2567888888899 9877654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.39  E-value=2.7e-12  Score=121.73  Aligned_cols=135  Identities=10%  Similarity=0.090  Sum_probs=93.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||+|.+++.+|+.. ..+|+|+|+|+.|++.|++|++.++++  |++|+++|+.+.+..... ....+|.++
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~-~~~~fD~Ii  290 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDIII  290 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH-hCCCccEEE
Confidence            5689999999999999999863 348999999999999999999999987  899999999775332211 123466665


Q ss_pred             eeCCCCCCC-cchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----HHHHHHHHHHHcCCc
Q 019743          225 IQCPNPDFN-RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQFLEYGKG  283 (336)
Q Consensus       225 ~~~~dp~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~l~~~g~~  283 (336)
                      +..|--... .........+.+++..+.+.|+|||.+++.+....     ..+.+.+.+...|..
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            542210000 00011112456889999999999999999775432     222344445556665

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.39  E-value=1.5e-12  Score=114.05  Aligned_cols=106  Identities=18%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-----cEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-----NGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-----nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...+..     ++.++++|+...     ..++..+|
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  103 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-----SFHDSSFD  103 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-----CSCTTCEE
T ss_pred             CCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-----CCCCCcee
Confidence            578999999999999999988  679999999999999999998766652     689999998653     22456678


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .++....-.+...     ......+++++.+.|+|||.+++.+
T Consensus       104 ~v~~~~~l~~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          104 FAVMQAFLTSVPD-----PKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEESCGGGCCC-----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhcCCC-----HHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            7776532221110     0122479999999999999999853

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.39  E-value=1.1e-12  Score=117.28  Aligned_cols=105  Identities=12%  Similarity=0.010  Sum_probs=77.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH-----------------hCCCcEEEEecchhHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-----------------SGITNGYFIATNATSTF  209 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~-----------------~~~~nv~~~~~d~~~~~  209 (336)
                      +.+|||+|||+|..+..||+.  +.+|+|+|+|+.|++.|+++...                 ....+++++++|+.+. 
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l-  145 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL-  145 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG-
T ss_pred             CCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC-
Confidence            578999999999999999988  67999999999999999876531                 0125799999998764 


Q ss_pred             HhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          210 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       210 d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +  .. ....+|.|+....-.+...      .....+++++.++|||||++++.
T Consensus       146 ~--~~-~~~~FD~V~~~~~l~~l~~------~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 P--RA-NIGKFDRIWDRGALVAINP------GDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             G--GG-CCCCEEEEEESSSTTTSCG------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             C--cc-cCCCEEEEEEhhhhhhCCH------HHHHHHHHHHHHHcCCCeEEEEE
Confidence            1  11 1256888775422221110      12357899999999999999754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.39  E-value=3.7e-12  Score=117.00  Aligned_cols=110  Identities=14%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH--hC--CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG--ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~--~~--~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..|..+++++|+|+.+++.|++++..  .+  ..+++++++|+.+.+..    ++..+|.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~----~~~~fD~  171 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDAFDV  171 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSCEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh----CCCCceE
Confidence            5689999999999999999887889999999999999999999865  23  35799999999765332    3566888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      |++..++|+..    ...+...++++.+.+.|+|||.+++..
T Consensus       172 Ii~d~~~~~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          172 IITDSSDPMGP----AESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEECC---------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCCCCc----chhhhHHHHHHHHHhccCCCeEEEEec
Confidence            88877665421    112445689999999999999999976

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.39  E-value=3.1e-12  Score=116.21  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=84.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++. +..+++|+|+|+.+++.|++++...+. .++.++++|+.+. +  +. ++..+|.++.
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~-~~~~fD~v~~  139 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-H--MD-LGKEFDVISS  139 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-C--CC-CSSCEEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-c--cC-CCCCcCEEEE
Confidence            579999999999999998876 356999999999999999999887765 4799999998653 1  10 3556888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+.-.+.    .........+++++.++|+|||.+++.+..
T Consensus       140 ~~~l~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          140 QFSFHYA----FSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             ESCGGGG----GSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             Cchhhhh----cCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            5422110    011122468999999999999999997654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.38  E-value=4.5e-12  Score=111.69  Aligned_cols=129  Identities=13%  Similarity=0.140  Sum_probs=89.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||+|||+|.++..+|+. .|+.+|+|+|+|+.|++...+.++..  .|+.++++|+... +. ....+..+|.++
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~-~~-~~~~~~~~D~I~  151 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFP-QS-YKSVVENVDVLY  151 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCG-GG-TTTTCCCEEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccc-hh-hhccccceEEEE
Confidence            3679999999999999999987 57889999999999987665555443  6899999998653 11 011134688888


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc---------HHHHHHHHHHHHHcCCcceeee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ...+.|.          ..+.+...+.+.|||||++++....         ....+...+.++++||...+..
T Consensus       152 ~d~a~~~----------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~  214 (232)
T 3id6_C          152 VDIAQPD----------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQII  214 (232)
T ss_dssp             ECCCCTT----------HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEE
T ss_pred             ecCCChh----------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            7765442          1123455666799999999985311         1123455667778888766543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.38  E-value=1.1e-12  Score=115.51  Aligned_cols=128  Identities=12%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.++..+++  +..+++|+|+|+.+++.|++++...+ ..++.++++|+.+.     . |+..+|.++.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v~~  138 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW-----R-PTELFDLIFD  138 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC-----C-CSSCEEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcC-----C-CCCCeeEEEE
Confidence            35899999999999999986  47899999999999999999987543 35799999998763     1 3456888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----------HHHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------EVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ...-.+..      ......+++++.+.|+|||.+++.....          ...+.+.+++.+.||..+.+.
T Consensus       139 ~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          139 YVFFCAIE------PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             ESSTTTSC------GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             ChhhhcCC------HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence            54332211      1134589999999999999999843210          124678888999999876554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.38  E-value=2.7e-12  Score=113.11  Aligned_cols=106  Identities=12%  Similarity=0.168  Sum_probs=81.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++.  ..+++|+|+|+.|++.|+++....+. ++.++++|+.+.     . .+..+|.++..
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~-~~~~fD~v~~~  108 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----N-INRKFDLITCC  108 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----C-CSCCEEEEEEC
T ss_pred             CCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccC-----C-ccCCceEEEEc
Confidence            578999999999999999988  57899999999999999999887765 799999998653     1 12567877654


Q ss_pred             C-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      . .-.+...     ......+++++.++|+|||.+++.+..
T Consensus       109 ~~~l~~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          109 LDSTNYIID-----SDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             TTGGGGCCS-----HHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CccccccCC-----HHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            3 2222100     012358999999999999999986543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.38  E-value=6.4e-12  Score=110.96  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=91.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++.  +.+++|+|+|+.+++.|+++        +.++++|+.+..+   +.++..+|.++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~---~~~~~~fD~i~~~  108 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLK---SLPDKYLDGVMIS  108 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHH---TSCTTCBSEEEEE
T ss_pred             CCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhh---hcCCCCeeEEEEC
Confidence            578999999999999999988  56899999999999998765        6788999876432   2256678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH------------------HHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------------------MLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~------------------~~~~~~~l~~~g~~~~~~~  288 (336)
                      ..-.+.      .......+++++.++|||||++++.+.....                  .+.+.+++.+.||..+...
T Consensus       109 ~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  182 (240)
T 3dli_A          109 HFVEHL------DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE  182 (240)
T ss_dssp             SCGGGS------CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred             CchhhC------CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence            322221      1112368999999999999999996532211                  2467778888898876554

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.38  E-value=6e-12  Score=118.69  Aligned_cols=124  Identities=18%  Similarity=0.201  Sum_probs=86.7

Q ss_pred             ccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH-
Q 019743          113 DIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ-  191 (336)
Q Consensus       113 digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~-  191 (336)
                      -.|+.....+..+++....             ..+.+|||||||+|.+++.+|...+..+++|||+|+.+++.|+++++ 
T Consensus       153 vYGEt~~~~i~~il~~l~l-------------~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~  219 (438)
T 3uwp_A          153 VYGETSFDLVAQMIDEIKM-------------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE  219 (438)
T ss_dssp             GGGGTHHHHHHHHHHHHCC-------------CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHhcCC-------------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            3456566666666654331             13679999999999999999988766679999999999999998653 


Q ss_pred             ------HhCC--CcEEEEecchhHH-HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          192 ------LSGI--TNGYFIATNATST-FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       192 ------~~~~--~nv~~~~~d~~~~-~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                            .+++  .++.|+++|+.+. ++..++    .+|.++++..  .+. .      .....+.++.+.|||||+|++
T Consensus       220 frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~----~aDVVf~Nn~--~F~-p------dl~~aL~Ei~RvLKPGGrIVs  286 (438)
T 3uwp_A          220 FRKWMKWYGKKHAEYTLERGDFLSEEWRERIA----NTSVIFVNNF--AFG-P------EVDHQLKERFANMKEGGRIVS  286 (438)
T ss_dssp             HHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH----TCSEEEECCT--TCC-H------HHHHHHHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHhCCCCCCeEEEECcccCCccccccC----CccEEEEccc--ccC-c------hHHHHHHHHHHcCCCCcEEEE
Confidence                  3454  5899999999763 221111    2455555421  110 0      123566788999999999988

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.38  E-value=7.8e-12  Score=113.68  Aligned_cols=130  Identities=11%  Similarity=0.101  Sum_probs=97.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..|..+++++|+++.+++.|++++...+    ..+++++++|+.+.+..    .+..+|.
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD~  154 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYDV  154 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh----CCCCceE
Confidence            568999999999999999988788999999999999999999876432    35799999999775322    2556888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcCCcce
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g~~~~  285 (336)
                      |++..++|+.    +...++..++++.+.+.|+|||.+++.+..    ......+.+.+.+. |..+
T Consensus       155 Ii~d~~~~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  216 (283)
T 2i7c_A          155 IIVDSSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV  216 (283)
T ss_dssp             EEEECCCTTT----GGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred             EEEcCCCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCce
Confidence            8887666642    122345579999999999999999997532    22334445555443 4433

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.38  E-value=3.2e-12  Score=117.77  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...++. ++.++++|+.+.        |..+|.++.
T Consensus        91 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~~  161 (318)
T 2fk8_A           91 GMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIVS  161 (318)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEEE
T ss_pred             cCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--------CCCcCEEEE
Confidence            5789999999999999999886 579999999999999999999887764 599999998553        245676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...-.+.      .......+++++.++|+|||++++.+
T Consensus       162 ~~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          162 IEAFEHF------GHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             ESCGGGT------CGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eChHHhc------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4221111      01134689999999999999999844

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.38  E-value=4.8e-12  Score=119.55  Aligned_cols=129  Identities=16%  Similarity=0.173  Sum_probs=89.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||||.+++.+|...+..+++|+|+|+.|++.|++|++.+++ +++++.++|+.+.     ..++..+|.++.
T Consensus       218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~fD~Ii~  292 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL-----SQYVDSVDFAIS  292 (373)
T ss_dssp             SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG-----GGTCSCEEEEEE
T ss_pred             CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CcccCCcCEEEE
Confidence            5789999999999999999998777999999999999999999999998 5799999998763     112233444444


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      +.|-............+++++++.+.++|  +|.+++.+....   .+.+.+.+.||...
T Consensus       293 npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~---~~~~~~~~~G~~~~  347 (373)
T 3tm4_A          293 NLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKK---AIEEAIAENGFEII  347 (373)
T ss_dssp             ECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHH---HHHHHHHHTTEEEE
T ss_pred             CCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHH---HHHHHHHHcCCEEE
Confidence            32211100000111234689999999999  455555454433   34557777888754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.38  E-value=2.2e-12  Score=112.50  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=82.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..+  +++|+|+|+.+++.|+++...++ .+++++++|+.+.     +.++..+|.++..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~~D~v~~~  110 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIFI  110 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcC-----CCCCCcEEEEEEc
Confidence            56899999999999999999876  89999999999999999998776 6899999998652     1245578877766


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      .+-.....      ....++++++.+.|+|||.+++...
T Consensus       111 ~~~~~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          111 DSIVHFEP------LELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             SCGGGCCH------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CchHhCCH------HHHHHHHHHHHHHcCCCcEEEEEec
Confidence            33111110      1235899999999999999998654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.37  E-value=3e-12  Score=114.16  Aligned_cols=101  Identities=11%  Similarity=0.166  Sum_probs=80.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.|++.|++++ ..+..++.++++|+...     ..++..+|.++..
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~  111 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAI-----PLPDESVHGVIVV  111 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSC-----CSCTTCEEEEEEE
T ss_pred             CCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccC-----CCCCCCeeEEEEC
Confidence            578999999999999999987  679999999999999999988 44457899999998643     1245678888766


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..-.+..        ....+++++.++|+|||.+++.
T Consensus       112 ~~l~~~~--------~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          112 HLWHLVP--------DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCGGGCT--------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchhhcC--------CHHHHHHHHHHHCCCCcEEEEE
Confidence            4332211        2358999999999999999985

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.37  E-value=1.6e-12  Score=110.12  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.+++.++...|+++++|+|+|+.|++.|++|+..+|.. ++++  .|....    .  |+..+|.+..
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~----~--~~~~~DvVLa  121 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD----V--YKGTYDVVFL  121 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH----H--TTSEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc----C--CCCCcChhhH
Confidence            57999999999999999999999999999999999999999999999987 6777  555332    1  6777888766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ...-|..  .+      .+..+..+.+.|+|||.++-
T Consensus       122 ~k~LHlL--~~------~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          122 LKMLPVL--KQ------QDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             ETCHHHH--HH------TTCCHHHHHHTCEEEEEEEE
T ss_pred             hhHHHhh--hh------hHHHHHHHHHHhCCCCEEEE
Confidence            5222211  00      11334478899999997664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.37  E-value=3.1e-12  Score=117.95  Aligned_cols=126  Identities=13%  Similarity=0.118  Sum_probs=89.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--C--CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--G--ITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~--~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++..|..+++++|+|+.+++.|++++...  +  ..+++++.+|+.+.+..    ++..+|.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~~fD~  184 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEFDV  184 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh----cCCCceE
Confidence            56899999999999999998878899999999999999999998643  2  25799999999775332    4566888


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  280 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~  280 (336)
                      |++..++|..    ....++..++++.+.+.|+|||.+++..+.    ......+.+.+.+.
T Consensus       185 Ii~d~~~~~~----~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v  242 (314)
T 2b2c_A          185 IITDSSDPVG----PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI  242 (314)
T ss_dssp             EEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCCC----cchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH
Confidence            8877665531    112233479999999999999999997632    12333444555443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.37  E-value=2.3e-12  Score=111.34  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++..++..|++++++|+.+..   .  ++..+|.++..
T Consensus        78 ~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~--~~~~~D~i~~~  150 (210)
T 3lbf_A           78 QSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW---Q--ARAPFDAIIVT  150 (210)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC---G--GGCCEEEEEES
T ss_pred             CCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC---c--cCCCccEEEEc
Confidence            578999999999999999998  6899999999999999999999988889999999987631   1  23457877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ..-++.              .+.+.+.|+|||++++....
T Consensus       151 ~~~~~~--------------~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          151 AAPPEI--------------PTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SBCSSC--------------CTHHHHTEEEEEEEEEEECS
T ss_pred             cchhhh--------------hHHHHHhcccCcEEEEEEcC
Confidence            433321              13578899999999997754

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.36  E-value=9.7e-13  Score=127.07  Aligned_cols=132  Identities=18%  Similarity=0.089  Sum_probs=92.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..++.+|+..++ ..|+|+|+|+.+++.+++|++++|+. +.++++|+..... ..   +..+|.|++
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~-~~---~~~FD~Il~  176 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE-AF---GTYFHRVLL  176 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH-HH---CSCEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh-hc---cccCCEEEE
Confidence            679999999999999999998754 79999999999999999999999998 9999999876311 11   334555554


Q ss_pred             eCCC---------CCCCcchh-----hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC-Cc
Q 019743          226 QCPN---------PDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG-KG  283 (336)
Q Consensus       226 ~~~d---------p~~~~~~~-----~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g-~~  283 (336)
                      +.|-         |.......     .....++++++.+.++|||||++++.|..   .+..+.+...+.+++ |.
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~  252 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFR  252 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEE
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcE
Confidence            3221         21100000     01123578999999999999999986532   233345556666663 44

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.36  E-value=2.9e-12  Score=110.94  Aligned_cols=159  Identities=11%  Similarity=0.036  Sum_probs=100.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++    .+..++.++++|+.+.    +  ++..+|.++..
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~----~--~~~~~D~v~~~  114 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW----T--PDRQWDAVFFA  114 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC----C--CSSCEEEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC----C--CCCceeEEEEe
Confidence            469999999999999999998  6799999999999999987    5667899999998653    2  56678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS  306 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~  306 (336)
                      ..-.+..      ......+++++.++|+|||.+++.+.... .......+...+..........      ...+.....
T Consensus       115 ~~l~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  181 (218)
T 3ou2_A          115 HWLAHVP------DDRFEAFWESVRSAVAPGGVVEFVDVTDH-ERRLEQQDDSEPEVAVRRTLQD------GRSFRIVKV  181 (218)
T ss_dssp             SCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEEECCC-C------------CEEEEECTT------SCEEEEECC
T ss_pred             chhhcCC------HHHHHHHHHHHHHHcCCCeEEEEEeCCCC-ccccchhhhcccccceeeecCC------cchhhHhhc
Confidence            3222211      11135899999999999999999653321 1122222222222211111000      000000012


Q ss_pred             CCCCCHHHHHHHHcCCCeEEEEEE
Q 019743          307 FGVRSDWEQHVIDRGAPMYRLMLS  330 (336)
Q Consensus       307 ~~~~t~~e~~~~~~G~~i~~~~~~  330 (336)
                      .....+++..+.+.|+.+......
T Consensus       182 ~~~~~~~~~~l~~aGf~v~~~~~~  205 (218)
T 3ou2_A          182 FRSPAELTERLTALGWSCSVDEVH  205 (218)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEeeecc
Confidence            246688899999999887665443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.36  E-value=2.8e-12  Score=112.30  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=81.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+++.. |..+++|+|+|+.|++.++++++.+  .|++++++|+.+. +. ....+..+|.++.
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~-~~-~~~~~~~~D~v~~  149 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKP-EE-YRALVPKVDVIFE  149 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCG-GG-GTTTCCCEEEEEE
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCc-ch-hhcccCCceEEEE
Confidence            5689999999999999999884 6789999999999999999988654  6899999998753 11 1112346888877


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..+.++          ....++.++.++|+|||++++..
T Consensus       150 ~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          150 DVAQPT----------QAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCHh----------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            655332          12355899999999999999853

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.35  E-value=2.3e-12  Score=114.71  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=81.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++..|..+++|+|+|+.|++.|+++     ..++.++++|+.+.     . ++..+|.++..
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~-----~-~~~~fD~v~~~  102 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATW-----K-PAQKADLLYAN  102 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTC-----C-CSSCEEEEEEE
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhc-----C-ccCCcCEEEEe
Confidence            5689999999999999999998899999999999999999877     35789999998653     2 45678888776


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+..        ....+++++.++|+|||++++.+
T Consensus       103 ~~l~~~~--------~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          103 AVFQWVP--------DHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             SCGGGST--------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CchhhCC--------CHHHHHHHHHHhcCCCeEEEEEe
Confidence            4333211        23589999999999999999965

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.35  E-value=6.7e-13  Score=120.05  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=90.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|||+|.+++.+|+.. .++|+|+|+|+.+++.+++|++.+++++ +.++++|+.+.    .  +...+|.+.
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~----~--~~~~~D~Vi  197 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----P--GENIADRIL  197 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----C--CCSCEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh----c--cccCCCEEE
Confidence            36799999999999999999874 5789999999999999999999999865 99999998653    1  234577776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------HHHHHHHHHHHHHcCCcc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~l~~~g~~~  284 (336)
                      ++.|  .          ....++..+.+.|++||++++....      ....+.+.+...+.|+..
T Consensus       198 ~~~p--~----------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          198 MGYV--V----------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             ECCC--S----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ECCC--C----------cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence            6532  1          1126777888999999999773211      122455666677777764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.35  E-value=8.8e-13  Score=134.05  Aligned_cols=132  Identities=12%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||||.+++.+|+.. ..+|+++|+|+.|++.|++|++.++++  +++++++|+.+.+..    ....+|.|+
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~----~~~~fD~Ii  614 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE----ANEQFDLIF  614 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH----CCCCEEEEE
T ss_pred             CCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh----cCCCccEEE
Confidence            5689999999999999999864 356999999999999999999999986  799999999874221    223455544


Q ss_pred             eeCCCCCCCcc---hhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          225 IQCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       225 ~~~~dp~~~~~---~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      ++.|--.....   .......+.+++..+.++|+|||.+++.+.... +..-.+.+.+.|+..
T Consensus       615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~-~~~~~~~l~~~g~~~  676 (703)
T 3v97_A          615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG-FRMDLDGLAKLGLKA  676 (703)
T ss_dssp             ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT-CCCCHHHHHHTTEEE
T ss_pred             ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccCHHHHHHcCCce
Confidence            43221000000   001123567899999999999999999886522 222345667778763

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.35  E-value=8.7e-12  Score=117.45  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++++++|+.+.    +  | ..+|.++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~-~~~D~v~  253 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----L--P-VTADVVL  253 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--S-CCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----C--C-CCCCEEE
Confidence            357999999999999999999999999999999 99999999999888875 799999998642    1  2 2377766


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +...-.+.      ......++++++.+.|+|||++++..
T Consensus       254 ~~~vl~~~------~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          254 LSFVLLNW------SDEDALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             EESCGGGS------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeccccCC------CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            64321110      01112489999999999999988743

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.35  E-value=6.3e-12  Score=113.96  Aligned_cols=103  Identities=11%  Similarity=0.069  Sum_probs=82.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|++++..++. +++++++|+.+.     . ++..+|.++..
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~-~~~~fD~i~~~  191 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAA-----N-IQENYDFIVST  191 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGC-----C-CCSCEEEEEEC
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccc-----c-ccCCccEEEEc
Confidence            578999999999999999988  57999999999999999999998887 899999998653     1 14567877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+.      .......+++++.+.|+|||.+++.+
T Consensus       192 ~~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          192 VVFMFL------NRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             SSGGGS------CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhC------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            322211      11234589999999999999988744

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.34  E-value=8.6e-12  Score=109.84  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.. ..+++|+|+|+.+++.|+++...   .++.++++|+...     ..++..+|.++..
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~-----~~~~~~fD~v~~~  114 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKL-----HLPQDSFDLAYSS  114 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGC-----CCCTTCEEEEEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhc-----cCCCCCceEEEEe
Confidence            5789999999999999999873 23899999999999999887532   4799999998653     1245678877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-.+.        .....+++++.++|+|||.+++.+.
T Consensus       115 ~~l~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          115 LALHYV--------EDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             SCGGGC--------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccc--------chHHHHHHHHHHhcCcCcEEEEEeC
Confidence            322211        1235899999999999999999653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.34  E-value=6.1e-12  Score=106.62  Aligned_cols=126  Identities=10%  Similarity=0.101  Sum_probs=93.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++.  +.+++|+|+|+.+++.|+++.     .++.++++|+.+.     ..++..+|.++..
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~-----~~~~~~~D~i~~~  114 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVD-----QISETDFDLIVSA  114 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTS-----CCCCCCEEEEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccC-----CCCCCceeEEEEC
Confidence            579999999999999999988  579999999999999998765     4588999998652     1245567877654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH--HHHHHHHHHHHcCCcceeeec
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      .+.-+     +........+++.+.+.|+|||.+++......  ..+.+.+.+.+.||.......
T Consensus       115 ~~~~~-----~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          115 GNVMG-----FLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CCCGG-----GSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred             CcHHh-----hcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence            21111     11111235899999999999999999654321  256788888999998765543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.34  E-value=2.1e-11  Score=116.04  Aligned_cols=136  Identities=12%  Similarity=0.088  Sum_probs=96.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-C-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-T-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+|||+|.+++.+|+.. ..+|+|+|+|+.+++.|++|++.+++ + |++++++|+.+.+..... ....+|.++
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~-~~~~fD~Ii  298 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVIV  298 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh-cCCCCCEEE
Confidence            5689999999999999999874 46899999999999999999999998 6 899999999875332211 133567766


Q ss_pred             eeCCCCCCCcch-hhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHHHHHHHHHHcCCcc
Q 019743          225 IQCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       225 ~~~~dp~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~g~~~  284 (336)
                      +..|--.....+ ......+..++..+.+.|+|||.+++.+...     ...+.+.+.+.+.|+..
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            653221100000 0111235689999999999999999976432     22334455667777543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.34  E-value=2e-12  Score=110.94  Aligned_cols=131  Identities=13%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC--CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCC--------
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK--DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY--------  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p--~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnp--------  216 (336)
                      ..+|||||||+|.++..++++.|  ..+++|+|+|+.+           ...++.++++|+.+.-..+++||        
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~   91 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN   91 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence            56899999999999999999987  6899999999831           24578999999865310122332        


Q ss_pred             ------------CCeEEEEEeeCCCCCCCc--chhh-hhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC
Q 019743          217 ------------PGKLILVSIQCPNPDFNR--PEHR-WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  281 (336)
Q Consensus       217 ------------p~~~d~i~~~~~dp~~~~--~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g  281 (336)
                                  +..+|.++....-++...  ..+. .......+++++.++|+|||.+++.+........+.+.+.. .
T Consensus        92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~  170 (201)
T 2plw_A           92 NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-M  170 (201)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-T
T ss_pred             hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-H
Confidence                        346787766543222111  0111 01112468899999999999999965332333455555554 3


Q ss_pred             Ccceeeec
Q 019743          282 KGKLVLVQ  289 (336)
Q Consensus       282 ~~~~~~~~  289 (336)
                      |..+...+
T Consensus       171 f~~v~~~~  178 (201)
T 2plw_A          171 FQLVHTTK  178 (201)
T ss_dssp             EEEEEECC
T ss_pred             HheEEEEC
Confidence            55444433

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.34  E-value=5.4e-12  Score=121.70  Aligned_cols=134  Identities=13%  Similarity=0.109  Sum_probs=96.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..++.+|+..+ ...|+|+|+|+.+++.+++|++++|+.|+.++++|+..... ..   +..+|.|.+
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~-~~---~~~FD~Il~  181 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP-HF---SGFFDRIVV  181 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH-HH---TTCEEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh-hc---cccCCEEEE
Confidence            67999999999999999998754 47999999999999999999999999999999999876421 11   345676666


Q ss_pred             eCCCC----CCCcchhh----------hhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcCCcc
Q 019743          226 QCPNP----DFNRPEHR----------WRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       226 ~~~dp----~~~~~~~~----------~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g~~~  284 (336)
                      +.|-.    ..+.....          ....++++++.+.++|||||+++..|..   .+..+.+...+.+++|..
T Consensus       182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l  257 (456)
T 3m4x_A          182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTI  257 (456)
T ss_dssp             ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEE
Confidence            53310    00101000          0123568999999999999999986632   233445667777777543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.34  E-value=9.1e-12  Score=109.70  Aligned_cols=105  Identities=15%  Similarity=0.274  Sum_probs=80.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++.   .+++|+|+|+.+++.|++++...+ .++.++++|+.+.     . .+..+|.+++.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~-~~~~fD~v~~~  103 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMREL-----E-LPEPVDAITIL  103 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGC-----C-CSSCEEEEEEC
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhc-----C-CCCCcCEEEEe
Confidence            468999999999999999877   799999999999999999988766 5799999998653     1 23567877654


Q ss_pred             C-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      . .-.+..     .......+++++.++|+|||.+++.+..
T Consensus       104 ~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A          104 CDSLNYLQ-----TEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             TTGGGGCC-----SHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCchhhcC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            2 111110     1112358899999999999999996654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.34  E-value=5.6e-13  Score=118.75  Aligned_cols=116  Identities=13%  Similarity=0.047  Sum_probs=78.2

Q ss_pred             CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHh---CCCc------------------------
Q 019743          147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLS---GITN------------------------  197 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~---~~~n------------------------  197 (336)
                      ..+|||+|||||.+++.+++.  .+..+++|+|+|+.|++.|++|+..+   ++.+                        
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  131 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence            468999999999999999988  67889999999999999999998765   4322                        


Q ss_pred             --EE-------------EEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcch-hhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          198 --GY-------------FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       198 --v~-------------~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                        ++             +.++|+.+.+......+...+|.|+.+.|-......+ ......+..+++++.++|+|||+++
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  211 (250)
T 1o9g_A          132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  211 (250)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence              56             8899875421100000112345554442211000000 0112345789999999999999999


Q ss_pred             E
Q 019743          262 L  262 (336)
Q Consensus       262 ~  262 (336)
                      +
T Consensus       212 ~  212 (250)
T 1o9g_A          212 V  212 (250)
T ss_dssp             E
T ss_pred             E
Confidence            9

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.34  E-value=5.2e-13  Score=130.06  Aligned_cols=103  Identities=13%  Similarity=0.191  Sum_probs=77.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.+++.+|+ .+..+|+|+|+|+ +++.|+++++.+++ ++++++++|+.+.     . .+..+|.++.
T Consensus       159 ~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-----~-~~~~fD~Ivs  230 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-----S-LPEQVDIIIS  230 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEEC
T ss_pred             CCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-----c-cCCCeEEEEE
Confidence            56899999999999999987 4678999999998 99999999999988 5799999998752     1 2345776665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..+.      ++.........+..+.++|+|||.+++.
T Consensus       231 ~~~~------~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          231 EPMG------YMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CCCH------HHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             eCch------HhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3210      0100011235666889999999999863

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.33  E-value=1.1e-12  Score=127.59  Aligned_cols=131  Identities=17%  Similarity=0.174  Sum_probs=92.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..++.+|+..+ ...|+|+|+|+.+++.+++|++++|+.|+.++++|+... +..   .+..+|.|.+
T Consensus       118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~-~~~---~~~~fD~Il~  193 (479)
T 2frx_A          118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF-GAA---VPEMFDAILL  193 (479)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH-HHH---STTCEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh-hhh---ccccCCEEEE
Confidence            57899999999999999999864 589999999999999999999999999999999998653 110   1234555554


Q ss_pred             eCC---------CCCCCcc---hh--hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          226 QCP---------NPDFNRP---EH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       226 ~~~---------dp~~~~~---~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      ..|         +|.....   ..  .-...+.++++.+.++|||||++++.|..   .+..+.+...+++++
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence            322         1111000   00  00123568999999999999999996632   122334555666665

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.33  E-value=1.1e-12  Score=122.25  Aligned_cols=113  Identities=13%  Similarity=0.200  Sum_probs=86.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++. |+  ...+++|+|+|+.+++.|++|++.+++ .+++++++|+.+..        ..+|.+++
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------~~fD~Vi~  264 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------VKGNRVIM  264 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--------CCEEEEEE
T ss_pred             CCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--------CCCcEEEE
Confidence            57899999999999999 87  378999999999999999999999998 57999999987641        34666655


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc-CCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKG  283 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~-g~~  283 (336)
                      +.  |.          ....+++.+.+.|+|||.+++.+.... .+...+.+.+. ++.
T Consensus       265 dp--P~----------~~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~~~~~  310 (336)
T 2yx1_A          265 NL--PK----------FAHKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKKCDCE  310 (336)
T ss_dssp             CC--TT----------TGGGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHHSEEE
T ss_pred             CC--cH----------hHHHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHhcCCc
Confidence            42  11          112788889999999999888543333 45555666655 554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.33  E-value=5.4e-12  Score=110.45  Aligned_cols=103  Identities=25%  Similarity=0.332  Sum_probs=80.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-----CCCeEEEEecChHHHHHHHHHHHHhC-----CCcEEEEecchhHHHHh-hhcC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRS-IVAS  215 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-----p~~~v~giDis~~~l~~a~~n~~~~~-----~~nv~~~~~d~~~~~d~-ivsn  215 (336)
                      +.+|||||||+|.++..+++..     |..+++|+|+|+.+++.|++++..++     ..++.++++|+...... ..  
T Consensus        81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--  158 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK--  158 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH--
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc--
Confidence            5789999999999999999985     56899999999999999999999887     57899999998763100 01  


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ++..+|.+++..+.+              .+++.+.+.|+|||++++...
T Consensus       159 ~~~~fD~I~~~~~~~--------------~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASAS--------------ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBS--------------SCCHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchH--------------HHHHHHHHhcCCCcEEEEEEc
Confidence            123468776653322              234777899999999999764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.33  E-value=7.8e-12  Score=111.03  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++.  +.+++|+|+|+.|++.|++++...+. ++.++++|+.+.     . ++..+|.+++.
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~v~~~  112 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-----A-FKNEFDAVTMF  112 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-----C-CCSCEEEEEEC
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhc-----c-cCCCccEEEEc
Confidence            568999999999999999987  67999999999999999999987765 699999998753     1 23467877654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +....     +.......++++++.++|+|||.+++....
T Consensus       113 ~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          113 FSTIM-----YFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SSGGG-----GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCchh-----cCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            32211     001112468999999999999999986643

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.33  E-value=4.7e-12  Score=118.27  Aligned_cols=120  Identities=19%  Similarity=0.277  Sum_probs=87.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..|..+++|+|+|+.|++.|++|+..++.. ++++.+|+...       ++..+|.++.+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~-------~~~~fD~Iv~~  268 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSE-------VKGRFDMIISN  268 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTT-------CCSCEEEEEEC
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEcccccc-------ccCCeeEEEEC
Confidence            45899999999999999999999899999999999999999999888765 67788887542       24456766655


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHH
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  277 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l  277 (336)
                      .|-.+..   ........++++++.++|+|||.+++.... ..+...+.+.+
T Consensus       269 ~~~~~g~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f  317 (343)
T 2pjd_A          269 PPFHDGM---QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETF  317 (343)
T ss_dssp             CCCCSSS---HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHH
T ss_pred             CCcccCc---cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhc
Confidence            3322100   011123468999999999999999996532 23344444443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.33  E-value=7.1e-12  Score=115.04  Aligned_cols=113  Identities=17%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC------cEEEEecchhH-----HHHhhhcC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT------NGYFIATNATS-----TFRSIVAS  215 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~------nv~~~~~d~~~-----~~d~ivsn  215 (336)
                      +.+|||||||+|..+..++... ..+|+|+|+|+.|++.|++++...+..      ++.|.+.|+..     .+...+  
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~--  125 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF--  125 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC--
T ss_pred             CCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc--
Confidence            5789999999998776666543 578999999999999999998776543      36677777621     111112  


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  267 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~  267 (336)
                      |+..+|.+...+.-.+.-..     .....++++++++|||||.+++.+.+.
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~-----~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHP-----RHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCST-----TTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             cCCCeeEEEECchHHHhCCH-----HHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            45678888765432211000     012589999999999999999977653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.33  E-value=4.2e-12  Score=110.10  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=80.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..  .+++|+|+|+.+++.|+++....  .+++++++|+.+.     . ++..+|.++..
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~-----~-~~~~fD~v~~~  121 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQF-----S-TAELFDLIVVA  121 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTC-----C-CSCCEEEEEEE
T ss_pred             CCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhC-----C-CCCCccEEEEc
Confidence            4689999999999999999884  68999999999999999987653  4899999998763     1 45678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-.+...     .....++++++.++|+|||.+++.+.
T Consensus       122 ~~l~~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          122 EVLYYLED-----MTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             SCGGGSSS-----HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cHHHhCCC-----HHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            33222111     01224789999999999999999653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=1.3e-11  Score=111.47  Aligned_cols=147  Identities=12%  Similarity=0.145  Sum_probs=98.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++  +..+++|+|+|+.|++.|+++.     .++.+.++|+... +     ++..+|.++..
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-~-----~~~~fD~v~~~  124 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF-R-----VDKPLDAVFSN  124 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC-C-----CSSCEEEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC-C-----cCCCcCEEEEc
Confidence            56899999999999999998  6889999999999999998764     5788999998652 1     24568887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCcceeeeccccccccCCCCCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWL  302 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~  302 (336)
                      ..-.+..        ....+++++.++|+|||++++.+...    .....+.+.+...++...    + +     .    
T Consensus       125 ~~l~~~~--------d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----~----  182 (279)
T 3ccf_A          125 AMLHWVK--------EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNP----Q-A-----L----  182 (279)
T ss_dssp             SCGGGCS--------CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCG----G-G-----G----
T ss_pred             chhhhCc--------CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccc----c-C-----c----
Confidence            4322211        23589999999999999999965322    223334444444444210    0 0     0    


Q ss_pred             CCCCCCCCCHHHHHHHHcCCCeEEEE
Q 019743          303 GENSFGVRSDWEQHVIDRGAPMYRLM  328 (336)
Q Consensus       303 ~~~~~~~~t~~e~~~~~~G~~i~~~~  328 (336)
                      ..........+...+.+.|+.+....
T Consensus       183 ~~~~~~~~~~~~~~l~~aGf~~~~~~  208 (279)
T 3ccf_A          183 NPWYFPSIGEYVNILEKQGFDVTYAA  208 (279)
T ss_dssp             CCCCCCCHHHHHHHHHHHTEEEEEEE
T ss_pred             CceeCCCHHHHHHHHHHcCCEEEEEE
Confidence            00111233467777888888775543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.31  E-value=1e-11  Score=117.43  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=87.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+++.  +.+|+|+|+|+.|++.|++|+..++.+ ++++++|+.+..   .  ++..+|.|+.+
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~---~--~~~~fD~Ii~n  305 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEAL---T--EEARFDIIVTN  305 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTS---C--TTCCEEEEEEC
T ss_pred             CCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcc---c--cCCCeEEEEEC
Confidence            568999999999999999988  579999999999999999999988865 899999986531   1  22456766654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHH
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  277 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l  277 (336)
                      .|-.+..   .........+++++.++|+|||.+++.+.. ..+...+.+.+
T Consensus       306 pp~~~~~---~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f  354 (381)
T 3dmg_A          306 PPFHVGG---AVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKF  354 (381)
T ss_dssp             CCCCTTC---SSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHH
T ss_pred             Cchhhcc---cccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhh
Confidence            3322100   001123468999999999999999997643 23444444444

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.31  E-value=1.3e-11  Score=105.87  Aligned_cols=100  Identities=11%  Similarity=0.051  Sum_probs=79.5

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743          149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  228 (336)
Q Consensus       149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~  228 (336)
                      +|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++....+. ++.++++|+.+.     ..++..+|.++..+.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADF-----DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTB-----SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhc-----CCCcCCccEEEEEhh
Confidence            9999999999999999987  57999999999999999999988776 799999998653     113455677665431


Q ss_pred             CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          229 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       229 dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                        +.      .......+++++.+.|+|||.+++.+
T Consensus       104 --~~------~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          104 --HL------PSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             --CC------CHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             --cC------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence              11      01124589999999999999999965

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.31  E-value=1.6e-11  Score=113.82  Aligned_cols=105  Identities=20%  Similarity=0.297  Sum_probs=82.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||+|||+|.++..+++.+|+.+++++|+| .+++.|++++...++. ++++.++|+.+.     + .+..+|.++
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~v~  237 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-----D-YGNDYDLVL  237 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-----C-CCSCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCcEEE
Confidence            3579999999999999999999999999999999 9999999999888875 599999998652     1 133378776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +...-.+.      ......++++++.+.|+|||++++.
T Consensus       238 ~~~~l~~~------~~~~~~~~l~~~~~~L~pgG~l~i~  270 (335)
T 2r3s_A          238 LPNFLHHF------DVATCEQLLRKIKTALAVEGKVIVF  270 (335)
T ss_dssp             EESCGGGS------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcchhccC------CHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            64321111      0112358999999999999988873

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.31  E-value=1.1e-11  Score=107.69  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++      .++.+.++|+........ .+...+|.++..
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~-~~~~~fD~v~~~  123 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV-PVGKDYDLICAN  123 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS-CCCCCEEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc-ccCCCccEEEEC
Confidence            578999999999999999988  67999999999999999876      456788888766411111 123347877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-.+         .....+++++.++|+|||++++.+.
T Consensus       124 ~~l~~---------~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          124 FALLH---------QDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             SCCCS---------SCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             chhhh---------hhHHHHHHHHHHHhCCCeEEEEEec
Confidence            32221         1234899999999999999999653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.31  E-value=1.5e-11  Score=114.14  Aligned_cols=103  Identities=14%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .++++..+|+.+.    +  |. .+|.+++
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--p~-~~D~v~~  241 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP----L--PA-GAGGYVL  241 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--CC-SCSEEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC----C--CC-CCcEEEE
Confidence            46899999999999999999999999999999 9999999999988876 5799999998631    1  32 5676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+.      ......++++++++.|+|||++++.
T Consensus       242 ~~vlh~~------~~~~~~~~l~~~~~~L~pgG~l~i~  273 (332)
T 3i53_A          242 SAVLHDW------DDLSAVAILRRCAEAAGSGGVVLVI  273 (332)
T ss_dssp             ESCGGGS------CHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             ehhhccC------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4321110      0112358999999999999999884

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.31  E-value=3.9e-11  Score=114.19  Aligned_cols=134  Identities=15%  Similarity=0.102  Sum_probs=93.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+|+. +..+++|+|+|+.+++.|++|++.++++ |++++++|+.+.+..... ++..+|.+++
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~Vi~  295 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK-KGEKFDIVVL  295 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH-TTCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh-hCCCCCEEEE
Confidence            578999999999999999987 3468999999999999999999999987 899999999875432221 2345787766


Q ss_pred             eCCCCCCCcch-hhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHHHHHHHHHHcCC
Q 019743          226 QCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGK  282 (336)
Q Consensus       226 ~~~dp~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~g~  282 (336)
                      +.|--.....+ ......+..++..+.+.|+|||.+++.+...     ...+.+.+.+...+.
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~  358 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGK  358 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            42211100000 0111235789999999999999998865432     122334445555553

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.31  E-value=4.9e-11  Score=113.21  Aligned_cols=129  Identities=22%  Similarity=0.229  Sum_probs=90.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||||.+++.+|+.  ++.|+|+|+|+.|++.|++|++.+++.+ ++.++|+.+.+...    +..+|.++++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~~----~~~fD~Ii~d  287 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRGL----EGPFHHVLLD  287 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHTC----CCCEEEEEEC
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHHh----cCCCCEEEEC
Confidence            578999999999999999987  4559999999999999999999999864 56699987753321    2227777665


Q ss_pred             CCCCCCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~g~~  283 (336)
                      .|. +.+....  .....+.+++..+.+.|+|||.+++.+...     ...+.+.+.+...|..
T Consensus       288 pP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~  350 (393)
T 4dmg_A          288 PPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR  350 (393)
T ss_dssp             CCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred             CCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence            321 1111111  112246789999999999999999654321     2233455556666654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.30  E-value=6.1e-12  Score=108.33  Aligned_cols=105  Identities=10%  Similarity=0.095  Sum_probs=79.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..++.. ++.+++|+|+|+.|++.|++++...+ .++.++++|+.+.     +.++..+|.++..
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~~   96 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKL-----PFKDESMSFVYSY   96 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSC-----CSCTTCEEEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhC-----CCCCCceeEEEEc
Confidence            578999999999986555444 46799999999999999999988776 5788999998652     2245678877654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+.      ......++++++.++|+|||.+++..
T Consensus        97 ~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           97 GTIFHM------RKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             SCGGGS------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHHhC------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            221111      11134689999999999999999965

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=7.4e-12  Score=108.53  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=81.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++.. |..+++|+|+|+.+++.|++++...+..++.+.++|+...+.     ++..+|.++.
T Consensus        78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~v~~  152 (215)
T 2yxe_A           78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-----PLAPYDRIYT  152 (215)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-----CCCCeeEEEE
Confidence            5699999999999999999986 668999999999999999999998888889999999854211     1345787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ...-++              +.+++.+.|+|||++++....
T Consensus       153 ~~~~~~--------------~~~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          153 TAAGPK--------------IPEPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             SSBBSS--------------CCHHHHHTEEEEEEEEEEESS
T ss_pred             CCchHH--------------HHHHHHHHcCCCcEEEEEECC
Confidence            543332              114778999999999997754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.30  E-value=2e-11  Score=114.46  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++++.+|+.+.    +  |. .+|.++
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~-~~D~v~  254 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L--PR-KADAII  254 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--SS-CEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C--CC-CccEEE
Confidence            357999999999999999999999999999999 99999999999888875 799999998642    1  22 367766


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +...-.+.      ......++++++.+.|+|||++++.
T Consensus       255 ~~~vl~~~------~~~~~~~~l~~~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          255 LSFVLLNW------PDHDAVRILTRCAEALEPGGRILIH  287 (360)
T ss_dssp             EESCGGGS------CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EcccccCC------CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            54321110      0011247999999999999999874

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=1.5e-11  Score=108.75  Aligned_cols=105  Identities=12%  Similarity=0.072  Sum_probs=75.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-HHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-FRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++..+  +++|+|+|+.|++.|+++.   ...++.++++|+.+. +..-+. ....+|.++.
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~-~~~~~d~v~~  130 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIH-SEIGDANIYM  130 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHH-HHHCSCEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccc-cccCccEEEE
Confidence            56899999999999999999976  8999999999999999876   335899999998763 111110 0011355554


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+..      ......+++++.++|||||++++.
T Consensus       131 ~~~~~~~~------~~~~~~~l~~~~~~LkpgG~l~i~  162 (245)
T 3ggd_A          131 RTGFHHIP------VEKRELLGQSLRILLGKQGAMYLI  162 (245)
T ss_dssp             ESSSTTSC------GGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred             cchhhcCC------HHHHHHHHHHHHHHcCCCCEEEEE
Confidence            43222211      112358999999999999997774

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.30  E-value=1.1e-11  Score=115.94  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=80.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++++.+++.+ ++++++|+.+.     ..|+..+|.++.
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~Iis  139 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIIS  139 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc-----cCCCCceEEEEE
Confidence            578999999999999999988 567999999995 9999999999998865 99999998763     224567887765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .......     ......+.++..+.++|||||.++.
T Consensus       140 ~~~~~~l-----~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          140 EWMGYCL-----FYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CCCBBTB-----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccccc-----cCchhHHHHHHHHHHhCCCCCEEcc
Confidence            4221110     0012346889999999999999865

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.30  E-value=2.8e-12  Score=113.28  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+++.  ..+++|+|+|+.|++.|++|+..+++ .++.++++|+.+..      ++..+|.++.
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~~  150 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA------SFLKADVVFL  150 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG------GGCCCSEEEE
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc------ccCCCCEEEE
Confidence            578999999999999999987  48999999999999999999999988 58999999997641      2334565554


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +.|-.+.  ...      ...+.++.++|+|||.+++
T Consensus       151 ~~~~~~~--~~~------~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          151 SPPWGGP--DYA------TAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             CCCCSSG--GGG------GSSSBCTTTSCSSCHHHHH
T ss_pred             CCCcCCc--chh------hhHHHHHHhhcCCcceeHH
Confidence            4322211  000      1133456677777777554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.29  E-value=6.3e-12  Score=112.49  Aligned_cols=99  Identities=14%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++.     .++.++++|+.+.     . .+..+|.++..
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~-~~~~fD~v~~~  117 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRN-----PDAVLHHGDMRDF-----S-LGRRFSAVTCM  117 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTC-----C-CSCCEEEEEEC
T ss_pred             CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC-----CCCEEEECChHHC-----C-ccCCcCEEEEc
Confidence            578999999999999999988  458999999999999998874     3789999998653     1 14567877665


Q ss_pred             C-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      + .-.+..     .......+++++.++|+|||.+++.
T Consensus       118 ~~~l~~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          118 FSSIGHLA-----GQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             TTGGGGSC-----HHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CchhhhcC-----CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3 211110     0112358899999999999999994

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.29  E-value=3.9e-12  Score=112.59  Aligned_cols=131  Identities=12%  Similarity=0.098  Sum_probs=92.3

Q ss_pred             cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHH
Q 019743          116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      |++...+...+...+                ..+|||||||+|.++..+|+.    .|+.+|+|+|+|+.|++.|+.   
T Consensus        67 p~~~~~l~~~l~~~~----------------~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---  127 (236)
T 2bm8_A           67 PDTQAVYHDMLWELR----------------PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---  127 (236)
T ss_dssp             HHHHHHHHHHHHHHC----------------CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---
T ss_pred             HHHHHHHHHHHHhcC----------------CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---
Confidence            777777777665322                468999999999999999997    688999999999999998861   


Q ss_pred             HhCCCcEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHh-cCcCCcEEEEEeCc--
Q 019743          192 LSGITNGYFIATNATST--FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI--  266 (336)
Q Consensus       192 ~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~-~LkpgG~l~~~~~~--  266 (336)
                       . ..|++++++|+.+.  ++. .  +...+|.+++...  +         ..+..++.++.+ .|+|||++++..-.  
T Consensus       128 -~-~~~v~~~~gD~~~~~~l~~-~--~~~~fD~I~~d~~--~---------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~  191 (236)
T 2bm8_A          128 -D-MENITLHQGDCSDLTTFEH-L--REMAHPLIFIDNA--H---------ANTFNIMKWAVDHLLEEGDYFIIEDMIPY  191 (236)
T ss_dssp             -G-CTTEEEEECCSSCSGGGGG-G--SSSCSSEEEEESS--C---------SSHHHHHHHHHHHTCCTTCEEEECSCHHH
T ss_pred             -c-CCceEEEECcchhHHHHHh-h--ccCCCCEEEECCc--h---------HhHHHHHHHHHHhhCCCCCEEEEEeCccc
Confidence             1 26899999998753  221 1  1224677666532  1         134688999997 99999999994210  


Q ss_pred             -HH-HHHHHHHHHHHcC
Q 019743          267 -EE-VMLRMKQQFLEYG  281 (336)
Q Consensus       267 -~~-~~~~~~~~l~~~g  281 (336)
                       .. ....+.+.+++.+
T Consensus       192 ~~~~~~~~~~~~l~~~~  208 (236)
T 2bm8_A          192 WYRYAPQLFSEYLGAFR  208 (236)
T ss_dssp             HHHHCHHHHHHHHHTTT
T ss_pred             ccccCHHHHHHHHHhCc
Confidence             01 1125666666653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.29  E-value=2e-11  Score=110.94  Aligned_cols=117  Identities=8%  Similarity=0.045  Sum_probs=83.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC----CcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI----TNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~----~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.|++.|++++...+.    .++.+..+|+...-+.++  ++..+|.
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~fD~  133 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP--AGDGFDA  133 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC--CTTCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc--cCCCeEE
Confidence            568999999999999999988  45999999999999999998755432    368899999876422222  4567888


Q ss_pred             EEee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          223 VSIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       223 i~~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      +++. ..-.+.... ........+++++++++|||||++++.+.+.+
T Consensus       134 V~~~g~~l~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  179 (293)
T 3thr_A          134 VICLGNSFAHLPDS-KGDQSEHRLALKNIASMVRPGGLLVIDHRNYD  179 (293)
T ss_dssp             EEECTTCGGGSCCS-SSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EEEcChHHhhcCcc-ccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence            7764 221111100 00001246899999999999999999776533

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.29  E-value=1.6e-11  Score=115.22  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=80.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.+ ++++.+|+.+.   .+  |.+  |.++
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~--~~~--D~v~  261 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE---SY--PEA--DAVL  261 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS---CC--CCC--SEEE
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC---CC--CCC--CEEE
Confidence            357999999999999999999999999999999 999999999999888764 99999998653   11  233  6555


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +...-...      ......++++++.+.|+|||++++.
T Consensus       262 ~~~vlh~~------~d~~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          262 FCRILYSA------NEQLSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             EESCGGGS------CHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EechhccC------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            54221110      0012358999999999999999773

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.29  E-value=3e-11  Score=115.59  Aligned_cols=105  Identities=14%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHH-------HHHHHHhC--CCcEEEEecchhH---HHHhhh
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC-------RDSLQLSG--ITNGYFIATNATS---TFRSIV  213 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a-------~~n~~~~~--~~nv~~~~~d~~~---~~d~iv  213 (336)
                      .+.+|||||||+|.+++.+|+..+..+|+|+|+|+.+++.|       ++|++.+|  ..|++++++|...   .++.. 
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~-  320 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL-  320 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH-
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc-
Confidence            35789999999999999999987777899999999999999       89998888  5799999986542   12111 


Q ss_pred             cCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          214 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       214 snpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                         ...+|.|+++..- +.  .      .....++++.+.|||||++++.
T Consensus       321 ---~~~FDvIvvn~~l-~~--~------d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          321 ---IPQCDVILVNNFL-FD--E------DLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             ---GGGCSEEEECCTT-CC--H------HHHHHHHHHHTTCCTTCEEEES
T ss_pred             ---cCCCCEEEEeCcc-cc--c------cHHHHHHHHHHhCCCCeEEEEe
Confidence               2345766654211 10  0      1246778999999999999984

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.29  E-value=7.9e-12  Score=104.20  Aligned_cols=116  Identities=13%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++..  .+++|+|+|+.+++.|+++     ..++.++++| .       ..++..+|.++..
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~-------~~~~~~~D~v~~~   82 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP-K-------EIPDNSVDFILFA   82 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----CTTSEEESSG-G-------GSCTTCEEEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-C-------CCCCCceEEEEEc
Confidence            5689999999999999999886  3999999999999999887     4579999998 1       2255678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH------------HHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE------------VMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~l~~~g~~~~~~  287 (336)
                      ..-.+..        ....+++++.+.|+|||++++..-...            ..+.+.++++  ||.....
T Consensus        83 ~~l~~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~  145 (170)
T 3i9f_A           83 NSFHDMD--------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKR  145 (170)
T ss_dssp             SCSTTCS--------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEE
T ss_pred             cchhccc--------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEc
Confidence            4333221        235899999999999999999531110            1335556665  8776544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.29  E-value=2.7e-11  Score=114.16  Aligned_cols=104  Identities=15%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ +++++..+|+.+.    +  |. .+|.++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~--p~-~~D~v~  273 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET----I--PD-GADVYL  273 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC----C--CS-SCSEEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC----C--CC-CceEEE
Confidence            357999999999999999999999999999999 9999999999988876 5799999998631    1  32 467665


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +...-.+.      ......++++++++.|+|||++++.
T Consensus       274 ~~~vlh~~------~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          274 IKHVLHDW------DDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             EESCGGGS------CHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             hhhhhccC------CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            54221110      0111247999999999999999983

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.28  E-value=1.1e-11  Score=109.21  Aligned_cols=100  Identities=18%  Similarity=0.281  Sum_probs=79.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCC-eEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG-KLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~-~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++..+ .+++++|+|+.+++.|++++...+..++.+..+|+...+      ++. .+|.+++
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~Ii~  164 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF------PPKAPYDVIIV  164 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------GGGCCEEEEEE
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCC------CCCCCccEEEE
Confidence            56899999999999999999977 899999999999999999999988888999999973221      122 2677766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  267 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~  267 (336)
                      ...-++              +.+.+.+.|+|||++++.++..
T Consensus       165 ~~~~~~--------------~~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          165 TAGAPK--------------IPEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CSBBSS--------------CCHHHHHTEEEEEEEEEEECSS
T ss_pred             CCcHHH--------------HHHHHHHhcCCCcEEEEEEecC
Confidence            533222              2246788999999999988653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.27  E-value=7.7e-11  Score=107.31  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=76.1

Q ss_pred             CCeEEEEeccccHHHHH----HHHhCCCCeE--EEEecChHHHHHHHHHHHHh-CCCcEEE--EecchhHHHHhh-hcCC
Q 019743          147 QPLVVDIGSGNGLFLLG----MARKRKDLNF--LGLEVNGKLVTHCRDSLQLS-GITNGYF--IATNATSTFRSI-VASY  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~----la~~~p~~~v--~giDis~~~l~~a~~n~~~~-~~~nv~~--~~~d~~~~~d~i-vsnp  216 (336)
                      +.+|||||||+|.++..    ++.++|+..+  +|+|+|++|++.|++++... ++.++.+  .++++.+..... ...+
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE  132 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence            45899999999987654    3445677754  99999999999999988653 4566654  456655431110 0124


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +.++|.|+....-.|..        ...+++++++++|||||++++..
T Consensus       133 ~~~fD~V~~~~~l~~~~--------d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVK--------DIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             CCCEEEEEEESCGGGCS--------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEeeeeeecC--------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            56789887664333211        12489999999999999999853

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.27  E-value=1.1e-11  Score=108.26  Aligned_cols=101  Identities=16%  Similarity=0.254  Sum_probs=79.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhC-----CCcEEEEecchhHHHHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~-----~~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      +.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|++++..++     ..++.++++|+....   .  ++..+
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~--~~~~f  152 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---A--EEAPY  152 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC---G--GGCCE
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc---c--cCCCc
Confidence            5799999999999999999884 66899999999999999999998865     468999999986421   1  13346


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      |.++...+-+              .+++.+.+.|+|||++++.+..
T Consensus       153 D~i~~~~~~~--------------~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          153 DAIHVGAAAP--------------VVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEEEECSBBS--------------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             CEEEECCchH--------------HHHHHHHHhcCCCcEEEEEEec
Confidence            8776553322              3346788999999999997653

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.26  E-value=1.8e-11  Score=105.46  Aligned_cols=124  Identities=10%  Similarity=0.078  Sum_probs=87.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..+. +++|+|+|+.+++.|+++...  ..++.++++|+.+.     ..++..+|.++..
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~-----~~~~~~fD~v~~~  114 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL-----DFPSASFDVVLEK  114 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC-----CSCSSCEEEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC-----CCCCCcccEEEEC
Confidence            578999999999999999988654 899999999999999998753  35799999998653     2245667877653


Q ss_pred             C---------CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCC
Q 019743          227 C---------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  282 (336)
Q Consensus       227 ~---------~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  282 (336)
                      .         .++|....++  .....++++++.++|+|||.+++.+....  ......+...++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~li~~~~~~~--~~~~~~~~~~~~  175 (215)
T 2pxx_A          115 GTLDALLAGERDPWTVSSEG--VHTVDQVLSEVSRVLVPGGRFISMTSAAP--HFRTRHYAQAYY  175 (215)
T ss_dssp             SHHHHHTTTCSCTTSCCHHH--HHHHHHHHHHHHHHEEEEEEEEEEESCCH--HHHHHHHCCGGG
T ss_pred             cchhhhccccccccccccch--hHHHHHHHHHHHHhCcCCCEEEEEeCCCc--HHHHHHHhcccc
Confidence            2         2233221111  12346899999999999999999765432  223344444443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.26  E-value=2.2e-11  Score=111.99  Aligned_cols=115  Identities=14%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-------CCCcEEEEecchhHHH-HhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------GITNGYFIATNATSTF-RSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-------~~~nv~~~~~d~~~~~-d~ivsnpp~  218 (336)
                      ..+|||||||+|.++..+++. +..+++|+|+|+.|++.|+++....       +..++.++++|+.... ...+..++.
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            568999999999999999874 5789999999999999999998765       3457999999987530 001222345


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+|.++..+.-.|.-    .+......+++++.++|+|||.+++.+..
T Consensus       114 ~fD~V~~~~~l~~~~----~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          114 CFDICSCQFVCHYSF----ESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CEEEEEEETCGGGGG----GSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEEEEecchhhcc----CCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            789887765333210    01112358999999999999999997754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.26  E-value=2.2e-11  Score=112.44  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++..+ +.+|+|+|+|+.+++.|+++++.+++.|+.++++|+.+...     ++..+|.++.
T Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Iv~  150 (317)
T 1dl5_A           76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPYDVIFV  150 (317)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-----cCCCeEEEEE
Confidence            57999999999999999999876 47899999999999999999999998899999999865311     1345787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ..+-++.              .+.+.+.|||||++++....
T Consensus       151 ~~~~~~~--------------~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          151 TVGVDEV--------------PETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CSBBSCC--------------CHHHHHHEEEEEEEEEEBCB
T ss_pred             cCCHHHH--------------HHHHHHhcCCCcEEEEEECC
Confidence            5433321              15677899999999997654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.26  E-value=2.2e-11  Score=110.20  Aligned_cols=109  Identities=17%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             CCeEEEEeccc---cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC-------C
Q 019743          147 QPLVVDIGSGN---GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-------Y  216 (336)
Q Consensus       147 ~~~vLDiGcGs---G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn-------p  216 (336)
                      ..+|||||||+   |.++..+++..|+.+|+++|+|+.|++.|++++..  ..+++++++|+.+. +.+.++       +
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~-~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDP-EYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCH-HHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCc-hhhhccchhhccCC
Confidence            36899999999   99887777788999999999999999999998742  35799999998653 111111       1


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...++.+++...-.+...      .....+++++.+.|+|||++++..
T Consensus       155 ~~~~d~v~~~~vlh~~~d------~~~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSP------DVVDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             TTSCCEEEETTTGGGSCT------TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCEEEEEechhhhCCc------HHHHHHHHHHHHhCCCCcEEEEEE
Confidence            124565554322111110      023589999999999999999954

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=7.9e-12  Score=111.97  Aligned_cols=119  Identities=14%  Similarity=0.116  Sum_probs=87.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++  +..+++|+|+|+.|++.|+++.      |+.++++|+.+.     +.++..+|.++..
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~-----~~~~~~fD~v~~~  101 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENL-----ALPDKSVDGVISI  101 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSC-----CSCTTCBSEEEEE
T ss_pred             CCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhC-----CCCCCCEeEEEEc
Confidence            57999999999999999997  5789999999999999886543      799999998652     2245678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----------------------HHHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----------------------EVMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------~~~~~~~~~l~~~g~~  283 (336)
                      ..-.+.        .....+++++.++|| ||++++.+...                       ...+.+. ++++.||.
T Consensus       102 ~~l~~~--------~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~  171 (261)
T 3ege_A          102 LAIHHF--------SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKR  171 (261)
T ss_dssp             SCGGGC--------SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCS
T ss_pred             chHhhc--------cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCC
Confidence            432221        123589999999999 99776633110                       0123455 88889997


Q ss_pred             ceeee
Q 019743          284 KLVLV  288 (336)
Q Consensus       284 ~~~~~  288 (336)
                      .+...
T Consensus       172 ~v~~~  176 (261)
T 3ege_A          172 RVEAI  176 (261)
T ss_dssp             EEEEE
T ss_pred             ceeEE
Confidence            66543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.25  E-value=2.2e-11  Score=114.54  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=81.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .+++++.+|+++. +.-+   |..+|.+++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~---p~~~D~v~~  254 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR-DVPF---PTGFDAVWM  254 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS-SCCC---CCCCSEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc-CCCC---CCCcCEEEE
Confidence            57999999999999999999999999999999 9999999999887776 4799999998642 0001   345677665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.....      ....++++++++.|+|||++++.
T Consensus       255 ~~vlh~~~~------~~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          255 SQFLDCFSE------EEVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             ESCSTTSCH------HHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             echhhhCCH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            432211000      12247899999999999999883

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.24  E-value=3.6e-12  Score=114.54  Aligned_cols=135  Identities=13%  Similarity=-0.004  Sum_probs=89.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC--C---------------------------Cc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG--I---------------------------TN  197 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~--~---------------------------~n  197 (336)
                      +.+|||||||+|.+++.++... -.+|+|+|+|+.|++.|+++++...  .                           .+
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            5689999999998887776553 2379999999999999998875431  0                           12


Q ss_pred             EE-EEecchhHHHHhhhc-CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH--------
Q 019743          198 GY-FIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------  267 (336)
Q Consensus       198 v~-~~~~d~~~~~d~ivs-npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~--------  267 (336)
                      +. ++++|+.+..  .+. .+..++|.|+..+.-.+..    .......+++++++++|||||.+++.....        
T Consensus       135 i~~~~~~D~~~~~--~~~~~~~~~fD~V~~~~~l~~i~----~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~  208 (263)
T 2a14_A          135 VKRVLKCDVHLGN--PLAPAVLPLADCVLTLLAMECAC----CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  208 (263)
T ss_dssp             EEEEEECCTTSSS--TTTTCCCCCEEEEEEESCHHHHC----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hheEEeccccCCC--CCCccccCCCCEeeehHHHHHhc----CCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCC
Confidence            44 7888876520  010 0134678877654211100    001123588999999999999999953110        


Q ss_pred             -------HHHHHHHHHHHHcCCcceeee
Q 019743          268 -------EVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       268 -------~~~~~~~~~l~~~g~~~~~~~  288 (336)
                             --.+.+.+.+.+.||......
T Consensus       209 ~~~~~~~~~~~~l~~~l~~aGF~i~~~~  236 (263)
T 2a14_A          209 REFSCVALEKGEVEQAVLDAGFDIEQLL  236 (263)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             eEeeccccCHHHHHHHHHHCCCEEEEEe
Confidence                   024578889999999866543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.24  E-value=4.9e-11  Score=112.65  Aligned_cols=102  Identities=10%  Similarity=0.063  Sum_probs=83.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh---------------CCCcEEEEecchhHHHHh
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---------------GITNGYFIATNATSTFRS  211 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~---------------~~~nv~~~~~d~~~~~d~  211 (336)
                      +.+|||+|||||.+++.+|++.+..+|+++|+++.+++.|++|++.+               ++++++++++|+......
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            56899999999999999999987788999999999999999999999               887899999999875432


Q ss_pred             hhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          212 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       212 ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .    +..+|.|++.   |..         ....+++.+.+.|++||.+++..
T Consensus       128 ~----~~~fD~I~lD---P~~---------~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 R----HRYFHFIDLD---PFG---------SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             S----TTCEEEEEEC---CSS---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c----cCCCCEEEeC---CCC---------CHHHHHHHHHHhcCCCCEEEEEe
Confidence            1    3357776643   321         11488999999999999998854

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.24  E-value=4.1e-11  Score=113.35  Aligned_cols=108  Identities=14%  Similarity=0.203  Sum_probs=77.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--------------------------------------CeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~--------------------------------------~~v~giDis~~~l~~a~~  188 (336)
                      +..++|.+||||.+++..|....+                                      .+++|+|+|+.|++.|++
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            568999999999999998875332                                      569999999999999999


Q ss_pred             HHHHhCCCc-EEEEecchhHH-----HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCc--CCcEE
Q 019743          189 SLQLSGITN-GYFIATNATST-----FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV--HDGKV  260 (336)
Q Consensus       189 n~~~~~~~n-v~~~~~d~~~~-----~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~l  260 (336)
                      |++.+|+.+ +++.++|+.+.     +|.+++||||...     ..      ....    ...+.+.+.+.||  +||.+
T Consensus       275 Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r-----l~------~~~~----l~~ly~~lg~~lk~~~g~~~  339 (384)
T 3ldg_A          275 NAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER-----LL------DDKA----VDILYNEMGETFAPLKTWSQ  339 (384)
T ss_dssp             HHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT-----TS------CHHH----HHHHHHHHHHHHTTCTTSEE
T ss_pred             HHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc-----cC------CHHH----HHHHHHHHHHHHhhCCCcEE
Confidence            999999874 99999998763     5666777776211     00      0011    1233333444444  59999


Q ss_pred             EEEeCcHHH
Q 019743          261 FLQSDIEEV  269 (336)
Q Consensus       261 ~~~~~~~~~  269 (336)
                      ++-+....+
T Consensus       340 ~iit~~~~l  348 (384)
T 3ldg_A          340 FILTNDTDF  348 (384)
T ss_dssp             EEEESCTTH
T ss_pred             EEEECCHHH
Confidence            998876553

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.23  E-value=4.9e-11  Score=109.66  Aligned_cols=134  Identities=9%  Similarity=-0.018  Sum_probs=89.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---------HHhhhcCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---------FRSIVASY  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---------~d~ivsnp  216 (336)
                      +.+|||+|||+|..++.+|... +..+|+|+|+++.+++.+++|++++++.|++++++|+.+.         ||.|+.+|
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~  182 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP  182 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcC
Confidence            5799999999999999999874 5689999999999999999999999999999999998542         45555566


Q ss_pred             CCeEEEEEeeCCCCCCCc-----chhhhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          217 PGKLILVSIQCPNPDFNR-----PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~-----~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      |++-..+.-..||.....     .-..-...+.+++..+.++|+ ||+++..|..   .+..+.+...+.+++
T Consensus       183 PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~  254 (309)
T 2b9e_A          183 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNP  254 (309)
T ss_dssp             CCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             CcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCC
Confidence            654322221223321100     000111235788999999887 9988876532   222334555565553

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.23  E-value=4.4e-11  Score=111.57  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=79.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++. +..+++|+|+|+ |++.|+++++.+++ .+++++++|+.+.     .-|+..+|.++.
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Ivs  137 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVIIS  137 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEEE
T ss_pred             CCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-----cCCCCcEEEEEE
Confidence            578999999999999999987 356999999997 99999999999888 6899999998753     124466787765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                      ... ++.  ..+  ....+.++.++.++|||||.++
T Consensus       138 ~~~-~~~--l~~--~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          138 EWM-GYF--LLF--ESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCC-BTT--BTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCc-hhh--ccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence            421 110  000  0123578999999999999987

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.22  E-value=1.5e-10  Score=109.19  Aligned_cols=121  Identities=14%  Similarity=0.130  Sum_probs=81.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCC----------
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY----------  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnp----------  216 (336)
                      +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+.|++.|++|++.++++|++|+++|+.+.+.....+.          
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            357999999999999999986  46899999999999999999999999999999999987543322111          


Q ss_pred             -CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE-EeCcHHHHHHHHHHHHHcCCcce
Q 019743          217 -PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       217 -p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~l~~~g~~~~  285 (336)
                       ...+|.+++..|-.              .+..++.+.|+++|.++. .++....+..+..+..  +|...
T Consensus       292 ~~~~fD~Vv~dPPr~--------------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~--~y~~~  346 (369)
T 3bt7_A          292 KSYQCETIFVDPPRS--------------GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQ--THKVE  346 (369)
T ss_dssp             GGCCEEEEEECCCTT--------------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH--HEEEE
T ss_pred             ccCCCCEEEECcCcc--------------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh--CcEEE
Confidence             02578776542211              111233444556776655 4444444555544432  45443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.22  E-value=4.3e-11  Score=99.50  Aligned_cols=128  Identities=13%  Similarity=0.056  Sum_probs=88.0

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~~  220 (336)
                      ..+|||+|||+|.++..+++. .|+.+++|+|+|+ +++.          .++.++++|+.+.     +...+  ++..+
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~--~~~~~   89 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV--GDSKV   89 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH--TTCCE
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC--CCCce
Confidence            569999999999999999998 4779999999999 6532          5799999998653     11113  45678


Q ss_pred             EEEEeeCCCCCCCcchhh---hhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          221 ILVSIQCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~---~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      |.++.+.+..+.......   .......+++++.++|+|||.+++.+........+.+.+... |..+...
T Consensus        90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (180)
T 1ej0_A           90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVR  159 (180)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEE
T ss_pred             eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEee
Confidence            888776543332221111   111236899999999999999999654444455666666664 5554443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.22  E-value=4e-11  Score=113.62  Aligned_cols=108  Identities=17%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC--------------------------------------CCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK--------------------------------------DLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p--------------------------------------~~~v~giDis~~~l~~a~~  188 (336)
                      +..+||.|||||.+++.+|....                                      ..+++|+|+|+.|++.|++
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            56899999999999999987632                                      2679999999999999999


Q ss_pred             HHHHhCCC-cEEEEecchhHH-----HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCc--CCcEE
Q 019743          189 SLQLSGIT-NGYFIATNATST-----FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV--HDGKV  260 (336)
Q Consensus       189 n~~~~~~~-nv~~~~~d~~~~-----~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~l  260 (336)
                      |+..+++. +++|.++|+.+.     +|.|++||||..              +... ......+.+.+.+.|+  +||.+
T Consensus       276 Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~--------------rl~~-~~~l~~ly~~lg~~lk~~~g~~~  340 (385)
T 3ldu_A          276 NAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGE--------------RLED-KDSVKQLYKELGYAFRKLKNWSY  340 (385)
T ss_dssp             HHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCC--------------SHHH-HHHHHHHHHHHHHHHHTSBSCEE
T ss_pred             HHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcC--------------ccCC-HHHHHHHHHHHHHHHhhCCCCEE
Confidence            99999986 699999998763     566666666621              0000 0011234444444444  48999


Q ss_pred             EEEeCcHHH
Q 019743          261 FLQSDIEEV  269 (336)
Q Consensus       261 ~~~~~~~~~  269 (336)
                      ++-+.....
T Consensus       341 ~iit~~~~l  349 (385)
T 3ldu_A          341 YLITSYEDF  349 (385)
T ss_dssp             EEEESCTTH
T ss_pred             EEEECCHHH
Confidence            888876553

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.22  E-value=9e-11  Score=112.56  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=81.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+.|++.|++|++.++++ ++|+++|+.+.+       +..+|.++++
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~-------~~~fD~Vv~d  360 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS-------VKGFDTVIVD  360 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC-------CTTCSEEEEC
T ss_pred             CCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC-------ccCCCEEEEc
Confidence            568999999999999999987  568999999999999999999999988 999999987631       1135555553


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHH
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ  275 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  275 (336)
                      .|-.          -..+.+++.+. .|+|+|.+++.++...++..+..
T Consensus       361 PPr~----------g~~~~~~~~l~-~l~p~givyvsc~p~tlarDl~~  398 (425)
T 2jjq_A          361 PPRA----------GLHPRLVKRLN-REKPGVIVYVSCNPETFARDVKM  398 (425)
T ss_dssp             CCTT----------CSCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHHH
T ss_pred             CCcc----------chHHHHHHHHH-hcCCCcEEEEECChHHHHhHHhh
Confidence            2210          11235666664 48999999998876555555443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.22  E-value=4.4e-11  Score=113.54  Aligned_cols=110  Identities=16%  Similarity=0.198  Sum_probs=77.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--------------------------------------CeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~--------------------------------------~~v~giDis~~~l~~a~~  188 (336)
                      +..+||.+||||.+++..|....+                                      .+++|+|+|+.|++.|++
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            467999999999999998875332                                      569999999999999999


Q ss_pred             HHHHhCCC-cEEEEecchhHH-----HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          189 SLQLSGIT-NGYFIATNATST-----FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       189 n~~~~~~~-nv~~~~~d~~~~-----~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      |+..+|+. ++++.++|+.+.     ||.|++||||...   +.        .......+|+.+-+.+.+  -+||.+++
T Consensus       282 Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~r---l~--------~~~~l~~ly~~lg~~lk~--~~g~~~~i  348 (393)
T 3k0b_A          282 NAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGER---LE--------DEEAVRQLYREMGIVYKR--MPTWSVYV  348 (393)
T ss_dssp             HHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCS---HH--------HHHHHHHHHHHHHHHHHT--CTTCEEEE
T ss_pred             HHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccc---cC--------CchhHHHHHHHHHHHHhc--CCCCEEEE
Confidence            99999986 499999998763     5666666666311   00        000111234444444433  35999999


Q ss_pred             EeCcHHH
Q 019743          263 QSDIEEV  269 (336)
Q Consensus       263 ~~~~~~~  269 (336)
                      -+.....
T Consensus       349 it~~~~l  355 (393)
T 3k0b_A          349 LTSYELF  355 (393)
T ss_dssp             EECCTTH
T ss_pred             EECCHHH
Confidence            8876553

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.22  E-value=9.7e-11  Score=113.28  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=94.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|..+..+++..++ .+++|+|+|+.+++.+++|++++|+.|+.++++|+... +..+  ++..+|.+.+
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~-~~~~--~~~~fD~Vl~  336 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKA-PEII--GEEVADKVLL  336 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCC-SSSS--CSSCEEEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhc-chhh--ccCCCCEEEE
Confidence            568999999999999999998776 89999999999999999999999998999999998653 1001  2245676665


Q ss_pred             eCCCCC----CCcchhh----------hhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHc-CCcc
Q 019743          226 QCPNPD----FNRPEHR----------WRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEY-GKGK  284 (336)
Q Consensus       226 ~~~dp~----~~~~~~~----------~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~-g~~~  284 (336)
                      ..|-.-    .+.....          ....+..+++.+.++|||||++++.+..   .+..+.+...+.++ +|..
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~  413 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL  413 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence            432210    0000000          0112368999999999999999986532   22233556667766 4553

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.21  E-value=1.3e-11  Score=108.20  Aligned_cols=101  Identities=17%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC------CCeEEEEecChHHHHHHHHHHHHhC-----CCcEEEEecchhHHHHhhhcC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK------DLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVAS  215 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p------~~~v~giDis~~~l~~a~~n~~~~~-----~~nv~~~~~d~~~~~d~ivsn  215 (336)
                      +.+|||||||+|.++..+++..+      ..+++++|+++.+++.|++++...+     ..++.++++|+...+.     
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----  159 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-----  159 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-----
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-----
Confidence            56899999999999999998754      3699999999999999999998766     5789999999865211     


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +...+|.++....-++              +.+++.+.|+|||++++....
T Consensus       160 ~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEESC
T ss_pred             cCCCccEEEECCchHH--------------HHHHHHHHhcCCCEEEEEEec
Confidence            1135787766543322              236788999999999997753

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.20  E-value=4.9e-11  Score=103.83  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=86.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.      +|+|+|+.+++.|+++       ++.++++|+...     +.++..+|.++..
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~-----~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENL-----PLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBC-----CSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccC-----CCCCCCeeEEEEc
Confidence            468999999999999988755      9999999999999876       578899987542     2245567877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----------------------HHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----------------------VMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~~~~~~~~l~~~g~~  283 (336)
                      ..-.+.        .....+++++.+.|+|||.+++......                       ..+.+.+++++.||.
T Consensus       110 ~~l~~~--------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~  181 (219)
T 1vlm_A          110 TTICFV--------DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFE  181 (219)
T ss_dssp             SCGGGS--------SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred             chHhhc--------cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCe
Confidence            322111        1235899999999999999999542110                       135677788888888


Q ss_pred             ceeeecc
Q 019743          284 KLVLVQD  290 (336)
Q Consensus       284 ~~~~~~d  290 (336)
                      .+....+
T Consensus       182 ~~~~~~~  188 (219)
T 1vlm_A          182 EFKVVQT  188 (219)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecc
Confidence            7766655

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.20  E-value=4.5e-11  Score=103.18  Aligned_cols=96  Identities=10%  Similarity=0.138  Sum_probs=75.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.++..+     .. +++|+|+|+.+++.|+++.     .++.++++|+.+.     +.++..+|.++.
T Consensus        37 ~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~~~~~~fD~v~~  101 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEAL-----PFPGESFDVVLL  101 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSC-----CSCSSCEEEEEE
T ss_pred             CCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccC-----CCCCCcEEEEEE
Confidence            578999999999998877     34 8999999999999998876     5688999998652     224567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-.+..        ...++++++.++|+|||.+++.+.
T Consensus       102 ~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A          102 FTTLEFVE--------DVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             ESCTTTCS--------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cChhhhcC--------CHHHHHHHHHHHcCCCCEEEEEec
Confidence            64333211        235899999999999999999653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.19  E-value=8.4e-11  Score=109.00  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .+++++.+|+.+.    +   |..+|.+++.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~~~  240 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE----V---PSNGDIYLLS  240 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC----C---CSSCSEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC----C---CCCCCEEEEc
Confidence            7899999999999999999999999999999 9999999999877665 4799999998652    1   3446776654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..-...      ......++++++++.|+|||++++.
T Consensus       241 ~vl~~~------~~~~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          241 RIIGDL------DEAASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             SCGGGC------CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhccCC------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            321110      0012248999999999999999984

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.19  E-value=1.1e-11  Score=110.56  Aligned_cols=137  Identities=12%  Similarity=-0.010  Sum_probs=93.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-----------------------------Cc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-----------------------------TN  197 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-----------------------------~n  197 (336)
                      +.+|||||||+|.++..+++..+ .+++|+|+|+.|++.|++++...+.                             .+
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            56899999999999999998754 5899999999999999988754320                             12


Q ss_pred             E-EEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----------
Q 019743          198 G-YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----------  266 (336)
Q Consensus       198 v-~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----------  266 (336)
                      + .++++|+.+... .-..++..+|.++..+.-.+.    +........+++++.++|+|||++++....          
T Consensus       136 v~~~~~~d~~~~~~-~~~~~~~~fD~v~~~~~l~~~----~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~  210 (265)
T 2i62_A          136 IKQVLKCDVTQSQP-LGGVSLPPADCLLSTLCLDAA----CPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ  210 (265)
T ss_dssp             EEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHH----CSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             heeEEEeeeccCCC-CCccccCCccEEEEhhhhhhh----cCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence            7 899999865310 000012568887765321100    000113468999999999999999984311          


Q ss_pred             -----HHHHHHHHHHHHHcCCcceeeec
Q 019743          267 -----EEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       267 -----~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                           .-..+.+.+.+.+.||..+....
T Consensus       211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~  238 (265)
T 2i62_A          211 KFSSLPLGWETVRDAVEEAGYTIEQFEV  238 (265)
T ss_dssp             EEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHCCCEEEEEEE
Confidence                 00244788889999998776553

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.19  E-value=3.6e-11  Score=108.05  Aligned_cols=107  Identities=10%  Similarity=0.057  Sum_probs=78.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChH------HHHHHHHHHHHhCC-CcEEEEecc-hhHHHHhhhcCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGK------LVTHCRDSLQLSGI-TNGYFIATN-ATSTFRSIVASY  216 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~------~l~~a~~n~~~~~~-~nv~~~~~d-~~~~~d~ivsnp  216 (336)
                      ++.+|||||||+|.++..+++.. |+.+++|+|+|+.      +++.|++++...++ .+++++++| .... +  ...+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~  119 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD-L--GPIA  119 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC-C--GGGT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc-c--CCCC
Confidence            35799999999999999999985 7799999999997      99999999987776 579999998 3211 1  1114


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +..+|.++....-.+..        ....+++.+.++++|||++++.
T Consensus       120 ~~~fD~v~~~~~l~~~~--------~~~~~~~~~~~l~~~gG~l~~~  158 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFA--------SANALALLFKNMAAVCDHVDVA  158 (275)
T ss_dssp             TCCCSEEEEESCGGGSS--------CHHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCCEEEEEEccchhhCC--------CHHHHHHHHHHHhCCCCEEEEE
Confidence            45678776653221110        1135777777778889999984

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.19  E-value=1.7e-10  Score=110.95  Aligned_cols=131  Identities=11%  Similarity=0.162  Sum_probs=92.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|..+..+++..++.+++|+|+|+.+++.+++|+++++. ++.++++|+..... .+  ++..+|.+.++
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~-~~--~~~~fD~Vl~D  322 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQ-WC--GEQQFDRILLD  322 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHH-HH--TTCCEEEEEEE
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchh-hc--ccCCCCEEEEe
Confidence            5689999999999999999998889999999999999999999999887 47899999865311 11  23446666554


Q ss_pred             CCCCC----CCcchh----------hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          227 CPNPD----FNRPEH----------RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       227 ~~dp~----~~~~~~----------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      .|-..    .+....          .....+.++++.+.+.|||||++++.+..   .+..+.+.+.+.+++
T Consensus       323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~  394 (429)
T 1sqg_A          323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  394 (429)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC
Confidence            33210    000000          00123468999999999999999986621   222345566666663

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.19  E-value=9.3e-11  Score=118.47  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=82.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHh------CCCcEEEEecchhHHHHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLS------GITNGYFIATNATSTFRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~------~~~nv~~~~~d~~~~~d~ivsnpp~~  219 (336)
                      +.+|||||||+|.++..+++.. |..+|+|+|+|+.|++.|++++...      +..+++|+++|+.+.     ..++..
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-----p~~d~s  796 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-----DSRLHD  796 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-----CTTSCS
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-----CcccCC
Confidence            5789999999999999999987 5689999999999999999976543      557899999998763     113456


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      +|.++....-.+..      ......+++++.++|+|| .+++.+.+.+
T Consensus       797 FDlVV~~eVLeHL~------dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          797 VDIGTCLEVIEHME------EDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             CCEEEEESCGGGSC------HHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             eeEEEEeCchhhCC------hHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            78776643222211      111246899999999999 7888776544

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.19  E-value=3.6e-11  Score=107.91  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=78.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.+|||+|||+|.++..+++..|..+++|+|+|+.+++.|+++.     .++.+..+|+...     +.++.++|.++.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~~~~~~fD~v~~  154 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL-----PFSDTSMDAIIR  154 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC-----SBCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhC-----CCCCCceeEEEE
Confidence            357899999999999999999988899999999999999998763     4688999987642     124567888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      .+. +              .+++++.++|+|||++++.+....
T Consensus       155 ~~~-~--------------~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          155 IYA-P--------------CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             ESC-C--------------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             eCC-h--------------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence            532 1              347889999999999999765433

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.18  E-value=7.3e-11  Score=111.56  Aligned_cols=104  Identities=17%  Similarity=0.265  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.+++.+++.. ..+|+|+|+| .|++.|+++++.+++.+ ++++++|+.+.     . .+..+|.++
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~Iv  134 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-----S-LPEKVDVII  134 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-----C-CSSCEEEEE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-----C-cCCcceEEE
Confidence            35789999999999999999883 3599999999 99999999999998864 99999998763     1 235678776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .... .+..  .+  ......+++.+.++|+|||.+++
T Consensus       135 ~~~~-~~~l--~~--e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          135 SEWM-GYFL--LR--ESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             ECCC-BTTB--TT--TCTHHHHHHHHHHHEEEEEEEES
T ss_pred             EcCh-hhcc--cc--hHHHHHHHHHHHhhCCCCeEEEE
Confidence            5321 1100  00  01245789999999999999977

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.18  E-value=5.3e-11  Score=101.84  Aligned_cols=130  Identities=13%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HH---hhhc-CCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FR---SIVA-SYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d---~ivs-npp~~~  220 (336)
                      +.+|||+|||+|.++..++++  ..+|+|+|+++.+           ...++.++++|+.+.  .+   ..+. +....+
T Consensus        26 g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~   92 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKV   92 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred             CCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence            679999999999999999988  7899999999751           346899999998652  11   1121 000256


Q ss_pred             EEEEeeCCCCCCCc--chh-hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecc
Q 019743          221 ILVSIQCPNPDFNR--PEH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       221 d~i~~~~~dp~~~~--~~~-~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d  290 (336)
                      |.+..+.+......  ..+ ......+.+++.+.++|||||.|++.+-.......+.+.+.. .|..+.+.++
T Consensus        93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v~~~kP  164 (191)
T 3dou_A           93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSYKISKP  164 (191)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEEEEECC
T ss_pred             eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEEEEECC
Confidence            77766542211111  111 111234678899999999999999866433334456666644 4766665544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.18  E-value=4e-11  Score=105.05  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=76.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++..  .+++|+|+|+.+++.|+++....+  ++.++++|+...+.     ++..+|.+++.
T Consensus        71 ~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~-----~~~~fD~v~~~  141 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE-----EEKPYDRVVVW  141 (231)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG-----GGCCEEEEEES
T ss_pred             CCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc-----cCCCccEEEEC
Confidence            5689999999999999999985  799999999999999999987665  89999999865211     23457877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ..-++              +.+++.+.|+|||++++.+..
T Consensus       142 ~~~~~--------------~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          142 ATAPT--------------LLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             SBBSS--------------CCHHHHHTEEEEEEEEEEECS
T ss_pred             CcHHH--------------HHHHHHHHcCCCcEEEEEEcC
Confidence            33222              124678899999999997654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.18  E-value=5.3e-11  Score=106.67  Aligned_cols=105  Identities=12%  Similarity=0.116  Sum_probs=70.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||+|.+++.+|++  ..+|+|+|+|+.|++.|++++... .-+..+...+..     ....++..+|.++.
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~-----~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAE-----IPKELAGHFDFVLN  116 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSC-----CCGGGTTCCSEEEE
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccc-----cccccCCCccEEEE
Confidence            3579999999999999999987  579999999999999999987543 112223222210     00011345676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-.++.      ....+.+++.+.++| |||++++...
T Consensus       117 ~~~l~~~~------~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          117 DRLINRFT------TEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             ESCGGGSC------HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhhHhCC------HHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            53221110      112357889999999 9999999653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.18  E-value=1.1e-10  Score=108.33  Aligned_cols=104  Identities=14%  Similarity=0.287  Sum_probs=78.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++. +++++++|+.+.     ..|+..+|.++.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Ivs  111 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIIIS  111 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEEE
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-----cCCCCcccEEEE
Confidence            568999999999999999987 45699999999 5999999999998875 599999998753     124456787765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..+....   .  .......++..+.++|+|||.++.
T Consensus       112 ~~~~~~l---~--~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFL---L--YESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTB---S--TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eCchhhc---c--cHHHHHHHHHHHHhhcCCCeEEEE
Confidence            4221110   0  011245788999999999999873

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.17  E-value=1.3e-10  Score=101.03  Aligned_cols=101  Identities=12%  Similarity=0.127  Sum_probs=75.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++. + .+++|+|+|+.+++.|+++.       ..++++|+... +  .+.++..+|.++..
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~-~--~~~~~~~fD~v~~~  100 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETM-D--MPYEEEQFDCVIFG  100 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTC-C--CCSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhc-C--CCCCCCccCEEEEC
Confidence            578999999999999999988 4 89999999999999987653       26788887642 1  12244567877665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  267 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~  267 (336)
                      ..-.+..        ....+++++.+.|+|||.+++.+...
T Consensus       101 ~~l~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A          101 DVLEHLF--------DPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             SCGGGSS--------CHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             ChhhhcC--------CHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            3221110        12489999999999999999976543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.17  E-value=8.8e-11  Score=109.69  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=83.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++++.+|+.+. +. +  ++..+|.+++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~-~--~~~~~D~v~~  254 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDA-RN-F--EGGAADVVML  254 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCG-GG-G--TTCCEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccC-cc-c--CCCCccEEEE
Confidence            57999999999999999999999999999999 88999999999888764 599999998653 10 0  3445787776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+.      ......++++++.+.|+|||++++.
T Consensus       255 ~~vlh~~------~~~~~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          255 NDCLHYF------DAREAREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             ESCGGGS------CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ecccccC------CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            5322111      0112358999999999999999884

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.17  E-value=7.1e-12  Score=119.90  Aligned_cols=127  Identities=15%  Similarity=0.138  Sum_probs=89.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~  220 (336)
                      ..+|||+|||+|.+++.++++. +..+++|+|+++.+++.|         .++.++++|+..     .||.|++||||..
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGEAFDLILGNPPYGI  110 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSSCEEEEEECCCCCC
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCccCCCCEEEECcCccC
Confidence            4589999999999999999875 678999999999999877         468999999875     3788888888842


Q ss_pred             EEEEee----CCCCCCCcchh------hhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCC
Q 019743          221 ILVSIQ----CPNPDFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGK  282 (336)
Q Consensus       221 d~i~~~----~~dp~~~~~~~------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~  282 (336)
                      ......    .++.......+      .....+..|++.+.+.|+|||++.+.+...    ...+.+++.+.+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          111 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             cccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence            110000    00000000000      001135689999999999999999976542    245678888877776

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.16  E-value=1.1e-10  Score=109.29  Aligned_cols=103  Identities=13%  Similarity=0.198  Sum_probs=78.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ .+++++++|+.+.     . .+..+|.++.
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~-----~-~~~~~D~Ivs  122 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-----S-LPEQVDIIIS  122 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEEE
T ss_pred             cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC-----C-CCCceeEEEE
Confidence            578999999999999999886 467999999996 88999999998888 5799999998753     1 2345777765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..+..+.      ........+..+.++|||||.+++.
T Consensus       123 ~~~~~~~------~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          123 EPMGYML------FNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCBTTB------TTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eCchhcC------ChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            4221110      0012246777889999999999863

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.16  E-value=7.3e-11  Score=110.17  Aligned_cols=133  Identities=10%  Similarity=0.111  Sum_probs=95.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-----CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-----LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASY  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-----~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnp  216 (336)
                      ..+|||+|||||.+++.+++..+.     .+++|+|+++.+++.|+.|+..++. ++.+.++|++.     .||.|++||
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVISDL  209 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEEEECC
Confidence            468999999999999999988654     7899999999999999999998887 68999999864     378888888


Q ss_pred             CCeEEEEEeeCCCCC--CCcchhhhh-cchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcCCcc
Q 019743          217 PGKLILVSIQCPNPD--FNRPEHRWR-MVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       217 p~~~d~i~~~~~dp~--~~~~~~~~~-l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g~~~  284 (336)
                      |+..    ....+.+  +........ ..+..+++.+.+.|+|||++++.+..    ..+...+++.+.+.++..
T Consensus       210 Pfg~----~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~  280 (344)
T 2f8l_A          210 PVGY----YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIE  280 (344)
T ss_dssp             CCSE----ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEE
T ss_pred             CCCC----cCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEE
Confidence            8632    1000000  000000001 12347899999999999999997621    133567788887777643

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.14  E-value=5e-11  Score=107.66  Aligned_cols=107  Identities=15%  Similarity=0.226  Sum_probs=75.6

Q ss_pred             CCeEEEEeccccH----HHHHHHHhCC----CCeEEEEecChHHHHHHHHHHH--------------H---------hC-
Q 019743          147 QPLVVDIGSGNGL----FLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQ--------------L---------SG-  194 (336)
Q Consensus       147 ~~~vLDiGcGsG~----~~~~la~~~p----~~~v~giDis~~~l~~a~~n~~--------------~---------~~-  194 (336)
                      ..+|+|+|||||.    +++.|++..+    +.+|+|+|+|+.|++.|++++-              +         .+ 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999999    6777777644    4799999999999999998751              0         00 


Q ss_pred             C-------CcEEEEecchhHHHHhhhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          195 I-------TNGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       195 ~-------~nv~~~~~d~~~~~d~ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .       .+|.|.++|+.+. +  +  | +..+|.|+....-.++.      ....+++++.+++.|+|||++++.+
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~-~--~--~~~~~fDlI~crnvliyf~------~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEK-Q--Y--NVPGPFDAIFCRNVMIYFD------KTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCS-S--C--CCCCCEEEEEECSSGGGSC------HHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eeechhhcccCeEEecccCCC-C--C--CcCCCeeEEEECCchHhCC------HHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            0       3689999998651 0  1  2 24588877642211111      1234689999999999999999844

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.14  E-value=2.3e-11  Score=110.57  Aligned_cols=137  Identities=12%  Similarity=0.010  Sum_probs=87.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-----------------CC-------------C
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----------------GI-------------T  196 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-----------------~~-------------~  196 (336)
                      +.+|||||||+|.++..++. .+..+|+|+|+|+.|++.|++++...                 +.             .
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            57899999999995554443 34579999999999999998865421                 10             0


Q ss_pred             cEEEEecchhHHHHhh-hcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC----------
Q 019743          197 NGYFIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----------  265 (336)
Q Consensus       197 nv~~~~~d~~~~~d~i-vsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~----------  265 (336)
                      .+.++++|+......- .+.|+.++|.|+..+.-.+...    ......++++++.++|||||++++...          
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~  226 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP----DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE  226 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS----SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETT
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcC----CHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCC
Confidence            1566777875421100 0124456888876642111000    001246899999999999999998420          


Q ss_pred             -----cHHHHHHHHHHHHHcCCcceeee
Q 019743          266 -----IEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       266 -----~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                           ..-..+.+.++|.+.||..+...
T Consensus       227 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          227 ARLTVVPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             eeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence                 00124577888889999876544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.14  E-value=2.3e-10  Score=107.22  Aligned_cols=101  Identities=12%  Similarity=0.066  Sum_probs=76.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|+|||||+|.+++.+++++|+.+++..|. |.+++.|++++...+.++|+++.+|+++.       |+...|.+++.
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~-------~~~~~D~~~~~  251 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD-------PLPEADLYILA  251 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS-------CCCCCSEEEEE
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC-------CCCCceEEEee
Confidence            46899999999999999999999999999997 88999999987666667899999997542       22223555443


Q ss_pred             CCCC-CCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..-. |.       .....++++++++.|+|||++++
T Consensus       252 ~vlh~~~-------d~~~~~iL~~~~~al~pgg~lli  281 (353)
T 4a6d_A          252 RVLHDWA-------DGKCSHLLERIYHTCKPGGGILV  281 (353)
T ss_dssp             SSGGGSC-------HHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             eecccCC-------HHHHHHHHHHHHhhCCCCCEEEE
Confidence            2111 10       01124889999999999999888

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.14  E-value=3.1e-10  Score=97.25  Aligned_cols=111  Identities=13%  Similarity=0.214  Sum_probs=77.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++|+.     +++++++|+.+.        |..+|.++.+
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~--------~~~~D~v~~~  117 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI--------SGKYDTWIMN  117 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC--------CCCEEEEEEC
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC--------CCCeeEEEEC
Confidence            568999999999999999987 45579999999999999998874     689999998763        1344554443


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  281 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g  281 (336)
                      .|-.+..  .    ....++++.+.+.|   |.+++.... .....+.+.+...|
T Consensus       118 ~p~~~~~--~----~~~~~~l~~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          118 PPFGSVV--K----HSDRAFIDKAFETS---MWIYSIGNA-KARDFLRREFSARG  162 (200)
T ss_dssp             CCC-------------CHHHHHHHHHHE---EEEEEEEEG-GGHHHHHHHHHHHE
T ss_pred             CCchhcc--C----chhHHHHHHHHHhc---CcEEEEEcC-chHHHHHHHHHHCC
Confidence            2221110  0    12247888888888   445554433 33566777788877

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.14  E-value=8.6e-11  Score=105.56  Aligned_cols=96  Identities=8%  Similarity=-0.042  Sum_probs=78.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH----hCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~----~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||||||+|.++..+++. + .+++++|+++.+++.|++++..    ..-.+++++.+|+.+..        ..+|.
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--------~~fD~  142 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--------KKYDL  142 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--------CCEEE
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--------hhCCE
Confidence            468999999999999999988 7 8999999999999999987632    12357999999987531        34687


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      |++..++|.             .+++.+.+.|+|||.+++...
T Consensus       143 Ii~d~~dp~-------------~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          143 IFCLQEPDI-------------HRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             EEESSCCCH-------------HHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEECCCChH-------------HHHHHHHHhcCCCcEEEEEcC
Confidence            777766653             488999999999999999653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.12  E-value=1.3e-10  Score=103.85  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=75.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.  ..+++|+|+|+.|++.|+++..    .+  ++++|+.+.     +.++..+|.++..
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~-----~~~~~~fD~v~~~  121 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDL-----PFPSGAFEAVLAL  121 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSC-----CSCTTCEEEEEEC
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHC-----CCCCCCEEEEEEc
Confidence            578999999999999999987  5799999999999999988753    23  778887652     2245668877653


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ..-.     |..  .....+++++.++|+|||.+++.+..
T Consensus       122 ~~~~-----~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          122 GDVL-----SYV--ENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SSHH-----HHC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             chhh-----hcc--ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            2110     000  01358999999999999999997654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.12  E-value=3.4e-10  Score=96.33  Aligned_cols=131  Identities=14%  Similarity=0.159  Sum_probs=82.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC---------CeEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHH--HHhhhc
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD---------LNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATST--FRSIVA  214 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~---------~~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~--~d~ivs  214 (336)
                      +.+|||||||+|.+++.+++..+.         .+++|+|+|+.+           ...+++++ ++|+...  .+.+..
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~~   91 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRILE   91 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHHH
Confidence            578999999999999999999754         899999999842           24678899 9987542  111111


Q ss_pred             -CCCCeEEEEEeeCCCCCCCc--chh-hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          215 -SYPGKLILVSIQCPNPDFNR--PEH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       215 -npp~~~d~i~~~~~dp~~~~--~~~-~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                       .+...+|.++..+...+...  ..+ ........+++++.++|+|||++++.+........+.+.+... |..+...+
T Consensus        92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~  169 (196)
T 2nyu_A           92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIK  169 (196)
T ss_dssp             HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEEC
T ss_pred             hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEEC
Confidence             12346787776532111000  000 0111235889999999999999999754333334455555543 54444443

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.12  E-value=1.2e-10  Score=102.09  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+|||+|.++..+++..+  +++|+|+|+.|++.|+++.     .++.++++|+.+.     . .+..+|.++..
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~-~~~~~D~v~~~  107 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDF-----R-LGRKFSAVVSM  107 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTC-----C-CSSCEEEEEEC
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHc-----c-cCCCCcEEEEc
Confidence            57899999999999999999864  8999999999999998764     4689999998653     1 13457877633


Q ss_pred             CC-CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~-dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +. -.+..     .......+++++.+.|+|||.+++..
T Consensus       108 ~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          108 FSSVGYLK-----TTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             TTGGGGCC-----SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CchHhhcC-----CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            21 11110     00123589999999999999999954

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.11  E-value=2.8e-10  Score=107.13  Aligned_cols=103  Identities=15%  Similarity=0.254  Sum_probs=76.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||||.+++..|+.. ..+|+|+|.|+ +++.|+++++.+++. +++++++|+.+. +     .|..+|.++.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~-----lpe~~Dvivs  155 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV-E-----LPEQVDAIVS  155 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC-C-----CSSCEEEEEC
T ss_pred             CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee-c-----CCccccEEEe
Confidence            5689999999999998888774 45899999996 889999999999986 599999998763 1     2456776654


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ......   ..+  ....+.++....++|+|||.++-
T Consensus       156 E~~~~~---l~~--e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          156 EWMGYG---LLH--ESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCCBTT---BTT--TCSHHHHHHHHHHHEEEEEEEES
T ss_pred             eccccc---ccc--cchhhhHHHHHHhhCCCCceECC
Confidence            321111   000  11346788888899999998764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.11  E-value=3.3e-10  Score=107.21  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=90.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHHHH-hhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFR-SIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~~d-~ivsnpp~~~d~  222 (336)
                      +.+|||++||||.+++.+|++.++ .+|+++|+++.+++.+++|++.+++++  ++++++|+.+.+. .    .+..+|.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~----~~~~fD~  128 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE----WGFGFDY  128 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC----CSSCEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh----hCCCCcE
Confidence            568999999999999999998655 689999999999999999999999976  9999999987543 2    1345787


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHH--HHHHHHHHHcCCc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM--LRMKQQFLEYGKG  283 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~l~~~g~~  283 (336)
                      |+++   |. .        ....+++.+.+.|++||.+++.+......  ......+..+|..
T Consensus       129 V~lD---P~-g--------~~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~  179 (392)
T 3axs_A          129 VDLD---PF-G--------TPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMAR  179 (392)
T ss_dssp             EEEC---CS-S--------CCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSB
T ss_pred             EEEC---CC-c--------CHHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCc
Confidence            7654   42 0        12368899999999999999966332200  0334455556544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.10  E-value=1.1e-09  Score=97.00  Aligned_cols=125  Identities=10%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|-+++.++...|..+++|+|+++.|++.+++|+..+|+. .++.+.|....      -|+..+|.+.++
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~------~p~~~~DvaL~l  205 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLED------RLDEPADVTLLL  205 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTS------CCCSCCSEEEET
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeeccc------CCCCCcchHHHH
Confidence            56899999999999999999999999999999999999999999998876 78888886542      255566766554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE-Ee---------CcHHHHHHHHHHHHHcCCcce
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QS---------DIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~-~~---------~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      -.-|      +-.+.-....+ .+.+.|+|+|.++= .+         -...|.+++.+.+.+.|+..-
T Consensus       206 kti~------~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~  267 (281)
T 3lcv_B          206 KTLP------CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQ  267 (281)
T ss_dssp             TCHH------HHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHH------HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence            2111      11000011344 67789999997654 22         113466677777777887543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.09  E-value=4e-10  Score=101.20  Aligned_cols=128  Identities=11%  Similarity=0.078  Sum_probs=80.4

Q ss_pred             CeEEEEeccc--cHHHHHHHH-hCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCC--CCeEE-
Q 019743          148 PLVVDIGSGN--GLFLLGMAR-KRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY--PGKLI-  221 (336)
Q Consensus       148 ~~vLDiGcGs--G~~~~~la~-~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnp--p~~~d-  221 (336)
                      ..|||||||+  +..+..+++ ..|+++|+++|.|+.|++.|++++......++.|+++|+.+. +.++.+|  ...+| 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~-~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP-ASILDAPELRDTLDL  158 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH-HHHHTCHHHHTTCCT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh-hhhhcccccccccCc
Confidence            5799999997  444555555 479999999999999999999887644335799999999763 2222211  01111 


Q ss_pred             ----EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcC
Q 019743          222 ----LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYG  281 (336)
Q Consensus       222 ----~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g  281 (336)
                          .++++..-.|....     .....+++.+.+.|+|||+|++.+-.    ....+.+.+.+...|
T Consensus       159 ~~p~av~~~avLH~l~d~-----~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g  221 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDE-----DDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARN  221 (277)
T ss_dssp             TSCCEEEEESCGGGSCGG-----GCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTT
T ss_pred             CCcchHHhhhhHhcCCch-----hhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcC
Confidence                23333222221110     01247999999999999999996422    123344555555444

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.07  E-value=2.6e-10  Score=100.60  Aligned_cols=123  Identities=15%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe-cchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~-~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||||.++..+++.. ..+|+|+|+|+.|++.|+++..     ++.... .++...-..-+..++.  +...+
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--d~~~~  109 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLADFEQGRP--SFTSI  109 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGGGCCSCCC--SEEEE
T ss_pred             CCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHhHcCcCCC--CEEEE
Confidence            5689999999999999999883 3599999999999999876532     222221 1221110011111111  11111


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------H---------------HHHHHHHHHHHHcCCcc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------E---------------EVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------~---------------~~~~~~~~~l~~~g~~~  284 (336)
                      ..  .+.         ....+++++.++|||||.+++....      .               ...+.+.+.+.+.||..
T Consensus       110 D~--v~~---------~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v  178 (232)
T 3opn_A          110 DV--SFI---------SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSV  178 (232)
T ss_dssp             CC--SSS---------CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             EE--Ehh---------hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEE
Confidence            11  110         0147899999999999999985310      0               11235667777888876


Q ss_pred             eeee
Q 019743          285 LVLV  288 (336)
Q Consensus       285 ~~~~  288 (336)
                      ....
T Consensus       179 ~~~~  182 (232)
T 3opn_A          179 KGLT  182 (232)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.07  E-value=7.6e-11  Score=113.90  Aligned_cols=130  Identities=17%  Similarity=0.115  Sum_probs=90.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------------CCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhH----
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATS----  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-------------p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~----  207 (336)
                      +.+|||.|||||.+++.+++..             +..+++|+|+++.+++.|+.|+..++..  ++.+.++|.+.    
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~  251 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS  251 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc
Confidence            4689999999999999988753             3568999999999999999999988875  68889999864    


Q ss_pred             -HHHhhhcCCCCeEEEEEeeCCCCCCCc-chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----HHHHHHHHHHH
Q 019743          208 -TFRSIVASYPGKLILVSIQCPNPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQFLE  279 (336)
Q Consensus       208 -~~d~ivsnpp~~~d~i~~~~~dp~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~l~~  279 (336)
                       .||.|++||||....   .......+. ...........|++.+.+.|+|||++.+.+....     ....+++.+.+
T Consensus       252 ~~fD~Iv~NPPf~~~~---~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~  327 (445)
T 2okc_A          252 TLVDVILANPPFGTRP---AGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ  327 (445)
T ss_dssp             SCEEEEEECCCSSCCC---TTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred             CCcCEEEECCCCCCcc---cccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHh
Confidence             378899999985321   000000000 0000011134889999999999999988664321     23456654443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.06  E-value=3.8e-11  Score=109.98  Aligned_cols=70  Identities=17%  Similarity=0.346  Sum_probs=55.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH----HHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST----FRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~----~d~ivsnpp~  218 (336)
                      +.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++..++..|++++++|+...    ||.+++|+||
T Consensus        43 ~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~Vv~n~py  116 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVCTANIPY  116 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSEEEEECCG
T ss_pred             cCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCEEEEcCCc
Confidence            568999999999999999987  579999999999999999999888888999999998652    4555555554

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.05  E-value=3.4e-10  Score=106.59  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=72.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+++++.+|+++.    +  |..  |.+++.
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~--p~~--D~v~~~  268 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFDG----V--PKG--DAIFIK  268 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CCC--SEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCCC----C--CCC--CEEEEe
Confidence            57899999999999999999999999999999 888887753      25799999998642    2  333  665554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..-.+.      ......++++++++.|+|||++++.
T Consensus       269 ~vlh~~------~~~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          269 WICHDW------SDEHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             SCGGGB------CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             chhhcC------CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            321110      0012247899999999999999883

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.05  E-value=1.1e-09  Score=107.86  Aligned_cols=137  Identities=16%  Similarity=0.181  Sum_probs=96.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhCC--CcEEEEecchhH---------HHHhh
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATS---------TFRSI  212 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~~--~nv~~~~~d~~~---------~~d~i  212 (336)
                      ..+|+|.|||||.+++.+++..   +..+++|+|+++.+++.|+.|+..+|.  .++.+.++|.+.         .||.|
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I  301 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV  301 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence            5689999999999999998874   367899999999999999999999988  478899998764         28999


Q ss_pred             hcCCCCeEEEEEe--eCCCCCCCcc--hhhhhcchHHHHHHHHhcCc-CCcEEEEEeCcHHH-----HHHHHHHHHHcCC
Q 019743          213 VASYPGKLILVSI--QCPNPDFNRP--EHRWRMVQRSLVEAVSDLLV-HDGKVFLQSDIEEV-----MLRMKQQFLEYGK  282 (336)
Q Consensus       213 vsnpp~~~d~i~~--~~~dp~~~~~--~~~~~l~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~-----~~~~~~~l~~~g~  282 (336)
                      ++||||....-.-  ...++.+...  .+......-.|++.+.+.|+ |||++.+.+.....     ...+++.+.+.+.
T Consensus       302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~  381 (542)
T 3lkd_A          302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGA  381 (542)
T ss_dssp             EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred             EecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCc
Confidence            9999996321000  0011100000  00001112369999999999 99999886644322     3467777777665


Q ss_pred             c
Q 019743          283 G  283 (336)
Q Consensus       283 ~  283 (336)
                      .
T Consensus       382 l  382 (542)
T 3lkd_A          382 I  382 (542)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.05  E-value=5.7e-10  Score=113.40  Aligned_cols=131  Identities=15%  Similarity=0.230  Sum_probs=89.9

Q ss_pred             cCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-------------------------
Q 019743          114 IGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-------------------------  168 (336)
Q Consensus       114 igpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-------------------------  168 (336)
                      ..|-.+.+.+.++..+.       |+      .+..+||.+||||.+++..|...                         
T Consensus       171 ~apl~e~LAa~ll~~~~-------~~------~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w  237 (703)
T 3v97_A          171 IAPIKETLAAAIVMRSG-------WQ------PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIW  237 (703)
T ss_dssp             CCSSCHHHHHHHHHHTT-------CC------TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHH
T ss_pred             CCCCcHHHHHHHHHhhC-------CC------CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHH
Confidence            45666666666665432       22      24679999999999999988651                         


Q ss_pred             -----------------CCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH--------HHHhhhcCCCCeEEE
Q 019743          169 -----------------KDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS--------TFRSIVASYPGKLIL  222 (336)
Q Consensus       169 -----------------p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~--------~~d~ivsnpp~~~d~  222 (336)
                                       +..+++|+|+++.|++.|++|+..+|+.+ ++|.++|+.+        .+|.+++||||....
T Consensus       238 ~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rl  317 (703)
T 3v97_A          238 QEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERL  317 (703)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC--
T ss_pred             HHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccc
Confidence                             23689999999999999999999999876 9999999865        256677777773210


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  269 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~  269 (336)
                           .+.      .....+|+. +.+..+.+.|||.+++-+.....
T Consensus       318 -----g~~------~~l~~ly~~-l~~~lk~~~~g~~~~ilt~~~~l  352 (703)
T 3v97_A          318 -----DSE------PALIALHSL-LGRIMKNQFGGWNLSLFSASPDL  352 (703)
T ss_dssp             ------CC------HHHHHHHHH-HHHHHHHHCTTCEEEEEESCHHH
T ss_pred             -----cch------hHHHHHHHH-HHHHHHhhCCCCeEEEEeCCHHH
Confidence                 000      011122333 33444455689999998877553

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.01  E-value=3.9e-10  Score=105.31  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.++.  +++++..+. .+++++.+|+++.    +  |  .+|.++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~----~--p--~~D~v~  252 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE----V--P--HADVHV  252 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC----C--C--CCSEEE
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC----C--C--CCcEEE
Confidence            356899999999999999999999999999999 44444  333322333 4699999998531    1  3  567666


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      +...-.+.      ......++++++++.|||||++++.
T Consensus       253 ~~~vlh~~------~d~~~~~~L~~~~~~LkpgG~l~i~  285 (348)
T 3lst_A          253 LKRILHNW------GDEDSVRILTNCRRVMPAHGRVLVI  285 (348)
T ss_dssp             EESCGGGS------CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EehhccCC------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            54321110      0111248999999999999999884

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.99  E-value=9.6e-10  Score=105.02  Aligned_cols=124  Identities=19%  Similarity=0.290  Sum_probs=84.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE--EEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY--FIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~--~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++    +.....  +...++.. +.  +  ++..+|.+
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~-l~--~--~~~~fD~I  175 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADD-VR--R--TEGPANVI  175 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHH-HH--H--HHCCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhh-cc--c--CCCCEEEE
Confidence            3579999999999999999987  56999999999999998765    333221  11222211 11  1  34567877


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-------------------HHHHHHHHHHHcCCcc
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-------------------VMLRMKQQFLEYGKGK  284 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------~~~~~~~~l~~~g~~~  284 (336)
                      +....-.+..        ....+++++.++|||||++++++....                   ..+.+.+++++.||..
T Consensus       176 ~~~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~  247 (416)
T 4e2x_A          176 YAANTLCHIP--------YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFEL  247 (416)
T ss_dssp             EEESCGGGCT--------THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEE
T ss_pred             EECChHHhcC--------CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEE
Confidence            6653222211        235899999999999999999754311                   1245777888888876


Q ss_pred             eeee
Q 019743          285 LVLV  288 (336)
Q Consensus       285 ~~~~  288 (336)
                      ..+.
T Consensus       248 ~~~~  251 (416)
T 4e2x_A          248 VDVQ  251 (416)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.99  E-value=3.3e-10  Score=101.29  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +.+|||||||+|.++..|++..  .+++|+|+|+.|++.+++++..  ..|++++++|+.+.
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQF   87 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTC
T ss_pred             cCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhC
Confidence            5689999999999999999874  7999999999999999998764  46899999999763

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.99  E-value=6.6e-10  Score=96.12  Aligned_cols=107  Identities=9%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..++     .+++|+|+|+.               ++.++++|+.+.     +.++..+|.++..
T Consensus        68 ~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------------~~~~~~~d~~~~-----~~~~~~fD~v~~~  122 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------------DPRVTVCDMAQV-----PLEDESVDVAVFC  122 (215)
T ss_dssp             TSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------------STTEEESCTTSC-----SCCTTCEEEEEEE
T ss_pred             CCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------------CceEEEeccccC-----CCCCCCEeEEEEe
Confidence            5689999999999988874     68999999987               456788887652     2245668887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH--HHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--EVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ..-.+         .....+++++.++|+|||.+++.....  ...+.+.+.+.+.||.....
T Consensus       123 ~~l~~---------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~  176 (215)
T 2zfu_A          123 LSLMG---------TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK  176 (215)
T ss_dssp             SCCCS---------SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred             hhccc---------cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            33211         123589999999999999999954322  13567888899999986543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.99  E-value=6.1e-10  Score=101.22  Aligned_cols=71  Identities=20%  Similarity=0.356  Sum_probs=59.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHH----HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST----FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~----~d~ivsnpp~~  219 (336)
                      +.+|||||||+|.++..+++.  ..+++|+|+|+.|++.|++++..++. .+++++++|+.+.    ||.+++|+||.
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~nlpy~  104 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQ  104 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGG
T ss_pred             CCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEecCcc
Confidence            568999999999999999998  46899999999999999999876655 5899999999752    45555555553

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.97  E-value=4.1e-10  Score=106.85  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CCCcEEEEecchhHH--------HHhhhcCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GITNGYFIATNATST--------FRSIVASY  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~~nv~~~~~d~~~~--------~d~ivsnp  216 (336)
                      +.+|||+|||+|..++.+|+.  ..+|+|+|+|+.|++.|++|++.+  +++|++++++|+.+.        ||.|+.||
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            578999999999999999987  579999999999999999999988  888899999998752        45555555


Q ss_pred             CC
Q 019743          217 PG  218 (336)
Q Consensus       217 p~  218 (336)
                      |+
T Consensus       172 Pr  173 (410)
T 3ll7_A          172 AR  173 (410)
T ss_dssp             EE
T ss_pred             CC
Confidence            55

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.97  E-value=9.4e-10  Score=103.48  Aligned_cols=100  Identities=19%  Similarity=0.101  Sum_probs=70.9

Q ss_pred             CCCeEEEEecc------ccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-HHhhhcCCC
Q 019743          146 AQPLVVDIGSG------NGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-FRSIVASYP  217 (336)
Q Consensus       146 ~~~~vLDiGcG------sG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-~d~ivsnpp  217 (336)
                      +..+|||||||      +|..++.++++ +|+++|+|+|+|+.|.         ....+++|+++|+.+. |..-+..++
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            35799999999      77777887766 5999999999999972         1346899999998763 211111113


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..+|.|+.... .+     .   .....++++++++|||||+++++
T Consensus       287 ~sFDlVisdgs-H~-----~---~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          287 GPFDIVIDDGS-HI-----N---AHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             CCEEEEEECSC-CC-----H---HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCc-cc-----c---hhHHHHHHHHHHhcCCCeEEEEE
Confidence            45787765321 11     0   12358899999999999999994

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.96  E-value=5e-10  Score=112.97  Aligned_cols=130  Identities=12%  Similarity=0.094  Sum_probs=88.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC---CCeEEEEecChHHHHHH--HHHHHH----hCCCcEEEEecchhH-------HHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK---DLNFLGLEVNGKLVTHC--RDSLQL----SGITNGYFIATNATS-------TFR  210 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p---~~~v~giDis~~~l~~a--~~n~~~----~~~~nv~~~~~d~~~-------~~d  210 (336)
                      +.+|||.|||||.+++.+++..+   ..+++|+|+++.+++.|  +.|+..    ++..+..+...|+..       .||
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD  401 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS  401 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence            56899999999999999998865   46899999999999999  666544    333334555666543       389


Q ss_pred             hhhcCCCCeEEEEEeeCCCCCCC---------------cchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH------
Q 019743          211 SIVASYPGKLILVSIQCPNPDFN---------------RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------  269 (336)
Q Consensus       211 ~ivsnpp~~~d~i~~~~~dp~~~---------------~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~------  269 (336)
                      .|++||||....     ..+...               .......-.+..|++.+.+.|+|||++.+.+.....      
T Consensus       402 VVIgNPPYg~~~-----~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~  476 (878)
T 3s1s_A          402 VVVMNPPYVSGV-----TDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNE  476 (878)
T ss_dssp             EEEECCBCCSSC-----CCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHH
T ss_pred             EEEECCCccccc-----cchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChH
Confidence            999999995210     000000               000000123678999999999999999996654332      


Q ss_pred             HHHHHHHHHHcC
Q 019743          270 MLRMKQQFLEYG  281 (336)
Q Consensus       270 ~~~~~~~l~~~g  281 (336)
                      ...+++.+.+..
T Consensus       477 ~kkLRk~LLe~~  488 (878)
T 3s1s_A          477 SKAFREFLVGNF  488 (878)
T ss_dssp             HHHHHHHHTTTT
T ss_pred             HHHHHHHHHhCC
Confidence            455666665543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.95  E-value=1.8e-09  Score=100.83  Aligned_cols=96  Identities=13%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++++..+|+.+.    +  |.  +|.+++.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~--p~--~D~v~~~  253 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFTS----I--PN--ADAVLLK  253 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTTC----C--CC--CSEEEEE
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccCC----C--CC--ccEEEee
Confidence            57999999999999999999999999999999 999988754      24699999998542    1  33  5666554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcC---CcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~l~~~  263 (336)
                      ..-.+.      ......++++++++.|+|   ||++++.
T Consensus       254 ~~lh~~------~d~~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          254 YILHNW------TDKDCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             SCGGGS------CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             hhhccC------CHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            321110      001123899999999999   9998884

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.94  E-value=9.9e-10  Score=99.81  Aligned_cols=122  Identities=9%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccc------cHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEE-EecchhHHHHhhhcCCC
Q 019743          146 AQPLVVDIGSGN------GLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYP  217 (336)
Q Consensus       146 ~~~~vLDiGcGs------G~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d~~~~~d~ivsnpp  217 (336)
                      ++.+|||+||||      |.  ..+++..| +.+|+|+|+|+.             +.++++ +++|+.+. +     .+
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~-~-----~~  121 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATV-H-----TA  121 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGC-C-----CS
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccC-C-----cc
Confidence            367999999955      66  44566665 689999999997             146888 99998652 0     12


Q ss_pred             CeEEEEEeeCCCCCCC---cchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          218 GKLILVSIQCPNPDFN---RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~---~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ..+|.++.++..++..   ..+.....+.+.+++++.++|||||+|++..-.......+.+.+.++||..+...
T Consensus       122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE
T ss_pred             CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE
Confidence            3466666543322110   0011112345789999999999999999955222223467778888888765543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.94  E-value=1.8e-09  Score=97.98  Aligned_cols=122  Identities=18%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHH-HHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATST-FRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~-~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||||||||.++..+++. +..+|+|+|+|+.|++.+.++     ..++..+ ..|+... .+. +  |...+|.+.
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~-----~~rv~~~~~~ni~~l~~~~-l--~~~~fD~v~  156 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ-----DDRVRSMEQYNFRYAEPVD-F--TEGLPSFAS  156 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT-----CTTEEEECSCCGGGCCGGG-C--TTCCCSEEE
T ss_pred             ccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CcccceecccCceecchhh-C--CCCCCCEEE
Confidence            568999999999999999887 456999999999999986442     1233332 3344321 111 1  222356554


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC--------------c-------HHHHHHHHHHHHHcCCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--------------I-------EEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~--------------~-------~~~~~~~~~~l~~~g~~  283 (336)
                      +...-.           ....++.++.++|+|||.+++...              .       ....+.+.+.+.+.||.
T Consensus       157 ~d~sf~-----------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~  225 (291)
T 3hp7_A          157 IDVSFI-----------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFS  225 (291)
T ss_dssp             ECCSSS-----------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEE
T ss_pred             EEeeHh-----------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCE
Confidence            432211           114788999999999999988411              0       01234567778888988


Q ss_pred             ceeee
Q 019743          284 KLVLV  288 (336)
Q Consensus       284 ~~~~~  288 (336)
                      .....
T Consensus       226 v~~~~  230 (291)
T 3hp7_A          226 VKGLD  230 (291)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.93  E-value=9.7e-10  Score=100.19  Aligned_cols=68  Identities=22%  Similarity=0.306  Sum_probs=58.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH------HHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST------FRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~------~d~ivsnpp~  218 (336)
                      +.+|||||||+|.++..|++.  ..+|+|+|+++.+++.+++++.  +..|++++++|+.+.      ||.+++|+||
T Consensus        51 ~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A           51 DDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNKLDFNKVVANLPY  124 (295)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGGSCCSEEEEECCG
T ss_pred             cCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcccCCccEEEEeCcc
Confidence            568999999999999999998  5799999999999999999987  346899999999752      5566666665

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.93  E-value=1.1e-09  Score=102.95  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=72.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+++|+.+|+++.    +  |..  |.+++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~--p~~--D~v~~  265 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFKE----V--PSG--DTILM  265 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CCC--SEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCCC----C--CCC--CEEEe
Confidence            357899999999999999999999999999999 888887653      25799999998642    2  333  66555


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+.      ......++++++++.|+|||++++.
T Consensus       266 ~~vlh~~------~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          266 KWILHDW------SDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             ESCGGGS------CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hHHhccC------CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4221110      0012348999999999999999883

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.92  E-value=8.8e-10  Score=108.81  Aligned_cols=130  Identities=15%  Similarity=0.086  Sum_probs=90.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC------------------CCeEEEEecChHHHHHHHHHHHHhCCCc-----EEEEec
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK------------------DLNFLGLEVNGKLVTHCRDSLQLSGITN-----GYFIAT  203 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p------------------~~~v~giDis~~~l~~a~~n~~~~~~~n-----v~~~~~  203 (336)
                      +.+|+|.|||||.+++.+++...                  ..+++|+|+++.+++.|+.|+..++..+     +.+.++
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            56899999999999999887521                  2479999999999999999998888775     788999


Q ss_pred             chhH-------HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----HHH
Q 019743          204 NATS-------TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VML  271 (336)
Q Consensus       204 d~~~-------~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~  271 (336)
                      |.+.       .||.|++||||......-...+...    + .......|++.+.+.|+|||++.+.+....     ...
T Consensus       250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~----~-~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~  324 (541)
T 2ar0_A          250 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH----P-TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT  324 (541)
T ss_dssp             CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSS----C-CSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHH
T ss_pred             CCcccccccccCCeEEEECCCcccccchhhHhhcCC----C-CCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHH
Confidence            9753       3788899999853210000000000    0 011234789999999999999998664322     234


Q ss_pred             HHHHHHHHcC
Q 019743          272 RMKQQFLEYG  281 (336)
Q Consensus       272 ~~~~~l~~~g  281 (336)
                      .+++.+.+.+
T Consensus       325 ~iR~~L~~~~  334 (541)
T 2ar0_A          325 DIRRDLMDKC  334 (541)
T ss_dssp             HHHHHHHHHE
T ss_pred             HHHHHHhhcC
Confidence            5666666554

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.91  E-value=4.5e-10  Score=101.61  Aligned_cols=105  Identities=16%  Similarity=0.105  Sum_probs=68.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH-hCCC-cEEEE--ecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGIT-NGYFI--ATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~-~~~~-nv~~~--~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||||||+|.++..++++   .+|+|+|+|+ |+..++++... .... |+.++  ++|+...       |+..+|.
T Consensus        83 g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD~  151 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-------EPFQADT  151 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-------CCCCCSE
T ss_pred             CCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-------CCCCcCE
Confidence            568999999999999999987   6899999999 64433221100 0011 78999  8998652       4556787


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc--EEEEEe
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG--KVFLQS  264 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG--~l~~~~  264 (336)
                      ++..+. ......... ..-...+++.+.++|+|||  .+++..
T Consensus       152 Vvsd~~-~~~~~~~~d-~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVE-ASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEECCC-CCCSCHHHH-HHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEECCC-cCCCchhhh-HHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            776544 111000000 0001137899999999999  988854

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.90  E-value=6.4e-10  Score=99.61  Aligned_cols=75  Identities=17%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecCh-------HHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCC-
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG-------KLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYP-  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~-------~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp-  217 (336)
                      +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+       .+++.|++|++.+++.| ++++++|+.+.+...   ++ 
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~---~~~  158 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL---VKT  158 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH---HHH
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh---hcc
Confidence            568999999999999999987  57899999999       99999999998887755 999999997753321   11 


Q ss_pred             -CeEEEEEee
Q 019743          218 -GKLILVSIQ  226 (336)
Q Consensus       218 -~~~d~i~~~  226 (336)
                       ..+|.++++
T Consensus       159 ~~~fD~V~~d  168 (258)
T 2r6z_A          159 QGKPDIVYLD  168 (258)
T ss_dssp             HCCCSEEEEC
T ss_pred             CCCccEEEEC
Confidence             345666654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.90  E-value=4.3e-10  Score=101.14  Aligned_cols=105  Identities=10%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH-hCC-CcEEEE--ecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGI-TNGYFI--ATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~-~~~-~nv~~~--~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+|||||||+|.++..+++.   .+|+|+|+++ |+..++++... ... .|+.++  ++|+...       |+..+|.
T Consensus        75 g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD~  143 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-------PVERTDV  143 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-------CCCCCSE
T ss_pred             CCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-------CCCCCcE
Confidence            568999999999999999887   6899999999 54333211000 001 168899  8898652       4556777


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc--EEEEEe
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG--KVFLQS  264 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG--~l~~~~  264 (336)
                      ++..+. ......... ..-...+++.+.++|+|||  .+++..
T Consensus       144 V~sd~~-~~~~~~~~d-~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVE-SERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             EEECCC-CCCSCHHHH-HHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEeCc-ccCCccchh-HHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            766544 111000000 0001137899999999999  999865

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.90  E-value=1.7e-09  Score=97.95  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +.+|||||||+|.++..|++..+.  .+++|+|+|+.|++.++++.    ..+++++++|+.+.
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTF  102 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGC
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcC
Confidence            568999999999999999988543  55999999999999999983    35899999999763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.90  E-value=2.9e-09  Score=105.89  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..||+.  +++|+|||.|+.+++.|+.++.+.+..++.+.++++.+..+   ..++..||.|...
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIA---ALEEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHH---HCCTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhh---hccCCCccEEEEC
Confidence            468999999999999999998  78999999999999999999988876789999999977532   2245667876543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.90  E-value=4.4e-12  Score=112.82  Aligned_cols=57  Identities=19%  Similarity=0.277  Sum_probs=50.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +.+|||||||+|.++..+++..  .+++|+|+|+.+++.|++++.  ...+++++++|+.+
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~   86 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQ   86 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTT
T ss_pred             CCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhh
Confidence            5689999999999999999984  899999999999999988775  34689999999865

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.89  E-value=2e-09  Score=101.42  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+++++.+|+.+.    +  |.  +|.+++.
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~--~~--~D~v~~~  274 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFAS----V--PQ--GDAMILK  274 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CC--EEEEEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCcccC----C--CC--CCEEEEe
Confidence            57999999999999999999999999999999 999987754      35799999998641    2  33  6776655


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..-.+.      ......++++++++.|+|||++++.
T Consensus       275 ~~lh~~------~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          275 AVCHNW------SDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             SSGGGS------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccC------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            322110      0111238999999999999999984

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.89  E-value=6.3e-09  Score=95.09  Aligned_cols=60  Identities=10%  Similarity=0.220  Sum_probs=55.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +.+|||+|||+|.++..+++..|+.+++|+|+|+.|++.|++|++.++ .+++++++|+.+
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~   86 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYRE   86 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGG
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHH
Confidence            578999999999999999999888999999999999999999998877 789999999865

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.88  E-value=9.3e-10  Score=99.13  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=56.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-------HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-------FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-------~d~ivsnpp~~  219 (336)
                      + +|||||||+|.++..|++..  .+|+|+|+|+.|++.+++++.  + .|++++++|+.+.       ++.+++|+||.
T Consensus        48 ~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           48 G-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             S-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             C-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhhCChhhccCccEEEecCccc
Confidence            5 89999999999999999984  789999999999999999875  2 5899999999753       34466666663

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.86  E-value=5.6e-09  Score=102.98  Aligned_cols=136  Identities=13%  Similarity=0.030  Sum_probs=90.6

Q ss_pred             CeEEEEeccccHHHHHHHHhCC---------------CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH----
Q 019743          148 PLVVDIGSGNGLFLLGMARKRK---------------DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS----  207 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p---------------~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~----  207 (336)
                      .+|+|.|||||.+++.+++..+               ..+++|+|+++.+++.|+.|+..+++. ++.+.++|.+.    
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4899999999999998865432               468999999999999999999988875 34447788653    


Q ss_pred             ---HHHhhhcCCCCeEEEEEe--eCCCCCCCcc--------hhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH------
Q 019743          208 ---TFRSIVASYPGKLILVSI--QCPNPDFNRP--------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE------  268 (336)
Q Consensus       208 ---~~d~ivsnpp~~~d~i~~--~~~dp~~~~~--------~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~------  268 (336)
                         .||.|++||||......-  ...++.+...        .+......-.|++.+.+.|+|||++.+.+....      
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~  405 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTN  405 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGG
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcc
Confidence               389999999996421000  0000000000        000001122689999999999999888653322      


Q ss_pred             HHHHHHHHHHHcCCc
Q 019743          269 VMLRMKQQFLEYGKG  283 (336)
Q Consensus       269 ~~~~~~~~l~~~g~~  283 (336)
                      ....+++.+.+.+..
T Consensus       406 ~~~~iRk~Lle~~~l  420 (544)
T 3khk_A          406 NEGEIRKTLVEQDLV  420 (544)
T ss_dssp             GHHHHHHHHHHTTCE
T ss_pred             hHHHHHHHHHhCCcH
Confidence            234677777776654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.86  E-value=1.5e-08  Score=88.75  Aligned_cols=99  Identities=14%  Similarity=-0.063  Sum_probs=71.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.+++.++   |..+++|+|||+.|++.+++++..++ .+..+..+|....      -||..+|.+.+.
T Consensus       106 p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~------~~~~~~DvvLll  175 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCA------PPAEAGDLALIF  175 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTS------CCCCBCSEEEEE
T ss_pred             CCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccC------CCCCCcchHHHH
Confidence            5699999999999999887   78999999999999999999998877 5788999987542      145567766554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -.      .|+-...-....+ .+.+.|+++|.++-
T Consensus       176 k~------lh~LE~q~~~~~~-~ll~aL~~~~vvVs  204 (253)
T 3frh_A          176 KL------LPLLEREQAGSAM-ALLQSLNTPRMAVS  204 (253)
T ss_dssp             SC------HHHHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred             HH------HHHhhhhchhhHH-HHHHHhcCCCEEEE
Confidence            21      1111000111233 55668999986553

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.84  E-value=7.3e-09  Score=96.97  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+++++.+|+++.    +  |.  +|.+++.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~--~~--~D~v~~~  258 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFKS----I--PS--ADAVLLK  258 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTTC----C--CC--CSEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCCC----C--CC--ceEEEEc
Confidence            46899999999999999999999999999999 788877653      35699999998641    2  33  5666554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcC---CcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~l~~~  263 (336)
                      ..-.+.      ......++++++.+.|+|   ||++++.
T Consensus       259 ~vlh~~------~d~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          259 WVLHDW------NDEQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             SCGGGS------CHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             ccccCC------CHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            321111      001124899999999999   9998883

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.83  E-value=7.9e-09  Score=92.34  Aligned_cols=130  Identities=15%  Similarity=0.088  Sum_probs=88.1

Q ss_pred             CCeEEEEeccccHHHHHHHHh-------CCC-----CeEEEEecCh---HHHH-----------HHHHHHHH--------
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLEVNG---KLVT-----------HCRDSLQL--------  192 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-------~p~-----~~v~giDis~---~~l~-----------~a~~n~~~--------  192 (336)
                      ..+|||||||+|..++.+++.       .|+     .+++++|..+   +.+.           .|+++.+.        
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            568999999999998887654       564     5899999877   5554           45555543        


Q ss_pred             ------hCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          193 ------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       193 ------~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                            .+..+++++.+|+.+.+...-.+....+|.+++   |++....++  ++.+..+++.+.+.|+|||.+..-+..
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl---D~fsp~~~p--~lw~~~~l~~l~~~L~pGG~l~tysaa  215 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL---DGFAPAKNP--DMWTQNLFNAMARLARPGGTLATFTSA  215 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE---CSSCTTTCG--GGCCHHHHHHHHHHEEEEEEEEESCCB
T ss_pred             hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE---CCCCcccCh--hhcCHHHHHHHHHHcCCCcEEEEEeCC
Confidence                  122468899999987644321000014676655   454333333  356789999999999999998864432


Q ss_pred             HHHHHHHHHHHHHcCCcce
Q 019743          267 EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       267 ~~~~~~~~~~l~~~g~~~~  285 (336)
                          ..+++.|.+.||...
T Consensus       216 ----~~vrr~L~~aGF~v~  230 (257)
T 2qy6_A          216 ----GFVRRGLQEAGFTMQ  230 (257)
T ss_dssp             ----HHHHHHHHHHTEEEE
T ss_pred             ----HHHHHHHHHCCCEEE
Confidence                357778888899854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.83  E-value=2.6e-09  Score=94.87  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +.+|||||||+|.++..+++..  .+++|+|+|+.+++.|+++...  ..+++++++|+.+
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~   87 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQ   87 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGG
T ss_pred             CCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHh
Confidence            5689999999999999999985  7899999999999999998753  3689999999876

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.82  E-value=2.3e-09  Score=98.27  Aligned_cols=103  Identities=12%  Similarity=0.050  Sum_probs=66.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEec----ChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEV----NGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDi----s~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+|||||||+|.++..+|++   .+|+|+|+    ++.+++.+.  .+..+.+++.++++ |+...       |+..+|
T Consensus        83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l-------~~~~fD  150 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFI-------PPERCD  150 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTS-------CCCCCS
T ss_pred             CCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccC-------CcCCCC
Confidence            568999999999999999987   57999999    565442211  11122357999998 87542       344567


Q ss_pred             EEEeeCCCCCCCcchhh-hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          222 LVSIQCPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .|+..+....   .++. ...-.-.++..+.++|||||.|++.+
T Consensus       151 ~V~sd~~~~~---g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          151 TLLCDIGESS---PNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             EEEECCCCCC---SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEECCcccc---CcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            7766533210   1110 00000147888999999999999855

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.81  E-value=2.6e-09  Score=95.15  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +.+|||||||+|.++..+++. +..+++|+|+|+.+++.++++    ...|++++++|+.+.
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKF   88 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTC
T ss_pred             cCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhC
Confidence            568999999999999999987 458999999999999999877    346899999999763

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.77  E-value=3.3e-09  Score=94.58  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----H------HhhhcC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----F------RSIVAS  215 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~------d~ivsn  215 (336)
                      +.+|||||||+|.++. +++ .+..+++|+|+|+.|++.++++....  .|++++++|+.+.     +      +.+++|
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN   97 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVFGN   97 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred             cCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence            5689999999999999 654 43344999999999999998876532  5899999999762     2      245677


Q ss_pred             CCCe
Q 019743          216 YPGK  219 (336)
Q Consensus       216 pp~~  219 (336)
                      +||.
T Consensus        98 lPY~  101 (252)
T 1qyr_A           98 LPYN  101 (252)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            7663

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.72  E-value=1.2e-07  Score=81.33  Aligned_cols=117  Identities=11%  Similarity=0.081  Sum_probs=84.0

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      +.+.|++.+.+...+..                  ..+|||+|||  ..++.+|+. ++.+++.+|.+++..+.|+++++
T Consensus        14 ~~v~~~~~~~L~~~l~~------------------a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~   72 (202)
T 3cvo_A           14 LTMPPAEAEALRMAYEE------------------AEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLA   72 (202)
T ss_dssp             CCSCHHHHHHHHHHHHH------------------CSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhhC------------------CCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH
Confidence            56778888887765542                  4589999984  688888874 48999999999999999999999


Q ss_pred             HhCC---CcEEEEecchhHH--------------HHh----hhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHH
Q 019743          192 LSGI---TNGYFIATNATST--------------FRS----IVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA  249 (336)
Q Consensus       192 ~~~~---~nv~~~~~d~~~~--------------~d~----ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~  249 (336)
                      ++++   ++++++.+|+.+.              ++.    +...+ ...+|.+++.-.             .....+..
T Consensus        73 ~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-------------k~~~~~~~  139 (202)
T 3cvo_A           73 ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-------------FRVGCALA  139 (202)
T ss_dssp             HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS-------------SHHHHHHH
T ss_pred             HcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC-------------CchhHHHH
Confidence            9885   5799999996431              121    11111 234677776521             11255566


Q ss_pred             HHhcCcCCcEEEE
Q 019743          250 VSDLLVHDGKVFL  262 (336)
Q Consensus       250 ~~~~LkpgG~l~~  262 (336)
                      +.+.|+|||.+++
T Consensus       140 ~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          140 TAFSITRPVTLLF  152 (202)
T ss_dssp             HHHHCSSCEEEEE
T ss_pred             HHHhcCCCeEEEE
Confidence            7789999999976

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.68  E-value=2e-08  Score=83.93  Aligned_cols=108  Identities=13%  Similarity=0.099  Sum_probs=76.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.+|||||||+                +++|+|+.|++.|+++..    .++++.++|+.+. +. ...++.++|.++.
T Consensus        12 ~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~-~~-~~~~~~~fD~V~~   69 (176)
T 2ld4_A           12 AGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG----NEGRVSVENIKQL-LQ-SAHKESSFDIILS   69 (176)
T ss_dssp             TTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT----TTSEEEEEEGGGG-GG-GCCCSSCEEEEEE
T ss_pred             CCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc----cCcEEEEechhcC-cc-ccCCCCCEeEEEE
Confidence            367999999996                249999999999988753    2488999998753 11 0114667898876


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH---------HHHHHHHHHHHcCC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------VMLRMKQQFLEYGK  282 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~~l~~~g~  282 (336)
                      .+.-.+.. .      ...+++++++++|||||++++......         ..+.+.+.+.+.||
T Consensus        70 ~~~l~~~~-~------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           70 GLVPGSTT-L------HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CCSTTCCC-C------CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CChhhhcc-c------CHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            54333210 0      125899999999999999999543111         14567888999999

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.59  E-value=2.8e-07  Score=83.43  Aligned_cols=112  Identities=17%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--C---CCcEEEEecchhHHHHhhhcCCCCeE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--G---ITNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~---~~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      +..+||=||-|.|..+..+++..+..+++.+||++..++.|++.....  +   -.+++++.+|+...+    ...+..+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l----~~~~~~y  158 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV----NQTSQTF  158 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT----SCSSCCE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH----hhccccC
Confidence            457899999999999999998877889999999999999999886432  1   257999999998753    3356678


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      |.|.+..+||..    ....++.+.|++.+.+.|+|||.+...+.
T Consensus       159 DvIi~D~~dp~~----~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          159 DVIISDCTDPIG----PGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEEEESCCCCCC----TTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CEEEEeCCCcCC----CchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            998888888752    22347778999999999999999998653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.49  E-value=7.7e-08  Score=85.87  Aligned_cols=73  Identities=21%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-------C-C-CcEEEEecchhHHHHhhhcCCCC
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------G-I-TNGYFIATNATSTFRSIVASYPG  218 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-------~-~-~nv~~~~~d~~~~~d~ivsnpp~  218 (336)
                      .+|||+|||+|..++.+|++  .++|+++|+++.+.+.++++++..       + + .+++++++|+.+.+..    .+.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~----~~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----ITP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CSS
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh----Ccc
Confidence            78999999999999999998  568999999999877777765432       2 3 4799999999775322    122


Q ss_pred             eEEEEEee
Q 019743          219 KLILVSIQ  226 (336)
Q Consensus       219 ~~d~i~~~  226 (336)
                      .+|.+++.
T Consensus       164 ~fDvV~lD  171 (258)
T 2oyr_A          164 RPQVVYLD  171 (258)
T ss_dssp             CCSEEEEC
T ss_pred             cCCEEEEc
Confidence            46766654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.49  E-value=1.1e-06  Score=81.88  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=85.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC------CcEEEEecchhHHHHhhhcCCCCeE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI------TNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~------~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      +.+|||+|+|.|.=+..+|...+...++++|+|+..++..++|+++.+.      .++.+...|+... +..   .+..+
T Consensus       149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~-~~~---~~~~f  224 (359)
T 4fzv_A          149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW-GEL---EGDTY  224 (359)
T ss_dssp             TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH-HHH---STTCE
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc-chh---ccccC
Confidence            6799999999999999999988778899999999999999999998765      3688999998653 211   24567


Q ss_pred             EEEEeeCCC-----------CCCCcchh-hh----hcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          221 ILVSIQCPN-----------PDFNRPEH-RW----RMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       221 d~i~~~~~d-----------p~~~~~~~-~~----~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      |.|.+.-|-           |....... ..    ...+.+++..+.+.|||||+++-.|
T Consensus       225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            777665431           11111111 11    1235789999999999999998866

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.46  E-value=8.7e-07  Score=87.15  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=87.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------------CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH------
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS------  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-------------p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~------  207 (336)
                      +.+|+|-+||||.+.+...+..             ....++|+|+++.+...|+-|...++..+..+.++|.+.      
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~  297 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREM  297 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGC
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhh
Confidence            4689999999999998876532             135799999999999999999999998766777777642      


Q ss_pred             ----HHHhhhcCCCCeEEEE---EeeCCCCCCCcchhhhhcchHHHHHHHHhcCc-------CCcEEEEEeCcHH-----
Q 019743          208 ----TFRSIVASYPGKLILV---SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV-------HDGKVFLQSDIEE-----  268 (336)
Q Consensus       208 ----~~d~ivsnpp~~~d~i---~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lk-------pgG~l~~~~~~~~-----  268 (336)
                          .||.|++||||.....   .-.++..      ....-..-.|++.+.+.||       |||++.+......     
T Consensus       298 ~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~------~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~  371 (530)
T 3ufb_A          298 GDKDRVDVILTNPPFGGEEEKGILGNFPED------MQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDG  371 (530)
T ss_dssp             CGGGCBSEEEECCCSSCBCCHHHHTTSCGG------GCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCT
T ss_pred             cccccceEEEecCCCCccccccccccCchh------cccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccc
Confidence                3899999999963210   0001100      0001112356777777776       7999998654321     


Q ss_pred             HHHHHHHHHHHcCC
Q 019743          269 VMLRMKQQFLEYGK  282 (336)
Q Consensus       269 ~~~~~~~~l~~~g~  282 (336)
                      ....+++.+.+...
T Consensus       372 ~~~~iRk~Lle~~~  385 (530)
T 3ufb_A          372 ISARIKEELLKNFN  385 (530)
T ss_dssp             HHHHHHHHHHHHSE
T ss_pred             hHHHHHHHHhhcCE
Confidence            23356777766554

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.46  E-value=1.2e-06  Score=79.00  Aligned_cols=125  Identities=9%  Similarity=-0.007  Sum_probs=90.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-----CCCeEEEEecCh--------------------------HHHHHHHHHHHHhCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNG--------------------------KLVTHCRDSLQLSGI  195 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-----p~~~v~giDis~--------------------------~~l~~a~~n~~~~~~  195 (336)
                      ...|||+||..|..++.+|...     ++.+++++|..+                          ..++.+++|+++.|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            5689999999999999988653     578999999642                          147789999999987


Q ss_pred             --CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE-eC-cHHHHH
Q 019743          196 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SD-IEEVML  271 (336)
Q Consensus       196 --~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~-~~-~~~~~~  271 (336)
                        ++++++.+|+.+.++.   +++..+|.+++.. |-    .     .-+...++.+...|+|||.+++- .. +.....
T Consensus       187 ~~~~I~li~Gda~etL~~---~~~~~~d~vfIDa-D~----y-----~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~  253 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPT---APIDTLAVLRMDG-DL----Y-----ESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKD  253 (282)
T ss_dssp             CSTTEEEEESCHHHHSTT---CCCCCEEEEEECC-CS----H-----HHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHH
T ss_pred             CcCceEEEEeCHHHHHhh---CCCCCEEEEEEcC-Cc----c-----ccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHH
Confidence              6899999999876443   2455678777653 11    0     12357889999999999998882 11 133445


Q ss_pred             HHHHHHHHcCCcc
Q 019743          272 RMKQQFLEYGKGK  284 (336)
Q Consensus       272 ~~~~~l~~~g~~~  284 (336)
                      .+.+.+...+...
T Consensus       254 Av~Ef~~~~~i~~  266 (282)
T 2wk1_A          254 AVDEYRAKFDIAD  266 (282)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHhcCCce
Confidence            6666677777553

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.37  E-value=1.5e-06  Score=86.57  Aligned_cols=102  Identities=13%  Similarity=0.221  Sum_probs=69.8

Q ss_pred             CCeEEEEeccccHHH---HHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFL---LGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~---~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      ..+|||+|||+|.+.   +..+++. ...+|+|||.|+ +...|++..+.+++. .|+++++|+.+. +     .|..+|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev-~-----LPEKVD  430 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW-V-----APEKAD  430 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC-C-----CSSCEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec-c-----CCcccC
Confidence            357999999999884   4444332 234799999997 566788888888886 499999999874 1     466677


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                      .++...-...   ...+   .....+....++|||||.++
T Consensus       431 IIVSEwMG~f---Ll~E---~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          431 IIVSELLGSF---ADNE---LSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEECCCCBTT---BGGG---CHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEEcCccc---cccc---CCHHHHHHHHHhcCCCcEEc
Confidence            6654322111   0111   12367778889999999753

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.28  E-value=7.1e-06  Score=76.57  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=85.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh---CC-----CcEEEEecchhHHHHhhhcCCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---GI-----TNGYFIATNATSTFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~---~~-----~nv~~~~~d~~~~~d~ivsnpp~  218 (336)
                      ..+||=||-|.|..+..+.+. |..+++.+||++..++.|++.....   ..     ++++++..|+...+..... ...
T Consensus       206 pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~-~~~  283 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK-EGR  283 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH-HTC
T ss_pred             CCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh-ccC
Confidence            568999999999999998875 4579999999999999999874221   11     3489999999876543321 123


Q ss_pred             eEEEEEeeCCCCCCCc--chhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          219 KLILVSIQCPNPDFNR--PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~--~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+|.|.+..+|+....  ......++.++|++.+.+.|+|||.++...+.
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            4788877765543211  12234577899999999999999999986543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.25  E-value=1.9e-06  Score=85.96  Aligned_cols=107  Identities=10%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             CCeEEEEeccccHHHHHH---HH-hC---------CCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhh
Q 019743          147 QPLVVDIGSGNGLFLLGM---AR-KR---------KDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSI  212 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~l---a~-~~---------p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~i  212 (336)
                      ...|||+|||+|.++...   ++ ..         ...+|+|||.|+.++...++... +++.+ |+++++|+.+. ...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev-~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSL-PGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGH-HHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhc-ccc
Confidence            357999999999996432   22 11         24599999999988876665554 77765 99999999875 211


Q ss_pred             -hcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          213 -VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       213 -vsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                       -...|..+|.++.......      -.....+..+..+.++|||||.++
T Consensus       488 ~~~~~~ekVDIIVSElmGsf------l~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELLGSF------GDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHTTCCCCSEEEECCCBTT------BGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccCCCCcccEEEEeccccc------cchhccHHHHHHHHHhCCCCcEEE
Confidence             0112556676654322111      011234578888889999999654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.08  E-value=8.5e-06  Score=76.36  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             CCeEEEEeccccHHHHHHHH--------h-------CCCCeEEEEecChHHHHHHHHHHHHhC-----------C-CcEE
Q 019743          147 QPLVVDIGSGNGLFLLGMAR--------K-------RKDLNFLGLEVNGKLVTHCRDSLQLSG-----------I-TNGY  199 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~--------~-------~p~~~v~giDis~~~l~~a~~n~~~~~-----------~-~nv~  199 (336)
                      ..+|+|+|||+|..++.++.        +       .|+.+|+.-|+-.......-+.+....           . .+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            56899999999999888732        2       167778887876665544433332110           0 0112


Q ss_pred             EEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhh------------------------------hhcchHHHHHH
Q 019743          200 FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR------------------------------WRMVQRSLVEA  249 (336)
Q Consensus       200 ~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~------------------------------~~l~~~~~l~~  249 (336)
                      |..+....++..++  |+.++|.++.++.-.|.......                              .+.....|++.
T Consensus       133 f~~gvpgSFy~rlf--P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          133 FVAGVPGSFYRRLF--PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             EEEEEESCTTSCCS--CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccC--CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344445  77889988877776665422110                              01134568999


Q ss_pred             HHhcCcCCcEEEEEe
Q 019743          250 VSDLLVHDGKVFLQS  264 (336)
Q Consensus       250 ~~~~LkpgG~l~~~~  264 (336)
                      .++.|+|||++++.+
T Consensus       211 ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          211 RAAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHHhCCCCEEEEEE
Confidence            999999999999965

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.06  E-value=2.5e-05  Score=73.32  Aligned_cols=167  Identities=12%  Similarity=0.078  Sum_probs=100.2

Q ss_pred             CCeEEEEeccccHHHHHHHHh-----------------CCCCeEEEEecC-----------hHHHHHHHHHHHHhCC-Cc
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-----------------RKDLNFLGLEVN-----------GKLVTHCRDSLQLSGI-TN  197 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-----------------~p~~~v~giDis-----------~~~l~~a~~n~~~~~~-~n  197 (336)
                      ..+|+|+||++|..++.+...                 .|+.+|+.-|+-           +.+.+.+++   ..+. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999999887765                 477889999987           444433321   2221 23


Q ss_pred             EEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhh-------------------------------hhcchHHH
Q 019743          198 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR-------------------------------WRMVQRSL  246 (336)
Q Consensus       198 v~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~-------------------------------~~l~~~~~  246 (336)
                      -.|+.+....++..++  |+.+++.++.++.-.|.......                               .+.....|
T Consensus       130 ~~f~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF--PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             SEEEEECCSCTTSCCS--CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccC--CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            4677776656666677  78889988877666664322100                               01123567


Q ss_pred             HHHHHhcCcCCcEEEEEeCc---H--H-----HHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCCCCCCC--HHH
Q 019743          247 VEAVSDLLVHDGKVFLQSDI---E--E-----VMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRS--DWE  314 (336)
Q Consensus       247 l~~~~~~LkpgG~l~~~~~~---~--~-----~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~t--~~e  314 (336)
                      ++..++.|+|||++++.+..   .  .     ....+.+.|...|....+. .|.+           ..|.+.++  ++.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek-~dsf-----------~~P~y~ps~~E~~  275 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEK-LDSF-----------NVPIYAPSTEEVK  275 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHH-HHTC-----------CCSBCCCCHHHHH
T ss_pred             HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhh-hccc-----------CCcccCCCHHHHH
Confidence            88889999999999996632   1  1     3344444444556532211 1211           22444455  455


Q ss_pred             HHHHHcC-CCeEEEEEE
Q 019743          315 QHVIDRG-APMYRLMLS  330 (336)
Q Consensus       315 ~~~~~~G-~~i~~~~~~  330 (336)
                      ..+.+.| +.|.++...
T Consensus       276 ~~le~~g~F~i~~le~~  292 (384)
T 2efj_A          276 RIVEEEGSFEILYLETF  292 (384)
T ss_dssp             HHHHHHCSEEEEEEEEE
T ss_pred             HHHHHcCCceEEEEEEE
Confidence            5566664 577776543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.01  E-value=7.6e-06  Score=65.77  Aligned_cols=83  Identities=13%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             CCeEEEEecccc-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNG-LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG-~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..++||||||+| ..+..||+.. +..|+++|+++.+++               +++.|+++..-.+.    ..+|.|+.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------------~v~dDiF~P~~~~Y----~~~DLIYs   95 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------------IVRDDITSPRMEIY----RGAALIYS   95 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------------EECCCSSSCCHHHH----TTEEEEEE
T ss_pred             CCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------------eEEccCCCCccccc----CCcCEEEE
Confidence            469999999999 7999999743 788999999998776               78888765211110    14677766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..|-|.          .++.+++.+.++   |.-+++
T Consensus        96 irPP~E----------l~~~i~~lA~~v---~adliI  119 (153)
T 2k4m_A           96 IRPPAE----------IHSSLMRVADAV---GARLII  119 (153)
T ss_dssp             ESCCTT----------THHHHHHHHHHH---TCEEEE
T ss_pred             cCCCHH----------HHHHHHHHHHHc---CCCEEE
Confidence            555554          344555444433   455665

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.99  E-value=2e-05  Score=71.62  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=42.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      .+..|||++||||.+++++++.  +.+++|+|+++.+++.|++|++...
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            3678999999999999998887  5799999999999999999987653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.94  E-value=2.9e-05  Score=69.49  Aligned_cols=56  Identities=18%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +..++|.+||.|..+..++++  +.+++|+|.++.+++.|++ +..   .++.++++|..+.
T Consensus        23 gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l   78 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHL   78 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGH
T ss_pred             CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchH
Confidence            578999999999999999998  7899999999999999988 542   5899999998764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.89  E-value=2.6e-05  Score=72.55  Aligned_cols=116  Identities=12%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             CCeEEEEeccccHHHHHHHHh----------------CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTF  209 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~----------------~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~  209 (336)
                      ..+|+|+||++|..++.+...                .|+..|+..|+-.+....+-+++..... .+..|+.+....++
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            467999999999877665443                5788999999998888887766542110 13456666555555


Q ss_pred             HhhhcCCCCeEEEEEeeCCCCCCCcchh-------------------------hhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          210 RSIVASYPGKLILVSIQCPNPDFNRPEH-------------------------RWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       210 d~ivsnpp~~~d~i~~~~~dp~~~~~~~-------------------------~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..++  |+.+++.++.++.-.|......                         ..+.....|++..++.|+|||++++.+
T Consensus       132 ~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          132 GRLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hccC--CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            6666  6778887776665555332110                         011224678999999999999999965

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.66  E-value=2.5e-05  Score=69.44  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||.|.++..++++.+...+.|+|++.++....... ...+. ++..++.++..     ..-++..+|.+...
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv-----~~l~~~~~DlVlsD  147 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDI-----HRLEPVKCDTLLCD  147 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCT-----TTSCCCCCSEEEEC
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEecccee-----hhcCCCCccEEEec
Confidence            4589999999999999888876667888999885431111000 00011 44555665421     11134456665544


Q ss_pred             C-CCCCCCcchhh-hhcchHHHHHHHHhcCcCC-cEEEEEeC
Q 019743          227 C-PNPDFNRPEHR-WRMVQRSLVEAVSDLLVHD-GKVFLQSD  265 (336)
Q Consensus       227 ~-~dp~~~~~~~~-~~l~~~~~l~~~~~~Lkpg-G~l~~~~~  265 (336)
                      + |+    ..++. +..-.-.+++.+.++|+|| |.|++..-
T Consensus       148 ~apn----sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf  185 (277)
T 3evf_A          148 IGES----SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL  185 (277)
T ss_dssp             CCCC----CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             CccC----cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            3 22    11111 1111124588999999999 99999653

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.47  E-value=0.00016  Score=67.05  Aligned_cols=59  Identities=14%  Similarity=0.029  Sum_probs=49.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +..|||||.|.|.++..|+......+++++|+++..+...++..   ...|++++++|++..
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccch
Confidence            46899999999999999998643467999999999999888765   236899999999653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.44  E-value=0.00024  Score=63.19  Aligned_cols=47  Identities=23%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      ++..|||..||||..+++.++.  +.+++|+|+++.+++.|++|++.++
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            3679999999999999998877  6799999999999999999987554

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.41  E-value=5.9e-05  Score=67.20  Aligned_cols=109  Identities=9%  Similarity=-0.039  Sum_probs=63.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||.|.++...+++.+...++|+|++.++...+... ...+ .++..+..+.. .    ..-++..+|.+...
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~d-v----~~l~~~~~DvVLSD  163 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTD-V----FNMEVIPGDTLLCD  163 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCC-G----GGSCCCCCSEEEEC
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC-CceEEeeCCcc-h----hhcCCCCcCEEEec
Confidence            5689999999999999988877777899999986642222110 0011 13333343321 1    11245556665544


Q ss_pred             C-CCCCCCcchhhhhcchHHHHHHHHhcCcCC--cEEEEEeC
Q 019743          227 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQSD  265 (336)
Q Consensus       227 ~-~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg--G~l~~~~~  265 (336)
                      + |+ . -... .+..-.-.+++.+.++|+||  |.|++..-
T Consensus       164 mApn-s-G~~~-~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF  202 (282)
T 3gcz_A          164 IGES-S-PSIA-VEEQRTLRVLNCAKQWLQEGNYTEFCIKVL  202 (282)
T ss_dssp             CCCC-C-SCHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CccC-C-CChH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence            3 22 1 1111 11111124588889999999  99999663

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.35  E-value=0.0012  Score=59.11  Aligned_cols=123  Identities=13%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ...+||+=+|||.+++.+.+.  ..+++.+|.++.+++..++|++.  ..++++++.|....+..... |+..++.|++ 
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~-~~~~fdLVfi-  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLP-PPEKRGLIFI-  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCS-CTTSCEEEEE-
T ss_pred             CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcC-CCCCccEEEE-
Confidence            456899999999999998874  58899999999999999999864  35799999998876554432 3334676655 


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHh--cCcCCcEEEEEe--CcHHHHHHHHHHHHHcCC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK  282 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~--~LkpgG~l~~~~--~~~~~~~~~~~~l~~~g~  282 (336)
                        ||.....     ..+.+.++.+.+  .+.|+|.+.+-.  -.....+.+.+.+++.+.
T Consensus       166 --DPPYe~k-----~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          166 --DPSYERK-----EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS  218 (283)
T ss_dssp             --CCCCCST-----THHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred             --CCCCCCC-----cHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence              4432211     133455554444  466999988833  234456677777776665

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.31  E-value=0.00073  Score=58.53  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|+||||+.|.++...+.+.....|+|+|+-..--+.- ...+..|+..++|.++ |.+..       +|..+|.+..
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~-------~~~~~Dtllc  150 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYL-------PPEKCDTLLC  150 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGC-------CCCCCSEEEE
T ss_pred             CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeec-------CCccccEEEE
Confidence            5699999999999999888877667899999875422100 0012345677999999 87443       4555676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      .+....+...-...|.  -+.++.+.++|++ |.+++..
T Consensus       151 DIgeSs~~~~vE~~Rt--lrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          151 DIGESSPSPTVEESRT--IRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             CCCCCCSCHHHHHHHH--HHHHHHHGGGCSS-CEEEEEE
T ss_pred             ecCCCCCChhhhhhHH--HHHHHHHHHhccc-CCEEEEE
Confidence            5432211111011121  1478888999999 8888855

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.26  E-value=0.00044  Score=61.81  Aligned_cols=120  Identities=14%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+||||||++|.++...+....-..|+|+|+-..--+.- ...+..+...|.|+.+ |+...       +|..+|.+.+
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l-------~~~~~D~ivc  166 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYR-------PSECCDTLLC  166 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSS-------CCCCCSEEEE
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhC-------CCCCCCEEEE
Confidence            4599999999999999888776566899999875511000 0001223344888887 76432       3444566555


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEEEeCcHHHHHHHHHHH
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQSDIEEVMLRMKQQF  277 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~l  277 (336)
                      ......+...-...|-  -+.|+.+.++|++| |.|++..-. .|...+.+.+
T Consensus       167 DigeSs~~~~ve~~Rt--l~vLel~~~wL~~~~~~f~~KVl~-pY~~~v~e~l  216 (321)
T 3lkz_A          167 DIGESSSSAEVEEHRT--IRVLEMVEDWLHRGPREFCVKVLC-PYMPKVIEKM  216 (321)
T ss_dssp             CCCCCCSCHHHHHHHH--HHHHHHHHHHHTTCCCEEEEEESC-TTSHHHHHHH
T ss_pred             ECccCCCChhhhhhHH--HHHHHHHHHHhccCCCcEEEEEcC-CCChHHHHHH
Confidence            4332211111011111  14778888999999 999986633 3344443333

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.15  E-value=0.0032  Score=57.04  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=77.8

Q ss_pred             CCeEEEEeccccHHHHHHH----HhCCCC--eEEEEecCh--------HHHHHHHHHH-HHh---CCCc--EEEEecchh
Q 019743          147 QPLVVDIGSGNGLFLLGMA----RKRKDL--NFLGLEVNG--------KLVTHCRDSL-QLS---GITN--GYFIATNAT  206 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la----~~~p~~--~v~giDis~--------~~l~~a~~n~-~~~---~~~n--v~~~~~d~~  206 (336)
                      .-+|||+|.|+|...+...    +..|+.  +++.+|..+        .......+.. ...   ...+  +.++.+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3579999999998553322    235665  466777421        1112212211 111   1122  567889998


Q ss_pred             HHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743          207 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       207 ~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      +.+..+   +...+|.+++.   +......  ..+-...+++.+++.++|||.+.--+.    +..+++.|.+.||....
T Consensus       177 ~~l~~l---~~~~~Da~flD---gFsP~kN--PeLWs~e~f~~l~~~~~pgg~laTYta----ag~VRR~L~~aGF~V~k  244 (308)
T 3vyw_A          177 KRIKEV---ENFKADAVFHD---AFSPYKN--PELWTLDFLSLIKERIDEKGYWVSYSS----SLSVRKSLLTLGFKVGS  244 (308)
T ss_dssp             HHGGGC---CSCCEEEEEEC---CSCTTTS--GGGGSHHHHHHHHTTEEEEEEEEESCC----CHHHHHHHHHTTCEEEE
T ss_pred             HHHhhh---cccceeEEEeC---CCCcccC--cccCCHHHHHHHHHHhCCCcEEEEEeC----cHHHHHHHHHCCCEEEe
Confidence            765443   23457877653   2211111  125567999999999999999875332    45788899999998654


Q ss_pred             e
Q 019743          287 L  287 (336)
Q Consensus       287 ~  287 (336)
                      .
T Consensus       245 ~  245 (308)
T 3vyw_A          245 S  245 (308)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.04  E-value=0.00042  Score=62.12  Aligned_cols=108  Identities=11%  Similarity=0.022  Sum_probs=60.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..+||||||+.|.++..++++.+-..++|+|+...+...... ....+ .++..+..+.. .    +..++..+|.+..
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~d-i----~~l~~~~~DlVls  153 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSN-V----FTMPTEPSDTLLC  153 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCC-T----TTSCCCCCSEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-CceEEeecCce-e----eecCCCCcCEEee
Confidence            3678999999999999999987666789999997543111000 00001 12222222211 1    1113444565544


Q ss_pred             eC-CCCCCCcchh-hhhcchHHHHHHHHhcCcCC-cEEEEEe
Q 019743          226 QC-PNPDFNRPEH-RWRMVQRSLVEAVSDLLVHD-GKVFLQS  264 (336)
Q Consensus       226 ~~-~dp~~~~~~~-~~~l~~~~~l~~~~~~Lkpg-G~l~~~~  264 (336)
                      .. |+    ...+ .+..-.-.+++-+.++|+|| |.|++..
T Consensus       154 D~APn----sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv  191 (300)
T 3eld_A          154 DIGES----SSNPLVERDRTMKVLENFERWKHVNTENFCVKV  191 (300)
T ss_dssp             CCCCC----CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred             cCcCC----CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            32 22    1111 11111234588889999999 9999965

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.04  E-value=0.0071  Score=56.15  Aligned_cols=68  Identities=9%  Similarity=0.110  Sum_probs=49.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCC-CeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp-~~~d~i~  224 (336)
                      .+.++|||||+.|.++..++++  +..|+|||+.+-. .    .  .....+|.++++|++..     . |+ ..+|.++
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-~----~--l~~~~~V~~~~~d~~~~-----~-~~~~~~D~vv  275 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-Q----S--LMDTGQVTWLREDGFKF-----R-PTRSNISWMV  275 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-H----H--HHTTTCEEEECSCTTTC-----C-CCSSCEEEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-h----h--hccCCCeEEEeCccccc-----c-CCCCCcCEEE
Confidence            3689999999999999999988  6899999987421 1    1  12346899999998653     1 33 3478776


Q ss_pred             eeCC
Q 019743          225 IQCP  228 (336)
Q Consensus       225 ~~~~  228 (336)
                      ..+.
T Consensus       276 sDm~  279 (375)
T 4auk_A          276 CDMV  279 (375)
T ss_dssp             ECCS
T ss_pred             EcCC
Confidence            6543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.03  E-value=0.0024  Score=58.41  Aligned_cols=58  Identities=9%  Similarity=0.077  Sum_probs=49.7

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +..++|..||.|..+..+++. .|+.+++|+|+++.|++.|+ ++   ...++++++++..+.
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSAL  116 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGH
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHH
Confidence            678999999999999999988 47899999999999999984 43   236799999987664

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.56  E-value=0.0011  Score=60.05  Aligned_cols=90  Identities=13%  Similarity=0.048  Sum_probs=52.1

Q ss_pred             CcEEEEecchhHH--------HHhhhcCCCCeEEEEEeeCCCCCCCcchhh-hhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          196 TNGYFIATNATST--------FRSIVASYPGKLILVSIQCPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       196 ~nv~~~~~d~~~~--------~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+++++++|+.+.        +|+|++||||....-+...+........+. ....+..+++++.++|+|||.++++++.
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            4678999999762        677777777742110100000000000000 1112467889999999999999998763


Q ss_pred             H-------------HHHHHHHHHHHHcCCcce
Q 019743          267 E-------------EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       267 ~-------------~~~~~~~~~l~~~g~~~~  285 (336)
                      .             .+...+...+.+.||...
T Consensus       100 ~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~  131 (297)
T 2zig_A          100 VAVARRRFGRHLVFPLHADIQVRCRKLGFDNL  131 (297)
T ss_dssp             EEEECC----EEEECHHHHHHHHHHHTTCEEE
T ss_pred             CccccccCCcccccccHHHHHHHHHHcCCeee
Confidence            2             123467778888898644

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.53  E-value=0.01  Score=54.81  Aligned_cols=130  Identities=12%  Similarity=0.052  Sum_probs=73.4

Q ss_pred             CeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+++|+.||.|.+++.+.+..-. ..++++|+++.+++..+.|..     +..++++|+.+....-+  +...+|.++..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~--~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEF--DRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHH--HHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHc--CcCCcCEEEEc
Confidence            57999999999999999887422 368999999999999988863     33467788865311111  01123444444


Q ss_pred             CCCCCCCcchh-----hhh-cchHHHHHHHHhcCc--CCcEEEEEe--C--cHHHHHHHHHHHHHcCCccee
Q 019743          227 CPNPDFNRPEH-----RWR-MVQRSLVEAVSDLLV--HDGKVFLQS--D--IEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       227 ~~dp~~~~~~~-----~~~-l~~~~~l~~~~~~Lk--pgG~l~~~~--~--~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      +|-..+.....     ..| ..+..+++ +.+.++  |. .+++|.  +  .......+.+.|.+.||....
T Consensus        76 pPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~~~P~-~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T 1g55_A           76 PPCQPFTRIGRQGDMTDSRTNSFLHILD-ILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             CC------------------CHHHHHHH-HGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCcchhhcCCcCCccCccchHHHHHHH-HHHHhcCCCC-EEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence            33221111110     011 12234444 334556  65 444532  1  113466788888888986544

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.49  E-value=0.0074  Score=57.14  Aligned_cols=60  Identities=15%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             CCCeEEEEeccccHHHHHHH-HhCCC-CeEEEEecChHHHHHHHHHHHH---hCC-CcEEEEecch
Q 019743          146 AQPLVVDIGSGNGLFLLGMA-RKRKD-LNFLGLEVNGKLVTHCRDSLQL---SGI-TNGYFIATNA  205 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la-~~~p~-~~v~giDis~~~l~~a~~n~~~---~~~-~nv~~~~~d~  205 (336)
                      ++.+++|+|++.|.+++.++ +..+. .+|+++|.++...+..++|++.   ++. .|++++..-+
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            46799999999999999988 55654 8999999999999999999987   345 6888776443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.49  E-value=0.0028  Score=55.60  Aligned_cols=101  Identities=17%  Similarity=0.066  Sum_probs=55.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC----CeEEEEec--ChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLEV--NGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~----~~v~giDi--s~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~  219 (336)
                      +.+|+||||+.|.++...++..+-    ..++|+|+  .|-...       ..|+.=+.|.++ |+.+.       ++..
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv~~i~~~~G~Df~~~-------~~~~  139 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGWNIVTMKSGVDVFYK-------PSEI  139 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTGGGEEEECSCCGGGS-------CCCC
T ss_pred             CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCceEEEeeccCCccCC-------CCCC
Confidence            679999999999999999886222    33455552  111000       011111356657 87652       2334


Q ss_pred             EEEEEeeCCCCCCCcchh-hhhcchHHHHHHHHhcCcCCc-EEEEEe
Q 019743          220 LILVSIQCPNPDFNRPEH-RWRMVQRSLVEAVSDLLVHDG-KVFLQS  264 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~-~~~l~~~~~l~~~~~~LkpgG-~l~~~~  264 (336)
                      +|.+...+.... -.... ..|..+  .++-+.++|+||| .|++..
T Consensus       140 ~DvVLSDMAPnS-G~~~vD~~Rs~~--aL~~A~~~Lk~gG~~FvvKV  183 (269)
T 2px2_A          140 SDTLLCDIGESS-PSAEIEEQRTLR--ILEMVSDWLSRGPKEFCIKI  183 (269)
T ss_dssp             CSEEEECCCCCC-SCHHHHHHHHHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred             CCEEEeCCCCCC-CccHHHHHHHHH--HHHHHHHHhhcCCcEEEEEE
Confidence            565554432111 11111 112222  6677889999999 888865

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.46  E-value=0.023  Score=50.11  Aligned_cols=127  Identities=11%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             CCeEEEEeccccHHHHHHHHh-------CCCCeEEEEe-----cCh----------------------HHHHHH---HHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLE-----VNG----------------------KLVTHC---RDS  189 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-------~p~~~v~giD-----is~----------------------~~l~~a---~~n  189 (336)
                      ...|+|+||-.|..++.+|..       .++.+++|+|     ..+                      +.++..   .+|
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            467999999999988887652       4678999999     221                      112221   112


Q ss_pred             HHHhCC--CcEEEEecchhHHHHhhhc-CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe--
Q 019743          190 LQLSGI--TNGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--  264 (336)
Q Consensus       190 ~~~~~~--~nv~~~~~d~~~~~d~ivs-npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~--  264 (336)
                      .+..+.  ++++++.+++.+.++..+. +|...++.+++.. |-    .     .-+...++.+...|+|||.+++--  
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~----Y-----~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DL----Y-----EPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CC----H-----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cc----c-----chHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            222343  6899999999887666543 4555678777763 21    1     123467888999999999999822  


Q ss_pred             --CcHHHHHHHHHHHHHcCCc
Q 019743          265 --DIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       265 --~~~~~~~~~~~~l~~~g~~  283 (336)
                        .+....+.+.+.+.+++..
T Consensus       220 ~~~w~G~~~A~~ef~~~~~~~  240 (257)
T 3tos_A          220 NPKWPGENIAMRKVLGLDHAP  240 (257)
T ss_dssp             CTTCTHHHHHHHHHTCTTSSC
T ss_pred             CCCChHHHHHHHHHHhhCCCe
Confidence              1233334455555555544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.43  E-value=0.0061  Score=61.60  Aligned_cols=131  Identities=12%  Similarity=0.107  Sum_probs=81.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------CC-----CeEEEEec---ChHHHHHHHHH-----------HHHh-----C-
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR-------KD-----LNFLGLEV---NGKLVTHCRDS-----------LQLS-----G-  194 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~-------p~-----~~v~giDi---s~~~l~~a~~n-----------~~~~-----~-  194 (336)
                      .-+|+|+|.|+|...+.+.+.+       |.     .+++.+|.   +.+-+..|...           ....     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            3589999999999877765532       22     67999999   44444443211           1111     1 


Q ss_pred             ----C----CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          195 ----I----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       195 ----~----~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                          +    -.++++.+|+.+.+..+.......+|.+++.--.|.   ..  ..+-...++..+.++++|||.+.-.+. 
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~---~n--p~~w~~~~~~~l~~~~~~g~~~~t~~~-  212 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA---KN--PDMWNEQLFNAMARMTRPGGTFSTFTA-  212 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC-----C--CTTCSHHHHHHHHHHEEEEEEEEESCC-
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC---CC--hhhhhHHHHHHHHHHhCCCCEEEeccC-
Confidence                0    136678899987654432111345787766421111   11  113457899999999999999876433 


Q ss_pred             HHHHHHHHHHHHHcCCccee
Q 019743          267 EEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       267 ~~~~~~~~~~l~~~g~~~~~  286 (336)
                         ...+++.+.+.||....
T Consensus       213 ---~~~vr~~l~~aGf~~~~  229 (689)
T 3pvc_A          213 ---AGFVRRGLQQAGFNVTK  229 (689)
T ss_dssp             ---CHHHHHHHHHTTCEEEE
T ss_pred             ---cHHHHHHHHhCCeEEEe
Confidence               34678888899997544

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.05  E-value=0.018  Score=57.97  Aligned_cols=130  Identities=13%  Similarity=0.044  Sum_probs=81.3

Q ss_pred             CCeEEEEeccccHHHHHHHHh-------CC-----CCeEEEEec---ChHHHHHHHHH-----------HHHhC------
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-------RK-----DLNFLGLEV---NGKLVTHCRDS-----------LQLSG------  194 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-------~p-----~~~v~giDi---s~~~l~~a~~n-----------~~~~~------  194 (336)
                      ..+|+|+|.|+|...+...+.       +|     ..+++++|.   +.+.+..+...           .....      
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            358999999999877665443       22     256999998   77777644331           11111      


Q ss_pred             --------CCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          195 --------ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       195 --------~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                              .-.+++..+|+.+.+..+-......+|.+++.   +.....  ...+-...+++.+.+.++|||.+.-.+. 
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D---~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~t~~~-  220 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLD---GFAPAK--NPDMWTQNLFNAMARLARPGGTLATFTS-  220 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEEC---CSCGGG--CGGGSCHHHHHHHHHHEEEEEEEEESCC-
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEEC---CCCCcC--ChhhhhHHHHHHHHHHhCCCCEEEeccC-
Confidence                    01255677888776544321113457877663   221111  1124567999999999999999876443 


Q ss_pred             HHHHHHHHHHHHHcCCcce
Q 019743          267 EEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       267 ~~~~~~~~~~l~~~g~~~~  285 (336)
                         ...+++.+.+.||...
T Consensus       221 ---~~~vr~~L~~aGf~v~  236 (676)
T 3ps9_A          221 ---AGFVRRGLQDAGFTMQ  236 (676)
T ss_dssp             ---CHHHHHHHHHHTCEEE
T ss_pred             ---cHHHHHHHHhCCeEEE
Confidence               2467788888898654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.72  E-value=0.069  Score=49.81  Aligned_cols=128  Identities=12%  Similarity=0.009  Sum_probs=76.4

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-HHhhh-cC-CCCeEEEEE
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-FRSIV-AS-YPGKLILVS  224 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-~d~iv-sn-pp~~~d~i~  224 (336)
                      .+++|+.||.|.+++.+.+.. -..+.++|+++.+++..+.|.     .+..++++|+.+. .+.+. .. ++..+|.++
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            579999999999999998874 234679999999998887764     3567888998753 11110 00 233467666


Q ss_pred             eeCCCCCCCcchhh-----hhcchHHHHHHHHhcCcCCcEEEEEe-------CcHHHHHHHHHHHHHcCCcc
Q 019743          225 IQCPNPDFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       225 ~~~~dp~~~~~~~~-----~~l~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~l~~~g~~~  284 (336)
                      ..+|-..+......     +...+..+++.+ +.++|. .+++|-       ......+.+. .|.+.||..
T Consensus        77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v-~~~~P~-~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLV-SELQPL-FFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             ECCCCCTTC-------CHHHHHHHHHHHHHH-HHHCCS-EEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             ecCCCCCcccccCCCCCCchHHHHHHHHHHH-HHhCCC-EEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            66554333222111     111233444433 345775 344433       2233566677 888889876

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.70  E-value=0.027  Score=51.54  Aligned_cols=126  Identities=12%  Similarity=0.025  Sum_probs=76.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+++|+.||.|.+++.+.+.. -..+.++|+++.+++..+.|....   .    ++|+.+.....+  |  .+|.++..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~---~----~~Di~~~~~~~~--~--~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEK---P----EGDITQVNEKTI--P--DHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCC---C----BSCGGGSCGGGS--C--CCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCC---C----cCCHHHcCHhhC--C--CCCEEEEC
Confidence            4689999999999999998774 345889999999999998886321   1    677765311111  2  24655555


Q ss_pred             CCCCCCCcchh-----hhh-cchHHHHHHHHhcCcCCcEEEEEeC-------cHHHHHHHHHHHHHcCCccee
Q 019743          227 CPNPDFNRPEH-----RWR-MVQRSLVEAVSDLLVHDGKVFLQSD-------IEEVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       227 ~~dp~~~~~~~-----~~~-l~~~~~l~~~~~~LkpgG~l~~~~~-------~~~~~~~~~~~l~~~g~~~~~  286 (336)
                      +|-..+.....     ..| ..+..+++.+. .++|. .+++|--       .....+.+.+.|++.||....
T Consensus        79 pPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~-~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVR-EKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHH-HHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             CCCCCcchhcccCCCcchhhHHHHHHHHHHH-hccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence            54433322111     111 12344554443 45775 5556431       113466788888889987544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.98  E-value=0.044  Score=49.96  Aligned_cols=47  Identities=17%  Similarity=0.114  Sum_probs=39.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecCh---HHHHHHHHHHHHhC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG---KLVTHCRDSLQLSG  194 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~---~~l~~a~~n~~~~~  194 (336)
                      ++..|||--||||..+++..+.  +.+++|+|+++   ..++.|++++.+.+
T Consensus       242 ~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          242 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3678999999999999998887  67899999999   99999999887554

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.92  E-value=0.12  Score=46.15  Aligned_cols=100  Identities=11%  Similarity=0.092  Sum_probs=61.3

Q ss_pred             CCCCeEEEEec------cccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCC
Q 019743          145 PAQPLVVDIGS------GNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP  217 (336)
Q Consensus       145 ~~~~~vLDiGc------GsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp  217 (336)
                      +.+.+|||+|+      -.|.  ..+.+..|+ +.++++|+.+-.           ...+ .++++|....    .  ..
T Consensus       108 p~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD~~~~----~--~~  167 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGDCATV----H--TA  167 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESCGGGE----E--ES
T ss_pred             cCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEcccccc----c--cC
Confidence            35789999996      5565  344455776 699999998642           1123 4599996542    1  12


Q ss_pred             CeEEEEEeeCCCCCCCcchhh---hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          218 GKLILVSIQCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~---~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..+|.+...+...........   ...+.+..++-+.+.|+|||.|++..
T Consensus       168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV  217 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  217 (344)
T ss_dssp             SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence            345665554432211111111   12245778888899999999999955

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.82  E-value=0.029  Score=51.23  Aligned_cols=47  Identities=21%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      ++..|||--||||..+++..+.  +.+++|+|+++.+++.|+++++..+
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            4679999999999999888777  6899999999999999999876544

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.64  E-value=0.12  Score=47.35  Aligned_cols=132  Identities=11%  Similarity=-0.004  Sum_probs=75.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeE-EEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-DLNF-LGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v-~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ..+++|+.||.|.+++.+.+..- -..+ .++|+++.+.+.-+.|...     . ++++|+.+.-..-+  |...+|.++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i--~~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQI--ESLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHH--HHTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHh--ccCCCCEEE
Confidence            46899999999999999987732 2345 7999999999998887531     1 55677765311112  112356555


Q ss_pred             eeCCCCCC--Ccchh-----hhh-cchHHHHHHHHhcC--cCCcEEEEEeCc----HHHHHHHHHHHHHcCCcceee
Q 019743          225 IQCPNPDF--NRPEH-----RWR-MVQRSLVEAVSDLL--VHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       225 ~~~~dp~~--~~~~~-----~~~-l~~~~~l~~~~~~L--kpgG~l~~~~~~----~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ..+|-..+  .....     ..| .....+++.+.+.+  +|. .+++|.-.    ....+.+.+.|++.||.....
T Consensus        82 ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~  157 (327)
T 3qv2_A           82 MSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYIKDI  157 (327)
T ss_dssp             ECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEEEEE
Confidence            55554333  11110     111 11223333133344  453 55555411    134667888889999875543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.02  E-value=0.25  Score=45.58  Aligned_cols=94  Identities=16%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      +.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++    .|.+.+.-. ..|+.+.+....   +..+|.+
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~---~gg~D~v  262 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT---DGGVNFA  262 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT---TSCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc---CCCCcEE
Confidence            56899999986 88889999876 45 79999999998888753    454432111 122222222221   2245654


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-...              ....++.+.+.|+++|++.+
T Consensus       263 id~~g--------------~~~~~~~~~~~l~~~G~iv~  287 (371)
T 1f8f_A          263 LESTG--------------SPEILKQGVDALGILGKIAV  287 (371)
T ss_dssp             EECSC--------------CHHHHHHHHHTEEEEEEEEE
T ss_pred             EECCC--------------CHHHHHHHHHHHhcCCEEEE
Confidence            32211              12567888899999999887

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.96  E-value=0.23  Score=45.34  Aligned_cols=96  Identities=15%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+||=+|+|. |.+++.+|+.....+|+++|.+++.++.++    +.|.+.+.-...|+.+.+....  ....+|.++-
T Consensus       172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~v~~~t--~g~g~d~v~d  245 (345)
T 3jv7_A          172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR----EVGADAAVKSGAGAADAIRELT--GGQGATAVFD  245 (345)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH----HTTCSEEEECSTTHHHHHHHHH--GGGCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEEEcCCCcHHHHHHHHh--CCCCCeEEEE
Confidence            56788889875 888899998865789999999999888775    3565533222223333222222  1223454432


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ....              ...++.+.+.|+++|++.+
T Consensus       246 ~~G~--------------~~~~~~~~~~l~~~G~iv~  268 (345)
T 3jv7_A          246 FVGA--------------QSTIDTAQQVVAVDGHISV  268 (345)
T ss_dssp             SSCC--------------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCC--------------HHHHHHHHHHHhcCCEEEE
Confidence            2111              2477888899999999887

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.93  E-value=0.36  Score=44.23  Aligned_cols=95  Identities=13%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEecc---hhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d---~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||-+|+|+ |.+++.+|+.. ++ +|+++|.+++.++.++    +.|.+.+  +..+   ..+..+.+...-+..+|
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~~~i~~~~~~g~D  244 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADLV--LQISKESPQEIARKVEGQLGCKPE  244 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSEE--EECSSCCHHHHHHHHHHHHTSCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCEE--EcCcccccchHHHHHHHHhCCCCC
Confidence            56888899985 88889999887 55 8999999999888775    3465432  2222   12211222110012345


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-...              ....++.+.+.|+++|++.+
T Consensus       245 ~vid~~g--------------~~~~~~~~~~~l~~~G~iv~  271 (356)
T 1pl8_A          245 VTIECTG--------------AEASIQAGIYATRSGGTLVL  271 (356)
T ss_dssp             EEEECSC--------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEECCC--------------ChHHHHHHHHHhcCCCEEEE
Confidence            4332211              12466788899999999887

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.61  E-value=0.3  Score=44.42  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe--cchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~--~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      +.+||=+|+|. |.+++.+|+.. +++|+++|.+++.++.+++    .|.+.+ +-.  .|+.+.+.. .  .. .+|.+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~-~--~g-~~d~v  236 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEVA-VNARDTDPAAWLQK-E--IG-GAHGV  236 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEE-EETTTSCHHHHHHH-H--HS-SEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCEE-EeCCCcCHHHHHHH-h--CC-CCCEE
Confidence            56788899975 89999999987 6799999999998887743    454432 111  122222222 1  11 34544


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +....              ....++.+.+.|+++|++.+
T Consensus       237 id~~g--------------~~~~~~~~~~~l~~~G~iv~  261 (340)
T 3s2e_A          237 LVTAV--------------SPKAFSQAIGMVRRGGTIAL  261 (340)
T ss_dssp             EESSC--------------CHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeCC--------------CHHHHHHHHHHhccCCEEEE
Confidence            33211              13677888899999999887

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.23  E-value=0.76  Score=35.88  Aligned_cols=110  Identities=14%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEEEE
Q 019743          148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILV  223 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i  223 (336)
                      ..|+=+|||  .++..+|+..  .+..|+++|.+++.++.+++    .   .+.++.+|..+.  +...   .....+.+
T Consensus         8 ~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a---~i~~ad~v   75 (140)
T 3fwz_A            8 NHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLA---HLECAKWL   75 (140)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHT---TGGGCSEE
T ss_pred             CCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhc---CcccCCEE
Confidence            467777775  4555555432  36789999999998876643    2   356788887542  2211   11223444


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      ++..+++.          . -..+-...+.+.|+..++.......+.    +.|.+.|-..
T Consensus        76 i~~~~~~~----------~-n~~~~~~a~~~~~~~~iiar~~~~~~~----~~l~~~G~d~  121 (140)
T 3fwz_A           76 ILTIPNGY----------E-AGEIVASARAKNPDIEIIARAHYDDEV----AYITERGANQ  121 (140)
T ss_dssp             EECCSCHH----------H-HHHHHHHHHHHCSSSEEEEEESSHHHH----HHHHHTTCSE
T ss_pred             EEECCChH----------H-HHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCCCE
Confidence            44444321          1 122333456677888888877655443    3455667653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.11  E-value=0.25  Score=45.24  Aligned_cols=131  Identities=12%  Similarity=0.070  Sum_probs=75.8

Q ss_pred             CeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          148 PLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      .+++|+-||.|.+.+.+.+..-+ ..+.++|+++.+.+.-+.|..     +..++.+|+.+.-..-+  |...+|.++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~--~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVI--KKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHH--HHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHh--ccCCCCEEEec
Confidence            47999999999999999877422 357899999999988877652     33466788765311112  11134555544


Q ss_pred             CCCCCCCcchh-----hhh-cchHHHHHHHHhcCc-CCcEEEEEeC----cHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEH-----RWR-MVQRSLVEAVSDLLV-HDGKVFLQSD----IEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~-----~~~-l~~~~~l~~~~~~Lk-pgG~l~~~~~----~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      +|-..+.....     ..| .....+++-+ +.++ |. .+++|.-    .....+.+.+.|++.||.....
T Consensus        77 pPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~  146 (333)
T 4h0n_A           77 PPCQPFTRNGKYLDDNDPRTNSFLYLIGIL-DQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEF  146 (333)
T ss_dssp             CCCCCSEETTEECCTTCTTSCCHHHHHHHG-GGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCCcchhhhhhccCCcCcccccHHHHHHHH-HHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEE
Confidence            44332221110     111 1233444433 4454 64 4555441    1124667888889989876543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.03  E-value=0.58  Score=42.75  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=58.3

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe--cchhHHHHhhhcC-CCCeEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVAS-YPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~--~d~~~~~d~ivsn-pp~~~d~  222 (336)
                      +.+||=+|+|. |.+++.+|+.. +++|+++|.+++.++.++    +.|.+.+.-..  .+..+.+...... ....+|.
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK----NCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HhCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence            56788899874 78888888876 677999999999888775    34654321111  2222222222210 0112344


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-...              ....++.+.+.|+++|++.+
T Consensus       244 vid~~g--------------~~~~~~~~~~~l~~~G~iv~  269 (352)
T 1e3j_A          244 TIDCSG--------------NEKCITIGINITRTGGTLML  269 (352)
T ss_dssp             EEECSC--------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             EEECCC--------------CHHHHHHHHHHHhcCCEEEE
Confidence            332211              12456778889999999887

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.68  E-value=0.28  Score=45.83  Aligned_cols=107  Identities=11%  Similarity=0.012  Sum_probs=60.8

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cch-hHHHHhhhcCCCCe
Q 019743          146 AQPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNA-TSTFRSIVASYPGK  219 (336)
Q Consensus       146 ~~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~-~~~~d~ivsnpp~~  219 (336)
                      .+.+||-+|+|. |.+++.+|+.. ++ +|+++|.|++.++.++    +.|..   .+.   .|. .+.+....  +...
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~---~i~~~~~~~~~~~~~~~~--~g~g  254 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLS----DAGFE---TIDLRNSAPLRDQIDQIL--GKPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHH----TTTCE---EEETTSSSCHHHHHHHHH--SSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCc---EEcCCCcchHHHHHHHHh--CCCC
Confidence            357899999986 88999999876 45 8999999999888774    34542   222   222 22222222  1223


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +|.++-....+..........+.....++.+.+.|+++|++.+
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence            5654332221100000000000011467788899999999876

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.59  E-value=0.5  Score=42.90  Aligned_cols=87  Identities=17%  Similarity=0.069  Sum_probs=51.1

Q ss_pred             CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCC------CcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH--
Q 019743          196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF------NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--  267 (336)
Q Consensus       196 ~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~------~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~--  267 (336)
                      ++..++++|..+.+.. +  |+.++|.|++.-|-...      ...+..-.......++++.++|+|||.+++.++..  
T Consensus        13 ~~~~ii~gD~~~~l~~-l--~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~   89 (323)
T 1boo_A           13 SNGSMYIGDSLELLES-F--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYM   89 (323)
T ss_dssp             SSEEEEESCHHHHGGG-S--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEE
T ss_pred             CCceEEeCcHHHHHhh-C--CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEec
Confidence            3578899998764332 1  34556655543221100      00111111235688899999999999999987653  


Q ss_pred             --------HHHHHHHHHHHHcCCcce
Q 019743          268 --------EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       268 --------~~~~~~~~~l~~~g~~~~  285 (336)
                              .....+.+.++..||...
T Consensus        90 ~g~~~~~~~~~~~i~~~~~~~Gf~~~  115 (323)
T 1boo_A           90 KGVPARSIYNFRVLIRMIDEVGFFLA  115 (323)
T ss_dssp             TTEEEECCHHHHHHHHHHHTTCCEEE
T ss_pred             CCCcccccchHHHHHHHHHhCCCEEE
Confidence                    123455566778887543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.81  E-value=0.52  Score=43.07  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=58.8

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++    .|.+.  ++.   .|+.+.+....  ....+|
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~v~~~t--~g~g~D  237 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALE----YGATD--IINYKNGDIVEQILKAT--DGKGVD  237 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHH----HTCCE--EECGGGSCHHHHHHHHT--TTCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCce--EEcCCCcCHHHHHHHHc--CCCCCC
Confidence            56788889875 88888899876 45 89999999988887754    45542  222   22222222222  222356


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-....+              ..++.+.+.|+++|++.+
T Consensus       238 ~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~  264 (352)
T 3fpc_A          238 KVVIAGGDV--------------HTFAQAVKMIKPGSDIGN  264 (352)
T ss_dssp             EEEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCCh--------------HHHHHHHHHHhcCCEEEE
Confidence            554322222              456777889999999886

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.79  E-value=1.9  Score=39.30  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=74.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC---------------------CCcEEEEecch
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------------------ITNGYFIATNA  205 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~---------------------~~nv~~~~~d~  205 (336)
                      ...|+.||||.......|....++.+++-+|. |+.++.-++.+.+.+                     ..+.+++-+|+
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            46799999999999999988777888888887 888777766665541                     25789999998


Q ss_pred             hHH--HHhhhcC--CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE-EEeC-----cHHHHHHHHH
Q 019743          206 TST--FRSIVAS--YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF-LQSD-----IEEVMLRMKQ  275 (336)
Q Consensus       206 ~~~--~d~ivsn--pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~-~~~~-----~~~~~~~~~~  275 (336)
                      .+.  ++..+..  .+.....+.....-.+...      ....++++.+.+.+ |+|.++ ++.-     .......|..
T Consensus       177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~------~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~  249 (334)
T 1rjd_A          177 NDITETTRLLDVCTKREIPTIVISECLLCYMHN------NESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQS  249 (334)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH------HHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHH
T ss_pred             CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH------HHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHH
Confidence            752  2221111  1122222222211111111      12357788887776 677654 4431     1133444555


Q ss_pred             HHHH
Q 019743          276 QFLE  279 (336)
Q Consensus       276 ~l~~  279 (336)
                      .+.+
T Consensus       250 ~l~~  253 (334)
T 1rjd_A          250 NLKE  253 (334)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            5554

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=91.56  E-value=0.43  Score=43.93  Aligned_cols=95  Identities=17%  Similarity=0.256  Sum_probs=60.2

Q ss_pred             CCeEEEEe-cc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIG-SG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiG-cG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=+| +| .|.+++.+|+....++|+++|.+++.++.+++    .|.+.+.-...|+.+.+...   .+..+|.++
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~vi~~~~~~~~~v~~~---~~~g~Dvvi  244 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHHVIDHSKPLAAEVAAL---GLGAPAFVF  244 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSEEECTTSCHHHHHHTT---CSCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCCHHHHHHHh---cCCCceEEE
Confidence            45788888 54 68899999987557899999999998887753    56543221112222222221   233456443


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -..              -....++.+.+.|+++|++.+
T Consensus       245 d~~--------------g~~~~~~~~~~~l~~~G~iv~  268 (363)
T 4dvj_A          245 STT--------------HTDKHAAEIADLIAPQGRFCL  268 (363)
T ss_dssp             ECS--------------CHHHHHHHHHHHSCTTCEEEE
T ss_pred             ECC--------------CchhhHHHHHHHhcCCCEEEE
Confidence            221              113577888899999999987

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.81  E-value=0.85  Score=42.35  Aligned_cols=108  Identities=12%  Similarity=0.042  Sum_probs=60.4

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec--c-hhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--N-ATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~--d-~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=+|+|. |.+++.+|+...-.+|+++|.+++.++.++    +.|.+ + +...  + +.+.+....  ....+|.
T Consensus       186 g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~----~lGa~-~-i~~~~~~~~~~~v~~~t--~g~g~Dv  257 (398)
T 1kol_A          186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQGFE-I-ADLSLDTPLHEQIAALL--GEPEVDC  257 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCE-E-EETTSSSCHHHHHHHHH--SSSCEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH----HcCCc-E-EccCCcchHHHHHHHHh--CCCCCCE
Confidence            56788899875 888999999873337999999999888875    34643 2 2111  2 222222222  1223555


Q ss_pred             EEeeCCCCCCC-cchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFN-RPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-....+... ..+..........++.+.+.|+++|++.+
T Consensus       258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence            43322211000 00000000112467888899999999876

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.81  E-value=0.71  Score=40.36  Aligned_cols=83  Identities=13%  Similarity=0.085  Sum_probs=47.6

Q ss_pred             EEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCc------chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHH
Q 019743          198 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML  271 (336)
Q Consensus       198 v~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~------~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  271 (336)
                      .+++++|+.+.+..+   |+.++|.|++.-|-.....      .+..-..+...+++++.++|+|+|.+++.++... ..
T Consensus         5 ~~l~~gD~~~~l~~l---~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~-~~   80 (260)
T 1g60_A            5 NKIHQMNCFDFLDQV---ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFN-CA   80 (260)
T ss_dssp             SSEEECCHHHHHHHS---CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHH-HH
T ss_pred             CeEEechHHHHHHhc---cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHH-HH
Confidence            346788887644332   3455666555422111000      0011112346788899999999999999865433 44


Q ss_pred             HHHHHHHHcCCcc
Q 019743          272 RMKQQFLEYGKGK  284 (336)
Q Consensus       272 ~~~~~l~~~g~~~  284 (336)
                      .+...+.+.||..
T Consensus        81 ~~~~~~~~~gf~~   93 (260)
T 1g60_A           81 FICQYLVSKGMIF   93 (260)
T ss_dssp             HHHHHHHHTTCEE
T ss_pred             HHHHHHHhhccce
Confidence            5556677777753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.76  E-value=0.96  Score=41.68  Aligned_cols=91  Identities=13%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+||-+|+|. |.+++.+|+.. +++|+++|.|++.++.+++    .|.+.+  +..+-.+....+.    ..+|.++-
T Consensus       195 g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~~v--i~~~~~~~~~~~~----~g~Dvvid  263 (369)
T 1uuf_A          195 GKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADEV--VNSRNADEMAAHL----KSFDFILN  263 (369)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEE--EETTCHHHHHTTT----TCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE--eccccHHHHHHhh----cCCCEEEE
Confidence            56888899975 88888888876 6789999999998887753    454432  2221112122221    23454432


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ....+              ..++.+.+.|+++|++.+
T Consensus       264 ~~g~~--------------~~~~~~~~~l~~~G~iv~  286 (369)
T 1uuf_A          264 TVAAP--------------HNLDDFTTLLKRDGTMTL  286 (369)
T ss_dssp             CCSSC--------------CCHHHHHTTEEEEEEEEE
T ss_pred             CCCCH--------------HHHHHHHHHhccCCEEEE
Confidence            22211              234566788999998876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.74  E-value=0.58  Score=42.68  Aligned_cols=86  Identities=17%  Similarity=0.145  Sum_probs=56.0

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+||=+|+|. |.+++.+|+.. +++|+++|.+++.++.++    +.|.+.+.   .+...     +.  . .+|.++-
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~v~---~~~~~-----~~--~-~~D~vid  240 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDAL----SMGVKHFY---TDPKQ-----CK--E-ELDFIIS  240 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHH----HTTCSEEE---SSGGG-----CC--S-CEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----hcCCCeec---CCHHH-----Hh--c-CCCEEEE
Confidence            56788899975 88888899876 679999999999888774    35655332   33211     11  1 3454432


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ....+              ..++.+.+.|+++|++.+
T Consensus       241 ~~g~~--------------~~~~~~~~~l~~~G~iv~  263 (348)
T 3two_A          241 TIPTH--------------YDLKDYLKLLTYNGDLAL  263 (348)
T ss_dssp             CCCSC--------------CCHHHHHTTEEEEEEEEE
T ss_pred             CCCcH--------------HHHHHHHHHHhcCCEEEE
Confidence            22221              234667788899998887

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.60  E-value=1.2  Score=40.51  Aligned_cols=94  Identities=14%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch-hHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~-~~~~d~ivsnpp~~~d~i  223 (336)
                      +.+||=+|+|. |.+++.+|+.. |+++|+++|.|++.++.+++    .|.+.+  +..+- .+....+. + ...+|.+
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~~~~~~~~~-~-g~g~D~v  242 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADYV--SEMKDAESLINKLT-D-GLGASIA  242 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSEE--ECHHHHHHHHHHHH-T-TCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCEE--eccccchHHHHHhh-c-CCCccEE
Confidence            56899999874 77888888874 56899999999998887754    454432  22111 11112222 1 2235554


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-....              ...++.+.+.|+++|++.+
T Consensus       243 id~~g~--------------~~~~~~~~~~l~~~G~iv~  267 (344)
T 2h6e_A          243 IDLVGT--------------EETTYNLGKLLAQEGAIIL  267 (344)
T ss_dssp             EESSCC--------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCC--------------hHHHHHHHHHhhcCCEEEE
Confidence            322111              2467788889999999876

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.50  E-value=1.2  Score=41.03  Aligned_cols=94  Identities=11%  Similarity=0.112  Sum_probs=58.4

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+|. |.+++.+|+.. ++ +|+++|.+++.++.++    +.|.+.+--..   .++.+.+.....   ..+|
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~---~g~D  264 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAK----VFGATDFVNPNDHSEPISQVLSKMTN---GGVD  264 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCCEEECGGGCSSCHHHHHHHHHT---SCBS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HhCCceEEeccccchhHHHHHHHHhC---CCCC
Confidence            56788899874 78888889886 55 8999999999888775    34654321111   122222222221   1345


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      .++-...              ....++.+.+.|+++ |++.+
T Consensus       265 ~vid~~g--------------~~~~~~~~~~~l~~~~G~iv~  292 (374)
T 1cdo_A          265 FSLECVG--------------NVGVMRNALESCLKGWGVSVL  292 (374)
T ss_dssp             EEEECSC--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCC--------------CHHHHHHHHHHhhcCCcEEEE
Confidence            4332211              125678888999999 99877

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.39  E-value=1.6  Score=40.06  Aligned_cols=98  Identities=18%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-EecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=+|+|. |.+++.+|+...-.+|+++|.+++.++.+++    .|.+.+.- -..|+.+.+......-+..+|.++
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi  258 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLVPGGVDVVI  258 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence            56787789875 8888899988733389999999998887754    46543211 112322221110001122456543


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -...              ....++.+.+.|+++|++.+
T Consensus       259 d~~G--------------~~~~~~~~~~~l~~~G~vv~  282 (370)
T 4ej6_A          259 ECAG--------------VAETVKQSTRLAKAGGTVVI  282 (370)
T ss_dssp             ECSC--------------CHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCC--------------CHHHHHHHHHHhccCCEEEE
Confidence            2211              12567888899999999987

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=90.26  E-value=1.2  Score=40.84  Aligned_cols=94  Identities=13%  Similarity=0.078  Sum_probs=58.7

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe-cchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~-~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=+|+|. |..++.+|+.. +++++++|.+++.++.+++    .|.+.+.-.. .|+.+.+....  +...+|.++
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~~--~g~g~D~vi  262 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADHGINRLEEDWVERVYALT--GDRGADHIL  262 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH--TTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCEEEcCCcccHHHHHHHHh--CCCCceEEE
Confidence            56889999875 78888888876 6799999999998887643    4654322100 12222222222  222356544


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -... +              ..+..+.+.|+++|++.+
T Consensus       263 d~~g-~--------------~~~~~~~~~l~~~G~iv~  285 (363)
T 3uog_A          263 EIAG-G--------------AGLGQSLKAVAPDGRISV  285 (363)
T ss_dssp             EETT-S--------------SCHHHHHHHEEEEEEEEE
T ss_pred             ECCC-h--------------HHHHHHHHHhhcCCEEEE
Confidence            3322 1              234666788999999887

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=90.00  E-value=1.8  Score=39.52  Aligned_cols=94  Identities=13%  Similarity=0.058  Sum_probs=57.9

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEe------cchhHHHHhhhcCCCC
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIA------TNATSTFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~------~d~~~~~d~ivsnpp~  218 (336)
                      +.+||=+|+|. |.+++.+|+.. +++ |+++|.+++.++.+++.    . ..+....      .|+.+.+....  ...
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l----~-~~~~~~~~~~~~~~~~~~~v~~~t--~g~  251 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI----C-PEVVTHKVERLSAEESAKKIVESF--GGI  251 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH----C-TTCEEEECCSCCHHHHHHHHHHHT--SSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----c-hhcccccccccchHHHHHHHHHHh--CCC
Confidence            55677789875 88889999887 555 99999999999888754    1 2222222      12222222211  122


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .+|.++-...              ....++.+.+.|+++|++.+
T Consensus       252 g~Dvvid~~g--------------~~~~~~~~~~~l~~~G~iv~  281 (363)
T 3m6i_A          252 EPAVALECTG--------------VESSIAAAIWAVKFGGKVFV  281 (363)
T ss_dssp             CCSEEEECSC--------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCEEEECCC--------------ChHHHHHHHHHhcCCCEEEE
Confidence            3444332211              12467888899999999987

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.70  E-value=1.2  Score=40.37  Aligned_cols=93  Identities=15%  Similarity=0.072  Sum_probs=58.0

Q ss_pred             CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||-+|+  |.|..++.+++.. +++|+++|.+++.++.+++    .+.+.+ +-.   .++.+.+..+..  . .+|
T Consensus       170 g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~~~-~d~~~~~~~~~~~~~~~~--~-~~D  240 (347)
T 2hcy_A          170 GHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGEVF-IDFTKEKDIVGAVLKATD--G-GAH  240 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCCEE-EETTTCSCHHHHHHHHHT--S-CEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCceE-EecCccHhHHHHHHHHhC--C-CCC
Confidence            578999998  4677777777765 6799999999887776643    354322 111   122223333331  1 356


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-...              ....++.+.+.|+++|++.+
T Consensus       241 ~vi~~~g--------------~~~~~~~~~~~l~~~G~iv~  267 (347)
T 2hcy_A          241 GVINVSV--------------SEAAIEASTRYVRANGTTVL  267 (347)
T ss_dssp             EEEECSS--------------CHHHHHHHTTSEEEEEEEEE
T ss_pred             EEEECCC--------------cHHHHHHHHHHHhcCCEEEE
Confidence            5443211              12567888899999999876

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=89.68  E-value=1.1  Score=41.06  Aligned_cols=94  Identities=9%  Similarity=0.007  Sum_probs=58.4

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+|. |.+++.+|+.. ++ +|+++|.+++.++.++    +.|.+.+--..   .|+.+.+....   +..+|
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~t---~gg~D  263 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATECLNPKDYDKPIYEVICEKT---NGGVD  263 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHT---TSCBS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCcEEEecccccchHHHHHHHHh---CCCCC
Confidence            56888899874 78888888876 45 8999999999888775    35654321111   12322222222   12345


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      .++-...              ....++.+.+.|+++ |++.+
T Consensus       264 vvid~~g--------------~~~~~~~~~~~l~~~~G~iv~  291 (373)
T 1p0f_A          264 YAVECAG--------------RIETMMNALQSTYCGSGVTVV  291 (373)
T ss_dssp             EEEECSC--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCC--------------CHHHHHHHHHHHhcCCCEEEE
Confidence            4432211              125678888999999 99887

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=89.66  E-value=1.4  Score=40.66  Aligned_cols=93  Identities=17%  Similarity=0.102  Sum_probs=58.0

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecc------hhHHHHhhhcCCCC
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN------ATSTFRSIVASYPG  218 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d------~~~~~d~ivsnpp~  218 (336)
                      +.+||=+|+| .|.+++.+|+.. + .+|+++|.+++.++.++    +.|.+.+  +..+      +.+.+....  +..
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~v--i~~~~~~~~~~~~~v~~~~--~g~  266 (380)
T 1vj0_A          196 GKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAE----EIGADLT--LNRRETSVEERRKAIMDIT--HGR  266 (380)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHHHHT--TTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHH----HcCCcEE--EeccccCcchHHHHHHHHh--CCC
Confidence            5689999976 477888888886 5 59999999999888775    3465432  2222      112222222  122


Q ss_pred             eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .+|.++-....+              ..++.+.+.|+++|++.+
T Consensus       267 g~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~  296 (380)
T 1vj0_A          267 GADFILEATGDS--------------RALLEGSELLRRGGFYSV  296 (380)
T ss_dssp             CEEEEEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             CCcEEEECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            356544322111              356677788999998876

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=89.29  E-value=1.6  Score=40.11  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=58.2

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+|. |.+++.+|+.. ++ +|+++|.+++.++.++    +.|.+.+--..   .|+.+.+....  + ..+|
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~v~~~~--~-~g~D  267 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATDCLNPRELDKPVQDVITELT--A-GGVD  267 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHH--T-SCBS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCcEEEccccccchHHHHHHHHh--C-CCcc
Confidence            56788899874 78888889887 55 8999999998887774    34654321111   12322222222  1 1345


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      .++-...              ....++.+.+.|+++ |++.+
T Consensus       268 vvid~~G--------------~~~~~~~~~~~l~~~~G~iv~  295 (376)
T 1e3i_A          268 YSLDCAG--------------TAQTLKAAVDCTVLGWGSCTV  295 (376)
T ss_dssp             EEEESSC--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCC--------------CHHHHHHHHHHhhcCCCEEEE
Confidence            4332211              125678888999999 99876

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=89.22  E-value=0.89  Score=37.55  Aligned_cols=94  Identities=9%  Similarity=-0.006  Sum_probs=55.4

Q ss_pred             CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe--cchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~--~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||-.|+  |.|..+..+++.. +++|+++|.+++.++.+++    .+...+ +-.  .+..+.+.....  ...+|.
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~~~-~d~~~~~~~~~~~~~~~--~~~~D~  110 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LGVEYV-GDSRSVDFADEILELTD--GYGVDV  110 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TCCSEE-EETTCSTHHHHHHHHTT--TCCEEE
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEE-eeCCcHHHHHHHHHHhC--CCCCeE
Confidence            578999994  4566666666654 5789999999987766542    343321 111  122222222221  223565


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ++-. .-+              ..++.+.+.|+++|++.+.
T Consensus       111 vi~~-~g~--------------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          111 VLNS-LAG--------------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EEEC-CCT--------------HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEC-Cch--------------HHHHHHHHHhccCCEEEEE
Confidence            4432 111              4567888999999998873

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=89.19  E-value=1.4  Score=40.91  Aligned_cols=112  Identities=16%  Similarity=0.244  Sum_probs=73.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ...||.|+.+.|.++..++...    ++.+.=|--+...++.|++.+++++  +++...-         ..++..++.+.
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~  105 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGIDESSVKFLDST---------ADYPQQPGVVL  105 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT---------SCCCSSCSEEE
T ss_pred             CCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCCccceEecccc---------cccccCCCEEE
Confidence            3569999999999999998653    2344336666677888999998864  6665431         11355566666


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  280 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  280 (336)
                      +..|...         -.....+..+...|+||+.+++..........+.+.|.+.
T Consensus       106 ~~lpk~~---------~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~  152 (375)
T 4dcm_A          106 IKVPKTL---------ALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV  152 (375)
T ss_dssp             EECCSCH---------HHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred             EEcCCCH---------HHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence            6544221         1235778889999999999987554443334555666554

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.17  E-value=1.6  Score=40.15  Aligned_cols=94  Identities=11%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+|. |.+++.+|+.. ++ +|+++|.+++.++.++    +.|.+.+--..   .++.+.+..+.   +..+|
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~---~~g~D  263 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAK----EVGATECVNPQDYKKPIQEVLTEMS---NGGVD  263 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHT---TSCBS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCceEecccccchhHHHHHHHHh---CCCCc
Confidence            56788899875 78888888886 55 8999999999888774    34554321111   12222222221   12345


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      .++-....              ...++.+.+.|+++ |++.+
T Consensus       264 ~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~  291 (374)
T 2jhf_A          264 FSFEVIGR--------------LDTMVTALSCCQEAYGVSVI  291 (374)
T ss_dssp             EEEECSCC--------------HHHHHHHHHHBCTTTCEEEE
T ss_pred             EEEECCCC--------------HHHHHHHHHHhhcCCcEEEE
Confidence            44322111              25677888899999 99876

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.88  E-value=1.4  Score=40.40  Aligned_cols=94  Identities=12%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++    .|.+.+.-..   .++.+.+....   +..+|
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~v~~~~---~~g~D  262 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT---DGGVD  262 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT---TSCBS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEeccccccccHHHHHHHHh---CCCCC
Confidence            56788899874 77888888876 45 89999999998887753    4654321111   12322222222   12345


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      .++-...              ....++.+.+.|+++ |++.+
T Consensus       263 ~vid~~g--------------~~~~~~~~~~~l~~~~G~iv~  290 (373)
T 2fzw_A          263 YSFECIG--------------NVKVMRAALEACHKGWGVSVV  290 (373)
T ss_dssp             EEEECSC--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCC--------------cHHHHHHHHHhhccCCcEEEE
Confidence            4432211              125678888999999 99876

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=88.81  E-value=3  Score=37.65  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=+|+|+ |.+++.+|+..-..+|+++|.+++.++.++    +.+.+.+ ..-..|..+.+....  ....++.++
T Consensus       164 g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t--~g~g~d~~~  237 (348)
T 4eez_A          164 GDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKIT--GGLGVQSAI  237 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHT--TSSCEEEEE
T ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhc--CCCCceEEE
Confidence            56788789985 456667777666789999999998877664    3454432 222234433322222  122234333


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ...              .....+....+.|+++|++.+
T Consensus       238 ~~~--------------~~~~~~~~~~~~l~~~G~~v~  261 (348)
T 4eez_A          238 VCA--------------VARIAFEQAVASLKPMGKMVA  261 (348)
T ss_dssp             ECC--------------SCHHHHHHHHHTEEEEEEEEE
T ss_pred             Eec--------------cCcchhheeheeecCCceEEE
Confidence            221              113567778889999999877

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=88.49  E-value=1  Score=40.27  Aligned_cols=57  Identities=14%  Similarity=0.060  Sum_probs=43.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      ..+++|+-||.|.+++.+.+..-+.. +.++|+++.+++.-+.|.     .+..++.+|+.+.
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i   73 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSV   73 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGC
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHc
Confidence            56899999999999999887742333 589999999988877663     2345778888763

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=88.47  E-value=1.3  Score=40.81  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=+|+| .|.+++.+|+...-.+|+++|.+++.++.|+    +.|.+.+.-..   .|+.+.+....   +..+|.
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~~---~gg~D~  266 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVNEFVNPKDHDKPIQEVIVDLT---DGGVDY  266 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCCEEECGGGCSSCHHHHHHHHT---TSCBSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCcEEEccccCchhHHHHHHHhc---CCCCCE
Confidence            5678888987 4888888888763338999999999888774    34554321111   22222222222   223454


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      ++-....              ...++.+.+.|++| |++.+
T Consensus       267 vid~~g~--------------~~~~~~~~~~l~~g~G~iv~  293 (378)
T 3uko_A          267 SFECIGN--------------VSVMRAALECCHKGWGTSVI  293 (378)
T ss_dssp             EEECSCC--------------HHHHHHHHHTBCTTTCEEEE
T ss_pred             EEECCCC--------------HHHHHHHHHHhhccCCEEEE
Confidence            4322111              25678888999997 99887

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=88.08  E-value=1.3  Score=40.27  Aligned_cols=93  Identities=15%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEec---chhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~---d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|+| .|..++.+|+.. ++ +|+++|.+++.++.+++    .|.+.+  +..   |+.+.+....  ....+|
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~--~~~~~~~~~~~v~~~~--~g~g~D  238 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGADYV--INPFEEDVVKEVMDIT--DGNGVD  238 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCSEE--ECTTTSCHHHHHHHHT--TTSCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEE--ECCCCcCHHHHHHHHc--CCCCCC
Confidence            5679999986 377888888876 56 89999999988877753    454322  221   2222222211  122355


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-....              ...++.+.+.|+++|++.+
T Consensus       239 ~vid~~g~--------------~~~~~~~~~~l~~~G~iv~  265 (348)
T 2d8a_A          239 VFLEFSGA--------------PKALEQGLQAVTPAGRVSL  265 (348)
T ss_dssp             EEEECSCC--------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCC--------------HHHHHHHHHHHhcCCEEEE
Confidence            54332111              2566777888999998876

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=87.86  E-value=2.8  Score=37.68  Aligned_cols=92  Identities=11%  Similarity=0.115  Sum_probs=56.6

Q ss_pred             CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d  221 (336)
                      +.++|-.|+  |.|..+..+++.. +++++++|.+++.++.++    +.+...+ +-.   .++.+.+....   ...+|
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~~~-~d~~~~~~~~~~~~~~~---~~~~d  216 (333)
T 1v3u_A          146 GETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFDAA-FNYKTVNSLEEALKKAS---PDGYD  216 (333)
T ss_dssp             SCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSEE-EETTSCSCHHHHHHHHC---TTCEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----hcCCcEE-EecCCHHHHHHHHHHHh---CCCCe
Confidence            568999998  5666777777765 679999999998887763    2343321 211   22222233322   13456


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-...               ...++.+.+.|+++|++.+
T Consensus       217 ~vi~~~g---------------~~~~~~~~~~l~~~G~~v~  242 (333)
T 1v3u_A          217 CYFDNVG---------------GEFLNTVLSQMKDFGKIAI  242 (333)
T ss_dssp             EEEESSC---------------HHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECCC---------------hHHHHHHHHHHhcCCEEEE
Confidence            5433211               1346778899999999887

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=87.72  E-value=1.6  Score=39.70  Aligned_cols=94  Identities=12%  Similarity=0.098  Sum_probs=58.2

Q ss_pred             CCeEEEE-ecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDI-GSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDi-GcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=+ |+| .|..++.+|+.. +++|++++.+++.++.+++    .|.+.+.-...|+.+.+...   ....+|.++
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~---~~~g~Dvv~  222 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADIVLNHKESLLNQFKTQ---GIELVDYVF  222 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSEEECTTSCHHHHHHHH---TCCCEEEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEEEECCccHHHHHHHh---CCCCccEEE
Confidence            5678888 454 577888888876 6799999999998887764    45443221122332222222   123356543


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -...              ....++.+.+.|+++|++..
T Consensus       223 d~~g--------------~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          223 CTFN--------------TDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             ESSC--------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCC--------------chHHHHHHHHHhccCCEEEE
Confidence            2211              13566788899999999865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=87.45  E-value=2.4  Score=38.28  Aligned_cols=91  Identities=14%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=+|+| .|..++.+|+.. +++++++|.+++.++.++    +.|.+.+  +.   .|+.+.+....    ..+|.
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~~--~d~~~~~~~~~~~~~~----~~~d~  233 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK----ELGADLV--VNPLKEDAAKFMKEKV----GGVHA  233 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTCSEE--ECTTTSCHHHHHHHHH----SSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HCCCCEE--ecCCCccHHHHHHHHh----CCCCE
Confidence            5689999986 477888888876 679999999999888774    3454422  21   12222222211    13454


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-....              ...++.+.+.|+++|++.+
T Consensus       234 vid~~g~--------------~~~~~~~~~~l~~~G~~v~  259 (339)
T 1rjw_A          234 AVVTAVS--------------KPAFQSAYNSIRRGGACVL  259 (339)
T ss_dssp             EEESSCC--------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCC--------------HHHHHHHHHHhhcCCEEEE
Confidence            4322111              2566777889999998876

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=87.21  E-value=2  Score=38.81  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec---chhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~---d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||-.|+  |.|..++.+|+.. +++++++|.+++.++.+++   +.|...+ +-..   ++.+.+....   +..+|
T Consensus       156 g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~~~-~d~~~~~~~~~~~~~~~---~~~~d  227 (345)
T 2j3h_A          156 GETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFDDA-FNYKEESDLTAALKRCF---PNGID  227 (345)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCSEE-EETTSCSCSHHHHHHHC---TTCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCceE-EecCCHHHHHHHHHHHh---CCCCc
Confidence            578999997  5777888888776 6799999999988877653   2344322 1111   2223333322   23456


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-...               ...++.+.+.|+++|++.+
T Consensus       228 ~vi~~~g---------------~~~~~~~~~~l~~~G~~v~  253 (345)
T 2j3h_A          228 IYFENVG---------------GKMLDAVLVNMNMHGRIAV  253 (345)
T ss_dssp             EEEESSC---------------HHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECCC---------------HHHHHHHHHHHhcCCEEEE
Confidence            5433210               1466788889999999877

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=86.41  E-value=2.2  Score=38.65  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             CCeEEEEecc--ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec--chhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG--sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~--d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||-+|+|  .|..++.+++...+++++++|.+++.++.+++    .+.+.+ +-..  +..+.+.....  ...+|.
T Consensus       171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~~~~~~--~~~~d~  243 (347)
T 1jvb_A          171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADYV-INASMQDPLAEIRRITE--SKGVDA  243 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSEE-EETTTSCHHHHHHHHTT--TSCEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCEE-ecCCCccHHHHHHHHhc--CCCceE
Confidence            5689999987  45566777776546799999999988887743    354322 2111  22111222221  024565


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-....              ...++.+.+.|+++|++.+
T Consensus       244 vi~~~g~--------------~~~~~~~~~~l~~~G~iv~  269 (347)
T 1jvb_A          244 VIDLNNS--------------EKTLSVYPKALAKQGKYVM  269 (347)
T ss_dssp             EEESCCC--------------HHHHTTGGGGEEEEEEEEE
T ss_pred             EEECCCC--------------HHHHHHHHHHHhcCCEEEE
Confidence            4332111              2466777889999998877

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=86.27  E-value=1.4  Score=39.91  Aligned_cols=93  Identities=9%  Similarity=0.003  Sum_probs=56.3

Q ss_pred             CCeEEEEecc--ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe--cchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG--sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~--~d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=+|+|  .|..++.+|+.. +++|+++|.+++.++.+++    .|.+.+ +-.  .|+.+.+....  ....+|.
T Consensus       145 g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~~~-~~~~~~~~~~~~~~~~--~~~g~Dv  216 (340)
T 3gms_A          145 NDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAAYV-IDTSTAPLYETVMELT--NGIGADA  216 (340)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSEE-EETTTSCHHHHHHHHT--TTSCEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCcEE-EeCCcccHHHHHHHHh--CCCCCcE
Confidence            5789999986  577888888876 6799999999988887764    454422 211  22222222222  1224565


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-....               ..+....+.|+++|++.+
T Consensus       217 vid~~g~---------------~~~~~~~~~l~~~G~iv~  241 (340)
T 3gms_A          217 AIDSIGG---------------PDGNELAFSLRPNGHFLT  241 (340)
T ss_dssp             EEESSCH---------------HHHHHHHHTEEEEEEEEE
T ss_pred             EEECCCC---------------hhHHHHHHHhcCCCEEEE
Confidence            4322111               122334479999999887

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=86.24  E-value=2.1  Score=38.70  Aligned_cols=93  Identities=10%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec---chhHHHHhhhcCCCCeE
Q 019743          146 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKL  220 (336)
Q Consensus       146 ~~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~---d~~~~~d~ivsnpp~~~  220 (336)
                      .+.+||-+|+  |.|..++.+|+.. +++++++|.+++.++.+++    .+.+.+  +..   ++.+.+....  ....+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~~--~d~~~~~~~~~~~~~~--~~~~~  236 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADET--VNYTHPDWPKEVRRLT--GGKGA  236 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEE--EETTSTTHHHHHHHHT--TTTCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCEE--EcCCcccHHHHHHHHh--CCCCc
Confidence            3578999998  5788888888876 6799999999998887753    354422  221   2222222222  12235


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      |.++-... +              ..++.+.+.|+++|++.+
T Consensus       237 d~vi~~~g-~--------------~~~~~~~~~l~~~G~~v~  263 (343)
T 2eih_A          237 DKVVDHTG-A--------------LYFEGVIKATANGGRIAI  263 (343)
T ss_dssp             EEEEESSC-S--------------SSHHHHHHHEEEEEEEEE
T ss_pred             eEEEECCC-H--------------HHHHHHHHhhccCCEEEE
Confidence            65443322 1              234666778999998876

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=86.09  E-value=2.1  Score=38.85  Aligned_cols=94  Identities=11%  Similarity=0.126  Sum_probs=58.4

Q ss_pred             CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=+|+  |.|..++.+|+.. ++++++++.+++.++.+++    .|.+.+.-...++.+.+....  ....+|.++
T Consensus       160 g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~~~~~~~v~~~~--~~~g~Dvvi  232 (342)
T 4eye_A          160 GETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADIVLPLEEGWAKAVREAT--GGAGVDMVV  232 (342)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEEEESSTTHHHHHHHHT--TTSCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEEecCchhHHHHHHHHh--CCCCceEEE
Confidence            578999997  5688888888876 6799999999988877754    454433211223322222222  222456543


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -....               ..+..+.+.|+++|++.+
T Consensus       233 d~~g~---------------~~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          233 DPIGG---------------PAFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             ESCC-----------------CHHHHHHTEEEEEEEEE
T ss_pred             ECCch---------------hHHHHHHHhhcCCCEEEE
Confidence            32111               235667789999999887

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=86.08  E-value=3.3  Score=37.20  Aligned_cols=94  Identities=12%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe--cchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~--~d~~~~~d~ivsnpp~~~d  221 (336)
                      .+.+||=+|+  |.|..++.+|+.. +++|+++|.+++.++.+.+   +.|.+.+ +-.  .|+.+.+....   +..+|
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~~~~~---~~~~d  220 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVE---ELGFDGA-IDYKNEDLAAGLKREC---PKGID  220 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TTCCSEE-EETTTSCHHHHHHHHC---TTCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCCEE-EECCCHHHHHHHHHhc---CCCce
Confidence            3578999998  5677888888876 6799999999988777632   2344322 111  12222222222   23456


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-..               -...+..+.+.|+++|++.+
T Consensus       221 ~vi~~~---------------g~~~~~~~~~~l~~~G~iv~  246 (336)
T 4b7c_A          221 VFFDNV---------------GGEILDTVLTRIAFKARIVL  246 (336)
T ss_dssp             EEEESS---------------CHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECC---------------CcchHHHHHHHHhhCCEEEE
Confidence            543221               01467788899999999887

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=85.19  E-value=5.8  Score=30.43  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=35.4

Q ss_pred             CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      .+++=+|||  .++..+++..  .+.+|+++|.+++.++.+++    .   .+.++.+|..+
T Consensus         7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~   59 (141)
T 3llv_A            7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTD   59 (141)
T ss_dssp             CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTC
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCC
Confidence            467778874  4666666542  36789999999988776643    2   35678888765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=85.16  E-value=3.2  Score=38.95  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=57.5

Q ss_pred             CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEEEE
Q 019743          148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILV  223 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i  223 (336)
                      ..|+=+|+  |.++..+++..  .+..|+++|.+++.++.+++    .+   +.++.+|+.+.  +...   .-...+.+
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g---~~vi~GDat~~~~L~~a---gi~~A~~v   72 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG---MKVFYGDATRMDLLESA---GAAKAEVL   72 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT---CCCEESCTTCHHHHHHT---TTTTCSEE
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC---CeEEEcCCCCHHHHHhc---CCCccCEE
Confidence            45666666  55666655532  36789999999999887753    33   45788998653  2221   11223444


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  268 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~  268 (336)
                      ++..+++.           ....+....+.+.|...++.......
T Consensus        73 iv~~~~~~-----------~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           73 INAIDDPQ-----------TNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             EECCSSHH-----------HHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             EECCCChH-----------HHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            55444431           11334455566778878877654433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=84.06  E-value=8.9  Score=30.87  Aligned_cols=111  Identities=19%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhC--C-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR--K-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~--p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d  221 (336)
                      +..|+=+||  |.++..+++..  . +.+|+++|.+++.++.++    ..+   +..+.+|..+.  +... .+ -...|
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~g---~~~~~gd~~~~~~l~~~-~~-~~~ad  107 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----SEG---RNVISGDATDPDFWERI-LD-TGHVK  107 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HTT---CCEEECCTTCHHHHHTB-CS-CCCCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HCC---CCEEEcCCCCHHHHHhc-cC-CCCCC
Confidence            346777776  55666555542  2 568999999998776653    233   44566776432  2211 00 12245


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      .+++..+++.          ....++ ...+.+.|++.++..+......    +.+.+.|-.
T Consensus       108 ~vi~~~~~~~----------~~~~~~-~~~~~~~~~~~ii~~~~~~~~~----~~l~~~G~~  154 (183)
T 3c85_A          108 LVLLAMPHHQ----------GNQTAL-EQLQRRNYKGQIAAIAEYPDQL----EGLLESGVD  154 (183)
T ss_dssp             EEEECCSSHH----------HHHHHH-HHHHHTTCCSEEEEEESSHHHH----HHHHHHTCS
T ss_pred             EEEEeCCChH----------HHHHHH-HHHHHHCCCCEEEEEECCHHHH----HHHHHcCCC
Confidence            5555444321          111222 3445667788888877654433    244555654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=83.84  E-value=1.3  Score=41.21  Aligned_cols=54  Identities=20%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CCeEEEEeccccHHHHHHHHh---C----CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARK---R----KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA  202 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~---~----p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~  202 (336)
                      ...|+|+|.|+|.++..+.+.   .    ...+++.||+|+...+.=++++...  .++.+..
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~~  141 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWHD  141 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEES
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEeC
Confidence            346999999999998877653   2    3458999999998776544444322  2466653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=83.61  E-value=1.4  Score=40.27  Aligned_cols=41  Identities=10%  Similarity=-0.005  Sum_probs=33.3

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      +.+||-+|+| .|.+++.+|+.. +++|+++|.+++.++.+++
T Consensus       180 g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          180 GKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            5789999986 377888888875 6789999999988887754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=83.11  E-value=2.1  Score=39.03  Aligned_cols=90  Identities=11%  Similarity=0.039  Sum_probs=55.3

Q ss_pred             CeEEEEecc-ccHHH-HHHH-HhCCCCe-EEEEecChH---HHHHHHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCe
Q 019743          148 PLVVDIGSG-NGLFL-LGMA-RKRKDLN-FLGLEVNGK---LVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGK  219 (336)
Q Consensus       148 ~~vLDiGcG-sG~~~-~~la-~~~p~~~-v~giDis~~---~l~~a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~  219 (336)
                      .+||=+|+| .|.++ +.+| +.. +++ |+++|.+++   .++.++    +.|.+.+ -. ..|+.+ +..+ .  . .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~~v-~~~~~~~~~-i~~~-~--g-g  242 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIE----ELDATYV-DSRQTPVED-VPDV-Y--E-Q  242 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHH----HTTCEEE-ETTTSCGGG-HHHH-S--C-C
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHH----HcCCccc-CCCccCHHH-HHHh-C--C-C
Confidence            689999985 47777 8888 765 565 999999987   777764    3454433 11 112222 2222 1  1 3


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +|.++-....              ...++.+.+.|+++|++.+
T Consensus       243 ~Dvvid~~g~--------------~~~~~~~~~~l~~~G~iv~  271 (357)
T 2b5w_A          243 MDFIYEATGF--------------PKHAIQSVQALAPNGVGAL  271 (357)
T ss_dssp             EEEEEECSCC--------------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCCC--------------hHHHHHHHHHHhcCCEEEE
Confidence            5544322111              2466788889999999887

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=82.91  E-value=7.5  Score=35.38  Aligned_cols=91  Identities=14%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             CCeEEEEe--ccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec---chhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiG--cGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~---d~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+|  .|.|..++.+|+.. +++|++++.+++.++.+++    .|.+.+  +..   ++.+.+....   +..+|
T Consensus       164 g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~--~~~~~~~~~~~~~~~~---~~g~D  233 (362)
T 2c0c_A          164 GKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCDRP--INYKTEPVGTVLKQEY---PEGVD  233 (362)
T ss_dssp             TCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEE--EETTTSCHHHHHHHHC---TTCEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCcEE--EecCChhHHHHHHHhc---CCCCC
Confidence            56899999  45788888898876 6799999999988877753    454422  221   2222222221   23355


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-...               ...++.+.+.|+++|++.+
T Consensus       234 ~vid~~g---------------~~~~~~~~~~l~~~G~iv~  259 (362)
T 2c0c_A          234 VVYESVG---------------GAMFDLAVDALATKGRLIV  259 (362)
T ss_dssp             EEEECSC---------------THHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC---------------HHHHHHHHHHHhcCCEEEE
Confidence            5432211               1456777889999999887

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=82.65  E-value=6.1  Score=35.51  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-EecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=.|+| .|.+++.+|+..-...++++|.+++.++.|+    +.|.+.+.- -..|..+....+ .+.. .+|.++
T Consensus       161 g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~~~i~~~~~~~~~~~~~~-~~~~-g~d~v~  234 (346)
T 4a2c_A          161 NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAMQTFNSSEMSAPQMQSVL-RELR-FNQLIL  234 (346)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSEEEETTTSCHHHHHHHH-GGGC-SSEEEE
T ss_pred             CCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCeEEEeCCCCCHHHHHHhh-cccC-Cccccc
Confidence            5678888987 4667788888875567899999999888775    456543211 112222222222 1111 123322


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -...              ....++.+.+.|+++|++.+
T Consensus       235 d~~G--------------~~~~~~~~~~~l~~~G~~v~  258 (346)
T 4a2c_A          235 ETAG--------------VPQTVELAVEIAGPHAQLAL  258 (346)
T ss_dssp             ECSC--------------SHHHHHHHHHHCCTTCEEEE
T ss_pred             cccc--------------ccchhhhhhheecCCeEEEE
Confidence            1111              13667888899999999988

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=81.06  E-value=4.4  Score=37.58  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      +.+||=+|+|. |.+++.+|+...-.+|+++|.+++.++.+++
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            56777789864 7788888888733399999999998888753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=81.01  E-value=7.6  Score=32.39  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhh-hcCCCCeEEEEEeeCCC
Q 019743          155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSI-VASYPGKLILVSIQCPN  229 (336)
Q Consensus       155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~i-vsnpp~~~d~i~~~~~d  229 (336)
                      ||.|.++..+|+..  .+..++.+|.+++.++...+.   .   ++.++.+|..+.  +... +.    ..+.+++..++
T Consensus         6 iG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~---~~~~i~gd~~~~~~l~~a~i~----~ad~vi~~~~~   75 (218)
T 3l4b_C            6 IGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L---KATIIHGDGSHKEILRDAEVS----KNDVVVILTPR   75 (218)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S---SSEEEESCTTSHHHHHHHTCC----TTCEEEECCSC
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c---CCeEEEcCCCCHHHHHhcCcc----cCCEEEEecCC
Confidence            34577777777652  367899999999877654322   2   356788888652  2221 21    22444444333


Q ss_pred             CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          230 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       230 p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      ..           ...++....+.+.+...++.....
T Consensus        76 d~-----------~n~~~~~~a~~~~~~~~iia~~~~  101 (218)
T 3l4b_C           76 DE-----------VNLFIAQLVMKDFGVKRVVSLVND  101 (218)
T ss_dssp             HH-----------HHHHHHHHHHHTSCCCEEEECCCS
T ss_pred             cH-----------HHHHHHHHHHHHcCCCeEEEEEeC
Confidence            21           123444555556666776664433

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=80.88  E-value=4.1  Score=36.57  Aligned_cols=94  Identities=11%  Similarity=0.063  Sum_probs=57.2

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe--cchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~--~d~~~~~d~ivsnpp~~~d  221 (336)
                      .+.+||=+|+  |.|..++.+|+.. ++++++++.+++.++.+++    .|.+.+ +-.  .|+.+.+....  ....+|
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~~-~~~~~~~~~~~~~~~~--~~~g~D  219 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAEYL-INASKEDILRQVLKFT--NGKGVD  219 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEE-EETTTSCHHHHHHHHT--TTSCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE-EeCCCchHHHHHHHHh--CCCCce
Confidence            3578999994  5677888888876 6799999999998887643    454322 211  22222222222  123356


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++-...               ...++.+.+.|+++|++.+
T Consensus       220 ~vid~~g---------------~~~~~~~~~~l~~~G~iv~  245 (334)
T 3qwb_A          220 ASFDSVG---------------KDTFEISLAALKRKGVFVS  245 (334)
T ss_dssp             EEEECCG---------------GGGHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC---------------hHHHHHHHHHhccCCEEEE
Confidence            5432211               1345667789999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	9e-17
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	4e-14
d1phpa_	394	c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st	3e-10
d1vpea_	398	c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga	2e-07
d1ltka_	417	c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par	3e-06
d1qpga_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea	4e-06

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 75.7 bits (185), Expect = 9e-17
 Identities = 33/202 (16%), Positives = 82/202 (40%), Gaps = 13/202 (6%)

Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
               +   W+  + +   P+ +++G+G G F+ GMA++  D+N++G+E+   ++      
Sbjct: 14  NPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK 72

Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
           ++ S   N   +  +A +         PG++  V +   +P   +   + R+     ++ 
Sbjct: 73  VKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKK 129

Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
             +++   G +  ++D   +     + F EYG            T  +           +
Sbjct: 130 YEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLEGNI 180

Query: 310 RSDWEQHVIDRGAPMYRLMLSK 331
            +++E+     G P+YR  +  
Sbjct: 181 MTEYEEKFSALGQPIYRAEVEW 202

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 68.0 bits (165), Expect = 4e-14
 Identities = 33/196 (16%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
                 W   + +   P+ V++GSG G F+ GMA++  D+N++G+++   ++++  D + 
Sbjct: 18  LEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 76

Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
             G+ N   +  + +           G++  + +   +P   +   + R+  ++ ++   
Sbjct: 77  EVGVPNIKLLWVDGSDLTDYF---EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFK 133

Query: 252 DLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRS 311
            +L  +G++  ++D   +       F +YG     +  D             +    V +
Sbjct: 134 RILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEGNVMT 184

Query: 312 DWEQHVIDRGAPMYRL 327
           ++EQ   ++G  +YR+
Sbjct: 185 EYEQKFSNKGQVIYRV 200

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245

Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D     +  +    ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305

Query: 125 TITKCKAF 132
            I + K  
Sbjct: 306 VIRESKLV 313

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 2/127 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +       +  +    GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304

Query: 124 STITKCK 130
             ++  K
Sbjct: 305 QKLSDAK 311

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++        + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265

Query: 65  AASDLIQFARDKHITILYPKDFWCTK--IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325

Query: 123 TSTITKCKAF 132
              I   K  
Sbjct: 326 KDVILTSKTV 335

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F          +   + +K   +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +  
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321

Query: 123 TSTITKCK 130
            +T+ K K
Sbjct: 322 AATVAKAK 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	100.0
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	100.0
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	100.0
d1v6sa_	390	Phosphoglycerate kinase {Thermus thermophilus [Tax	99.97
d1phpa_	394	Phosphoglycerate kinase {Bacillus stearothermophil	99.97
d16pka_	415	Phosphoglycerate kinase {Trypanosoma brucei [TaxId	99.96
d1vpea_	398	Phosphoglycerate kinase {Thermotoga maritima [TaxI	99.96
d1ltka_	417	Phosphoglycerate kinase {Malaria parasite (Plasmod	99.96
d1qpga_	415	Phosphoglycerate kinase {Baker's yeast (Saccharomy	99.95
d1hdia_	413	Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId:	99.95
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.94
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.85
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.74
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.72
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.71
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.69
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.68
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.64
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.62
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.62
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.61
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.6
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.56
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.54
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.54
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.54
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.53
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.51
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.49
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.46
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.46
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.45
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.44
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.43
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.43
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.42
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.42
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.4
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.39
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.39
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.38
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.38
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.38
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.37
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.36
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.35
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.35
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.31
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.3
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.29
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.28
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.28
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.27
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.26
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.26
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.25
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.23
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.23
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.2
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.15
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.14
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.13
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.13
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.13
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.12
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.06
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.91
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.9
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.9
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.85
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.81
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.71
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.69
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.64
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.64
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.62
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.62
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.6
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.6
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.59
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.47
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.45
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.43
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.4
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.37
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.34
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.32
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.32
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.3
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.29
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.29
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.09
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.02
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.0
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.73
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.45
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.27
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.04
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.02
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.88
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.85
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.77
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.76
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.68
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.27
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.17
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.72
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.53
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.16
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.87
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.43
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.3
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.29
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.24
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.2
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	90.78
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.29
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.83
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	88.57
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.29
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.79
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	85.24
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.35
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.22
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.15
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	84.1
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	83.79
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	83.53
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	82.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	82.21
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.43

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.2e-33  Score=243.67  Aligned_cols=185  Identities=18%  Similarity=0.375  Sum_probs=165.7

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      ...|+..|++ +++.|||||||+|.+++.+|+.+|+.+++|+|+++.++..|.+++++.+++|+.++++|+....+ .+ 
T Consensus        19 ~~~w~~~F~~-~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~-~~-   95 (204)
T d2fcaa1          19 KGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD-VF-   95 (204)
T ss_dssp             TTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH-HC-
T ss_pred             HhHHHHHcCC-CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc-cc-
Confidence            4568888877 47899999999999999999999999999999999999999999999999999999999987654 34 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecccccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  294 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~  294 (336)
                       |+.+++.+++.||+||++.+|+++|++.+.+++.+.++|||||.|++.||+..|++++.+.+.++++.......|.|  
T Consensus        96 -~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~~~d~~--  172 (204)
T d2fcaa1          96 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLH--  172 (204)
T ss_dssp             -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG--
T ss_pred             -CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccccCChhhc--
Confidence             68889999999999999999999999999999999999999999999999999999999999999987766666654  


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 019743          295 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  332 (336)
Q Consensus       295 ~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~  332 (336)
                             ....+..+.|+||+++.++|.+||++.|++.
T Consensus       173 -------~~~~~~~~~T~yE~k~~~~G~~iy~~~~~~~  203 (204)
T d2fcaa1         173 -------NSNLEGNIMTEYEEKFSALGQPIYRAEVEWR  203 (204)
T ss_dssp             -------GSSCTTCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred             -------ccCCCCCCCCHHHHHHHHcCCCeEEEEEEEe
Confidence                   1223446789999999999999999999874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=4.6e-33  Score=239.91  Aligned_cols=183  Identities=18%  Similarity=0.390  Sum_probs=162.6

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743          135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      ...|+..|++ +++.|||||||+|.+++.+|+.+|+.+++|+|+++.++..|.+++.+++++|++++++|+..+.+ .+ 
T Consensus        21 ~~~w~~~f~~-~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~-~~-   97 (204)
T d1yzha1          21 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-   97 (204)
T ss_dssp             TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-
T ss_pred             hccHHHHcCC-CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh-hc-
Confidence            3467777876 47899999999999999999999999999999999999999999999999999999999977543 34 


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecccccc
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  294 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~  294 (336)
                       |+.+++.++++|||||++.+|+++|++.+.+++.+.++|||||.+++.||+.+|++++.+.+...++.......|.+  
T Consensus        98 -~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~~~~~--  174 (204)
T d1yzha1          98 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLH--  174 (204)
T ss_dssp             -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG--
T ss_pred             -cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccccccccc--
Confidence             67788999999999999999999999999999999999999999999999999999999999998887665565543  


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEE
Q 019743          295 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLS  330 (336)
Q Consensus       295 ~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~  330 (336)
                             ..+....+.|+||+++.+.|++||++.|+
T Consensus       175 -------~~~~~~~~~T~yE~k~~~~G~~Iy~l~~~  203 (204)
T d1yzha1         175 -------ASDFEGNVMTEYEQKFSNKGQVIYRVEAE  203 (204)
T ss_dssp             -------GSCCCCCCCCHHHHHTGGGCCCCEEEEEE
T ss_pred             -------ccccCCCCCCHHHHHHHHcCCCeEEEEEE
Confidence                   22334567899999999999999999987

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-33  Score=252.78  Aligned_cols=206  Identities=17%  Similarity=0.161  Sum_probs=168.6

Q ss_pred             cccCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcc
Q 019743           57 LVEKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFD  135 (336)
Q Consensus        57 ~~~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~  135 (336)
                      .+.++..+..++++.+. ..|+    |++|++|+. |+|.+|.|.+.++||        +|+|+.+++.++....     
T Consensus        45 ~~~~~~~~~~~~~~~rr-~~g~----PlqYI~G~~~F~~~~~~v~~~VlIP--------RpeTE~lv~~~l~~~~-----  106 (274)
T d2b3ta1          45 QLTDEQCQQLDALLTRR-RDGE----PIAHLTGVREFWSLPLFVSPATLIP--------RPDTECLVEQALARLP-----  106 (274)
T ss_dssp             BCCHHHHHHHHHHHHHH-HTTC----CHHHHSCEEEETTEEEECCTTSCCC--------CTTHHHHHHHHHHHSC-----
T ss_pred             CCCHHHHHHHHHHHHHH-hcCc----ChhhhcCcEEEeeeEEEEecccccc--------ccchhhhhhhHhhhhc-----
Confidence            45566678888888884 4465    999999998 999999999999999        5999999998887543     


Q ss_pred             cccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHH
Q 019743          136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFR  210 (336)
Q Consensus       136 i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d  210 (336)
                               .++.+|||+|||||++++++|+..|+++++|+|+|+.|++.|++|+++++++|++|+++|+++     .||
T Consensus       107 ---------~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fD  177 (274)
T d2b3ta1         107 ---------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA  177 (274)
T ss_dssp             ---------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred             ---------ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCcee
Confidence                     135689999999999999999999999999999999999999999999999899999999975     489


Q ss_pred             hhhcCCCCeEEEEE-eeC----CCCCCCc-chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743          211 SIVASYPGKLILVS-IQC----PNPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       211 ~ivsnpp~~~d~i~-~~~----~dp~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~  284 (336)
                      .|+|||||...... ...    -+|.... .......+++++++++.++|+|||.++++++. .+.+.+.+++.++||..
T Consensus       178 lIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-~q~~~v~~~l~~~gf~~  256 (274)
T d2b3ta1         178 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVRQAFILAGYHD  256 (274)
T ss_dssp             EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHHHHHHHTTCTT
T ss_pred             EEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHHHHHHHCCCCe
Confidence            99999999642110 000    1111110 11123356789999999999999999999986 55889999999999998


Q ss_pred             eeeecc
Q 019743          285 LVLVQD  290 (336)
Q Consensus       285 ~~~~~d  290 (336)
                      +++.+|
T Consensus       257 i~~~kD  262 (274)
T d2b3ta1         257 VETCRD  262 (274)
T ss_dssp             CCEEEC
T ss_pred             EEEEEC
Confidence            888888

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.3e-30  Score=242.55  Aligned_cols=167  Identities=26%  Similarity=0.430  Sum_probs=140.6

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|+|||||+|||++|++++++||++++||+||||||+|+|++||+++++++.++.++++++.+.+++.+|.
T Consensus       179 l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~~~~~~~~~~a~~~~~~i~  258 (390)
T d1v6sa_         179 LKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVY  258 (390)
T ss_dssp             TSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             HhhccCceEEEEecccccchHHHHHHHHHhcceeeecccHHHHHHHHcCCccCcchhhhhhhhhhHhHHHhhhhhccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+.+... ..+....+.+...||.+|+++|+||+|.+.|.+.+..++    ||+||||++--+.+..   --||=.+
T Consensus       259 lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~ak----tI~WNGPmGvfE~~~F---~~GT~~i  331 (390)
T d1v6sa_         259 LPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGAR----TVFWNGPMGVFEVPPF---DEGTLAV  331 (390)
T ss_dssp             CCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCS----EEEEESCSSCTTSTTT---THHHHHH
T ss_pred             cccceeecccccCCccccccchhhhhhhhhhhhhhhhhhHHHHHHhcccc----eEEEEccccccccCch---hHHHHHH
Confidence            9999999866 334345555788899999999999999999999999999    9999999864332311   3355555


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +.++|.......++|
T Consensus       332 ~~aia~~~~a~sIiG  346 (390)
T d1v6sa_         332 GQAIAALEGAFTVVG  346 (390)
T ss_dssp             HHHHHTCSSCEEEEE
T ss_pred             HHHHHhcCCCEEEEe
Confidence            555654321234554

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=6.1e-31  Score=245.15  Aligned_cols=167  Identities=23%  Similarity=0.426  Sum_probs=141.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|+||||++|||++|++++++||++++||+|||+||+|+|++||+++.+++..+.|+++++.+++++++|.
T Consensus       182 l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~  261 (394)
T d1phpa_         182 LSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFY  261 (394)
T ss_dssp             HHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCCeEEEEecCccccHHHHHHHHHhhcCeEEEcchHHHHHHHHcCCccCcccccchhHHHHHHHHHHHhhcCCccc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++...+ ...+..+.+...||.+++++|+||+|.+.|.+.+..++    ||+||||++--+.+.   .--||=.+
T Consensus       262 lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~ak----tI~WNGPmG~fE~~~---F~~GT~~l  334 (394)
T d1phpa_         262 MPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESK----LVVWNGPMGVFEMDA---FAHGTKAI  334 (394)
T ss_dssp             CCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCS----EEEEESCSSCTTSGG---GCHHHHHH
T ss_pred             CCccchhhccccccccceEEEhhhccCCccccccCchHHHHHHHHHhhhc----eEEEecceeeeeccc---hhHHHHHH
Confidence            99999998763 33456666788899999999999999999999999999    999999986432221   23355555


Q ss_pred             HHHHHHhCCCCeEEE
Q 019743          161 LLGMARKRKDLNFLG  175 (336)
Q Consensus       161 ~~~la~~~p~~~v~g  175 (336)
                      +..+++......++|
T Consensus       335 ~~~ia~~~~a~sivG  349 (394)
T d1phpa_         335 AEALAEALDTYSVIG  349 (394)
T ss_dssp             HHHHHHCTTCEEEEC
T ss_pred             HHHHHhcCCCeEEEe
Confidence            566665422345554

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=6.3e-30  Score=240.26  Aligned_cols=158  Identities=25%  Similarity=0.428  Sum_probs=137.9

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~   81 (336)
                      +++|+||+++|+||||++|||.+|+|++++||++++||+|||+||+|+|++||.++++++.++.++++++.+++++++|.
T Consensus       200 l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~antfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~  279 (415)
T d16pka_         200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI  279 (415)
T ss_dssp             HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             HhCCCcceEEEEeccccccHHHHHHHHHhhcceeeecchHHHHHHHHcCCcccccchhhhhhhhhhhhhhhhhcceeEEe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      +|+|+++...+ ......+.+...||.+++++||||+|.+.|.+.++.++    ||+||||++--+.+   ..-.||=.+
T Consensus       280 lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~Ak----tI~wNGP~GvfE~~---~F~~GT~~l  352 (415)
T d16pka_         280 LPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCK----SAIWNGPMGVFEMV---PYSKGTFAI  352 (415)
T ss_dssp             CCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHHHH
T ss_pred             eccceeeccccccccccccccccccccchHHHHHHHHhhhHHhHhhhhhc----eEEEecceeeeecc---chhHHHHHH
Confidence            99999998663 23334555678899999999999999999999999999    99999998653222   134566666


Q ss_pred             HHHHHH
Q 019743          161 LLGMAR  166 (336)
Q Consensus       161 ~~~la~  166 (336)
                      +.++|+
T Consensus       353 ~~~ia~  358 (415)
T d16pka_         353 AKAMGR  358 (415)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666764

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.8e-29  Score=234.15  Aligned_cols=157  Identities=27%  Similarity=0.476  Sum_probs=134.3

Q ss_pred             CCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEec
Q 019743            3 KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILY   82 (336)
Q Consensus         3 ~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~~   82 (336)
                      ++|+||+++|+||||++|||.+|++++++||++++||+|||+||+|+|+++|++++|++.++.++++++.+++++++|.+
T Consensus       182 ~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~~~~~~~~i~~~a~~~~~~i~l  261 (398)
T d1vpea_         182 YNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVL  261 (398)
T ss_dssp             HCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEEC
T ss_pred             hcccCceEEEeecCccccHHHHHHHHHHhcceeeecchHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHhhhcCCcccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeccC--CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743           83 PKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF  160 (336)
Q Consensus        83 Pvd~~~~~~~--~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~  160 (336)
                      |+|+.+...|  .+....+.....||.+++++|+||+|.+.|.+.++.++    ||+||||.+--+.+   ..-.||=.+
T Consensus       262 P~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~ak----tI~WNGP~G~fE~~---~F~~GT~~l  334 (398)
T d1vpea_         262 PVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAK----TVVWNGPMGVFEID---DFAEGTKQV  334 (398)
T ss_dssp             CSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHHHH
T ss_pred             chheeecccccccccceeeccccCCCCcceeeccccchHHHHHHHhccCc----EEEEEccccccccc---chhHHHHHH
Confidence            9999998664  23434443345699999999999999999999999999    99999998653222   123344445


Q ss_pred             HHHHHH
Q 019743          161 LLGMAR  166 (336)
Q Consensus       161 ~~~la~  166 (336)
                      +..+++
T Consensus       335 ~~~ia~  340 (398)
T d1vpea_         335 ALAIAA  340 (398)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555664

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=3.4e-29  Score=235.11  Aligned_cols=166  Identities=21%  Similarity=0.396  Sum_probs=138.7

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHH-HcCCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMH-ALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~-a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|++|+++|+||||++|||++|++++++||.+++||+|+|+||+ |+|+++|.++++++.++.++++++.+++++++|
T Consensus       202 l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i  281 (417)
T d1ltka_         202 LENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQI  281 (417)
T ss_dssp             HTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEE
T ss_pred             HhccccCceEEEecCCccchHHHHHHHHhhhceeeeehhhHHHHHHhccCCccCcccchhhHHHHHHHHHHHHHhcCCce
Confidence            4689999999999999999999999999999999999999999998 689999999999999999999999999999999


Q ss_pred             eccceeeeeccC--CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~--~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++...+  ......+.+...||.+++++||||+|.+.|.+.++.++    ||+||||.+--+.+.   ...||=
T Consensus       282 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~ak----tI~WNGP~GvfE~~~---F~~GT~  354 (417)
T d1ltka_         282 FLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSK----TVIWNGPQGVFEMPN---FAKGSI  354 (417)
T ss_dssp             ECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHTCS----EEEEESCSSCTTSGG---GCHHHH
T ss_pred             eeccceeeecccccCcccccccccccCCccceeeeccchhhhHHHHHhccCC----EEEEECCcccccccc---hhHHHH
Confidence            999999997652  23334455677799999999999999999999999999    999999986533231   234554


Q ss_pred             HHHHHHHHh--CCCCeEE
Q 019743          159 LFLLGMARK--RKDLNFL  174 (336)
Q Consensus       159 ~~~~~la~~--~p~~~v~  174 (336)
                      .++..+++.  .+...++
T Consensus       355 ~l~~~i~~~t~~~~~siv  372 (417)
T d1ltka_         355 ECLNLVVEVTKKGAITIV  372 (417)
T ss_dssp             HHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhhCCCEEEE
Confidence            555555542  2334455

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.4e-29  Score=233.38  Aligned_cols=159  Identities=23%  Similarity=0.428  Sum_probs=136.3

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHH-HcCCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMH-ALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~-a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|+||||++|||++|++++++||++++||+|+|+||+ +.|+++|+++++++.++.++++++.+++++++|
T Consensus       198 l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mantflk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i  277 (415)
T d1qpga_         198 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  277 (415)
T ss_dssp             HSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCeEEEEecCccccHHHHHHHHHhhcceEEeechhhHHHHHhccCCcccccccccccchhhhHHHHHHHhcCCeE
Confidence            4689999999999999999999999999999999999999999997 679999999999999999999999999999999


Q ss_pred             eccceeeeeccC--CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743           81 LYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG  158 (336)
Q Consensus        81 ~~Pvd~~~~~~~--~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG  158 (336)
                      .+|+|+++...+  ......+.+...||.+|+++||||+|.+.|.+.+..++    ||+||||++--+.+   ....||=
T Consensus       278 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~a~----tI~wNGP~GvfE~~---~F~~GT~  350 (415)
T d1qpga_         278 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAK----TIVWNGPPGVFEFE---KFAAGTK  350 (415)
T ss_dssp             ECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCS----EEEEESCSSCTTSG---GGCHHHH
T ss_pred             eeeccEEEeeccccccccceeecccccCCcccccccchhhHHHHHHHhccCc----EEEEECCccccccc---chhhHHH
Confidence            999999997653  22334565678899999999999999999999999999    99999998643222   2344555


Q ss_pred             HHHHHHHHh
Q 019743          159 LFLLGMARK  167 (336)
Q Consensus       159 ~~~~~la~~  167 (336)
                      .++-++++.
T Consensus       351 ~i~~~ia~~  359 (415)
T d1qpga_         351 ALLDEVVKS  359 (415)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555566553

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=1.8e-28  Score=230.71  Aligned_cols=139  Identities=22%  Similarity=0.463  Sum_probs=125.8

Q ss_pred             CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHH-cCCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (336)
Q Consensus         2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a-~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i   80 (336)
                      +++|+||+++|+||||++|||++|+|+++++|.+++||+|+|+||+| +|+++|+++++++.++.++.+++.+++++.+|
T Consensus       197 l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantfL~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i  276 (413)
T d1hdia_         197 AESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKI  276 (413)
T ss_dssp             HTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHHHHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEE
T ss_pred             hhCCCCcceEEEeccccccHHHHHHHHHhhhceeeecchhHHHHHHHhcCCccccccchhhhhhhHHHHHHHHHHcCCcc
Confidence            46899999999999999999999999999999999999999999998 69999999999999999999999999999999


Q ss_pred             eccceeeeeccCCC--CCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCC
Q 019743           81 LYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHD  144 (336)
Q Consensus        81 ~~Pvd~~~~~~~~~--~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~  144 (336)
                      .+|+|+++...+..  ....+.....+|.+++++||||+|.+.|.+.+..++    ||+||||++-
T Consensus       277 ~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~ak----tI~wNGP~Gv  338 (413)
T d1hdia_         277 TLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKYSEAVARAK----QIVWNGPVGV  338 (413)
T ss_dssp             ECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHHHHHHHHCS----EEEEESCSSC
T ss_pred             ccccceeecccccccccccccccccccCCCceeecccchhhHHHHHHhccCC----EEEEECCccc
Confidence            99999999865322  223344556799999999999999999999999999    9999999864

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1e-27  Score=213.98  Aligned_cols=190  Identities=14%  Similarity=0.126  Sum_probs=146.3

Q ss_pred             ccCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccc
Q 019743           58 VEKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDI  136 (336)
Q Consensus        58 ~~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i  136 (336)
                      +.++.++..++++++. ..|+    |++|++|+. |+|.+|.|.+.++||        +|+|+.+++.++.....     
T Consensus        47 l~~~~~~~~~~~i~rR-~~~~----Pl~YI~g~~~F~~~~f~v~~~vlIP--------RpeTE~lv~~~~~~~~~-----  108 (271)
T d1nv8a_          47 VSPTEEKRILELVEKR-ASGY----PLHYILGEKEFMGLSFLVEEGVFVP--------RPETEELVELALELIRK-----  108 (271)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTC----CHHHHHTEEEETTEEEECCTTSCCC--------CTTHHHHHHHHHHHHHH-----
T ss_pred             CCHHHHHHHHHHHHHh-hCCC----ChhhhcCcEEEeeeEEEEecCccCc--------hhhhhhhhhhhhhhhcc-----
Confidence            3444577788888874 4555    999999998 999999999999999        59999999988764321     


Q ss_pred             ccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH-------H
Q 019743          137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS-------T  208 (336)
Q Consensus       137 ~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~-------~  208 (336)
                              .+..+++|+|||||++++.+|+ +|+++|+|+|+|+.|++.|++|++++++.+ +.+.++|+.+       .
T Consensus       109 --------~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~  179 (271)
T d1nv8a_         109 --------YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFAS  179 (271)
T ss_dssp             --------HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTT
T ss_pred             --------ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCc
Confidence                    1246899999999999999985 589999999999999999999999999865 6777888754       3


Q ss_pred             HHhhhcCCCCeEEEEEeeCCCCCCCcchhhh--------hcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc
Q 019743          209 FRSIVASYPGKLILVSIQCPNPDFNRPEHRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  280 (336)
Q Consensus       209 ~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~--------~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  280 (336)
                      ||.|+|||||....-  ..+ +.. ..++..        ..++++++   .++|+|||++++|++. +|.+.+.+++.+.
T Consensus       180 fDlIVsNPPYI~~~~--~l~-~~~-~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~G~l~~Eig~-~Q~~~v~~l~~~~  251 (271)
T d1nv8a_         180 IEMILSNPPYVKSSA--HLP-KDV-LFEPPEALFGGEDGLDFYREFF---GRYDTSGKIVLMEIGE-DQVEELKKIVSDT  251 (271)
T ss_dssp             CCEEEECCCCBCGGG--SCT-TSC-CCSCHHHHBCTTTSCHHHHHHH---HHCCCTTCEEEEECCT-TCHHHHTTTSTTC
T ss_pred             ccEEEEcccccCccc--ccc-eee-eeccccccccccchHHHHHHHH---HHhcCCCCEEEEEECH-HHHHHHHHHHHhC
Confidence            799999999974321  111 111 111221        23466665   5789999999999986 6688888887776


Q ss_pred             CC
Q 019743          281 GK  282 (336)
Q Consensus       281 g~  282 (336)
                      ||
T Consensus       252 g~  253 (271)
T d1nv8a_         252 VF  253 (271)
T ss_dssp             EE
T ss_pred             CE
Confidence            65

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=173.51  Aligned_cols=185  Identities=10%  Similarity=0.024  Sum_probs=133.4

Q ss_pred             cCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCC
Q 019743           91 IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD  170 (336)
Q Consensus        91 ~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~  170 (336)
                      .|+|.++++.+.++||        +|+|+..|...+......     .+  ....+..++|||||||||+++.||++.|+
T Consensus        21 ~f~gl~~~v~~~~LiP--------r~~~r~~~~~~i~~l~~~-----~~--~~~~~~~~~LDiGtGsg~I~~~l~~~~~~   85 (250)
T d2h00a1          21 EDFGLSIDIPLERLIP--------TVPLRLNYIHWVEDLIGH-----QD--SDKSTLRRGIDIGTGASCIYPLLGATLNG   85 (250)
T ss_dssp             HHHCCCCCCCTTSCCC--------CHHHHHHHHHHHHHHHCC-----CC--GGGCCCCEEEEESCTTTTHHHHHHHHHHC
T ss_pred             HHcCceEEeCCCeecC--------CCCCHHHHHHHHHHHhhh-----hc--cCccccceEEEeCCCchHHHHHHHHhCCC
Confidence            3678899999999999        599988887777653210     00  01123568999999999999999999999


Q ss_pred             CeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH------------HHHhhhcCCCCeEEEEEee--------CCC
Q 019743          171 LNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS------------TFRSIVASYPGKLILVSIQ--------CPN  229 (336)
Q Consensus       171 ~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~------------~~d~ivsnpp~~~d~i~~~--------~~d  229 (336)
                      ++++|+|+|+++++.|++|++.+++.+ +.+++.+...            .||.++|||||..+.-...        ...
T Consensus        86 ~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~  165 (250)
T d2h00a1          86 WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPP  165 (250)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC------------------
T ss_pred             ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccC
Confidence            999999999999999999999999864 7777754421            3899999999964321110        001


Q ss_pred             CCCCcchhhh--------hcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecc
Q 019743          230 PDFNRPEHRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  290 (336)
Q Consensus       230 p~~~~~~~~~--------~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d  290 (336)
                      |.........        ..++++++++...+++..|++.++.+..+....+.+.+.+.|+..+.+..+
T Consensus       166 p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         166 PSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEF  234 (250)
T ss_dssp             -------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             chhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEEe
Confidence            1100000001        125789999999999999999887876666788999999999987766544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=1.1e-17  Score=146.91  Aligned_cols=160  Identities=13%  Similarity=0.025  Sum_probs=125.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHh-CCCcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~-~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+.+|||+|||||.++..||+. .|+.+|+++|+++++++.|++|++++ +..|+.+.++|+.+.    +  ++..+|.+
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~----~--~~~~fD~V  158 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV  158 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc----c--ccceeeee
Confidence            3689999999999999999987 68899999999999999999999876 457899999998653    2  45678999


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCC
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  303 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~  303 (336)
                      ++..|+||             .+++.+.+.|||||++.+.....+|...+.+.++++||..+++..-..      .+|..
T Consensus       159 ~ld~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~~~------R~~~~  219 (250)
T d1yb2a1         159 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMK------RRILV  219 (250)
T ss_dssp             EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEEE------CCCCC
T ss_pred             eecCCchH-------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEEEe------EEEEE
Confidence            99999998             778999999999999999877778888888999999998765543211      12322


Q ss_pred             CCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 019743          304 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV  335 (336)
Q Consensus       304 ~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~~  335 (336)
                      .. ...+..    ....|++-|-+.+||+.|.
T Consensus       220 ~~-~~~RP~----~~mvgHTgfl~~arK~~g~  246 (250)
T d1yb2a1         220 RE-GATRPA----SDDLTHTAFITFAIKKSGM  246 (250)
T ss_dssp             CT-TCCCCG----GGGSCEEEEEEEEEECCSC
T ss_pred             cC-CccCCC----CCCccchhhhhhhcccCCC
Confidence            21 111111    1346777788888988764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=1.1e-16  Score=134.80  Aligned_cols=138  Identities=15%  Similarity=0.244  Sum_probs=106.8

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      +|.+++.-...+.....             .++.+|||||||||.+++.+|+.  ..+|+|+|+|+.|++.|++|+++++
T Consensus        15 ~~t~~eir~~il~~l~~-------------~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g   79 (186)
T d1l3ia_          15 GPTAMEVRCLIMCLAEP-------------GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG   79 (186)
T ss_dssp             CCCCHHHHHHHHHHHCC-------------CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHhcCC-------------CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC
Confidence            67776665555554331             24679999999999999999977  4689999999999999999999999


Q ss_pred             CC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH
Q 019743          195 IT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  273 (336)
Q Consensus       195 ~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  273 (336)
                      +. |++++++|+.+.+   .  +...+|.+++..+..           ..+++++.+.+.|||||++++.....+....+
T Consensus        80 l~~~v~~~~gda~~~~---~--~~~~~D~v~~~~~~~-----------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~  143 (186)
T d1l3ia_          80 LGDNVTLMEGDAPEAL---C--KIPDIDIAVVGGSGG-----------ELQEILRIIKDKLKPGGRIIVTAILLETKFEA  143 (186)
T ss_dssp             CCTTEEEEESCHHHHH---T--TSCCEEEEEESCCTT-----------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHH
T ss_pred             CCcceEEEECchhhcc---c--ccCCcCEEEEeCccc-----------cchHHHHHHHHHhCcCCEEEEEeeccccHHHH
Confidence            84 8999999987642   1  345678877653221           23588999999999999999876555556677


Q ss_pred             HHHHHHcCCc
Q 019743          274 KQQFLEYGKG  283 (336)
Q Consensus       274 ~~~l~~~g~~  283 (336)
                      .+.+...++.
T Consensus       144 ~~~l~~~~~~  153 (186)
T d1l3ia_         144 MECLRDLGFD  153 (186)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            7888888774

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=9.2e-17  Score=141.95  Aligned_cols=158  Identities=16%  Similarity=0.188  Sum_probs=121.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhC---CCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~---~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      .+.+|||+|||||.+++.||+. .|+.+++++|+++++++.|++|++...   ..|+.+.++|+.+.     ..|+.++|
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-----~~~~~~fD  170 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELPDGSVD  170 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCCTTCEE
T ss_pred             CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-----cccCCCcc
Confidence            4789999999999999999998 799999999999999999999998752   46899999998653     22567899


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHH-HcCCcceeeeccccccccCCCC
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKLVLVQDECDTKTNQGG  300 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~d~~~~~~~~~~  300 (336)
                      .+++..|+||             ..+..+.+.|||||++.+.+...+|...+.+.+. +.+|..+++..=      ...+
T Consensus       171 aV~ldlp~P~-------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~------l~R~  231 (264)
T d1i9ga_         171 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWET------LQRG  231 (264)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECC------CCCC
T ss_pred             eEEEecCCHH-------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEE------EEEE
Confidence            9999999998             7889999999999999998888888888888886 456876655421      1122


Q ss_pred             CCCCC-CCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743          301 WLGEN-SFGVRSDWEQHVIDRGAPMYRLMLSKPS  333 (336)
Q Consensus       301 ~~~~~-~~~~~t~~e~~~~~~G~~i~~~~~~~~~  333 (336)
                      |..+. ...+.+      ...|++-|-..+||++
T Consensus       232 ~~v~~~~~RP~~------~~vgHTgfl~~ark~~  259 (264)
T d1i9ga_         232 WNVVGLAVRPQH------SMRGHTAFLVATRRLA  259 (264)
T ss_dssp             EEEETTEEEECS------CCCCCSCEEEEEEBCC
T ss_pred             EEeccCeeCCCC------CCccchHHHhhhhhcc
Confidence            32221 001110      2357777877788764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=8.2e-17  Score=141.89  Aligned_cols=122  Identities=15%  Similarity=0.263  Sum_probs=96.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||||.+++.+++.  ..+|+|+|+|+.|++.|++|++.++++ ++++++|+...    +  |...+|.++.+
T Consensus       121 g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~----~--~~~~fD~V~an  191 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L--PFGPFDLLVAN  191 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G--GGCCEEEEEEE
T ss_pred             cCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccc----c--cccccchhhhc
Confidence            679999999999999998876  578999999999999999999999875 57889997653    2  23456776665


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ...           ....++++.+.+.|||||++++.--...+.+.+.+.+.++||......
T Consensus       192 i~~-----------~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         192 LYA-----------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CCH-----------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             ccc-----------ccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEE
Confidence            311           123578899999999999999843334567889999999999876554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.6e-16  Score=140.93  Aligned_cols=124  Identities=12%  Similarity=0.156  Sum_probs=108.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      ++.+|||+|||||.++..+|+.. |..+++++|+|+++++.|++|+++.++ .++.+...|....+      +...+|.+
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~------~~~~~D~V  176 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF------DEKDVDAL  176 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC------SCCSEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc------cccceeee
Confidence            47899999999999999999884 889999999999999999999999987 57888888865432      34558888


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ++..|+||             .+++++.+.|||||++.+.....+|.+.+.+.++++||..+++.
T Consensus       177 ~~d~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         177 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             EecCCCHH-------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEE
Confidence            89999998             78899999999999999877777888999999999999877665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=9.9e-16  Score=132.62  Aligned_cols=102  Identities=15%  Similarity=0.240  Sum_probs=83.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+++..  .+++|+|+|+.|++.|++++...+.+|+.|+++|+.+.     +.|+.++|.++..
T Consensus        16 ~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-----~~~~~~fD~v~~~   88 (231)
T d1vl5a_          16 NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTCR   88 (231)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEEE
T ss_pred             cCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc-----ccccccccccccc
Confidence            6799999999999999999884  68999999999999999999999999999999998763     2256778888765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ..-.|..        ...++++++.++|||||++++.
T Consensus        89 ~~l~~~~--------d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          89 IAAHHFP--------NPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             SCGGGCS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccC--------CHHHHHHHHHHhcCCCcEEEEE
Confidence            3222211        1348999999999999999984

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=3.7e-16  Score=132.39  Aligned_cols=118  Identities=14%  Similarity=0.250  Sum_probs=89.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ..+|||+|||+|.+++.+|+..+  +++++|+|+.+++.|++|++.+++++  ++++++|+.+.    +  ++..+|.++
T Consensus        53 ~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~----~--~~~~fD~Ii  124 (194)
T d1dusa_          53 DDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--KDRKYNKII  124 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--TTSCEEEEE
T ss_pred             CCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh----h--ccCCceEEE
Confidence            67899999999999999998854  79999999999999999999998764  89999998642    1  344567666


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHH
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  279 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~  279 (336)
                      .+.|  ..     ......+++++++.++|+|||.+++........+.+.+.+.+
T Consensus       125 ~~~p--~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~  172 (194)
T d1dusa_         125 TNPP--IR-----AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             ECCC--ST-----TCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred             Eccc--EE-----ecchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHH
Confidence            5422  11     111234689999999999999998876554545555555554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-15  Score=138.01  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=102.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhC-----------CCcEEEEecchhHHHHhhh
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-----------ITNGYFIATNATSTFRSIV  213 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~-----------~~nv~~~~~d~~~~~d~iv  213 (336)
                      ++.+|||+|||||.+++.||+. .|+.+|+++|+++++++.|++|+++.+           ..|+.+.++|+......  
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~--  175 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED--  175 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc--
Confidence            4789999999999999999987 689999999999999999999998642           35899999998653111  


Q ss_pred             cCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc--CCcceeee
Q 019743          214 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY--GKGKLVLV  288 (336)
Q Consensus       214 snpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~--g~~~~~~~  288 (336)
                       .++..+|.+++.+|+||             ..+.++.++|||||++++-+..-.|...+.+.++..  +|..+++.
T Consensus       176 -~~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~  238 (324)
T d2b25a1         176 -IKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKIS  238 (324)
T ss_dssp             ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             -cCCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEE
Confidence             13556899999999998             678899999999999999888778888888888754  57655543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=1e-15  Score=133.17  Aligned_cols=103  Identities=23%  Similarity=0.324  Sum_probs=84.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.+|||||||+|.++..+++..  .+++|+|+|+.|++.|++++...+.+|+.++++|+.+.     ..|..++|.++.
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~   88 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC   88 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-----cccccccceeee
Confidence            36799999999999999999884  68999999999999999999999999999999998763     225677888776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.|..        ....+++++.++|||||.+++.
T Consensus        89 ~~~l~~~~--------d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          89 RYAAHHFS--------DVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             ESCGGGCS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eceeeccc--------CHHHHHHHHHHeeCCCcEEEEE
Confidence            54322211        1258999999999999998883

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.6e-15  Score=131.61  Aligned_cols=120  Identities=17%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC
Q 019743          116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI  195 (336)
Q Consensus       116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~  195 (336)
                      |-|.+.++.+.....-             .++.+|||||||+|.++..++++. +++++|+|+|+.|++.|++++...++
T Consensus        16 p~~~~~~~~l~~~~~l-------------~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl   81 (245)
T d1nkva_          16 PFTEEKYATLGRVLRM-------------KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV   81 (245)
T ss_dssp             SCCHHHHHHHHHHTCC-------------CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHcCC-------------CCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhc
Confidence            5566666665544321             236799999999999999999876 48999999999999999999999988


Q ss_pred             C-cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          196 T-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       196 ~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      . +++|.++|+.+.    +  ++.++|.++....--+..        ...++++++.++|||||++++.
T Consensus        82 ~~~v~~~~~d~~~~----~--~~~~fD~v~~~~~~~~~~--------d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          82 SERVHFIHNDAAGY----V--ANEKCDVAACVGATWIAG--------GFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             TTTEEEEESCCTTC----C--CSSCEEEEEEESCGGGTS--------SSHHHHHHHTTSEEEEEEEEEE
T ss_pred             cccchhhhhHHhhc----c--ccCceeEEEEEehhhccC--------CHHHHHHHHHHHcCcCcEEEEE
Confidence            6 599999998763    2  466788776543221110        1258999999999999999984

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=3.2e-15  Score=129.25  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ++.+|||||||+|.++..|++.  .|+++++|+|+|+.|++.|+++++..+. .++.+..+|..+.       |....+.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~d~  111 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-------EIKNASM  111 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-------CCCSEEE
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-------cccccee
Confidence            3678999999999999999986  4789999999999999999999877654 4688888887543       3333455


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe----CcHHH----HHHHHHHHHHcCCcceeeecccccc
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS----DIEEV----MLRMKQQFLEYGKGKLVLVQDECDT  294 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~----~~~~~----~~~~~~~l~~~g~~~~~~~~d~~~~  294 (336)
                      +...+.-.+.      ......+++++++++|||||.+++..    .....    ...........++...+.... .  
T Consensus       112 i~~~~~l~~~------~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--  182 (225)
T d1im8a_         112 VILNFTLQFL------PPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQK-R--  182 (225)
T ss_dssp             EEEESCGGGS------CGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHH-H--
T ss_pred             eEEeeecccc------ChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHH-H--
Confidence            5444322221      11123589999999999999999842    11111    111122223344442211110 0  


Q ss_pred             ccCCCCCCCCCCC--CCCCHHHHHHHHcCCCeEEEEEEe
Q 019743          295 KTNQGGWLGENSF--GVRSDWEQHVIDRGAPMYRLMLSK  331 (336)
Q Consensus       295 ~~~~~~~~~~~~~--~~~t~~e~~~~~~G~~i~~~~~~~  331 (336)
                       ..     .+...  ....+++..+.+.|+.-....++.
T Consensus       183 -~~-----~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~  215 (225)
T d1im8a_         183 -TA-----LENVMRTDSIETHKVRLKNVGFSQVELWFQC  215 (225)
T ss_dssp             -HH-----HHHHCCCCCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             -HH-----hhcccCCCCHHHHHHHHHHcCCCceEEeeee
Confidence             00     00001  223467788999999887776654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.5e-15  Score=128.79  Aligned_cols=131  Identities=10%  Similarity=0.109  Sum_probs=97.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ...+|||||||+|.++..+++..+ .+|+|+|+|++|++.|++++...+..+++|+++|+.+.     +.++..+|.++.
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~-----~~~~~~fD~I~~  133 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWI  133 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccc-----cccccccccccc
Confidence            357899999999999999877664 58999999999999999998887778899999998763     225667888876


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH--------------HHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ...-.+...      ....++++++++.|+|||.+++......              ..+.+.+++.+.||..+...
T Consensus       134 ~~~l~h~~~------~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~  204 (222)
T d2ex4a1         134 QWVIGHLTD------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  204 (222)
T ss_dssp             ESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccchh------hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence            543222110      1134799999999999999998421100              14567778888888766544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=6.4e-15  Score=126.56  Aligned_cols=105  Identities=16%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..+|+.  ..+++|+|+|+.|++.|++++...+ .++.++++|+.+.     ..++.++|.++..
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l-----~~~~~~fD~I~~~  109 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIFI  109 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEEE
T ss_pred             CCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcccc-ccccccccccccc-----cccCcCceEEEEe
Confidence            579999999999999999986  6789999999999999999988776 4578888888653     2356678887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ..-.|..      .....++++++.++|||||++++...
T Consensus       110 ~~l~~~~------~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         110 DSIVHFE------PLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             SCGGGCC------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhCC------hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            3222211      01235789999999999999988654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.56  E-value=3.3e-14  Score=121.53  Aligned_cols=128  Identities=14%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||+|..+..+|+..|+.+|+|+|+|+.|++.|+++++..  .|+.++..|+... +. ..+....++.++.
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~-~~-~~~~~~~vd~v~~  131 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKP-WK-YSGIVEKVDLIYQ  131 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCG-GG-TTTTCCCEEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCc-cc-cccccceEEEEEe
Confidence            478999999999999999999999999999999999999999998765  5899999998653 11 1111233454443


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe-----C----cHHHHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----D----IEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~-----~----~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      .++.++          ....++.++.+.|||||.+++..     +    .........+.++ .||...+..
T Consensus       132 ~~~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~E~i  192 (209)
T d1nt2a_         132 DIAQKN----------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIVKHG  192 (209)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             cccChh----------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEEEEE
Confidence            332221          23578999999999999998843     1    1223444444443 588766543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=4.6e-14  Score=122.38  Aligned_cols=129  Identities=14%  Similarity=0.092  Sum_probs=93.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||||..+..+|+..|+..|+|+|+|+.|++.|++++..  ..|+..+..|+..... .. ...+.++.++.
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--~~ni~~i~~d~~~~~~-~~-~~~~~v~~i~~  149 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQE-YA-NIVEKVDVIYE  149 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGG-GT-TTCCCEEEEEE
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--hcccceEEEeeccCcc-cc-cccceeEEeec
Confidence            47899999999999999999999999999999999999999988754  3678888888765311 11 11223343333


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceeee
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      .+..+.          ..+.++.++.+.|||||.+++..         +.....+...+.|++.||...+..
T Consensus       150 ~~~~~~----------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         150 DVAQPN----------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             cccchH----------HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            222111          23578999999999999988842         223345667788899999876543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.54  E-value=1.4e-14  Score=129.59  Aligned_cols=128  Identities=13%  Similarity=0.020  Sum_probs=97.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.++..||+++ +++|+|+|+|+.|++.|++++...++. +++++++|+.+.     +.|+.++|.|+
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-----~~~~~sfD~V~  140 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW  140 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc-----cccccccchhh
Confidence            36899999999999999999875 679999999999999999999999885 799999998763     33677889876


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-------cH---HH-----------HHHHHHHHHHcCCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-------IE---EV-----------MLRMKQQFLEYGKG  283 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-------~~---~~-----------~~~~~~~l~~~g~~  283 (336)
                      ....-.+..        ...++++++.++|||||++++...       ..   ..           .....+++++.||.
T Consensus       141 ~~~~l~h~~--------d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~  212 (282)
T d2o57a1         141 SQDAFLHSP--------DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLV  212 (282)
T ss_dssp             EESCGGGCS--------CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEE
T ss_pred             ccchhhhcc--------CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCc
Confidence            642211110        124899999999999999988421       00   00           23446678888887


Q ss_pred             ceee
Q 019743          284 KLVL  287 (336)
Q Consensus       284 ~~~~  287 (336)
                      .+.+
T Consensus       213 ~i~~  216 (282)
T d2o57a1         213 TLRT  216 (282)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=2.2e-14  Score=125.51  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..+|||||||+|.++..|++.  ..+++|+|+|++|++.|++++..++. ++.++++|+.+.     + ++..+|.+++
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l-----~-~~~~fD~I~~  111 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-----A-FKNEFDAVTM  111 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-----C-CCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-cchheehhhhhc-----c-cccccchHhh
Confidence            3568999999999999999987  56899999999999999999988765 699999998763     1 3456887765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+..-     ++.......+++++++++|||||.+++...+
T Consensus       112 ~~~~~-----~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         112 FFSTI-----MYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             CSSGG-----GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhh-----hcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            42110     0111112358999999999999999986544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=3e-14  Score=120.62  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=83.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|..+..++++  ..+++|+|+|+.|++.|++++...+++++.+...|+...      .++..+|.|+..
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~------~~~~~fD~I~~~  102 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL------TFDGEYDFILST  102 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC------CCCCCEEEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc------cccccccEEEEe
Confidence            458999999999999999998  578999999999999999999999999999999997653      145678877765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+      -......++++++.++|+|||.+++.+
T Consensus       103 ~~~~~------~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         103 VVMMF------LEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             SCGGG------SCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeec------CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            32211      111124589999999999999998854

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.51  E-value=3.6e-14  Score=124.10  Aligned_cols=106  Identities=12%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..++++.  .+++|+|+|+.|++.|++++...+. +++++++|+.+.     + ++..+|.+++.
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~i~~~  108 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----N-INRKFDLITCC  108 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----C-CSCCEEEEEEC
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCc-cceeeccchhhh-----c-cccccccccee
Confidence            4689999999999999999984  5899999999999999999887775 699999998763     1 24567877653


Q ss_pred             CCC-CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~d-p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +.. .+.     .......++++++++.|+|||.+++....
T Consensus       109 ~~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         109 LDSTNYI-----IDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             TTGGGGC-----CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             eeeeecc-----CCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            211 110     00112357999999999999999986543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=2.5e-13  Score=121.11  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=80.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.++..++++. +++|+|+|+|+++++.|++++++.++. ++.+...|..+        ++..+|.++
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~--------~~~~fD~i~  122 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--------FAEPVDRIV  122 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--------CCCCCSEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh--------hccchhhhh
Confidence            46799999999999999998876 579999999999999999999988875 47777777543        245566654


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.-      +|-....++.+++++.++|||||++++.+
T Consensus       123 si~~~------eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAF------EHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCG------GGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HhhHH------HHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            43111      11111245799999999999999999854

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=119.12  Aligned_cols=133  Identities=11%  Similarity=-0.052  Sum_probs=92.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|..+..+|+..+ .+++|||+|+.+++.|++++...+ .++.++..|+.....   ..|..++|.++..
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~i~fD  128 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---TLPDGHFDGILYD  128 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG---GSCTTCEEEEEEC
T ss_pred             CCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcc-ccccccccccccccc---ccccccccceeec
Confidence            56899999999999999998754 689999999999999999986654 468888888765422   2255678877643


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC--------------cHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--------------IEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~--------------~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      ...   ......+......++++++++|||||.|.+...              ...+.+.+...+.+.||....+
T Consensus       129 ~~~---~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~i  200 (229)
T d1zx0a1         129 TYP---LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI  200 (229)
T ss_dssp             CCC---CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred             ccc---cccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEEE
Confidence            211   112222223456899999999999999987220              0112345556677788875543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.46  E-value=4.4e-13  Score=117.82  Aligned_cols=133  Identities=19%  Similarity=0.223  Sum_probs=91.4

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      .|+....|...+......... .+.+.+.-....+|||||||+|.++..+++++|+.+++++|+ +++++.|++++...+
T Consensus        50 ~~~~~~~f~~~m~~~~~~~~~-~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~  127 (253)
T d1tw3a2          50 RPDLRASFDSLLACDQDVAFD-APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG  127 (253)
T ss_dssp             CHHHHHHHHHHHTTTTTTTTH-HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhHHHHHH-HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh
Confidence            366666666655432211100 011112222356899999999999999999999999999998 679999999999888


Q ss_pred             C-CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          195 I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       195 ~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      + .+++++.+|+++.       .|..+|.+++...-.      +-......++++++++.|||||++++
T Consensus       128 ~~~rv~~~~~D~~~~-------~~~~~D~v~~~~vlh------~~~d~~~~~~L~~~~~~LkPGG~l~i  183 (253)
T d1tw3a2         128 LSDRVDVVEGDFFEP-------LPRKADAIILSFVLL------NWPDHDAVRILTRCAEALEPGGRILI  183 (253)
T ss_dssp             CTTTEEEEECCTTSC-------CSSCEEEEEEESCGG------GSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccchhhccccchhh-------cccchhheeeccccc------cCCchhhHHHHHHHHHhcCCCcEEEE
Confidence            6 4799999997542       234567766543211      10011224789999999999999888

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=7.5e-14  Score=123.93  Aligned_cols=103  Identities=15%  Similarity=0.217  Sum_probs=81.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +..+|||||||+|.++..+++..|+.+++|+|+|+.|++.|+++     ..++.|+++|+.+.     +.++.++|.++.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l-----~~~~~sfD~v~~  153 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRL-----PFSDTSMDAIIR  153 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSC-----SBCTTCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----cccccceeeehhhc-----cCCCCCEEEEee
Confidence            46799999999999999999999999999999999999998764     35789999998753     235778888775


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  273 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  273 (336)
                      .+. |.              .++++.++|||||.+++.+...+...++
T Consensus       154 ~~~-~~--------------~~~e~~rvLkpgG~l~~~~p~~~~l~el  186 (268)
T d1p91a_         154 IYA-PC--------------KAEELARVVKPGGWVITATPGPRHLMEL  186 (268)
T ss_dssp             ESC-CC--------------CHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             cCC-HH--------------HHHHHHHHhCCCcEEEEEeeCCcchHHH
Confidence            532 21              2467899999999999987554433333

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.44  E-value=2e-13  Score=121.95  Aligned_cols=104  Identities=15%  Similarity=0.239  Sum_probs=81.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.++..+++..| +.+++|+|+|+.+++.|+++....+. +++|.++|+.+.     + ++..+|.++
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~-----~-~~~~fD~v~   99 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEI-----E-LNDKYDIAI   99 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTC-----C-CSSCEEEEE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccc-----c-ccCCceEEE
Confidence            356899999999999999999876 47899999999999999999887664 799999998653     1 234578776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ....-.+..        ....+++++.+.|||||.+++..
T Consensus       100 ~~~~l~~~~--------d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMT--------TPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EESCGGGCS--------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EehhhhcCC--------CHHHHHHHHHHHcCcCcEEEEEE
Confidence            653222111        12489999999999999998744

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.43  E-value=3.5e-13  Score=118.28  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=82.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|..+..+++.. ..+++|+|+|+.|++.|++++...+.. ++.|+++|+...   .+ .+...+|.+..
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~---~~-~~~~~fD~V~~   99 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR---HM-DLGKEFDVISS   99 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS---CC-CCSSCEEEEEE
T ss_pred             cCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh---cc-cccccceEEEE
Confidence            5789999999999999998874 358999999999999999988766643 799999998542   01 13446788776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      .+.-.+.    .......+.+++++.++|||||++++.+..
T Consensus       100 ~~~l~~~----~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         100 QFSFHYA----FSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             ESCGGGG----GSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cceeeec----CCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            5422210    001122358999999999999999986644

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.43  E-value=4.2e-13  Score=118.07  Aligned_cols=104  Identities=18%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ...+|||+|||+|.++..|+.... .+|+|+|+|+.|++.|+++..  +..+++++++|+.+.     ..++..+|.|++
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~-----~~~~~~fD~I~~  164 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETA-----TLPPNTYDLIVI  164 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGC-----CCCSSCEEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccc--ccccceeEEcccccc-----ccCCCccceEEe
Confidence            357899999999999999887653 479999999999999998764  345789999998653     224567898877


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.+..      .....++++++.+.|+|||.+++.
T Consensus       165 ~~vl~hl~------d~d~~~~l~~~~~~LkpgG~iii~  196 (254)
T d1xtpa_         165 QWTAIYLT------DADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             ESCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccccccc------hhhhHHHHHHHHHhcCCCcEEEEE
Confidence            64322211      111348899999999999999984

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=8.7e-13  Score=118.07  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=81.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|.+++.+|+++ +++++|+++|+++++.|+++++..++. .+.+...|...        ++..+|.|+
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--------~~~~fD~i~  131 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--------FDEPVDRIV  131 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--------CCCCCSEEE
T ss_pred             CCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--------cccccceEe
Confidence            47899999999999999999887 579999999999999999999998876 47787777532        344566554


Q ss_pred             ee-----CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQ-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~-----~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..     ++++..    ......++.+++.+.++|||||++++.+
T Consensus       132 sie~~eH~~~~~~----~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         132 SLGAFEHFADGAG----DAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EESCGGGTTCCSS----CCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             echhHHhcchhhh----hhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            32     222210    0111346899999999999999999954

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=1.6e-12  Score=118.00  Aligned_cols=134  Identities=15%  Similarity=0.113  Sum_probs=95.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.+++.+|..  ..+|+++|+|+.+++.|++|++.+|++|++++++|+.+.....- .....+|.|++.
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~-~~~~~fD~Vi~D  222 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLE-KEGERFDLVVLD  222 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHH-HTTCCEEEEEEC
T ss_pred             CCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhH-hhhcCCCEEEEc
Confidence            578999999999999999875  57899999999999999999999999999999999977533221 123456766665


Q ss_pred             CCCCCCCcch-hhhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HHHHHHHHHHHHHcCCc
Q 019743          227 CPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       227 ~~dp~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~l~~~g~~  283 (336)
                      .|.-...... ......+.+++..+.++|+|||.+++.+..     ....+.+.+.+...+..
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~  285 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL  285 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCC
Confidence            3321111111 111234678999999999999999986633     23333455555666644

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.42  E-value=7.9e-14  Score=116.91  Aligned_cols=107  Identities=8%  Similarity=-0.060  Sum_probs=75.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC------------CcEEEEecchhHHHHhhh
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI------------TNGYFIATNATSTFRSIV  213 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~------------~nv~~~~~d~~~~~d~iv  213 (336)
                      ++.+|||+|||+|..+..||++  +.+|+|+|+|+.|++.|++++...+.            .++.++++|+.+....  
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~--   95 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR--   95 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH--
T ss_pred             CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc--
Confidence            4679999999999999999998  78999999999999999998754321            2356777777543111  


Q ss_pred             cCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          214 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       214 snpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                        +...+|.++....-.+      -.....+.+++.+.++|||||.+++..
T Consensus        96 --~~~~~D~i~~~~~l~~------l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          96 --DIGHCAAFYDRAAMIA------LPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             --HHHSEEEEEEESCGGG------SCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             --cccceeEEEEEeeeEe------cchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence              1123555544322111      111124689999999999999988744

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=1e-12  Score=117.22  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||+|..++.+|+.+ +++|+|+++|+..++.|++++++.++ .++++...|..+.        |..+|.++
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------~~~fD~i~  132 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------DEPVDRIV  132 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--------ccccccee
Confidence            47899999999999999999998 69999999999999999999888776 4699999997542        34456544


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.-      .|-....++.+++++.++|||||++++.+
T Consensus       133 si~~~------eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SIGAF------EHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EESCG------GGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eehhh------hhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            32111      11111235689999999999999999844

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.40  E-value=2.3e-12  Score=111.06  Aligned_cols=128  Identities=13%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||+|||+|..+..+|+. .|+.+|+|+|+|+.|++.++++++.  ..|+..+..|+...-.  ..+....+|.++
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~~--~~~~~~~vD~i~  148 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE--YRALVPKVDVIF  148 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG--GTTTCCCEEEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCccc--ccccccceEEEE
Confidence            4789999999999999999998 4889999999999999999998754  4578888888754311  122345677776


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceeee
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                      ..++.|.          ....+++++.+.|||||.+++.+         +.......+.++ .+.+|...+..
T Consensus       149 ~d~~~~~----------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l-~~~gf~iie~i  210 (227)
T d1g8aa_         149 EDVAQPT----------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERE-LSEYFEVIERL  210 (227)
T ss_dssp             ECCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHH-HHTTSEEEEEE
T ss_pred             EEccccc----------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHH-HHcCCEEEEEE
Confidence            6554432          23478999999999999998843         112333344444 45588766543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=6.1e-13  Score=113.90  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=80.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||||||||.++..+|+.. +..+|+++|+++++++.|++|++..+..|+.++++|+.+.+   .  +...+|.++
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~---~--~~~~fD~I~  149 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV---P--EFSPYDVIF  149 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC---G--GGCCEEEEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc---c--cccchhhhh
Confidence            36899999999999999999874 78899999999999999999999999999999999986531   1  123478877


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +...-++              +.+.+.+.|||||++++..+.
T Consensus       150 ~~~~~~~--------------~p~~l~~~LkpGG~lv~pv~~  177 (213)
T d1dl5a1         150 VTVGVDE--------------VPETWFTQLKEGGRVIVPINL  177 (213)
T ss_dssp             ECSBBSC--------------CCHHHHHHEEEEEEEEEEBCB
T ss_pred             hhccHHH--------------hHHHHHHhcCCCcEEEEEECc
Confidence            6542221              113456779999999986543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=8.1e-13  Score=109.21  Aligned_cols=109  Identities=15%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||+|||||.+++..+++  +++++++|+|+.+++.|++|++.+++.+ ++...+....+... .++...+|.+++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~fD~If~  116 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEA-KAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHH-HHTTCCEEEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccc-cccCCccceeEE
Confidence            3679999999999999998887  5689999999999999999999998864 34444443211110 112233454443


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +   |.+.....   .....+++  ..+|+|||.+++++..
T Consensus       117 D---PPY~~~~~---~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         117 A---PPYAMDLA---ALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             C---CCTTSCTT---HHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             c---cccccCHH---HHHHHHHH--cCCcCCCeEEEEEecC
Confidence            3   21111100   01123332  3589999999998753

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.9e-13  Score=117.44  Aligned_cols=100  Identities=16%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||+|||+|.++..+++.  ..+++|+|+|+.|++.|+++.    ..+  ++++|+.+.     +.|+..+|.++..
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----~~~--~~~~~~~~l-----~~~~~~fD~ii~~  109 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----VKN--VVEAKAEDL-----PFPSGAFEAVLAL  109 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----CSC--EEECCTTSC-----CSCTTCEEEEEEC
T ss_pred             CCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----ccc--ccccccccc-----ccccccccceeee
Confidence            568999999999999999977  679999999999999998753    232  567777653     2356778876643


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +.-     -+|-  ....++++++.++|||||.+++.+.+
T Consensus       110 ~~~-----~~~~--~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         110 GDV-----LSYV--ENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             SSH-----HHHC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cch-----hhhh--hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            210     0110  12247899999999999999997643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.38  E-value=1e-12  Score=113.26  Aligned_cols=100  Identities=15%  Similarity=0.232  Sum_probs=76.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||||||+|.++..++++.  .+|+|+|+|+++++.|+++..    .++.++++|+.+.      .++..+|.++..
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~------~~~~~fD~I~~~   88 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFEDA------QLPRRYDNIVLT   88 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGC------CCSSCEEEEEEE
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc----ccccccccccccc------cccccccccccc
Confidence            5689999999999999999874  579999999999999987642    4799999987653      145678877654


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHH-hcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~-~~LkpgG~l~~~~~~  266 (336)
                      ..-.|.        .....++.++. ++|+|||.+++.+.+
T Consensus        89 ~vleh~--------~d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          89 HVLEHI--------DDPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             SCGGGC--------SSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ceeEec--------CCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            211111        11247888887 789999999997754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.1e-12  Score=117.49  Aligned_cols=115  Identities=9%  Similarity=0.042  Sum_probs=78.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC----cEEEEecchhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT----NGYFIATNATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~----nv~~~~~d~~~~~d~ivsnpp~~~d~  222 (336)
                      ..+|||+|||+|.+++.||++  +.+|+|+|+|++|++.|+++....+..    +..+...++... +.-+. +...+|.
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~fd~  132 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL-DKDVP-AGDGFDA  132 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH-HHHSC-CTTCEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc-ccccC-CCCCceE
Confidence            468999999999999999988  579999999999999999998776543    244555665543 22221 2345776


Q ss_pred             EEeeCC-CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          223 VSIQCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       223 i~~~~~-dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +++.+. -.+..... ........++++++++|||||.+++.+.+
T Consensus       133 v~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         133 VICLGNSFAHLPDSK-GDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             EEECSSCGGGSCCTT-SSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEecCchhhcCCcc-cChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            654321 11100000 00112457999999999999999997654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=4e-12  Score=115.57  Aligned_cols=134  Identities=15%  Similarity=0.103  Sum_probs=95.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+|+.. ..+|+++|+|+.+++.|++|++.+|+. +++++++|+++.+.... .....+|.|++
T Consensus       146 g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~-~~~~~fD~Vi~  223 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ-KKGEKFDIVVL  223 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH-HTTCCEEEEEE
T ss_pred             CCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH-hccCCCCchhc
Confidence            6799999999999999999875 358999999999999999999999984 79999999987533322 12345677666


Q ss_pred             eCCCCCCCcch-hhhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HHHHHHHHHHHHHcCC
Q 019743          226 QCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGK  282 (336)
Q Consensus       226 ~~~dp~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~l~~~g~  282 (336)
                      ..|.-...... ....-.|.+++..+.++|+|||++++.+..     ....+.+.+...+.|.
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr  286 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGK  286 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCC
Confidence            53321111111 111234788999999999999999986532     2333445555555553

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.36  E-value=5.2e-12  Score=111.04  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|||||||+|.++..+++++|+.+++++|+ +++++.|+++++..+.. ++.+..+|.++.       .|..+|.+++
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-------~p~~~D~v~~  153 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-------LPVTADVVLL  153 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSCCEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-------ccccchhhhc
Confidence            46899999999999999999999999999997 78999999999888864 589998887542       2334676665


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ...-.      +-......++++++++.|||||++++.
T Consensus       154 ~~vLh------~~~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         154 SFVLL------NWSDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             ESCGG------GSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccc------ccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence            43211      100112248899999999999998883

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.9e-12  Score=111.89  Aligned_cols=107  Identities=12%  Similarity=-0.011  Sum_probs=78.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-----------------CCcEEEEecchhHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----------------ITNGYFIATNATST  208 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-----------------~~nv~~~~~d~~~~  208 (336)
                      .+.+|||+|||+|..+..||++  +.+|+|||+|+.|++.|+++.....                 ..++.++++|+...
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            3679999999999999999987  7899999999999999988754211                 13688999998654


Q ss_pred             HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          209 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       209 ~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      -    ..+...+|.++....-.+.      .....+.+++++.++|||||++++.+
T Consensus       123 ~----~~~~~~fd~i~~~~~l~~~------~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         123 P----RTNIGKFDMIWDRGALVAI------NPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             G----GSCCCCEEEEEESSSTTTS------CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c----ccccCceeEEEEEEEEEec------cchhhHHHHHHHHhhcCCcceEEEEE
Confidence            1    1134567776543222111      11234689999999999999988754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1e-12  Score=111.64  Aligned_cols=92  Identities=13%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.++..++      +++|+|+|+.|++.|+++       ++.++++|+.+.     ..++.++|.++..
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l-----~~~~~~fD~I~~~   98 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENL-----PLKDESFDFALMV   98 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBC-----CSCTTCEEEEEEE
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccc-----ccccccccccccc
Confidence            4579999999999988774      358999999999998763       588999998653     2356778887765


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..-.+..        ...++++++.++|+|||.+++..
T Consensus        99 ~~l~h~~--------d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          99 TTICFVD--------DPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCGGGSS--------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccc--------ccccchhhhhhcCCCCceEEEEe
Confidence            4322211        12489999999999999999955

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.35  E-value=2.3e-12  Score=104.36  Aligned_cols=106  Identities=19%  Similarity=0.243  Sum_probs=80.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||||.+++..+.+.. .+++++|+++.+++.+++|++.++..+ ++++++|+...++.    +...+|.+++
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~----~~~~fDiIf~   89 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVFL   89 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc----cccccceeEe
Confidence            67999999999999999888864 599999999999999999999988764 99999999875432    3455676655


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHH--HhcCcCCcEEEEEeCc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI  266 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~--~~~LkpgG~l~~~~~~  266 (336)
                      .   |....      ..+...++.+  .++|+|+|.+++++..
T Consensus        90 D---PPy~~------~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          90 D---PPYAK------ETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             C---CSSHH------HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             c---hhhcc------chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            3   32111      1223445544  3579999999998743

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=9.1e-12  Score=103.90  Aligned_cols=106  Identities=15%  Similarity=0.179  Sum_probs=80.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+|||++||||.+++..+.+.. .+|+.||+++.+++.+++|++..+..++.+++.|++..+.    .....+|.+++.
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~----~~~~~fDlIf~D  118 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA----QKGTPHNIVFVD  118 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS----SCCCCEEEEEEC
T ss_pred             hhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccc----ccccccCEEEEc
Confidence            57899999999999999888863 4899999999999999999999888899999999876532    223345665554


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHh--cCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~--~LkpgG~l~~~~~~  266 (336)
                      .|  + ..      ..+.+++..+.+  +|+++|.+++|+..
T Consensus       119 PP--Y-~~------~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         119 PP--F-RR------GLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             CS--S-ST------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             Cc--c-cc------chHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            22  2 11      133456666544  69999999998754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=2e-12  Score=113.82  Aligned_cols=119  Identities=13%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||+|||+|.+++.+|++. .++|+|+|+|+.+++.+++|++.+++++ ++++++|+.+.    .  +...+|.+.+
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~----~--~~~~~D~Ii~  180 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----P--GENIADRILM  180 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----C--CCSCEEEEEE
T ss_pred             ccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh----c--cCCCCCEEEE
Confidence            6799999999999999999874 5799999999999999999999999875 99999998753    1  2345777766


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------HHHHHHHHHHHHHcCCcc
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~l~~~g~~~  284 (336)
                      +.|  .          ....++..+.+.|++||++.+....      ....+.+.+.....|+..
T Consensus       181 ~~p--~----------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         181 GYV--V----------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             CCC--S----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             CCC--C----------chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence            432  1          1125777888899999999763211      122455666677778764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-11  Score=104.97  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=99.5

Q ss_pred             ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHH
Q 019743          111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n  189 (336)
                      .+.++|++-..+....+..                +..+|||||||+|..++.+|+..| +.+++++|++++..+.|+++
T Consensus        40 ~~~i~~~~g~lL~~L~~~~----------------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~  103 (219)
T d2avda1          40 DSMMTCEQAQLLANLARLI----------------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL  103 (219)
T ss_dssp             GGSCCHHHHHHHHHHHHHT----------------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHcc----------------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHH
Confidence            3556788877776655432                256899999999999999999875 78999999999999999999


Q ss_pred             HHHhCCCc-EEEEecchhHHHHhhhc-CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          190 LQLSGITN-GYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       190 ~~~~~~~n-v~~~~~d~~~~~d~ivs-npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +++.|..+ ++++.+|+.+.++..+. +.+..+|.+++.. +.          ..|...++.+.+.|+|||.+++
T Consensus       104 ~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~-dk----------~~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         104 WRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA-DK----------ENCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             HHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS-CS----------TTHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeC-CH----------HHHHHHHHHHHHHhcCCcEEEE
Confidence            99999864 99999999887655543 3455688777752 11          2456788899999999999998

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.30  E-value=5.1e-11  Score=107.59  Aligned_cols=116  Identities=9%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||++||+|.+++.+|... ...|+++|+|+.+++.|++|++.++++  +++++++|+++.+..... ....+|.|+
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~-~~~~fD~Ii  222 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDIII  222 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh-hcCCCCEEE
Confidence            5789999999999999888753 357999999999999999999999874  799999999875443332 123467666


Q ss_pred             eeCCCCCCCcch--hhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          225 IQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       225 ~~~~dp~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      +.-| .+.+.+.  ....-.+.++++.+.++|+|||.+++.+.
T Consensus       223 ~DPP-~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         223 IDPP-SFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             ECCC-CC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EcCh-hhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            5422 1111010  11112367899999999999999999664

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.29  E-value=2e-11  Score=109.27  Aligned_cols=115  Identities=10%  Similarity=0.061  Sum_probs=78.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||++||||.+++.+|+.  .++|++||.|+.+++.|++|++.+++.  +++|+++|+++.+..... ....+|.|+
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~-~~~~fD~Ii  209 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-RGSTYDIIL  209 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-HTCCBSEEE
T ss_pred             CCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh-cCCCCCEEE
Confidence            579999999999999999877  578999999999999999999999875  499999999864322111 111234333


Q ss_pred             eeCCCC--CCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          225 IQCPNP--DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       225 ~~~~dp--~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +.-|--  ..+.....-+..+..+++.+.++|+|||.+++.+
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            321100  0000001111234578888999999999766644

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.2e-11  Score=104.02  Aligned_cols=126  Identities=16%  Similarity=0.222  Sum_probs=95.0

Q ss_pred             cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHH
Q 019743          112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~  190 (336)
                      +.++|++-..+...++..+                ..+|||||||+|..++.+|+.. ++.+++++|+++++++.|++++
T Consensus        38 m~i~~~~G~lL~~lv~~~k----------------pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~  101 (214)
T d2cl5a1          38 MNVGDAKGQIMDAVIREYS----------------PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML  101 (214)
T ss_dssp             CSCHHHHHHHHHHHHHHHC----------------CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhhC----------------CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH
Confidence            5678999888888877543                4689999999999999999886 4689999999999999999999


Q ss_pred             HHhCCC-cEEEEecchhHHHHhhhc-CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          191 QLSGIT-NGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       191 ~~~~~~-nv~~~~~d~~~~~d~ivs-npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +..|+. +++++.+|+.+.+..+.. .....+|.+++.   .+     +. .......+.+..+.|+|||.+++
T Consensus       102 ~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD---~~-----~~-~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         102 NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLD---HW-----KD-RYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEEC---SC-----GG-GHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             HHcCCCccceeeeccccccccchhhcccccccceeeec---cc-----cc-ccccHHHHHHHhCccCCCcEEEE
Confidence            999985 599999999876443321 233457776664   22     00 01112345667789999998876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.1e-12  Score=114.56  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=85.6

Q ss_pred             cCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh
Q 019743          114 IGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  193 (336)
Q Consensus       114 igpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~  193 (336)
                      .|.-+...+..+++...-             .++.+|||||||+|.+++.+|+..+..+++|+|+|+.+++.|+++.++.
T Consensus       132 ~~e~~~~~~~~~~~~~~l-------------~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~  198 (328)
T d1nw3a_         132 YGETSFDLVAQMIDEIKM-------------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREF  198 (328)
T ss_dssp             CCCCCHHHHHHHHHHSCC-------------CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHcCC-------------CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            344555666666665431             2367999999999999999999988889999999999999998876542


Q ss_pred             ---------CCCcEEEEecchhHH-HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          194 ---------GITNGYFIATNATST-FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       194 ---------~~~nv~~~~~d~~~~-~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                               ...++.|+++|+.+. +...+.    ..+.++++.--.+         ......+.++.+.|||||+++.
T Consensus       199 ~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~----~advi~~~~~~f~---------~~~~~~l~e~~r~LKpGg~iv~  264 (328)
T d1nw3a_         199 RKWMKWYGKKHAEYTLERGDFLSEEWRERIA----NTSVIFVNNFAFG---------PEVDHQLKERFANMKEGGRIVS  264 (328)
T ss_dssp             HHHHHHHTCCCCCEEEEECCTTSHHHHHHHH----HCSEEEECCTTTC---------HHHHHHHHHHHTTCCTTCEEEE
T ss_pred             HHHhhhccccCCceEEEECcccccccccccC----cceEEEEcceecc---------hHHHHHHHHHHHhCCCCcEEEE
Confidence                     235799999998753 221111    1233333211000         0123678899999999999987

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.1e-12  Score=108.83  Aligned_cols=102  Identities=16%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCC-----CcEEEEecchhHHHHhhhcCCCCe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-----TNGYFIATNATSTFRSIVASYPGK  219 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~-----~nv~~~~~d~~~~~d~ivsnpp~~  219 (336)
                      ++.+|||||||||..+..||+. .|..+|+++|+++++++.|++|+++.+.     .++.+.++|+....   .  +...
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~---~--~~~~  150 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---A--EEAP  150 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC---G--GGCC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc---c--hhhh
Confidence            3679999999999999999986 5788999999999999999999987654     57899999986531   1  1235


Q ss_pred             EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      +|.|++....++              +.+.+.+.|||||++++..+.
T Consensus       151 fD~I~~~~~~~~--------------ip~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         151 YDAIHVGAAAPV--------------VPQALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             EEEEEECSBBSS--------------CCHHHHHTEEEEEEEEEEESC
T ss_pred             hhhhhhhcchhh--------------cCHHHHhhcCCCcEEEEEEcc
Confidence            788877643222              124466889999999996643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.27  E-value=2.9e-11  Score=104.03  Aligned_cols=127  Identities=14%  Similarity=0.171  Sum_probs=102.0

Q ss_pred             CcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHH
Q 019743          109 WEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCR  187 (336)
Q Consensus       109 ~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~  187 (336)
                      +..+.++|++-..+...++...                ..+||||||++|..++.+|+..| +.+++.+|++++..+.|+
T Consensus        38 ~~~m~~~~~~g~~L~~L~~~~~----------------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~  101 (227)
T d1susa1          38 WNIMTTSADEGQFLSMLLKLIN----------------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL  101 (227)
T ss_dssp             TGGGSCCHHHHHHHHHHHHHHT----------------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHhcC----------------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH
Confidence            4457778988887776665432                56899999999999999999875 689999999999999999


Q ss_pred             HHHHHhCCC-cEEEEecchhHHHHhhhcCC--CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          188 DSLQLSGIT-NGYFIATNATSTFRSIVASY--PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       188 ~n~~~~~~~-nv~~~~~d~~~~~d~ivsnp--p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +++++.|.. +++++.+|+.+.++.+..+.  ...+|.+++.   .+        ...|...++.+.+.|+|||.+++
T Consensus       102 ~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiD---a~--------k~~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         102 PVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVD---AD--------KDNYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             HHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEEC---SC--------STTHHHHHHHHHHHBCTTCCEEE
T ss_pred             HHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEec---cc--------hhhhHHHHHHHHhhcCCCcEEEE
Confidence            999999986 49999999998777665332  2357877765   21        12466889999999999999988

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=2.5e-12  Score=108.98  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH---HHHhhhcCCCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS---TFRSIVASYPG  218 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~---~~d~ivsnpp~  218 (336)
                      ++.+|||+|||||.+++.++.+. ..+|+|+|+|+.+++.|++|++.++. +..++.+|+..   .||.+++||||
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFNSRVDIVIMNPPF  119 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCCCCCSEEEECCCC
T ss_pred             CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhCCcCcEEEEcCcc
Confidence            36789999999999999988764 46899999999999999999988775 57899999876   37888888887

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.26  E-value=1.4e-11  Score=105.13  Aligned_cols=100  Identities=16%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||||..+..+|+.. +.+|+++|+++++++.|++|+++.+..|+.++++|...-+.     +...+|.|++
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-----~~~pfD~Iiv  151 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----PKAPYDVIIV  151 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             ccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-----ccCcceeEEe
Confidence            36799999999999999999875 46799999999999999999999999999999999865311     1233687776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-+.          +.    ..+.+.|+|||++++..+
T Consensus       152 ~~a~~~----------ip----~~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         152 TAGAPK----------IP----EPLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             CSBBSS----------CC----HHHHHTEEEEEEEEEEEC
T ss_pred             eccccc----------CC----HHHHHhcCCCCEEEEEEc
Confidence            532221          11    224467999999998654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=7.6e-11  Score=98.05  Aligned_cols=110  Identities=14%  Similarity=0.163  Sum_probs=82.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      ++.+|||++||||.+++..+.+. ...++++|.++.+++.+++|++..+.. +++++++|+...+.... +....+|.++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~-~~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY-EEKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH-HTTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhc-ccCCCcceEE
Confidence            36799999999999999999885 347999999999999999999988875 79999999987654432 2333467655


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHH--hcCcCCcEEEEEeCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  266 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~l~~~~~~  266 (336)
                      +.   |....      -.+...+..+.  .+|+++|.+++|++.
T Consensus       119 lD---PPY~~------~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         119 LD---PPYAK------QEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             EC---CCGGG------CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ec---hhhhh------hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            43   32111      12346666664  479999999998753

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.23  E-value=2.9e-12  Score=107.78  Aligned_cols=67  Identities=13%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH---HHHhhhcCCCC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS---TFRSIVASYPG  218 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~---~~d~ivsnpp~  218 (336)
                      ++.+|||+|||||.+++.++...+ .+|+|+|+++.+++.|++|+     .++.++++|+.+   .||.+++||||
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEISGKYDTWIMNPPF  117 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc-----ccccEEEEehhhcCCcceEEEeCccc
Confidence            367999999999999998887753 57999999999999999875     468899999875   37778888887

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=1.2e-10  Score=97.50  Aligned_cols=132  Identities=11%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~~~d~i~  224 (336)
                      ++..+||++||+|.++..+++.+|+++++|+|+++.|++.|+++.+..+ .++.+++++..+. +.++ ..+...+|.+.
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~-~~~~~~~~~~~vdgIl  100 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA-DFLLKTLGIEKVDGIL  100 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhH-HHHHHHcCCCCcceee
Confidence            3679999999999999999999999999999999999999999987654 5799999987653 2222 22345678776


Q ss_pred             eeCCCC--CCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc
Q 019743          225 IQCPNP--DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  280 (336)
Q Consensus       225 ~~~~dp--~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  280 (336)
                      +.+.-.  ..... ...-....+.+..+.++|+|||.+.+.+-...--..+.+.+.+.
T Consensus       101 ~DlGvSs~Qld~~-~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~  157 (192)
T d1m6ya2         101 MDLGVSTYQLKGE-NRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNS  157 (192)
T ss_dssp             EECSCCHHHHHTS-HTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHC
T ss_pred             eccchhHhhhhhh-hccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhc
Confidence            654321  10000 00112357889999999999999998664422223455555554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.9e-12  Score=110.58  Aligned_cols=135  Identities=12%  Similarity=0.016  Sum_probs=85.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE---------------------------
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY---------------------------  199 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~---------------------------  199 (336)
                      +.+|||||||+|.+++.++... ..+|+|+|+|+.|++.|+++++..+.....                           
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  130 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence            5689999999999988887664 347999999999999999998765432100                           


Q ss_pred             ---EEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------
Q 019743          200 ---FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------  267 (336)
Q Consensus       200 ---~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------  267 (336)
                         ....+.... ......++..+|.+...+.-.+..    .....+..+++++.++|||||.+++..-..         
T Consensus       131 ~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~  205 (257)
T d2a14a1         131 VKRVLKCDVHLG-NPLAPAVLPLADCVLTLLAMECAC----CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR  205 (257)
T ss_dssp             EEEEEECCTTSS-STTTTCCCCCEEEEEEESCHHHHC----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             hhcccccccccc-cccccccCCcccEEeehhhHHHhc----ccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccc
Confidence               000000000 000112345677766543211100    011235689999999999999999843110         


Q ss_pred             ------HHHHHHHHHHHHcCCcceee
Q 019743          268 ------EVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       268 ------~~~~~~~~~l~~~g~~~~~~  287 (336)
                            -..+.+.+.|++.||...++
T Consensus       206 ~~~~~~~~~~~~~~~l~~aGf~v~~~  231 (257)
T d2a14a1         206 EFSCVALEKGEVEQAVLDAGFDIEQL  231 (257)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHCCCEEEEE
Confidence                  12567888999999986655

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=7.7e-11  Score=106.55  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=76.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.+++.+|+.. ..+|+|+|.|+. ...|+++++.+++. ++.++++|+.+.     ..|+..+|.++.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~-----~~~~~~~D~ivs  106 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIIS  106 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHc-----ccccceeEEEee
Confidence            5789999999999999999874 357999999975 57788888888875 599999998763     224556777654


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .......     ......+.++..+.++|||||.++-
T Consensus       107 ~~~~~~l-----~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         107 EWMGYCL-----FYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CCCBBTB-----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeee-----ccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            3221110     0112356899999999999998863

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=7.9e-11  Score=109.29  Aligned_cols=122  Identities=12%  Similarity=0.067  Sum_probs=81.0

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  194 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~  194 (336)
                      |.-....+.++++...-             .++.++||||||+|.+++.+|+..+..+++|||+|+.|++.|+++++..+
T Consensus       198 GEl~~~~i~~Il~~l~L-------------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~  264 (406)
T d1u2za_         198 GELLPNFLSDVYQQCQL-------------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK  264 (406)
T ss_dssp             CCBCHHHHHHHHHHTTC-------------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCC-------------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence            44444556666654331             23679999999999999999999887799999999999999999987532


Q ss_pred             ---------CCcEEE-EecchhH--HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          195 ---------ITNGYF-IATNATS--TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       195 ---------~~nv~~-~~~d~~~--~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                               .....+ ..++...  .++..++  .  .+.++++.- .+  .      ......+.++.+.|||||+++.
T Consensus       265 ~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~--~--adVV~inn~-~f--~------~~l~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP--Q--CDVILVNNF-LF--D------EDLNKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             HHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG--G--CSEEEECCT-TC--C------HHHHHHHHHHHTTCCTTCEEEE
T ss_pred             hhhhhhccccccceeeeeechhhccccccccc--c--ceEEEEecc-cC--c------hHHHHHHHHHHHhcCCCcEEEE
Confidence                     122333 3444432  3455553  1  233333310 00  0      0124778899999999999886

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-10  Score=103.73  Aligned_cols=109  Identities=12%  Similarity=0.082  Sum_probs=76.2

Q ss_pred             CeEEEEeccccHHHHHHHHh----CCC--CeEEEEecChHHHHHHHHHHHHhC-CCcE--EEEecchhHHHHhh-hcCCC
Q 019743          148 PLVVDIGSGNGLFLLGMARK----RKD--LNFLGLEVNGKLVTHCRDSLQLSG-ITNG--YFIATNATSTFRSI-VASYP  217 (336)
Q Consensus       148 ~~vLDiGcGsG~~~~~la~~----~p~--~~v~giDis~~~l~~a~~n~~~~~-~~nv--~~~~~d~~~~~d~i-vsnpp  217 (336)
                      .+|||||||+|.++..+++.    +++  ..++|+|+|+.|++.|++++.... ..++  .+.+.++.+..+.. ...++
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            47999999999998887654    343  468999999999999999876532 3444  44555555432222 23356


Q ss_pred             CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ..+|.|+....-.|..        ....+++++.++|+|||.+++.+
T Consensus       122 ~~fD~I~~~~~l~~~~--------d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVK--------DIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCEEEEEEESCGGGCS--------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCC--------CHHHHHHHHHhhCCCCCEEEEEE
Confidence            6788887654332221        12489999999999999988854

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.2e-10  Score=105.73  Aligned_cols=103  Identities=15%  Similarity=0.300  Sum_probs=76.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.+++.+|+.. ..+|+|+|.|+ +++.|+++++.++.. ++.++++|+.+.     .-|+..+|.++.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l-----~~~~~~~D~i~s  111 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIIIS  111 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc-----cCcccceeEEEE
Confidence            5789999999999999888874 45899999996 678899998888864 699999998653     225566777655


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  261 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~  261 (336)
                      .......     ........++....++|||||.++
T Consensus       112 e~~~~~~-----~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         112 EWMGYFL-----LYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCCBTTB-----STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             Eecceee-----ccchhHHHHHHHHHhccCCCeEEE
Confidence            3222110     001234678888899999999885

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.2e-12  Score=110.15  Aligned_cols=137  Identities=12%  Similarity=0.012  Sum_probs=85.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-----------------------------
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-----------------------------  196 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-----------------------------  196 (336)
                      .+.++||||||+|.+++..+... -.+|+|+|+|+.|++.++++++.....                             
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            36799999999998876655554 348999999999999999886532210                             


Q ss_pred             -cEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC--------
Q 019743          197 -NGYFIATNATST--FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--------  265 (336)
Q Consensus       197 -nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~--------  265 (336)
                       ....+..|+...  ++ ....+++.+|.+...+.-.+.    +.....+++++++++++|||||.+++...        
T Consensus       133 ~~~~~~~~Dv~~~~~~~-~~~~~~~~fD~V~~~~~l~~i----~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~  207 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLG-AGSPAPLPADALVSAFCLEAV----SPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA  207 (263)
T ss_dssp             HEEEEECCCTTSSSTTC-SSCSSCSSEEEEEEESCHHHH----CSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE
T ss_pred             hhhccccccccCCCccc-cCCcCcCccCeeeeHHHHHHH----ccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc
Confidence             012223333221  00 011134467877665432211    01112357899999999999999988221        


Q ss_pred             -------cHHHHHHHHHHHHHcCCcceeee
Q 019743          266 -------IEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       266 -------~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                             ..--.+++.+.+.+.||..+...
T Consensus       208 ~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         208 GEARLTVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence                   00125688899999999865443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-10  Score=105.14  Aligned_cols=104  Identities=17%  Similarity=0.236  Sum_probs=75.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+|||||||+|.+++.+|+..+ .+|+|+|.|+.+.. |++++++++. .++.++++|+.+.     ..|+..+|.++.
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l-----~~~~~~~D~Ivs  108 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVIIS  108 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEEE
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHh-----cCccccceEEEE
Confidence            57899999999999999998853 58999999998865 5556656654 5799999998763     225566787765


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .......     ......+.++....++|+|||.++-
T Consensus       109 e~~~~~~-----~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         109 EWMGYFL-----LFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CCCBTTB-----TTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeec-----ccccccHHHHHHHHhcCCCCcEEec
Confidence            4322210     0112345778888899999998874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.12  E-value=1.1e-10  Score=100.16  Aligned_cols=97  Identities=20%  Similarity=0.209  Sum_probs=73.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ++.+|||||||||.++..||+.  ..+|+++|+++.+++.|+++..  ...|+.++++|...-+.   .  ...+|.|++
T Consensus        70 ~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~---~--~~pfD~Iiv  140 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYE---E--EKPYDRVVV  140 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCG---G--GCCEEEEEE
T ss_pred             ccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHh--cccccccccCchhhcch---h--hhhHHHHHh
Confidence            3679999999999999999988  4789999999999999998865  35799999999765311   1  123687776


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                      ...-++              +.+.+.+.|+|||++++..+
T Consensus       141 ~~a~~~--------------ip~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         141 WATAPT--------------LLCKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             SSBBSS--------------CCHHHHHTEEEEEEEEEEEC
T ss_pred             hcchhh--------------hhHHHHHhcCCCCEEEEEEc
Confidence            533221              12344578999999999654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=1.6e-10  Score=99.03  Aligned_cols=101  Identities=16%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC------CCCeEEEEecChHHHHHHHHHHHHh-----CCCcEEEEecchhHHHHhhhc
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR------KDLNFLGLEVNGKLVTHCRDSLQLS-----GITNGYFIATNATSTFRSIVA  214 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~------p~~~v~giDis~~~l~~a~~n~~~~-----~~~nv~~~~~d~~~~~d~ivs  214 (336)
                      ++.+|||||||||..+..||+..      +..+|+++|+++++++.|++|+...     +..|+.++++|......    
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~----  155 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP----  155 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc----
Confidence            36799999999999999888762      4568999999999999999987553     45689999999865311    


Q ss_pred             CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743          215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  265 (336)
Q Consensus       215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~  265 (336)
                       +...+|.|++...-+.              +-+.+.+.|||||++++..+
T Consensus       156 -~~~~fD~Iiv~~a~~~--------------~p~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         156 -PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPVG  191 (223)
T ss_dssp             -GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEES
T ss_pred             -cccceeeEEEEeechh--------------chHHHHHhcCCCcEEEEEEe
Confidence             1234688877643332              11345678999999998664

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=2.3e-10  Score=103.80  Aligned_cols=134  Identities=10%  Similarity=0.117  Sum_probs=90.4

Q ss_pred             CCeEEEEeccccHHHHHHHHh-----CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASY  216 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-----~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnp  216 (336)
                      ..+|||.|||||.+++.+..+     .++.+++|+|+++.+++.|+.|+..++.. ..+.++|...     .||.+++||
T Consensus       118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~vi~NP  196 (328)
T d2f8la1         118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLANLLVDPVDVVISDL  196 (328)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhccccccccccccccccccCC
Confidence            468999999999999998754     34568999999999999999999887754 5566777643     489999999


Q ss_pred             CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcCC
Q 019743          217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK  282 (336)
Q Consensus       217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g~  282 (336)
                      ||......-...... ..........+-.|++.+.+.|+|||++.+....    ......+++.+.+.+.
T Consensus       197 Py~~~~~~~~~~~~~-~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~  265 (328)
T d2f8la1         197 PVGYYPDDENAKTFE-LCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH  265 (328)
T ss_dssp             CCSEESCHHHHTTST-TCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             CCCCCccchhhhhcc-hhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCc
Confidence            995321000000000 0000011123457899999999999998775432    1234567777766643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=8.2e-09  Score=92.57  Aligned_cols=136  Identities=14%  Similarity=0.137  Sum_probs=100.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--C---CCcEEEEecchhHHHHhhhcCCCCeE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--G---ITNGYFIATNATSTFRSIVASYPGKL  220 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~---~~nv~~~~~d~~~~~d~ivsnpp~~~  220 (336)
                      +..+||.||.|.|..+..+++..|..+++++|++++.++.|++.....  +   -++++++.+|+.+.+..    .+..+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~y  152 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEERY  152 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCCE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh----cCCcc
Confidence            456899999999999999998888899999999999999999987542  1   24799999999886442    35568


Q ss_pred             EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HHHHHHHHHHHHHcCCcceee
Q 019743          221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      |.|++..+||+... .....++.++|++.+.+.|+|||.+++....     ......+.+.+.+. |..+..
T Consensus       153 DvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~  222 (312)
T d1uira_         153 DVVIIDLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRS  222 (312)
T ss_dssp             EEEEEECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEE
T ss_pred             cEEEEeCCCccccc-chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEE
Confidence            99888888875321 1234577789999999999999999885422     12233444555543 554433

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=8.6e-09  Score=94.28  Aligned_cols=126  Identities=18%  Similarity=0.191  Sum_probs=91.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||+.||+|.+++.||+.  ..+|+|+|+++.+++.|++|++.++++|+.|+++|..+.+.... +....+|.+.+.
T Consensus       213 ~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~-~~~~~~d~vilD  289 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP-WAKNGFDKVLLD  289 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-GGTTCCSEEEEC
T ss_pred             CceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh-hhhccCceEEeC
Confidence            568999999999999999987  57899999999999999999999999999999999876422111 112334655443


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  288 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~  288 (336)
                         |...      . . .+.++.+.+ ++|.-.+|+..+...++..+..+ .+.||....+.
T Consensus       290 ---PPR~------G-~-~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l-~~~gy~l~~i~  338 (358)
T d1uwva2         290 ---PARA------G-A-AGVMQQIIK-LEPIRIVYVSCNPATLARDSEAL-LKAGYTIARLA  338 (358)
T ss_dssp             ---CCTT------C-C-HHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHH-HHTTCEEEEEE
T ss_pred             ---CCCc------c-H-HHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHH-HHCCCeEeEEE
Confidence               4211      1 1 245555554 47888999988887777776654 46688765543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.85  E-value=8e-09  Score=85.57  Aligned_cols=108  Identities=12%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+|||+.||||.+++..+.+. ...++.||.+..+++..++|++..+..  ...+...|+...+.....  ...+|.++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~--~~~fDlIF  120 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN--QPHFDVVF  120 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS--SCCEEEEE
T ss_pred             cceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccccc--CCcccEEE
Confidence            5689999999999999999986 458999999999999999999988764  377778887654322111  22356554


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHH--hcCcCCcEEEEEeCc
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  266 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~l~~~~~~  266 (336)
                      +.   |....      ..+...++.+.  .+|+++|.+++|+..
T Consensus       121 lD---PPY~~------~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         121 LD---PPFHF------NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EC---CCSSS------CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ec---hhHhh------hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            43   32211      13446666664  479999999998754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=1.5e-08  Score=89.81  Aligned_cols=132  Identities=15%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +..+||-||.|.|..+..+++..|..+++++||++.+++.|++......    -++++++.+|+...+.    +.+..+|
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~----~~~~~yD  164 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----KFKNEFD  164 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----GCSSCEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh----cCCCCCC
Confidence            3569999999999999999988788899999999999999998765432    2579999999987643    3456789


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCcce
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~  285 (336)
                      .|.+..++|...   ....++..+|++.+.+.|+|||.+.+.+...    .....+.+.+.+. |..+
T Consensus       165 vIi~D~~dp~~~---~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v  228 (295)
T d1inla_         165 VIIIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT  228 (295)
T ss_dssp             EEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred             EEEEcCCCCCcC---chhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-ccee
Confidence            988888777521   2234778899999999999999999966532    2233444445444 4433

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.71  E-value=4.2e-08  Score=84.84  Aligned_cols=95  Identities=13%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.+++.+++++|+.+++..|+ |..++.+      ...++++++.+|.++.      -|.+  |.+++.
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~------~p~~--D~~~l~  146 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFAS------VPQG--DAMILK  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTC------CCCE--EEEEEE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCcccc------cccc--eEEEEe
Confidence            56899999999999999999999999999997 4444321      1246799999997542      1433  555443


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..-      |.-......++++.+++.|+|||++++
T Consensus       147 ~vL------h~~~de~~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         147 AVC------HNWSDEKCIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             SSG------GGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhh------hhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            111      110111235899999999999999888

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=6.6e-08  Score=85.09  Aligned_cols=130  Identities=10%  Similarity=0.130  Sum_probs=92.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh----------CCCcEEEEecchhHHHHhhhcC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----------GITNGYFIATNATSTFRSIVAS  215 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~----------~~~nv~~~~~d~~~~~d~ivsn  215 (336)
                      +..+||-||+|.|..+..+++. |..+++++||++++++.|++.....          .-++++++.+|+...+..    
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc----
Confidence            4578999999999999888764 5578999999999999998754211          235799999999876432    


Q ss_pred             CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCccee
Q 019743          216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKLV  286 (336)
Q Consensus       216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~~  286 (336)
                       ...+|.|++..++|..    ....++..+|++.+.+.|+|+|.+.+..+..    .....+.+.+.+. |..+.
T Consensus       147 -~~~yDvIi~D~~~~~~----~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~  215 (276)
T d1mjfa_         147 -NRGFDVIIADSTDPVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVY  215 (276)
T ss_dssp             -CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEE
T ss_pred             -cCCCCEEEEeCCCCCC----CcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCeeE
Confidence             2457888887777641    2234677899999999999999999865321    2233444445444 54443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=2.6e-07  Score=81.71  Aligned_cols=129  Identities=15%  Similarity=0.145  Sum_probs=99.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +..+||=||-|.|.++..+++..|..+++++||+++.++.|++......    -++++++.+|+...+.   ..+...+|
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~---~~~~~~yD  156 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK---NAAEGSYD  156 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH---TSCTTCEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh---hccccCcc
Confidence            4568999999999999999988777899999999999999998764321    3579999999987642   22345689


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHcC
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYG  281 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~g  281 (336)
                      .|++...+|..    ....++.++|++.+.+.|+|||.+.+.+..    ......+.+.+.+..
T Consensus       157 vIi~D~~dp~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  216 (290)
T d1xj5a_         157 AVIVDSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF  216 (290)
T ss_dssp             EEEECCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCCCCC----cchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence            88888777752    234578899999999999999999996643    234445556565553

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=1.2e-07  Score=83.18  Aligned_cols=127  Identities=13%  Similarity=0.193  Sum_probs=97.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-C---CCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-G---ITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~---~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +..+||-||-|.|..+..+.+..+..+++.+||+++.++.|++....+ +   -++++++.+|+...+    .+.+..+|
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l----~~~~~~yD  150 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI----AKSENQYD  150 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH----HTCCSCEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHH----hhcCCCCC
Confidence            457899999999999999998877889999999999999999886432 2   247999999998764    33456789


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHc
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  280 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~  280 (336)
                      .|.+..++|...    ...++.++|++.+.+.|+|+|.+......    ......+.+.+.+.
T Consensus       151 vIi~D~~~p~~~----~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~  209 (274)
T d1iy9a_         151 VIMVDSTEPVGP----AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (274)
T ss_dssp             EEEESCSSCCSC----CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCCc----chhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence            988887777521    12367889999999999999999986643    22334455555543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.62  E-value=6.2e-09  Score=88.32  Aligned_cols=126  Identities=16%  Similarity=0.145  Sum_probs=81.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCCe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPGK  219 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~  219 (336)
                      ++.+|||.|||+|.++..+.++. ....++|+|+++.++..+         .+..++++|...     .||.+++||||.
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~~~~fd~ii~npP~~   89 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGEAFDLILGNPPYG   89 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccccccccceecccCccc
Confidence            35789999999999999887764 456799999998765433         235667777754     478889999984


Q ss_pred             EEEEEeeCCCCCCCcchh------------hhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCC
Q 019743          220 LILVSIQCPNPDFNRPEH------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGK  282 (336)
Q Consensus       220 ~d~i~~~~~dp~~~~~~~------------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~  282 (336)
                      ....  ....+.......            .....+..|++.+.+.|+|||++.+.+...    ...+.+++.+.+...
T Consensus        90 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~  166 (223)
T d2ih2a1          90 IVGE--ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  166 (223)
T ss_dssp             CBSC--TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             cccc--cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCC
Confidence            3210  000111000000            011235788999999999999998865321    234566777766543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.5e-07  Score=79.12  Aligned_cols=102  Identities=17%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ...++|+|||.|.-++.+|-.+|+.+++.+|.+..-+...++-+...+++|+++++..+.+.    .  +...+|.+...
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----~--~~~~fD~V~sR  139 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF----P--SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS----C--CCSCEEEEECS
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh----c--cccccceehhh
Confidence            35899999999999999999999999999999999999999999999999999999998763    1  22345655442


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  266 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~  266 (336)
                      --.            -...+++-+.+.++++|.+++.-+.
T Consensus       140 A~~------------~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         140 AFA------------SLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CSS------------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             hhc------------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence            111            1358999999999999999997764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.60  E-value=9.8e-08  Score=84.95  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=89.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +..+||-||-|.|.++..+++..|..+++.+||+++.++.|++....+.    -++++++.+|+...+..    .+..+|
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~----~~~~yD  181 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEFD  181 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh----CCCCCC
Confidence            4568999999999999999987777899999999999999998764321    25799999999876432    455679


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHH
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLE  279 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~  279 (336)
                      .|.+..++|..    ....++.++|++.+.+.|+|||.++..+...    .....+.+.+.+
T Consensus       182 vII~D~~dp~~----~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~  239 (312)
T d2b2ca1         182 VIITDSSDPVG----PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRK  239 (312)
T ss_dssp             EEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCC----cchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhh
Confidence            88887777641    2234778899999999999999999966432    233445555554

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.6e-07  Score=82.87  Aligned_cols=126  Identities=13%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh----CCCcEEEEecchhHHHHhhhcCCCCeEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI  221 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~----~~~nv~~~~~d~~~~~d~ivsnpp~~~d  221 (336)
                      +..+||=||-|.|..+..+.+..+..+++.+||+++.++.|++....+    .-++++++.+|+...+.    +.+..+|
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~----~~~~~yD  153 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----QNQDAFD  153 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----TCSSCEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh----cCCCCCC
Confidence            456899999999999999998777889999999999999999876432    22579999999987644    2455689


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHH
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLE  279 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~  279 (336)
                      .|++...+|..    ....++.++|++.+.+.|+|||.+.+.+..    ......+.+.+.+
T Consensus       154 vIi~D~~~p~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~  211 (285)
T d2o07a1         154 VIITDSSDPMG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS  211 (285)
T ss_dssp             EEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCC----cccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHh
Confidence            88888777642    223467789999999999999999986532    2223344555554

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.59  E-value=2.4e-08  Score=85.83  Aligned_cols=59  Identities=20%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      ++.+|||||||+|.++..|++.  ..+++++|+++.+++.++++..  +.+|++++++|+.+.
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~   79 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQF   79 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGC
T ss_pred             CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhc
Confidence            3678999999999999999988  4689999999999999988764  346899999999863

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=1.3e-06  Score=74.72  Aligned_cols=125  Identities=15%  Similarity=0.091  Sum_probs=92.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+++|||||.|.-++.+|-.+|+.+++.+|.+..-+...+.-+.+.+++|+.+++..+...-..  ......+|.+...
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~--~~~~~~~D~v~sR  148 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--KDVRESYDIVTAR  148 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--TTTTTCEEEEEEE
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc--ccccccceEEEEh
Confidence            46899999999999999999999999999999999999998888899999999999988753110  0012345665543


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH--HHHHHHHHHHHHcCCcce
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--EVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~~~~  285 (336)
                      --.            -...+++-+...+++||.+++.-+..  +-.+...+.+...++...
T Consensus       149 Ava------------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~  197 (239)
T d1xdza_         149 AVA------------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE  197 (239)
T ss_dssp             CCS------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             hhh------------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence            111            12589999999999999999965532  222344455666666543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=2.9e-06  Score=69.55  Aligned_cols=130  Identities=12%  Similarity=0.099  Sum_probs=88.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~~~d~i~  224 (336)
                      ++..++|..||.|.++..+.+.  +.+|+|+|+++.+++.|++.    ...++.+++++..+. +..+ ......+|.+.
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~-~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHL-KRHLAALGVERVDGIL   90 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHH-HHHHHHcCCCccCEEE
Confidence            4678999999999999999886  57999999999999988653    346899999887654 2222 22234577776


Q ss_pred             eeCCCCCCCcchhhhh--cchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          225 IQCPNPDFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~--l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      +...-... .-....+  .+....+....+.|+|||.+.+.+-+..--..+.+.+.+.++.
T Consensus        91 ~DLGvSs~-qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          91 ADLGVSSF-HLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK  150 (182)
T ss_dssp             EECSCCHH-HHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred             EEccCCHH-HhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence            65321100 0000111  1245688999999999999998765433233577777777665

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.43  E-value=7.9e-07  Score=81.21  Aligned_cols=104  Identities=10%  Similarity=0.022  Sum_probs=80.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc---------------EEEEecchhHHHHh
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN---------------GYFIATNATSTFRS  211 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n---------------v~~~~~d~~~~~d~  211 (336)
                      +.+|||..||||..++..|++.+...|++.|+|+.+++.+++|++.|+..+               +.+.+.|+...+..
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            568999999999999999998877799999999999999999999987643               56777787654221


Q ss_pred             hhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE-eCc
Q 019743          212 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDI  266 (336)
Q Consensus       212 ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~-~~~  266 (336)
                          -...+|.|.+.   |.-         .-..|++.+.+.++.||.+.+. ||.
T Consensus       126 ----~~~~fDvIDiD---PfG---------s~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         126 ----RHRYFHFIDLD---PFG---------SPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             ----STTCEEEEEEC---CSS---------CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             ----hcCcCCcccCC---CCC---------CcHHHHHHHHHHhccCCEEEEEecCc
Confidence                23346765553   431         1137999999999999999993 443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.40  E-value=1.2e-07  Score=88.52  Aligned_cols=134  Identities=17%  Similarity=0.115  Sum_probs=89.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-------------CCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhH----
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRK-------------DLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATS----  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p-------------~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~----  207 (336)
                      ..+|+|-+||||.+.+.+.++..             ...++|+|+++.+...|+-|...++..  +..+.++|...    
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~~  242 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS  242 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhcc
Confidence            57899999999999998877531             235999999999999999999888764  35567777764    


Q ss_pred             -HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHHHHHHHHHHcC
Q 019743          208 -TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYG  281 (336)
Q Consensus       208 -~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~g  281 (336)
                       .||.+++||||.....  ...+...........-.+-.|++.+.+.|++||++.+.....     .....+++.+.+.+
T Consensus       243 ~~fD~Ii~NPPfg~~~~--~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~  320 (425)
T d2okca1         243 TLVDVILANPPFGTRPA--GSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF  320 (425)
T ss_dssp             SCEEEEEECCCSSCCCT--TCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred             cccceEEecCCCCCCcc--ccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence             4899999999953210  000000000000111224579999999999999988855321     12345666666654


Q ss_pred             C
Q 019743          282 K  282 (336)
Q Consensus       282 ~  282 (336)
                      .
T Consensus       321 ~  321 (425)
T d2okca1         321 N  321 (425)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=4.2e-06  Score=73.54  Aligned_cols=132  Identities=11%  Similarity=0.150  Sum_probs=92.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      .+.+|||+|+|.|.=+..+|....+..++++|+++..+...++++++.|..++.....|.... +. .  ++..+|.|.+
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~-~~-~--~~~~fd~IL~  177 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS-QW-C--GEQQFDRILL  177 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH-HH-H--TTCCEEEEEE
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc-hh-c--ccccccEEEE
Confidence            367999999999999999998887889999999999999999999999998877766654321 11 1  3456788776


Q ss_pred             eCCCC----CCCcchhh----------hhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          226 QCPNP----DFNRPEHR----------WRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       226 ~~~dp----~~~~~~~~----------~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      .-|-.    +.+.....          -...+.+++..+.+.|||||+++-.|-.   .+.-+-+.+.+++++
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~  250 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  250 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCC
Confidence            54321    11111110          0123689999999999999998886632   222234555566653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-06  Score=77.67  Aligned_cols=135  Identities=9%  Similarity=0.015  Sum_probs=82.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---------HHhhhcC
Q 019743          146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---------FRSIVAS  215 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---------~d~ivsn  215 (336)
                      .+.+|||+|+|.|.-+..+|.. .+...++++|+++..++..++|+++.|+.|+.+...|....         ||.|+-.
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~D  173 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD  173 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeec
Confidence            3678999999999999998876 46789999999999999999999999999999999987642         2333333


Q ss_pred             CCCeEEEEEeeCCCC-CCCcchhh--h--hcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743          216 YPGKLILVSIQCPNP-DFNRPEHR--W--RMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  281 (336)
Q Consensus       216 pp~~~d~i~~~~~dp-~~~~~~~~--~--~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  281 (336)
                      ||-+-..+.-..|+. |.......  .  .-.+.+++..+. .|+|||.++-.|-.   .+.-+-+...++.++
T Consensus       174 aPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~  246 (293)
T d2b9ea1         174 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQNP  246 (293)
T ss_dssp             CCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             CcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHhCC
Confidence            332211111111111 10000000  1  113467777777 47999988776632   222233444555443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.5e-07  Score=81.11  Aligned_cols=71  Identities=20%  Similarity=0.356  Sum_probs=58.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHH----HHhhhcCCCCe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST----FRSIVASYPGK  219 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~----~d~ivsnpp~~  219 (336)
                      ...|||||+|.|.++..|++.  ..+++++|+++.+++..+++...+.. .|+.++++|+...    ...+++|.||.
T Consensus        22 ~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~~~vV~NLPY~   97 (278)
T d1zq9a1          22 TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQ   97 (278)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGG
T ss_pred             CCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhhhhhhcchHHH
Confidence            568999999999999999988  46899999999999999988765433 5899999999763    23456777764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.32  E-value=8.9e-09  Score=89.11  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  208 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~  208 (336)
                      +..|||||||+|.++..|++.  ..+++|||+++.+++.++++..  ...|++++++|+++.
T Consensus        30 ~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~   87 (245)
T d1yuba_          30 TDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQF   87 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTT
T ss_pred             CCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcc
Confidence            568999999999999999998  5689999999999988876553  346899999999763

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.32  E-value=8.3e-07  Score=76.44  Aligned_cols=95  Identities=15%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.+++.+++++|+.+++..|. +..++.+.      ..++++++.+|.++.      -|.+  |.+++.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~------~p~a--D~~~l~  145 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTS------IPNA--DAVLLK  145 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTC------CCCC--SEEEEE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccC------CCCC--cEEEEE
Confidence            46899999999999999999999999999997 45544331      236799999997642      1333  544443


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCC---cEEEE
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFL  262 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg---G~l~~  262 (336)
                      ..-      |.-......++++++++.|+||   |++++
T Consensus       146 ~vL------Hdw~d~~~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         146 YIL------HNWTDKDCLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             SCG------GGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             eec------ccCChHHHHHHHHHHHHHcCcccCCcEEEE
Confidence            211      1101112358999999999998   66666

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.30  E-value=5.9e-06  Score=73.55  Aligned_cols=134  Identities=14%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      .+.+|||+|+|.|.=+..++... ....+++.|+++..+...++|+++.+..|+.....|.... +.    .+..+|.|.
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-~~----~~~~fD~IL  190 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GE----LNVEFDKIL  190 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-GG----GCCCEEEEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-cc----ccccccEEE
Confidence            36799999999999888888764 4678999999999999999999999999999988887653 11    234567776


Q ss_pred             eeCCC---------CCCCcchhh-----hhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcCCcc
Q 019743          225 IQCPN---------PDFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYGKGK  284 (336)
Q Consensus       225 ~~~~d---------p~~~~~~~~-----~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g~~~  284 (336)
                      +.-|-         |..+.....     -...+.+++..+.+.|||||.++-.|-.   .+.-+-+...++.+++..
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~  267 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL  267 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEE
Confidence            65331         111000000     1123689999999999999988876632   222233445556665543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.7e-07  Score=79.90  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +..|||||||+|.++..|++.  ..+++++|+++.+++..+++..  ...|++++++|+..
T Consensus        22 ~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~   78 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMT   78 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGG
T ss_pred             CCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhh
Confidence            568999999999999999987  4689999999999998876432  22589999999976

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.29  E-value=6.5e-07  Score=77.08  Aligned_cols=94  Identities=12%  Similarity=0.167  Sum_probs=65.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|||||||+|.+++.+++++|+.++++.|+.+ .++.+      ....++.++.+|.++.    +  |...+  .++.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~------~~~~r~~~~~~d~~~~----~--P~ad~--~~l~  146 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA------PSYPGVEHVGGDMFVS----I--PKADA--VFMK  146 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC------CCCTTEEEEECCTTTC----C--CCCSC--EECS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc------ccCCceEEeccccccc----C--CCcce--EEEE
Confidence            4689999999999999999999999999999854 33322      1235799999997542    1  43322  2221


Q ss_pred             C-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          227 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       227 ~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      . .--|       ......++++++++.|+|||++.+
T Consensus       147 ~vlh~~-------~d~~~~~iL~~~~~al~pgg~~li  176 (243)
T d1kyza2         147 WICHDW-------SDEHCLKFLKNCYEALPDNGKVIV  176 (243)
T ss_dssp             SSSTTS-------CHHHHHHHHHHHHHHCCSSSCEEE
T ss_pred             EEeecC-------CHHHHHHHHHHHHHhcCCCceEEE
Confidence            1 0011       011235899999999999998888

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.09  E-value=1.6e-06  Score=71.96  Aligned_cols=42  Identities=10%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             CCeEEEEeccccHHHHH----HHHh----CCCCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLG----MARK----RKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~----la~~----~p~~~v~giDis~~~l~~a~~  188 (336)
                      ..+|++.|||||.=..+    +...    ..+.+++|+|+|+.+++.|++
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            45899999999984433    3332    134579999999999999975

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.8e-06  Score=82.54  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhC----C--------------CCeEEEEecChHHHHHHHHHHHHhCCCc-----EEEEec
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR----K--------------DLNFLGLEVNGKLVTHCRDSLQLSGITN-----GYFIAT  203 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~----p--------------~~~v~giDis~~~l~~a~~n~~~~~~~n-----v~~~~~  203 (336)
                      +.+|+|-+||||.+.+...+..    .              ...++|+|+++.+...|+-|+..++...     -.+..+
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~  244 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  244 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhh
Confidence            5689999999999998876542    1              1258999999999999999987776431     123334


Q ss_pred             chh-------HHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----HHHH
Q 019743          204 NAT-------STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVML  271 (336)
Q Consensus       204 d~~-------~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~  271 (336)
                      +..       ..||.|++||||....-    .+.+.... ....-..-.|++.+.+.|++||++.+.+...     ....
T Consensus       245 ~~l~~d~~~~~kfD~Ii~NPPfg~~~~----~~~~~~~~-~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~  319 (524)
T d2ar0a1         245 NTLGSDGENLPKAHIVATNPPFGSAAG----TNITRTFV-HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT  319 (524)
T ss_dssp             CTTSHHHHTSCCEEEEEECCCCTTCSS----CCCCSCCS-SCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHH
T ss_pred             hhhhhcccccccceeEEecCCcccccc----ccchhhhc-cccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhH
Confidence            432       13899999999952210    00000000 0000112368999999999999988855322     1233


Q ss_pred             HHHHHHHHcCC
Q 019743          272 RMKQQFLEYGK  282 (336)
Q Consensus       272 ~~~~~l~~~g~  282 (336)
                      .+++.|.+.+.
T Consensus       320 ~iR~~Ll~~~~  330 (524)
T d2ar0a1         320 DIRRDLMDKCH  330 (524)
T ss_dssp             HHHHHHHHHEE
T ss_pred             HHHHHHHHcCC
Confidence            56666665543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.00  E-value=4.7e-06  Score=70.88  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHH
Q 019743          115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSL  190 (336)
Q Consensus       115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~  190 (336)
                      .|.....|.+.+.+.+                +.+||||||+.|..++.+|..    .++++++|+|+++.....+    
T Consensus        65 ~p~d~~~~~eli~~~K----------------Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~----  124 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELR----------------PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP----  124 (232)
T ss_dssp             CHHHHHHHHHHHHHHC----------------CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC----
T ss_pred             CHHHHHHHHHHHHHhC----------------CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh----
Confidence            3788888888887654                468999999999988777643    4689999999987644332    


Q ss_pred             HHhCCCcEEEEecchhH--HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          191 QLSGITNGYFIATNATS--TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       191 ~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                       ....++++++++|..+  .++.+-+ .+  .+.+++.  +.+.  ..+    ....+  ...+.|++||.++++-
T Consensus       125 -~~~~~~I~~i~gDs~~~~~~~~l~~-~~--~dlIfID--~~H~--~~~----v~~~~--~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         125 -ASDMENITLHQGDCSDLTTFEHLRE-MA--HPLIFID--NAHA--NTF----NIMKW--AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             -GGGCTTEEEEECCSSCSGGGGGGSS-SC--SSEEEEE--SSCS--SHH----HHHHH--HHHHTCCTTCEEEECS
T ss_pred             -hccccceeeeecccccHHHHHHHHh-cC--CCEEEEc--CCcc--hHH----HHHHH--HHhcccCcCCEEEEEc
Confidence             1234689999999753  2333222 22  2344443  1111  111    11122  2457999999999853

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00014  Score=58.97  Aligned_cols=131  Identities=14%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcC-CCCeEEE
Q 019743          147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVAS-YPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsn-pp~~~d~  222 (336)
                      ..+||||||+.|.++..+++. .+...++|+|+.+.           ....++.++++|....  .+.+..+ ....+|.
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~Dl   91 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcceeE
Confidence            678999999999999988876 46688999998762           2467899999998641  1111111 2334676


Q ss_pred             EEeeC-CCCCCCcc-hh-hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743          223 VSIQC-PNPDFNRP-EH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ  289 (336)
Q Consensus       223 i~~~~-~dp~~~~~-~~-~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  289 (336)
                      +.... |+..-... ++ ....+....+.-+.++|++||.+++..-.......+...+.. -|..+.+.+
T Consensus        92 VlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~-~F~~V~~~K  160 (180)
T d1ej0a_          92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRK  160 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEEC
T ss_pred             EEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh-hcCEEEEEC
Confidence            65543 22211111 11 111233566778889999999999965222223445555543 365555554

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.45  E-value=7.4e-06  Score=70.16  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=71.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhC----C------------------------------------CCeEEEEecChHHHHHH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR----K------------------------------------DLNFLGLEVNGKLVTHC  186 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~----p------------------------------------~~~v~giDis~~~l~~a  186 (336)
                      ...++|-.||||.+.+..|...    |                                    ...++|.|+++.+++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            3469999999999999877621    1                                    13478999999999998


Q ss_pred             ---HHHHHHhCCC-cEEEEecchhHH-----------HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHH
Q 019743          187 ---RDSLQLSGIT-NGYFIATNATST-----------FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS  251 (336)
Q Consensus       187 ---~~n~~~~~~~-nv~~~~~d~~~~-----------~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~  251 (336)
                         ++|++..|+. .+.+.+.|+++.           ...|++||||---   +.....       .....+.++...+.
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGER---l~~~~~-------~~~~~~~~~~~~l~  200 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER---THWEGQ-------VPGQPVAGLLRSLA  200 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS---SSSSSC-------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccc---cccccc-------chHHHHHHHHHHHH
Confidence               4688888876 488888988642           1357788887311   000000       00124568888888


Q ss_pred             hcCcCCcEEEEEeC
Q 019743          252 DLLVHDGKVFLQSD  265 (336)
Q Consensus       252 ~~LkpgG~l~~~~~  265 (336)
                      +.|..... ++.++
T Consensus       201 ~~~p~~s~-~~it~  213 (249)
T d1o9ga_         201 SALPAHAV-IAVTD  213 (249)
T ss_dssp             HHSCTTCE-EEEEE
T ss_pred             ccCCCCcE-EEEeC
Confidence            88854444 44454

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.0003  Score=62.44  Aligned_cols=59  Identities=14%  Similarity=0.063  Sum_probs=48.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      ++..|||||.|.|.++..|.+...-.+++++|+++..++..++...   -.|++++++|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhh
Confidence            4568999999999999999877423589999999999998876542   3579999999864

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.04  E-value=0.0012  Score=56.00  Aligned_cols=74  Identities=19%  Similarity=0.113  Sum_probs=56.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC---------CCcEEEEecchhHHHHhhhcCCC
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------ITNGYFIATNATSTFRSIVASYP  217 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~---------~~nv~~~~~d~~~~~d~ivsnpp  217 (336)
                      .++|||.-||.|.-+..+|..  +++|+++|.++......+.+.++..         ..|++++++|..+.+.    +..
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~----~~~  162 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT----DIT  162 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST----TCS
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh----ccC
Confidence            468999999999999999988  6899999999988777766654432         2379999999987643    233


Q ss_pred             CeEEEEEee
Q 019743          218 GKLILVSIQ  226 (336)
Q Consensus       218 ~~~d~i~~~  226 (336)
                      ..+|.|++.
T Consensus       163 ~~~DvIYlD  171 (250)
T d2oyra1         163 PRPQVVYLD  171 (250)
T ss_dssp             SCCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            446777764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.02  E-value=0.00025  Score=59.92  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=61.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      ..+|+|||||.|.++..++.+.+...+.|+++--+.-+. -......+..-+.+...+.      +..-|+...|.+...
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~d------v~~l~~~~~D~vlcD  139 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVD------VFFIPPERCDTLLCD  139 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCC------TTTSCCCCCSEEEEC
T ss_pred             CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccccccccchhhhh------HHhcCCCcCCEEEee
Confidence            568999999999999999988777788888873221000 0000011111134433322      122256667776655


Q ss_pred             CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743          227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      +........-...|  .-++++.+.++|+|||.|++..
T Consensus       140 m~ess~~~~vd~~R--tl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         140 IGESSPNPTVEAGR--TLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             CCCCCSSHHHHHHH--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCCCCCchhhhhh--HHHHHHHHHHHcccCCEEEEEE
Confidence            42111111001111  1267888899999999998864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.88  E-value=0.028  Score=45.35  Aligned_cols=111  Identities=12%  Similarity=0.088  Sum_probs=65.6

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-EecchhHHHHhhhcCCCCeEEEE
Q 019743          146 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       146 ~~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      .+.+||-+|||. |.++..+|+.....+++++|.++..++.|++    .|.+.+.. ...|+.+....+. + +..+|.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~i~~~t-~-g~g~D~v   98 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFEIADLSLDTPLHEQIAALL-G-EPEVDCA   98 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCEEEETTSSSCHHHHHHHHH-S-SSCEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----ccccEEEeCCCcCHHHHHHHHh-C-CCCcEEE
Confidence            367899999997 7788888888767799999999999998864    35432211 1233333222232 2 2234544


Q ss_pred             EeeCCCCCCCcchhh-hhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-....+.....+.. ...-....++.+.+.++|||++.+
T Consensus        99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~  138 (195)
T d1kola2          99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  138 (195)
T ss_dssp             EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence            322111100000000 001124788999999999999988

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.85  E-value=0.037  Score=43.18  Aligned_cols=96  Identities=14%  Similarity=0.182  Sum_probs=59.0

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecc----hhHHHHhhhcCCCCeEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN----ATSTFRSIVASYPGKLI  221 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d----~~~~~d~ivsnpp~~~d  221 (336)
                      +.+||=+||| .|.+++.+|+.. +++++++|.+++.++.|++    .+... .+...+    ..+..+.+-..-+..+|
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga~~-~~~~~~~~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGADV-TLVVDPAKEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSE-EEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCCcE-EEeccccccccchhhhhhhcccccCCc
Confidence            5678889998 677888888776 6899999999999988865    34332 222211    11111111111122234


Q ss_pred             EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      .++ ....             .+..++.+.+.|+|+|++.+
T Consensus       101 ~vi-d~~g-------------~~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2         101 VTI-DCSG-------------NEKCITIGINITRTGGTLML  127 (170)
T ss_dssp             EEE-ECSC-------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             eee-ecCC-------------ChHHHHHHHHHHhcCCceEE
Confidence            332 2111             13677888899999999998

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.77  E-value=0.017  Score=45.73  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=60.0

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec---chhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~---d~~~~~d~ivsnpp~~~d~  222 (336)
                      +..||=+|||. |..++.+|+..--.+|+++|.+++.++.|++    .|.+.  ++..   ++.+.+....  ...-+|.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~~--~i~~~~~~~~~~v~~~t--~g~G~D~   99 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGATD--ILNYKNGHIEDQVMKLT--NGKGVDR   99 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCSE--EECGGGSCHHHHHHHHT--TTSCEEE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCccc--cccccchhHHHHHHHHh--hccCcce
Confidence            45666689986 8888999987644579999999999888853    45443  2222   2222222221  1223565


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-....+              ..++++.+.|+|+|++.+
T Consensus       100 vid~~g~~--------------~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2         100 VIMAGGGS--------------ETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             EEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             EEEccCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            44332222              556778899999999998

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.77  E-value=0.0044  Score=53.62  Aligned_cols=45  Identities=22%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL  192 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~  192 (336)
                      ++..|||--||||..+.+..+.  +.+++|+|++++.++.|++++.+
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence            4689999999999998887766  78999999999999999887654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.017  Score=45.99  Aligned_cols=98  Identities=17%  Similarity=0.107  Sum_probs=60.8

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-EecchhHHHHhhhc-CCCCeEEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVA-SYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d~~~~~d~ivs-npp~~~d~i  223 (336)
                      +.+||=+||| .|.+++.+|+..--.+|+++|.+++.++.|++    .|.+.+-- -..+..+..+.+.. +.+..+|.+
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEECCCccchhheeccccccccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence            5788889998 47888889988733489999999999988854    45443211 11222222222221 123335654


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-....+              ..++.+.+.|++||++.+
T Consensus       105 id~vG~~--------------~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2         105 LEATGDS--------------RALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             EECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             eecCCch--------------hHHHHHHHHhcCCCEEEE
Confidence            4322212              456788899999999877

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.68  E-value=0.011  Score=49.36  Aligned_cols=44  Identities=25%  Similarity=0.353  Sum_probs=39.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ  191 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~  191 (336)
                      ++..|||-=||||..+.+..+.  +-+++|+|++++.++.|++++.
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence            4689999999999998887766  6899999999999999999875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.27  E-value=0.021  Score=48.14  Aligned_cols=46  Identities=13%  Similarity=0.108  Sum_probs=41.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh
Q 019743          146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  193 (336)
Q Consensus       146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~  193 (336)
                      ++..|||-=||||..+++..+.  +-+++|+|+++..++.|++++...
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4679999999999999888877  679999999999999999998753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.20  E-value=0.06  Score=42.28  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec---chhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~---d~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=+||| .|..++.+|+......++.+|.++..++.|++    .|...  ++..   |+.+....+.   +..+|.
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~~--~i~~~~~~~~~~i~~~t---~gg~D~   99 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATH--VINSKTQDPVAAIKEIT---DGGVNF   99 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHT---TSCEEE
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCeE--EEeCCCcCHHHHHHHHc---CCCCcE
Confidence            5677779997 45567778877666688899999998888864    45543  3332   2333222322   334665


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-...              ....++.+.+.++|+|++.+
T Consensus       100 vid~~G--------------~~~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2         100 ALESTG--------------SPEILKQGVDALGILGKIAV  125 (174)
T ss_dssp             EEECSC--------------CHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEcCC--------------cHHHHHHHHhcccCceEEEE
Confidence            443211              13677888999999999988

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.068  Score=41.69  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch-hHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~-~~~~d~ivsnpp~~~d~i~  224 (336)
                      +..|+=+||| .|.++..+|+...-.+++++|.+++.++.|++    .|.+.+.....+. .+....+-...+..+|.++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccccCCCCceEEE
Confidence            5678888997 45666777877644589999999999988854    4655433332222 1111111100122234332


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -...              .+..++.+.+.+++||++.+
T Consensus       103 d~~G--------------~~~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2         103 ECTG--------------AEASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             ECSC--------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             eccC--------------CchhHHHHHHHhcCCCEEEE
Confidence            2211              13678889999999999998

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.082  Score=41.34  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      +.+||=.|+  |.|..++.+|+.. ++++++++.|++..+.++    +.|.+.+--. ..|..+.+....  .+..+|.+
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~~~~i~~~t--~~~g~d~v  101 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHEVFNHREVNYIDKIKKYV--GEKGIDII  101 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSEEEETTSTTHHHHHHHHH--CTTCEEEE
T ss_pred             CCEEEEEecccccccccccccccc-Cccccccccccccccccc----ccCcccccccccccHHHHhhhhh--ccCCceEE
Confidence            568999996  5778888899887 789999999988777664    4566543211 122333222222  23445654


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-.               .-...++.+.+.|+|+|++.+
T Consensus       102 ~d~---------------~g~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2         102 IEM---------------LANVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             EES---------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec---------------ccHHHHHHHHhccCCCCEEEE
Confidence            322               113567888899999999987

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.53  E-value=0.12  Score=39.87  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+||=+|+| .|.+++.+|+.. +.+++++|.+++.++.++    +.|.+.+  +..+-.+..+.+........+.+ .
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~----~~Ga~~~--i~~~~~~~~~~~~~~~~g~~~~i-~   99 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELAR----KLGASLT--VNARQEDPVEAIQRDIGGAHGVL-V   99 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCSEE--EETTTSCHHHHHHHHHSSEEEEE-E
T ss_pred             CCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhh----ccCcccc--ccccchhHHHHHHHhhcCCcccc-c
Confidence            4566668987 567777788877 689999999999988775    3455432  22221111121211112222222 2


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ..              .....++.+.+.|+|+|++.+
T Consensus       100 ~~--------------~~~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2         100 TA--------------VSNSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             CC--------------SCHHHHHHHHTTEEEEEEEEE
T ss_pred             cc--------------ccchHHHHHHHHhcCCcEEEE
Confidence            11              113567888899999999987

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.16  E-value=0.13  Score=40.03  Aligned_cols=95  Identities=12%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-HHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-TFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-~~d~ivsnpp~~~d~i~  224 (336)
                      +..||=+|+|. |.+++.+|+..-..+++++|.+++.++.+++    .+.+.+--...|..+ ..+. .  .+..+|.++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~~~i~~~~~~~~~~~~~-~--~~~g~d~vi  105 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGADHVVDARRDPVKQVMEL-T--RGRGVNVAM  105 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCSEEEETTSCHHHHHHHH-T--TTCCEEEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccceeecCcccHHHHHHHh-h--CCCCceEEE
Confidence            56788899974 5566777777656789999999998887764    344432111122222 2221 1  233356543


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      -...              ....++.+.+.|+++|++.+
T Consensus       106 d~~g--------------~~~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2         106 DFVG--------------SQATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             ESSC--------------CHHHHHHGGGGEEEEEEEEE
T ss_pred             EecC--------------cchHHHHHHHHHhCCCEEEE
Confidence            3211              13678889999999999998

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.87  E-value=0.078  Score=41.74  Aligned_cols=95  Identities=14%  Similarity=0.151  Sum_probs=60.6

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-Eecc-hhH-HHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATN-ATS-TFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d-~~~-~~d~ivsnpp~~~d~  222 (336)
                      +..||=+|||. |.+++.+|+..-..+++.+|.++..++.|++    .|.+.+.. ...| ... ......   +.-+|.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~---~~G~d~  101 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT---AGGVDY  101 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH---TSCBSE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhh---cCCCcE
Confidence            56788899997 8899999998855689999999998877754    45543211 1112 111 111111   223444


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC-cEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~l~~  262 (336)
                      ++-...              .+..++++.+.|++| |++.+
T Consensus       102 vie~~G--------------~~~~~~~a~~~~~~g~G~~v~  128 (174)
T d1e3ia2         102 SLDCAG--------------TAQTLKAAVDCTVLGWGSCTV  128 (174)
T ss_dssp             EEESSC--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             EEEecc--------------cchHHHHHHHHhhcCCeEEEe
Confidence            332211              237788999999996 99988

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.43  E-value=0.19  Score=37.11  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=62.5

Q ss_pred             ccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCCCC
Q 019743          155 SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILVSIQCPNPDF  232 (336)
Q Consensus       155 cGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp~~  232 (336)
                      ||.|.++..+++...+..++.+|.+++..+.++.       .++.++.+|..+.  +..  .+-. ..+.+.+..++.. 
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~--a~i~-~A~~vi~~~~~d~-   74 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEK--ANVR-GARAVIVNLESDS-   74 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-------TTCEEEESCTTSHHHHHH--TTCT-TCSEEEECCSSHH-
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-------cCccccccccCCHHHHHH--hhhh-cCcEEEEeccchh-
Confidence            7889999999999878889999999998776532       2467899998653  221  1111 1233444433321 


Q ss_pred             CcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHH
Q 019743          233 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR  272 (336)
Q Consensus       233 ~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  272 (336)
                                ..-++....+.+.|...++..+....+.+.
T Consensus        75 ----------~n~~~~~~~r~~~~~~~iia~~~~~~~~~~  104 (129)
T d2fy8a1          75 ----------ETIHCILGIRKIDESVRIIAEAERYENIEQ  104 (129)
T ss_dssp             ----------HHHHHHHHHHHHCSSSCEEEECSSGGGHHH
T ss_pred             ----------hhHHHHHHHHHHCCCceEEEEEcCHHHHHH
Confidence                      113344455678899988888776554443

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.37  Score=41.27  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=71.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      ..+|+|+-||.|.+...+-...=+.+ +.++|+++.+++.-+.|.     .+..++..|+.+.-..-+.  ...+|.++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~--~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFD--RLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHH--HHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcC--CCCccEEEe
Confidence            35799999999999888766532223 679999999998887663     3455677777643111111  113454444


Q ss_pred             eCCCCCCCcchhh-----hh-cchHHHHHHHHhcC--cCCcEEEEEeC----cHHHHHHHHHHHHHcCCcceee
Q 019743          226 QCPNPDFNRPEHR-----WR-MVQRSLVEAVSDLL--VHDGKVFLQSD----IEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       226 ~~~dp~~~~~~~~-----~~-l~~~~~l~~~~~~L--kpgG~l~~~~~----~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      .+|-..+......     .| -....+++.+. .+  +|. .+++|--    .....+.+.+.|++.||.....
T Consensus        75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~-~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~  146 (343)
T d1g55a_          75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILP-RLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEF  146 (343)
T ss_dssp             CCC------------------CHHHHHHHHGG-GCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred             ecccccccccccccccccccccccchhhhhHh-hhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccccee
Confidence            4443222221111     11 12233444333 34  465 5666531    1123567888899999876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.74  E-value=0.26  Score=37.95  Aligned_cols=96  Identities=15%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             CCeEEEEec-c-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCCeEEEE
Q 019743          147 QPLVVDIGS-G-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGc-G-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~~~d~i  223 (336)
                      +..||=+|| | .|.+++.+++.....+++++|.+++.++.+++    .|.+.  ++..+-.+..+.+. .+.+..+|.+
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~~--~i~~~~~~~~~~~~~~~~~~~~d~v  101 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADY--VINASMQDPLAEIRRITESKGVDAV  101 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCce--eeccCCcCHHHHHHHHhhcccchhh
Confidence            567888996 3 56677777777656799999999998888864    45442  22222222111111 1134445654


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-...              ....++.+.+.|+|+|++.+
T Consensus       102 id~~g--------------~~~~~~~a~~~l~~~G~iv~  126 (170)
T d1jvba2         102 IDLNN--------------SEKTLSVYPKALAKQGKYVM  126 (170)
T ss_dssp             EESCC--------------CHHHHTTGGGGEEEEEEEEE
T ss_pred             hcccc--------------cchHHHhhhhhcccCCEEEE
Confidence            32211              13667788899999999987

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.29  E-value=0.67  Score=33.96  Aligned_cols=104  Identities=10%  Similarity=0.078  Sum_probs=59.9

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCC
Q 019743          155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILVSIQCPNP  230 (336)
Q Consensus       155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp  230 (336)
                      ||.|.++..+++..  .+..|+.+|.+++.++.+++.   .   ++.++++|+.+.  +...   .....+.+....++.
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---~~~vi~Gd~~~~~~l~~~---~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDA---GIEDADMYIAVTGKE   76 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHT---TTTTCSEEEECCSCH
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---hhhhccCcccchhhhhhc---ChhhhhhhcccCCcH
Confidence            56688888888753  467899999999988876542   1   357889998753  2221   112234443333332


Q ss_pred             CCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      .           ...++....+.+.+.-.+.. .....+    .+.+.+.|-.
T Consensus        77 ~-----------~N~~~~~~~k~~~~~~iI~~-~~~~~~----~~~l~~~G~d  113 (132)
T d1lssa_          77 E-----------VNLMSSLLAKSYGINKTIAR-ISEIEY----KDVFERLGVD  113 (132)
T ss_dssp             H-----------HHHHHHHHHHHTTCCCEEEE-CSSTTH----HHHHHHTTCS
T ss_pred             H-----------HHHHHHHHHHHcCCceEEEE-ecCHHH----HHHHHHCCCC
Confidence            1           11344445566777755544 333333    3355666654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.24  E-value=0.22  Score=44.45  Aligned_cols=52  Identities=19%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCC--CCeEEEEecChHHHHHHHHHHHHhCCC
Q 019743          145 PAQPLVVDIGSGNGLFLLGMARKRK--DLNFLGLEVNGKLVTHCRDSLQLSGIT  196 (336)
Q Consensus       145 ~~~~~vLDiGcGsG~~~~~la~~~p--~~~v~giDis~~~l~~a~~n~~~~~~~  196 (336)
                      .++.+++|+|+=.|..+..+++..+  ..+|+++|.++...+..++|++.+...
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            3567999999999999988877644  368999999999999999999877643

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.20  E-value=0.099  Score=46.13  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=18.1

Q ss_pred             hHHHHHHHHhcCcCCcEEEEEe
Q 019743          243 QRSLVEAVSDLLVHDGKVFLQS  264 (336)
Q Consensus       243 ~~~~l~~~~~~LkpgG~l~~~~  264 (336)
                      ...|++.=++-|+|||++++..
T Consensus       188 ~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         188 HALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHHHhcCCcEEEEEE
Confidence            4578888888999999999943

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=90.78  E-value=0.32  Score=39.81  Aligned_cols=81  Identities=14%  Similarity=0.074  Sum_probs=50.9

Q ss_pred             EEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCc-ch-------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHH
Q 019743          199 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE-------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  270 (336)
Q Consensus       199 ~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~-~~-------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  270 (336)
                      +++++|..+.+..+   |+.++|.++..-|  +... ..       ..-.......++++.++|+|+|.+++.... ...
T Consensus         6 ~i~~gDcle~l~~l---pd~sVdliitdPP--Y~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~-~~~   79 (256)
T d1g60a_           6 KIHQMNCFDFLDQV---ENKSVQLAVIDPP--YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP-FNC   79 (256)
T ss_dssp             SEEECCHHHHHHHS---CTTCEEEEEECCC--CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH-HHH
T ss_pred             EEEeccHHHHHhhC---cCCCcCEEEECCC--CCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc-hhh
Confidence            36788987765542   6677777665422  1110 00       011123467889999999999999886654 345


Q ss_pred             HHHHHHHHHcCCcce
Q 019743          271 LRMKQQFLEYGKGKL  285 (336)
Q Consensus       271 ~~~~~~l~~~g~~~~  285 (336)
                      ..+...+...||...
T Consensus        80 ~~~~~~~~~~g~~~~   94 (256)
T d1g60a_          80 AFICQYLVSKGMIFQ   94 (256)
T ss_dssp             HHHHHHHHHTTCEEE
T ss_pred             hhhhhhhhcccceee
Confidence            566677777787643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.29  E-value=0.11  Score=40.26  Aligned_cols=94  Identities=7%  Similarity=-0.023  Sum_probs=57.2

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+||-+|+| .|.+++.+|+.. +++++++|.|++.++.|++    .|.+.+ +-..+-.+.... .   ...+|.++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----lGa~~~-i~~~~~~~~~~~-~---~~~~d~vi~   97 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADHY-IATLEEGDWGEK-Y---FDTFDLIVV   97 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSEE-EEGGGTSCHHHH-S---CSCEEEEEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----cCCcEE-eeccchHHHHHh-h---hcccceEEE
Confidence            5688889998 778888888875 7899999999998888754    465432 111111111111 1   234565443


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ....+..            .-+..+.+.|+|+|++.+
T Consensus        98 ~~~~~~~------------~~~~~~~~~l~~~G~iv~  122 (168)
T d1piwa2          98 CASSLTD------------IDFNIMPKAMKVGGRIVS  122 (168)
T ss_dssp             CCSCSTT------------CCTTTGGGGEEEEEEEEE
T ss_pred             EecCCcc------------chHHHHHHHhhccceEEE
Confidence            2111110            112345678999999988

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.83  E-value=1  Score=32.85  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhh-hcCCCCeEEEEEeeCCC
Q 019743          155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSI-VASYPGKLILVSIQCPN  229 (336)
Q Consensus       155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~i-vsnpp~~~d~i~~~~~d  229 (336)
                      ||.|.++..+|+..  .+..|+.+|.+++.++.++.    .+   ...+.+|+.+.  +... +.    ..+.+.+..++
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~---~~~~~gd~~~~~~l~~a~i~----~a~~vi~~~~~   74 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA---THAVIANATEENELLSLGIR----NFEYVIVAIGA   74 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC---SEEEECCTTCTTHHHHHTGG----GCSEEEECCCS
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC---CcceeeecccchhhhccCCc----cccEEEEEcCc
Confidence            46677887777653  36789999999999887632    22   34567887542  2221 22    23444444444


Q ss_pred             CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          230 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       230 p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      ..           ...++-...+.+.+...++.......+    .+.|...|-.
T Consensus        75 ~~-----------~~~~~~~~~~~~~~~~~iiar~~~~~~----~~~l~~~Gad  113 (134)
T d2hmva1          75 NI-----------QASTLTTLLLKELDIPNIWVKAQNYYH----HKVLEKIGAD  113 (134)
T ss_dssp             CH-----------HHHHHHHHHHHHTTCSEEEEECCSHHH----HHHHHHHTCS
T ss_pred             hH-----------HhHHHHHHHHHHcCCCcEEeecccHhH----HHHHHHCCCC
Confidence            31           112333333445567788877765443    3344555654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=88.57  E-value=0.6  Score=39.73  Aligned_cols=127  Identities=13%  Similarity=0.063  Sum_probs=76.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743          147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  226 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~  226 (336)
                      +.+++|+-||-|.+...|-+.. --.+.++|+++.+++.-+.|..     +  ..++|+.+.-..-+   + .+|.++..
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG-~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~~---~-~~Dll~gg   78 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKTI---P-DHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGGS---C-CCSEEEEE
T ss_pred             CCeEEEECccccHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhhc---c-eeeeeecc
Confidence            5799999999999999887663 2246679999999999888752     1  12577765311111   1 35666666


Q ss_pred             CCCCCCCcch-----hhhh-cchHHHHHHHHhcCcCCcEEEEEe-------CcHHHHHHHHHHHHHcCCcceee
Q 019743          227 CPNPDFNRPE-----HRWR-MVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKLVL  287 (336)
Q Consensus       227 ~~dp~~~~~~-----~~~~-l~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~l~~~g~~~~~~  287 (336)
                      +|-..+....     ...+ -....+++.+ +.++|. .+++|-       ......+.+.+.|++.||.....
T Consensus        79 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i-~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~  150 (327)
T d2c7pa1          79 FPCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAK  150 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEE
T ss_pred             cccchhhhhhhhcCCcccchhHHHHHHHHH-hccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcceee
Confidence            6543222211     1112 1234444433 556775 455543       22335677888899999876543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.29  E-value=0.34  Score=37.55  Aligned_cols=94  Identities=13%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             CCeEEEEecc--ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-EecchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiGcG--sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      +..||=.|+|  .|.+++.+|+.. ++++++++.|++..+.+++    .|.+.+-- -..|+.+.+..+ .+ +..+|.+
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~-t~-g~g~d~v  101 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEI-TG-GKKVRVV  101 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHH-TT-TCCEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHH-hC-CCCeEEE
Confidence            4566666544  678889999886 6899999999998888753    46553311 123333333222 22 3334543


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                       +.....              ..+....+.|+++|++.+
T Consensus       102 -~d~~g~--------------~~~~~~~~~l~~~G~~v~  125 (179)
T d1qora2         102 -YDSVGR--------------DTWERSLDCLQRRGLMVS  125 (179)
T ss_dssp             -EECSCG--------------GGHHHHHHTEEEEEEEEE
T ss_pred             -EeCccH--------------HHHHHHHHHHhcCCeeee
Confidence             222111              345777889999999877

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.79  E-value=0.75  Score=35.26  Aligned_cols=95  Identities=12%  Similarity=0.096  Sum_probs=57.2

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec--c-hhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--N-ATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~--d-~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=.||| .|.+++.+|+..-..+|+++|.+++.++.+++    .|.+.+-....  + ........   -+.-+|.
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~---~~~g~D~  101 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEM---TDGGVDY  101 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHH---TTSCBSE
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHH---cCCCCcE
Confidence            5677777875 56677888888756789999999998887754    46543211111  1 11112221   1233454


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-...              ....++.+...+++||.+.+
T Consensus       102 vid~~G--------------~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2         102 SFECIG--------------NVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             EEECSC--------------CHHHHHHHHHTBCTTTCEEE
T ss_pred             eeecCC--------------CHHHHHHHHHhhcCCceeEE
Confidence            432211              13677888889999877665

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.24  E-value=1.3  Score=33.99  Aligned_cols=94  Identities=9%  Similarity=-0.022  Sum_probs=57.3

Q ss_pred             CCeEEEEe--ccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe-cchhHHHHhhhcCCCCeEEEE
Q 019743          147 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILV  223 (336)
Q Consensus       147 ~~~vLDiG--cGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~-~d~~~~~d~ivsnpp~~~d~i  223 (336)
                      +.+||=.|  .|.|.+++.+|+.. +++++++..+++-.+.++    +.|.+.+-... .|+.+.+-...  .+..+|.+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~~vi~~~~~~~~~~v~~~t--~~~g~d~v   98 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILELT--DGYGVDVV   98 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHHT--TTCCEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----cccccccccCCccCHHHHHHHHh--CCCCEEEE
Confidence            45666655  45788899999876 689999988887776664    34655432211 12222222211  23346654


Q ss_pred             EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      +-...               .+.++.+.+.|+++|+++.
T Consensus        99 ~d~~g---------------~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          99 LNSLA---------------GEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             EECCC---------------THHHHHHHHTEEEEEEEEE
T ss_pred             Eeccc---------------chHHHHHHHHhcCCCEEEE
Confidence            43211               1566778899999999887

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.04  E-value=2.3  Score=31.98  Aligned_cols=93  Identities=15%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEEE
Q 019743          147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVS  224 (336)
Q Consensus       147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i~  224 (336)
                      +.+||=.|||+ |.+++.+|+.. .++++++|.+++.++.+++    .|.+.+... ..|.........   +.. +.++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~---~~~-~~~v   98 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV---GGV-HAAV   98 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH---SSE-EEEE
T ss_pred             CCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc---CCC-ceEE
Confidence            45677788875 55556667664 6789999999998887754    454422111 112222222211   222 2222


Q ss_pred             eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ...              .....+..+.+.|+|+|++.+
T Consensus        99 ~~~--------------~~~~~~~~a~~~l~~~G~i~~  122 (168)
T d1rjwa2          99 VTA--------------VSKPAFQSAYNSIRRGGACVL  122 (168)
T ss_dssp             ESS--------------CCHHHHHHHHHHEEEEEEEEE
T ss_pred             eec--------------CCHHHHHHHHHHhccCCceEe
Confidence            221              113677888999999999998

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=1.4  Score=32.97  Aligned_cols=108  Identities=8%  Similarity=0.004  Sum_probs=60.5

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCC
Q 019743          155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILVSIQCPNP  230 (336)
Q Consensus       155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp  230 (336)
                      ||.|.++..+++..  .+..++.+|.+++......+...   ..++.++.+|..+.  +...-   -...+.+.+..++.
T Consensus         9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---~~~~~vi~Gd~~d~~~L~~a~---i~~a~~vi~~~~~d   82 (153)
T d1id1a_           9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAG---IDRCRAILALSDND   82 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHT---TTTCSEEEECSSCH
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---cCCcEEEEccCcchHHHHHhc---cccCCEEEEccccH
Confidence            56677777777642  36789999999875443333332   24688999998653  22211   11234444443332


Q ss_pred             CCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743          231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  283 (336)
Q Consensus       231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  283 (336)
                      .           .--.+....+.+.|.-.++.......+.+    .|++.|-.
T Consensus        83 ~-----------~n~~~~~~~r~~~~~~~iia~~~~~~~~~----~l~~~Gad  120 (153)
T d1id1a_          83 A-----------DNAFVVLSAKDMSSDVKTVLAVSDSKNLN----KIKMVHPD  120 (153)
T ss_dssp             H-----------HHHHHHHHHHHHTSSSCEEEECSSGGGHH----HHHTTCCS
T ss_pred             H-----------HHHHHHHHHHHhCCCCceEEEEcCHHHHH----HHHHCCCC
Confidence            1           11233444556778888888776554433    34555644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.35  E-value=0.63  Score=36.14  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS  189 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n  189 (336)
                      +..|+=+||| .|.+++.+++..-..+|+++|++++.++.|++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            5678888997 566777888877567999999999999988653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=3.1  Score=31.41  Aligned_cols=92  Identities=13%  Similarity=0.179  Sum_probs=57.1

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  225 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~  225 (336)
                      +.+||=+||| .|.+++.+|+.. +++++++|.+++.++.++    +.|.+.  ++...-......    .-..+|.++-
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~----~lGad~--~i~~~~~~~~~~----~~~~~D~vid   99 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAK----ALGADE--VVNSRNADEMAA----HLKSFDFILN   99 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH----HHTCSE--EEETTCHHHHHT----TTTCEEEEEE
T ss_pred             CCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHh----ccCCcE--EEECchhhHHHH----hcCCCceeee
Confidence            5667668997 578888889886 788899999998777664    446543  232222211111    1233565443


Q ss_pred             eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743          226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  263 (336)
Q Consensus       226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~  263 (336)
                      ....+              .-+....+.|+++|++.+.
T Consensus       100 ~~g~~--------------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         100 TVAAP--------------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             CCSSC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             eeecc--------------hhHHHHHHHHhcCCEEEEe
Confidence            32222              2345667899999999984

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=1.8  Score=35.54  Aligned_cols=60  Identities=13%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH
Q 019743          147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~  207 (336)
                      +.++|=.|+++| ++.++|+.+  .+++|+.+|.+++.++.+.+.++..+.. ++.++++|+.+
T Consensus        10 ~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~   72 (257)
T d1xg5a_          10 DRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN   72 (257)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC
Confidence            567888898877 344444432  3789999999999999988888776653 68889999854

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=84.10  E-value=3.2  Score=34.43  Aligned_cols=121  Identities=12%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeE-EEEEeeCCC
Q 019743          151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL-ILVSIQCPN  229 (336)
Q Consensus       151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~-d~i~~~~~d  229 (336)
                      +..=+||-.++..+.+.  +-+.+.+|+.++-.+..++|+.  +-.++++.+.|..+.+-..+  ||..- -.+.+   |
T Consensus        87 l~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~--~~~~~~v~~~DG~~~l~all--PP~~rRgLVLI---D  157 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPH--FNKKVYVNHTDGVSKLNALL--PPPEKRGLIFI---D  157 (271)
T ss_dssp             CCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCC--TTSCEEEECSCHHHHHHHHC--SCTTSCEEEEE---C
T ss_pred             cCcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhc--cCCCceEEcCchHHHHHhhC--CCCCCceEEEe---c
Confidence            35678999888877654  7789999999998888776653  33679999999988766666  44432 22222   4


Q ss_pred             CCCCcchhhhhcchHHHHHHHHhcCc--CCcEEEEEe--CcHHHHHHHHHHHHHcCCcce
Q 019743          230 PDFNRPEHRWRMVQRSLVEAVSDLLV--HDGKVFLQS--DIEEVMLRMKQQFLEYGKGKL  285 (336)
Q Consensus       230 p~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~l~~~~--~~~~~~~~~~~~l~~~g~~~~  285 (336)
                      |.+...     ..|.++++.+.+.++  |.|.+.+-.  -.....+.+.+.+.+.+....
T Consensus       158 PpYE~k-----~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~l  212 (271)
T d2oo3a1         158 PSYERK-----EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSV  212 (271)
T ss_dssp             CCCCST-----THHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEE
T ss_pred             CCcCCH-----HHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccce
Confidence            432222     234566666666665  789888732  234456677777777776543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=83.79  E-value=3.4  Score=31.64  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          146 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       146 ~~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +..+|+=||+| .|..++..|+.. +++|+.+|.+++.++..+....    .++.....+-..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~   88 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAE   88 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhh
Confidence            35789999999 678888888887 7999999999999887765432    346666665543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=83.53  E-value=1.7  Score=33.53  Aligned_cols=93  Identities=13%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             CCeEEEEecc--ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecc--hhHHHHhhhcCCCCeEEE
Q 019743          147 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVASYPGKLIL  222 (336)
Q Consensus       147 ~~~vLDiGcG--sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d--~~~~~d~ivsnpp~~~d~  222 (336)
                      +.+||=.|.|  -|..++.+|+.. .++++++..+++..+.++    ..|.+.+ +...+  ..+...... + +.-+|.
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~----~~Ga~~v-i~~~~~~~~~~~~~~~-~-~~Gvd~  101 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFDAA-FNYKTVNSLEEALKKA-S-PDGYDC  101 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSEE-EETTSCSCHHHHHHHH-C-TTCEEE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHH----hhhhhhh-cccccccHHHHHHHHh-h-cCCCce
Confidence            5677766764  467888889887 689999999988776664    3455543 22222  222211112 2 233554


Q ss_pred             EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743          223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  262 (336)
Q Consensus       223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~  262 (336)
                      ++-.               .-.+.+++..+.|+++|++.+
T Consensus       102 v~D~---------------vG~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2         102 YFDN---------------VGGEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             EEES---------------SCHHHHHHHGGGEEEEEEEEE
T ss_pred             eEEe---------------cCchhhhhhhhhccCCCeEEe
Confidence            4321               113677899999999999988

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=82.67  E-value=0.92  Score=39.62  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-------CCCeEEEEecChHHHHHHHH
Q 019743          116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-------KDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-------p~~~v~giDis~~~l~~a~~  188 (336)
                      |+....+..++...-    .-.|... ..+..-.|+|+|+|+|.++..+....       ...+++-+|+|+...+.-++
T Consensus        54 p~is~~Fg~~ia~~~----~~~~~~~-~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          54 PEISQMFGELLGLWS----ASVWKAA-DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             HHHCHHHHHHHHHHH----HHHHHHT-TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH----HHHHHHh-CCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            655566666665321    1122221 12234579999999999988776542       24579999999987666655


Q ss_pred             HHHHhCCCcEEEE
Q 019743          189 SLQLSGITNGYFI  201 (336)
Q Consensus       189 n~~~~~~~nv~~~  201 (336)
                      +..  ...+++++
T Consensus       129 ~l~--~~~~i~w~  139 (365)
T d1zkda1         129 LLA--GIRNIHWH  139 (365)
T ss_dssp             HST--TCSSEEEE
T ss_pred             Hhc--ccccceec
Confidence            543  33456554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=82.21  E-value=7  Score=31.74  Aligned_cols=58  Identities=16%  Similarity=0.103  Sum_probs=44.0

Q ss_pred             CCeEEEEecccc---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743          147 QPLVVDIGSGNG---LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  207 (336)
Q Consensus       147 ~~~vLDiGcGsG---~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~  207 (336)
                      +.++|=.|+.+|   .++..++++  +++|+.++.+++.++.+.+.....+ .++.++.+|+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~D~s~   66 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLS   66 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEeecCC
Confidence            567788888766   244445555  7899999999999998888887766 468888899853

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.43  E-value=2.2  Score=32.53  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743          147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  188 (336)
Q Consensus       147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~  188 (336)
                      +..||=+|+| .|.+++.+++..-..+|+++|.+++..+.+++
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence            5678888886 44566777777767899999999999888754