Citrus Sinensis ID: 020079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MIHSMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVEFC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccccccEEEEccEEEccccEEEEEEEEEccEEEEEEcccccccccEEEEccccEEEEcccccccccccccccccccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHEcccccccccccEEccccccccccccccccccEEEEccEEEEccEEEEcEEEEcccEccEEEcccccccccEEEEccccEEEEcEEEEEEccccEEccEEccccHHHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccEEEcccHHHHccccEEEEccccc
Coil and Loop (DISEMBL)
MIHSMASAFTHQLTSVALLLLLLyfppisesnnlfcdagseyggpqcgiqssskilikggtvvnaHHQQIADVYVEDGIVvavqpninvgddvkvldatgkfvmpggidphtHLAMEFmgsetiddfFSGQaaalaggttmhidfvipingsltaGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELgitgpeghalsrppllegeaTTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKagpnflnttiplcdscsniirmvefc
Flexible Loop (DISEMBL)
MIHSMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQpninvgddVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGItgpeghalsrppLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGpnflnttiplcdscsnIIRMVEFC
Low Complexity Region (SEG)
MIHSMASAFTHQLTSVAllllllYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWdevvsdemevmvkekGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVEFC
Disordered region (IsUnstruct)
*******AFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE********LLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVE**
Disordered Region (DISOPRED)
******SAFTHQLTSVALLLLLLYFP****************************ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVEFC
Disordered Region (DISEMBL)
********FTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVEFC
Disordered Region (DISPRO)
*IHSMASAFTHQLTSVALLLLLLYFPPISESNNL*CD*************SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVEFC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHSMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVEFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q55DL0	503	Dihydropyrimidinase OS=Di	yes	no	0.779	0.512	0.561	3e-77
Q9EQF5	519	Dihydropyrimidinase OS=Mu	yes	no	0.767	0.489	0.534	3e-76
Q14117	519	Dihydropyrimidinase OS=Ho	yes	no	0.782	0.499	0.532	2e-74
Q63150	519	Dihydropyrimidinase OS=Ra	yes	no	0.767	0.489	0.519	4e-73
Q59699	495	D-hydantoinase/dihydropyr	yes	no	0.791	0.529	0.501	5e-73
Q9I676	479	D-hydantoinase/dihydropyr	yes	no	0.764	0.528	0.507	2e-70
Q6GL72	571	Dihydropyrimidinase-relat	no	no	0.776	0.450	0.505	4e-68
O13022	571	Dihydropyrimidinase-relat	N/A	no	0.776	0.450	0.505	7e-68
Q640K6	571	Dihydropyrimidinase-relat	N/A	no	0.776	0.450	0.501	2e-67
Q62952	570	Dihydropyrimidinase-relat	no	no	0.776	0.450	0.501	5e-67

>sp|Q55DL0|DPYS_DICDI Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1

 Score =  288 bits (738), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/262 (56%), Positives = 186/262 (70%), Gaps = 4/262 (1%)

Query: 49  IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
           +  +  ILIK GTVVN      +DV VE+GI+  +  NI   + +KV+DAT K ++PGGI
Sbjct: 4   VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63

Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
           D HTH  + FMG+ ++DDF  G  AA+AGGTT  IDFVIP  G SL   ++ ++K A  K
Sbjct: 64  DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123

Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
            +C DY  H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ +   FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182

Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
            LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP  LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242

Query: 286 LYVVHVMSMDAMEEIAKARKAG 307
           +Y+VHV S+ A + I K RK G
Sbjct: 243 VYIVHVQSIGAADVICKHRKEG 264

Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 2

>sp|Q9EQF5|DPYS_MOUSE Dihydropyrimidinase OS=Mus musculus GN=Dpys PE=2 SV=2

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/260 (53%), Positives = 181/260 (69%), Gaps = 6/260 (2%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
           ++LI+GG +VN    Q+ADV VEDG+V A+  ++   +D    +++LDA GK V+PGGID
Sbjct: 6   RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65

Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
            HTH+   FMGS+++DDF+ G  AALAGGTTM IDF IP  GS L   FE +   A    
Sbjct: 66  THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125

Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
           C DY  H+A+T W + V +EM+ + ++KG+NSFK FMAYKG +M+ DE L   F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185

Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
           GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245

Query: 288 VVHVMSMDAMEEIAKARKAG 307
           VVHVMS  A + +A AR+AG
Sbjct: 246 VVHVMSKSAAKVVADARRAG 265

Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 2

>sp|Q14117|DPYS_HUMAN Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1

 Score =  279 bits (714), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/265 (53%), Positives = 179/265 (67%), Gaps = 6/265 (2%)

Query: 49  IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVM 104
           + + S++LI+GG VVN    ++ADV VEDG+V A+     P       ++VLDA GK V+
Sbjct: 1   MAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVL 60

Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
           PGGID HTH+   FMGS +IDDF  G  AAL+GGTTM IDF IP  G SL   FE +   
Sbjct: 61  PGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSW 120

Query: 164 AKNS-CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
           A    C DY  H+A+T W + V +EM+++V++KG+NSFK FMAYK  +M+ D  L E F 
Sbjct: 121 ADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS 180

Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
           RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  V
Sbjct: 181 RCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAV 240

Query: 283 NTPLYVVHVMSMDAMEEIAKARKAG 307
           N PLY+VHVMS  A + IA AR+ G
Sbjct: 241 NCPLYIVHVMSKSAAKVIADARRDG 265

Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 2

>sp|Q63150|DPYS_RAT Dihydropyrimidinase OS=Rattus norvegicus GN=Dpys PE=1 SV=2

 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/260 (51%), Positives = 176/260 (67%), Gaps = 6/260 (2%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVMPGGID 109
           ++LI+GG VVN    Q+ADV VEDG+V A+     P  +    +++LDA GK V+PGGID
Sbjct: 6   RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65

Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
            HTH+   FMGS+++DDF  G  AALAGGTTM IDF IP  GS L   FE +   A    
Sbjct: 66  THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125

Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
           C DY  H+A+T W + V +EM+ + ++KG+NSFK FMAYK  +M+ D+ +   F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185

Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
           GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245

Query: 288 VVHVMSMDAMEEIAKARKAG 307
           +VHVMS  A + IA A++ G
Sbjct: 246 IVHVMSKSAAKVIADAKREG 265

Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 2

>sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase OS=Pseudomonas putida GN=dht PE=1 SV=2

 Score =  275 bits (702), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 176/263 (66%), Gaps = 1/263 (0%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LI+G TVV       ADV   DG++ A+ PN+    D ++LD +G+++MPGGIDPHTH+
Sbjct: 3   LLIRGATVVTHEESYPADVLCVDGLIRAIGPNLEPPTDCEILDGSGQYLMPGGIDPHTHM 62

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
            + FMG+   +DFFSG AA LAGGTT  IDFVIP    SL   F  +   A+ S  DYGF
Sbjct: 63  QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPQQSLLEAFHTWRGWAQKSASDYGF 122

Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
           H+AIT W E V++EM  +V + G+NSFK FMAYK + M  D+ L+  F+RC  LGA+  V
Sbjct: 123 HVAITWWSEQVAEEMGELVAKHGVNSFKHFMAYKNAIMAADDTLVASFERCLQLGAVPTV 182

Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
           HAENG+ V+  QK+++  G+TGPE H LSRP  +EGEA +RAIR+AE + TPLYVVH+ S
Sbjct: 183 HAENGELVYHLQKKLLAQGMTGPEAHPLSRPSQVEGEAASRAIRIAETIGTPLYVVHISS 242

Query: 294 MDAMEEIAKARKAGPNFLNTTIP 316
            +A++EI  AR  G       +P
Sbjct: 243 REALDEITYARAKGQPVYGEVLP 265

Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids.

Pseudomonas putida (taxid: 303)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9I676|HYDA_PSEAE D-hydantoinase/dihydropyrimidinase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dht PE=3 SV=1

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/254 (50%), Positives = 171/254 (67%), Gaps = 1/254 (0%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LI+G TVV       ADV   +G++ A+  N+       VLD  G+++MPGGIDPHTH+
Sbjct: 3   LLIRGATVVTHEESYRADVLCANGLIQAIGENLETPSGCDVLDGGGQYLMPGGIDPHTHM 62

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
            + FMG+   +DFFSG AA LAGGTT  IDFVIP    SL   F  +   A+ S  DYGF
Sbjct: 63  QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPRQSLLEAFHTWRGWAQKSAADYGF 122

Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
           H+AIT W + V+ EM  +V + G+NSFK FMAYK + M  D+ L+  F+RC  LGA+  V
Sbjct: 123 HVAITWWSDEVAREMGELVAQHGVNSFKHFMAYKNAIMAADDTLVASFERCLELGAVPTV 182

Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
           HAENG+ VF  Q++++  G+TGPE H LSRPP +EGEA +RAIR+AE + TPLY+VH+ S
Sbjct: 183 HAENGELVFHLQQKLLAQGLTGPEAHPLSRPPQVEGEAASRAIRIAETLGTPLYLVHISS 242

Query: 294 MDAMEEIAKARKAG 307
            +A++EIA AR  G
Sbjct: 243 REALDEIAYARAKG 256

Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 2

>sp|Q6GL72|DPYL3_XENTR Dihydropyrimidinase-related protein 3 OS=Xenopus tropicalis GN=dpysl3 PE=2 SV=1

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/259 (50%), Positives = 172/259 (66%), Gaps = 2/259 (0%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LIKGG +VN      AD+Y+EDG++  +  N+ V   VK ++A GK V+PGGID 
Sbjct: 13  TSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDV 72

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
           HTHL M + G  T+DDFF G  AALAGGTTM +D VIP    SLT  FE + + A   +C
Sbjct: 73  HTHLQMPYRGMTTVDDFFQGTKAALAGGTTMIVDHVIPEPEASLTEAFEKWREWADGKTC 132

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ IT W++ V  E+E +VK+KG+NSF  +MAYK  + +++  L E F     LG
Sbjct: 133 CDYSLHVDITHWNDSVKQEVEALVKQKGVNSFMVYMAYKDLYQMSNTELYEVFTFLGGLG 192

Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD + + Q RM+ELGITGPEGH LSRP  LE EA  RAI +A   N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQNRMLELGITGPEGHVLSRPEELEAEAVFRAITIASQTNCPLYV 252

Query: 289 VHVMSMDAMEEIAKARKAG 307
             VMS  +++ I++ARK G
Sbjct: 253 TKVMSKSSVDLISQARKKG 271

Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration.

Xenopus tropicalis (taxid: 8364)

>sp|O13022|DPY3A_XENLA Dihydropyrimidinase-related protein 3-A OS=Xenopus laevis GN=dpysl3-a PE=2 SV=2

 Score =  257 bits (657), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 131/259 (50%), Positives = 171/259 (66%), Gaps = 2/259 (0%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LIKGG +VN      AD+Y+EDG++  +  N+ V   VK ++A GK V+PGGID 
Sbjct: 13  TSERLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDV 72

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
           HTHL M + G  T+DDF  G  AALAGGTTM +D VIP    SLT  FE + + A   +C
Sbjct: 73  HTHLQMPYRGMTTVDDFLQGTKAALAGGTTMIVDHVIPEPEASLTEAFEKWREWADGKTC 132

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ IT W + V  E+E +VK+KG+NSF  +MAYK  + +++  L E F    SLG
Sbjct: 133 CDYSLHVDITHWSDSVKQEVETLVKQKGVNSFMVYMAYKDLYQMSNTELYEIFTFLGSLG 192

Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD + + Q RM+ELGITGPEGH LSRP  LE EA  RAI +A   N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQNRMLELGITGPEGHVLSRPEELEAEAVFRAITIASQTNCPLYV 252

Query: 289 VHVMSMDAMEEIAKARKAG 307
             VMS  +++ I++ARK G
Sbjct: 253 TKVMSKSSVDLISQARKKG 271

Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration.

Xenopus laevis (taxid: 8355)

>sp|Q640K6|DPY3B_XENLA Dihydropyrimidinase-related protein 3-B OS=Xenopus laevis GN=dpysl3-b PE=2 SV=1

 Score =  256 bits (653), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/259 (50%), Positives = 170/259 (65%), Gaps = 2/259 (0%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LIKGG +VN      AD+Y+EDG++  +  N+ V   VK ++A GK V+PGGID 
Sbjct: 13  TSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDV 72

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
           HTHL M + G  T+DDFF G  AALAGGTTM +D VIP    SLT   E + + A   +C
Sbjct: 73  HTHLQMPYRGMTTVDDFFQGTKAALAGGTTMIVDHVIPEPEASLTEALEKWREWADGKTC 132

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ IT W + V  E+E +VK+KG+NSF  +MAYK  + +++  L E F     LG
Sbjct: 133 CDYSLHVDITHWSDSVKQEVETLVKQKGVNSFMVYMAYKDMYQMSNTELYEIFTFLGGLG 192

Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD + + Q RM+ELGITGPEGH LSRP  LE EA  RAI +A   N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQNRMLELGITGPEGHVLSRPEELEAEAVFRAITIASQTNCPLYV 252

Query: 289 VHVMSMDAMEEIAKARKAG 307
             VMS  +++ I++ARK G
Sbjct: 253 TKVMSKSSVDLISQARKKG 271

Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration.

Xenopus laevis (taxid: 8355)

>sp|Q62952|DPYL3_RAT Dihydropyrimidinase-related protein 3 OS=Rattus norvegicus GN=Dpysl3 PE=1 SV=2

 Score =  254 bits (650), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 130/259 (50%), Positives = 169/259 (65%), Gaps = 2/259 (0%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LIKGG +VN      AD+Y+EDG++  +  N+ V   VK ++A GK VMPGGID 
Sbjct: 13  TSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVMPGGIDV 72

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
           HTH  M + G  T+DDFF G  AALAGGTTM ID V+P    SLT  +E + + A   SC
Sbjct: 73  HTHFQMPYKGMTTVDDFFQGTKAALAGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSC 132

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ IT W++ V  E++ + KEKG+NSF  +MAYK  + +++  L E F     LG
Sbjct: 133 CDYALHVDITHWNDSVKQEVQNLSKEKGVNSFMVYMAYKDLYQVSNTELYEIFTCLGELG 192

Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD + + Q RM+E+GITGPEGH LSRP  LE EA  RAI +A   N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQARMLEMGITGPEGHVLSRPEELEAEAVFRAITVASQTNCPLYV 252

Query: 289 VHVMSMDAMEEIAKARKAG 307
             VMS  A + I++ARK G
Sbjct: 253 TKVMSKSAADLISQARKKG 271

Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
255580016	503	dihydropyrimidinase, putative [Ricinus c	0.927	0.610	0.794	1e-141
297811343	531	dihydropyrimidinase [Arabidopsis lyrata	0.870	0.542	0.823	1e-140
42567801	531	pyrimidine 2 [Arabidopsis thaliana] gi|2	0.870	0.542	0.816	1e-138
224103983	531	predicted protein [Populus trichocarpa]	0.848	0.529	0.829	1e-138
359479124	536	PREDICTED: dihydropyrimidinase-like [Vit	0.848	0.524	0.826	1e-137
449444857	528	PREDICTED: dihydropyrimidinase-like [Cuc	0.885	0.554	0.795	1e-136
357493879	542	Dihydropyrimidinase [Medicago truncatula	0.888	0.542	0.793	1e-134
357493867	534	Dihydropyrimidinase [Medicago truncatula	0.897	0.556	0.762	1e-133
224059686	506	predicted protein [Populus trichocarpa]	0.824	0.539	0.828	1e-133
356554724	524	PREDICTED: dihydropyrimidinase-like [Gly	0.809	0.511	0.817	1e-132

>gi|255580016|ref|XP_002530842.1| dihydropyrimidinase, putative [Ricinus communis] gi|223529606|gb|EEF31555.1| dihydropyrimidinase, putative [Ricinus communis]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/312 (79%), Positives = 276/312 (88%), Gaps = 5/312 (1%)

Query: 4   SMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSS----KILIKG 59
           S+++A+   L ++ L  LL   P I  S+N FC+ GS YG   CGIQSSS    KILIKG
Sbjct: 3   SISTAYRLYLQAL-LFHLLFTSPSILSSSNQFCEVGSGYGETGCGIQSSSSSSSKILIKG 61

Query: 60  GTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
           GTVVNAH Q++ADVYVEDG++VAV+PN+ V DDV VLDATGKFVMPGGIDPHTHLAM+FM
Sbjct: 62  GTVVNAHSQEVADVYVEDGVIVAVKPNLKVSDDVIVLDATGKFVMPGGIDPHTHLAMDFM 121

Query: 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179
           G++TIDDFFSGQAAALAGGTTMHIDFVIP+NGSL AG+EAYEKKAK SCMDYGFHMAITK
Sbjct: 122 GTQTIDDFFSGQAAALAGGTTMHIDFVIPVNGSLMAGYEAYEKKAKKSCMDYGFHMAITK 181

Query: 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239
           WDEV+S EME+MVKEKGINSFKFF+AYKGS MINDELL+EGFKRCKSLGALAMVHAENGD
Sbjct: 182 WDEVISREMEIMVKEKGINSFKFFLAYKGSLMINDELLLEGFKRCKSLGALAMVHAENGD 241

Query: 240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEE 299
           AVFEGQKRMIELGITGPEGHALSRPP+LEGEAT RAIRLA FVNTPLYVVHVMS+DAMEE
Sbjct: 242 AVFEGQKRMIELGITGPEGHALSRPPVLEGEATARAIRLASFVNTPLYVVHVMSIDAMEE 301

Query: 300 IAKARKAGPNFL 311
           IA+ARK+G   +
Sbjct: 302 IARARKSGQRVI 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811343|ref|XP_002873555.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] gi|297319392|gb|EFH49814.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/289 (82%), Positives = 262/289 (90%), Gaps = 1/289 (0%)

Query: 19  LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
           L LL   P +S+S   FC AG EYG   CG+ SS++ILIKGG VVNAHHQ++ADVYVEDG
Sbjct: 12  LFLLFPSPSVSDSTTQFCSAGGEYGVGSCGV-SSTRILIKGGIVVNAHHQELADVYVEDG 70

Query: 79  IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
           I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71  IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130

Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
           TTMHIDFVIPING+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPINGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEILVKEKGIN 190

Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
           SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250

Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
           HALSRPP+LEGEAT RAIRLA FVNTPLYVVHVMS+DAM+EIAKARK+G
Sbjct: 251 HALSRPPVLEGEATARAIRLARFVNTPLYVVHVMSVDAMDEIAKARKSG 299

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567801|ref|NP_568258.2| pyrimidine 2 [Arabidopsis thaliana] gi|28194047|gb|AAO33381.1|AF465755_1 dihydropyrimidine amidohydrolase [Arabidopsis thaliana] gi|9759387|dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] gi|332004390|gb|AED91773.1| pyrimidine 2 [Arabidopsis thaliana]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/289 (81%), Positives = 261/289 (90%), Gaps = 1/289 (0%)

Query: 19  LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
           L LL   P  SES   FC AG E G   CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+G
Sbjct: 12  LFLLFPSPSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENG 70

Query: 79  IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
           I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71  IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130

Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
           TTMHIDFVIP+NG+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGIN 190

Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
           SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250

Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
           HALSRPP+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+G
Sbjct: 251 HALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSG 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103983|ref|XP_002313270.1| predicted protein [Populus trichocarpa] gi|222849678|gb|EEE87225.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/281 (82%), Positives = 260/281 (92%)

Query: 27  PISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN 86
           P +  +N FC+AG  YG   CG+ SS+K+LIKGGTVVNAHHQ++ADVYVEDGI+VAV+P+
Sbjct: 20  PSNSQSNQFCEAGIGYGEVGCGLSSSTKLLIKGGTVVNAHHQEVADVYVEDGIIVAVKPD 79

Query: 87  INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV 146
           + V DDVKV+DATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFV
Sbjct: 80  LKVTDDVKVIDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFV 139

Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
           IP+NGSL AG E+YE+KAK SCMDYGFHMAITK+D+ VS +ME+MVKEKGINSFKFF+AY
Sbjct: 140 IPVNGSLIAGLESYEEKAKKSCMDYGFHMAITKFDDSVSRDMEIMVKEKGINSFKFFLAY 199

Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
           KGS M+NDELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPL
Sbjct: 200 KGSLMVNDELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPL 259

Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
           LEGEAT RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+G
Sbjct: 260 LEGEATARAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSG 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479124|ref|XP_002273526.2| PREDICTED: dihydropyrimidinase-like [Vitis vinifera] gi|296083879|emb|CBI24267.3| unnamed protein product [Vitis vinifera]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/283 (82%), Positives = 257/283 (90%), Gaps = 2/283 (0%)

Query: 35  FCDAGSEYGGPQCGI--QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
           FCDAG+ +G   C +  +S+SK+LIKGGTVVNAHHQ+IADVYVEDGI+VAV+PNI VGDD
Sbjct: 31  FCDAGTGFGDSGCVVSSKSASKLLIKGGTVVNAHHQEIADVYVEDGIIVAVKPNIKVGDD 90

Query: 93  VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
           V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+ GS
Sbjct: 91  VTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVKGS 150

Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
           L+ G EAY+ KAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFF+AYKG+ MI
Sbjct: 151 LSKGLEAYKDKAKKSCMDYGFHMAITKWDENVSREMEIMVKEKGINSFKFFLAYKGALMI 210

Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
           NDELL+EG K+CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP+LEGEAT
Sbjct: 211 NDELLLEGLKKCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEGEAT 270

Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTI 315
            RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+G   +   +
Sbjct: 271 ARAIRLASFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPV 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444857|ref|XP_004140190.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] gi|449480993|ref|XP_004156050.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/294 (79%), Positives = 265/294 (90%), Gaps = 1/294 (0%)

Query: 18  LLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVED 77
           L++L+     I+ES+  FCDAG       CGI SSSK+LIKGGTVVNAHHQ++ADVYVED
Sbjct: 9   LIILISSLCFIAESDQ-FCDAGIGIDKSTCGITSSSKLLIKGGTVVNAHHQEVADVYVED 67

Query: 78  GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAG 137
           GI+VAV+ NI VGDDV V+DATGK+VMPGGIDPHTHLA EFMG+ET+DDFF+GQAAALAG
Sbjct: 68  GIIVAVKRNIKVGDDVAVVDATGKYVMPGGIDPHTHLAFEFMGTETVDDFFTGQAAALAG 127

Query: 138 GTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
           GTTMHIDFVIP+NGSL+AGFE+Y KKAK SCMDYGFHMAITKWDEVV+ EME+MVKEKGI
Sbjct: 128 GTTMHIDFVIPVNGSLSAGFESYVKKAKKSCMDYGFHMAITKWDEVVAQEMEIMVKEKGI 187

Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257
           NSFKFF+AYKG+ MI+DELL++G K+CKSLGALAMVHAENGDAVFEGQ+RMIELGITGPE
Sbjct: 188 NSFKFFLAYKGALMISDELLLQGLKKCKSLGALAMVHAENGDAVFEGQERMIELGITGPE 247

Query: 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311
           GHALSRP +LEGEAT+RAIRLA FVNTPLYVVHVMS+DAMEEIAKARKAG   +
Sbjct: 248 GHALSRPAVLEGEATSRAIRLASFVNTPLYVVHVMSIDAMEEIAKARKAGQKVI 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493879|ref|XP_003617228.1| Dihydropyrimidinase [Medicago truncatula] gi|355518563|gb|AET00187.1| Dihydropyrimidinase [Medicago truncatula]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 259/300 (86%), Gaps = 6/300 (2%)

Query: 18  LLLLLLYFPPIS---ESNNLFCDAGSEYGGPQCGIQSS---SKILIKGGTVVNAHHQQIA 71
           L  L++   P S     +N FC AG  YG   CG  SS   +K+LIKGGTVVNAHHQQIA
Sbjct: 16  LFFLIITITPSSLAQSQHNQFCVAGIGYGESTCGTSSSSSSNKLLIKGGTVVNAHHQQIA 75

Query: 72  DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
           DVYVEDGI+VAV P I VGDDV V+DATGKFVMPGGIDPHTHL MEFM +  +DDFFSGQ
Sbjct: 76  DVYVEDGIIVAVNPTIAVGDDVYVIDATGKFVMPGGIDPHTHLEMEFMNTVAVDDFFSGQ 135

Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191
           AAALAGGTTMHIDFVIP NGSLTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+M
Sbjct: 136 AAALAGGTTMHIDFVIPTNGSLTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELM 195

Query: 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
           VKEKGINSFKFFMAYKGS MI+DELL+EGFK+CKSLGALAMVHAENGDAV+EGQK+MIEL
Sbjct: 196 VKEKGINSFKFFMAYKGSLMISDELLLEGFKKCKSLGALAMVHAENGDAVYEGQKKMIEL 255

Query: 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311
           GITGPEGHALSRP +LEGEAT RAIRLA+FVNTPLYVVHVMS+DAMEE+AKARK+G   +
Sbjct: 256 GITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEVAKARKSGQRVI 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493867|ref|XP_003617222.1| Dihydropyrimidinase [Medicago truncatula] gi|355518557|gb|AET00181.1| Dihydropyrimidinase [Medicago truncatula]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/303 (76%), Positives = 265/303 (87%), Gaps = 6/303 (1%)

Query: 19  LLLLLYFPPISES-----NNLFCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIAD 72
           LLL ++F  I+ S     NN FC+AG E G   CG  SS+ K+LIKGGTVVNAHHQ +AD
Sbjct: 9   LLLPIFFFLITTSLSQHANNQFCEAGIESGESTCGTSSSTNKLLIKGGTVVNAHHQHVAD 68

Query: 73  VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
           VYVEDGI+VAVQPNI VGDDV V+DATGKFVMPGGIDPH HL M+ +G+ ++DDFFSGQ+
Sbjct: 69  VYVEDGIIVAVQPNIMVGDDVYVIDATGKFVMPGGIDPHAHLGMDALGTTSVDDFFSGQS 128

Query: 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192
           AALAGGTTMHIDFV+PING+LTAGFEAYEKKAKNSCMDYGFH+A+TKWDE VS +ME+MV
Sbjct: 129 AALAGGTTMHIDFVMPINGNLTAGFEAYEKKAKNSCMDYGFHVAVTKWDESVSTDMEIMV 188

Query: 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252
           KEKGINSFKFFMAYK   M+NDELL++GFK+CKSLGALAMVHAENGDAV+ GQ++MIELG
Sbjct: 189 KEKGINSFKFFMAYKEFIMVNDELLLQGFKKCKSLGALAMVHAENGDAVYAGQQKMIELG 248

Query: 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLN 312
           ITGPEGH LSRPP+LEGEAT+RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+G   + 
Sbjct: 249 ITGPEGHPLSRPPMLEGEATSRAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIG 308

Query: 313 TTI 315
             I
Sbjct: 309 EPI 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059686|ref|XP_002299970.1| predicted protein [Populus trichocarpa] gi|222847228|gb|EEE84775.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/274 (82%), Positives = 253/274 (92%), Gaps = 1/274 (0%)

Query: 35  FCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV 93
           FC+AG  Y    CGI SSS K+LIKGGTVVNAHHQ+IADVYV+DGI+VAV+PN+ VGDDV
Sbjct: 2   FCEAGIGYDEVGCGISSSSTKLLIKGGTVVNAHHQEIADVYVKDGIIVAVKPNLRVGDDV 61

Query: 94  KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
           KV+DATGKFVMPGGIDPHTHLA+E + +E++DDFFSGQAAALAGGTTMHIDFVIP+NGSL
Sbjct: 62  KVIDATGKFVMPGGIDPHTHLAVEALNTESVDDFFSGQAAALAGGTTMHIDFVIPVNGSL 121

Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
            AG +AYEKKAK SCMDYGFHM ITK+D++VS +ME+MVKEKGINSFKFF+AYKG  M+N
Sbjct: 122 IAGLKAYEKKAKKSCMDYGFHMVITKFDDIVSRDMEIMVKEKGINSFKFFLAYKGVLMVN 181

Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
           DELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPLLEGEAT 
Sbjct: 182 DELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPLLEGEATA 241

Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
           RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+G
Sbjct: 242 RAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSG 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554724|ref|XP_003545693.1| PREDICTED: dihydropyrimidinase-like [Glycine max]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/279 (81%), Positives = 249/279 (89%), Gaps = 11/279 (3%)

Query: 33  NLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
           N FCDAG+           SSK+LIKGGTVVNAHHQQ+ADVYVEDGI+VA+ P I VGD+
Sbjct: 30  NQFCDAGT-----------SSKLLIKGGTVVNAHHQQVADVYVEDGIIVAINPTITVGDE 78

Query: 93  VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
           V V+DATGKFVMPGGIDPHTHL  EFM +ET+DDFFSGQAAALAGGTTMHIDFVIP  GS
Sbjct: 79  VTVIDATGKFVMPGGIDPHTHLEFEFMDTETVDDFFSGQAAALAGGTTMHIDFVIPHKGS 138

Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
           LTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFFMAYKG+ MI
Sbjct: 139 LTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELMVKEKGINSFKFFMAYKGALMI 198

Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
           NDELL+EGFK+CKSLGALAMVHAENGDAV+EGQ++MIELGITGPEGHALSRP +LEGEAT
Sbjct: 199 NDELLLEGFKKCKSLGALAMVHAENGDAVYEGQEKMIELGITGPEGHALSRPAVLEGEAT 258

Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311
            RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+G   +
Sbjct: 259 ARAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVI 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2177048	531	PYD2 "AT5G12200" [Arabidopsis	0.873	0.544	0.768	1.8e-119
MGI|MGI:1928679	519	Dpys "dihydropyrimidinase" [Mu	0.767	0.489	0.519	5.1e-67
DICTYBASE|DDB_G0269246	503	pyd2 "dihydropyrimidinase" [Di	0.779	0.512	0.526	1.3e-66
TIGR_CMR|CPS_4055	480	CPS_4055 "D-hydantoinase" [Col	0.764	0.527	0.507	1.3e-66
UNIPROTKB|E1BFN6	516	DPYS "Uncharacterized protein"	0.770	0.494	0.528	8.5e-65
UNIPROTKB|E2RSE5	518	DPYS "Uncharacterized protein"	0.770	0.492	0.523	1.8e-64
RGD|68376	519	Dpys "dihydropyrimidinase" [Ra	0.767	0.489	0.507	1.8e-64
UNIPROTKB|Q14117	519	DPYS "Dihydropyrimidinase" [Ho	0.770	0.491	0.517	2.3e-64
ZFIN|ZDB-GENE-070508-1	500	dpys "dihydropyrimidinase" [Da	0.776	0.514	0.509	4.7e-64
UNIPROTKB|F1S1E7	521	DPYS "Uncharacterized protein"	0.770	0.489	0.517	1.2e-63

TAIR|locus:2177048 PYD2 "AT5G12200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 223/290 (76%), Positives = 247/290 (85%)

Query:    26 PPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP 85
             P  SES   FC AG E G   CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+GI+VAVQP
Sbjct:    19 PSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENGIIVAVQP 77

Query:    86 NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF 145
             NI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDF
Sbjct:    78 NIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDF 137

Query:   146 VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMA 205
             VIP+NG+L AGFEAYE K++ SCMDYGFHMAITKW               GINSFKFF+A
Sbjct:   138 VIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGINSFKFFLA 197

Query:   206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 265
             YKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP
Sbjct:   198 YKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 257

Query:   266 LLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTI 315
             +LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+G   +   +
Sbjct:   258 VLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPV 307

GO:0004157 "dihydropyrimidinase activity" evidence=IGI;ISS

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0006212 "uracil catabolic process" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

MGI|MGI:1928679 Dpys "dihydropyrimidinase" [Mus musculus (taxid:10090)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 135/260 (51%), Positives = 171/260 (65%)

Query:    54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
             ++LI+GG +VN    Q+ADV VEDG+V A+  ++   +D    +++LDA GK V+PGGID
Sbjct:     6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65

Query:   110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
              HTH+   FMGS+++DDF+ G  AALAGGTTM IDF IP  GS L   FE +   A    
Sbjct:    66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125

Query:   168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
             C DY  H+A+T W               G+NSFK FMAYKG +M+ DE L   F +CK +
Sbjct:   126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185

Query:   228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
             GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PLY
Sbjct:   186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245

Query:   288 VVHVMSMDAMEEIAKARKAG 307
             VVHVMS  A + +A AR+AG
Sbjct:   246 VVHVMSKSAAKVVADARRAG 265

GO:0002058 "uracil binding" evidence=ISO;ISS

GO:0002059 "thymine binding" evidence=ISO;ISS

GO:0004157 "dihydropyrimidinase activity" evidence=ISO;ISS;TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISO

GO:0006210 "thymine catabolic process" evidence=ISO;ISS

GO:0006212 "uracil catabolic process" evidence=ISO;ISS

GO:0008152 "metabolic process" evidence=TAS

GO:0008270 "zinc ion binding" evidence=ISO;ISS

GO:0016597 "amino acid binding" evidence=ISO;ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0019482 "beta-alanine metabolic process" evidence=ISO;ISS

GO:0019860 "uracil metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=ISO;ISS

GO:0051289 "protein homotetramerization" evidence=ISO;ISS

DICTYBASE|DDB_G0269246 pyd2 "dihydropyrimidinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 138/262 (52%), Positives = 174/262 (66%)

Query:    49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
             +  +  ILIK GTVVN      +DV VE+GI+  +  NI   + +KV+DAT K ++PGGI
Sbjct:     4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63

Query:   109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
             D HTH  + FMG+ ++DDF  G  AA+AGGTT  IDFVIP  G SL   ++ ++K A  K
Sbjct:    64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123

Query:   166 NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
              +C DY  H+AIT W               G+NSFK FMAYK SFM+ D+ +   FKRCK
Sbjct:   124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182

Query:   226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
              LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP  LE EAT RAI +A+ V TP
Sbjct:   183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242

Query:   286 LYVVHVMSMDAMEEIAKARKAG 307
             +Y+VHV S+ A + I K RK G
Sbjct:   243 VYIVHVQSIGAADVICKHRKEG 264

GO:0005615 "extracellular space" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IEA;IDA

GO:0004157 "dihydropyrimidinase activity" evidence=IEA;IDA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

TIGR_CMR|CPS_4055 CPS_4055 "D-hydantoinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 129/254 (50%), Positives = 172/254 (67%)

Query:    55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
             I+I+GGTVV A     ADVY ++G +VA+  N++V ++ + +DATG++++PGGIDPHTH+
Sbjct:     3 IIIRGGTVVTADMTFAADVYCDEGKIVAIGDNLDVPENAECIDATGQYIIPGGIDPHTHM 62

Query:   115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173
              + FMG+   DDF++G AA LAGGTT  IDFVIP  G SL   F  ++  A  S  DY F
Sbjct:    63 QLPFMGTVASDDFYTGTAAGLAGGTTTIIDFVIPAPGQSLIEAFHQWQDWASKSAADYSF 122

Query:   174 HMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
             H+AIT W               G+NSFK FMAYK + M +DE L++ F+R   LGA+  V
Sbjct:   123 HVAITWWDDSVYEDMGTLVNEYGVNSFKHFMAYKNAIMADDETLVKSFRRSMDLGAIPTV 182

Query:   234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
             HAENG+ VF+ Q+ M+  GITGPEGH LSRPP +EGEA  RAIR+AE +N P+YVVHV  
Sbjct:   183 HAENGELVFQLQQEMLSQGITGPEGHPLSRPPAVEGEAANRAIRIAEVMNVPIYVVHVSC 242

Query:   294 MDAMEEIAKARKAG 307
              +++E I +AR  G
Sbjct:   243 KESLEAITRARNEG 256

GO:0004157 "dihydropyrimidinase activity" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|E1BFN6 DPYS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 138/261 (52%), Positives = 167/261 (63%)

Query:    53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGD---DVKVLDATGKFVMPGGI 108
             S +LI+GG VVN    Q ADV VEDG+V AV  ++   GD    ++VLDA GK V+PGGI
Sbjct:     5 SLLLIRGGCVVNDDSSQEADVLVEDGVVQAVGRHVLPPGDAPAGLRVLDAAGKLVLPGGI 64

Query:   109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
             D HTH+   FMGS ++DDF  G  AALAGGTTM +DF IP  G SL   F+ +   A   
Sbjct:    65 DTHTHMQFPFMGSRSVDDFHLGTKAALAGGTTMIMDFAIPHKGHSLIEAFDTWRSWADPQ 124

Query:   168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
              C DY  H+A+T W               G+NSFK FMAYK  +M+ D  L E F RCK 
Sbjct:   125 VCCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDVYMVRDVELYEAFSRCKE 184

Query:   227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
             +GA+A VHAENGD V EG K+M+ LGITGPEGH LSRP  +E EAT RA+ +A  VN PL
Sbjct:   185 IGAIAQVHAENGDLVAEGAKKMLALGITGPEGHELSRPEAVEAEATLRAVTIASAVNCPL 244

Query:   287 YVVHVMSMDAMEEIAKARKAG 307
             YVVHVMS  A + +A AR+ G
Sbjct:   245 YVVHVMSKSAAKVVADARRDG 265

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0006212 "uracil catabolic process" evidence=IEA

GO:0004157 "dihydropyrimidinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2RSE5 DPYS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 136/260 (52%), Positives = 167/260 (64%)

Query:    53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGID 109
             S++LI+GG VVNA   Q ADV VEDG + A+  ++        ++VLDA+GK V+PGGID
Sbjct:     5 SRLLIRGGRVVNADLSQAADVLVEDGPMRALGRHLLPPGGAAGLRVLDASGKLVLPGGID 64

Query:   110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS- 167
              HTH+   FMGS ++DDF  G  AALAGGTTM IDF IP  G SL   FE +   A    
Sbjct:    65 THTHMQFPFMGSRSVDDFLQGTQAALAGGTTMIIDFAIPQKGGSLIQAFETWRSWADPKV 124

Query:   168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
             C DY  H+A+T W               G+NSFK FMAYK  +M+ DE L   F +CK +
Sbjct:   125 CCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDLYMVRDEELYAAFSQCKEI 184

Query:   228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
             GA+A+VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PLY
Sbjct:   185 GAIALVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 244

Query:   288 VVHVMSMDAMEEIAKARKAG 307
             VVHVMS  A + IA AR+ G
Sbjct:   245 VVHVMSKSAAKVIADARRDG 264

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|68376 Dpys "dihydropyrimidinase" [Rattus norvegicus (taxid:10116)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 132/260 (50%), Positives = 168/260 (64%)

Query:    54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGDD---VKVLDATGKFVMPGGID 109
             ++LI+GG VVN    Q+ADV VEDG+V A+  ++   GD    +++LDA GK V+PGGID
Sbjct:     6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65

Query:   110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
              HTH+   FMGS+++DDF  G  AALAGGTTM IDF IP  GS L   FE +   A    
Sbjct:    66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125

Query:   168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
             C DY  H+A+T W               G+NSFK FMAYK  +M+ D+ +   F +CK +
Sbjct:   126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185

Query:   228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
             GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PLY
Sbjct:   186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245

Query:   288 VVHVMSMDAMEEIAKARKAG 307
             +VHVMS  A + IA A++ G
Sbjct:   246 IVHVMSKSAAKVIADAKREG 265

GO:0002058 "uracil binding" evidence=IDA

GO:0002059 "thymine binding" evidence=IDA

GO:0004157 "dihydropyrimidinase activity" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISO

GO:0006210 "thymine catabolic process" evidence=IDA

GO:0006212 "uracil catabolic process" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0016597 "amino acid binding" evidence=IDA

GO:0019482 "beta-alanine metabolic process" evidence=IDA

GO:0019860 "uracil metabolic process" evidence=IDA

GO:0051219 "phosphoprotein binding" evidence=IEA;ISO

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0051289 "protein homotetramerization" evidence=IDA

UNIPROTKB|Q14117 DPYS "Dihydropyrimidinase" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 135/261 (51%), Positives = 166/261 (63%)

Query:    53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
             S++LI+GG VVN    ++ADV VEDG+V A+  ++         ++VLDA GK V+PGGI
Sbjct:     5 SRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGI 64

Query:   109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
             D HTH+   FMGS +IDDF  G  AAL+GGTTM IDF IP  G SL   FE +   A   
Sbjct:    65 DTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPK 124

Query:   168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
              C DY  H+A+T W               G+NSFK FMAYK  +M+ D  L E F RCK 
Sbjct:   125 VCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKE 184

Query:   227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
             +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PL
Sbjct:   185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244

Query:   287 YVVHVMSMDAMEEIAKARKAG 307
             Y+VHVMS  A + IA AR+ G
Sbjct:   245 YIVHVMSKSAAKVIADARRDG 265

GO:0002058 "uracil binding" evidence=IEA

GO:0002059 "thymine binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019482 "beta-alanine metabolic process" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0004157 "dihydropyrimidinase activity" evidence=IMP;IDA;TAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IDA

GO:0006210 "thymine catabolic process" evidence=ISS

GO:0051289 "protein homotetramerization" evidence=ISS

GO:0006212 "uracil catabolic process" evidence=IDA;IMP

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-070508-1 dpys "dihydropyrimidinase" [Danio rerio (taxid:7955)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 132/259 (50%), Positives = 164/259 (63%)

Query:    51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
             + S ILIKGG VVN     +ADVY+EDG++  V  ++ V    +V+DAT K V+PGGID 
Sbjct:     3 AQSCILIKGGKVVNEDFSVMADVYIEDGVISGVGTDLQVAAGTRVIDATHKLVLPGGIDS 62

Query:   111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-C 168
             HTH+ + FMG+ T DDF +G  AA+AGGTTM +DFVI   G SL   +E + + A    C
Sbjct:    63 HTHMELSFMGTTTADDFQTGTQAAVAGGTTMILDFVIAQKGCSLLEAYERWRRTADPKVC 122

Query:   169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
              DY  HMA+T W               GINSFK FMAYK  +M+ D  L   F  CK +G
Sbjct:   123 CDYSLHMAVTWWDDTVKKEMETLVSEKGINSFKMFMAYKDLYMLQDLELYAVFSTCKEIG 182

Query:   229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
             A+A VHAENGD + EG KRM+ LGITGPEGH + RP  +E EAT RAI +A   N PLYV
Sbjct:   183 AIAQVHAENGDLIAEGAKRMLSLGITGPEGHEMCRPEEVEAEATQRAITIAHATNCPLYV 242

Query:   289 VHVMSMDAMEEIAKARKAG 307
             VHVMS  A + +A AR+ G
Sbjct:   243 VHVMSKSAAKVVANARRNG 261

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IEA

UNIPROTKB|F1S1E7 DPYS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 135/261 (51%), Positives = 164/261 (62%)

Query:    53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
             S++LI+GG VVN    Q+ADV VEDG+V A+  ++         ++VLDA GK V+PGGI
Sbjct:     5 SRLLIRGGRVVNDDSSQVADVLVEDGVVRALGRDLLPPGGAPAGLRVLDAAGKLVLPGGI 64

Query:   109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
             D HTH+   FMGS ++DDF  G  AALAGGTTM IDF IP  G SL   FE +   A + 
Sbjct:    65 DTHTHMQFPFMGSRSVDDFHQGTKAALAGGTTMIIDFAIPHKGHSLVEAFETWRSWADSK 124

Query:   168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
              C DY  H+A+T W               G+NSFK FMAYK  +M+ D  L   F  CK 
Sbjct:   125 VCCDYSLHVAVTWWSDQVKEEMKILTQEKGVNSFKMFMAYKDLYMLRDVELYTVFSWCKE 184

Query:   227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
             +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  VN PL
Sbjct:   185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244

Query:   287 YVVHVMSMDAMEEIAKARKAG 307
             YVVHVMS  A   IA AR+ G
Sbjct:   245 YVVHVMSKSAARVIADARRDG 265

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0006212 "uracil catabolic process" evidence=IEA

GO:0004157 "dihydropyrimidinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.6__1196__AT5G12200.1	annotation not avaliable (531 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.3__1966__AT3G17810.1	annotation not avaliable (426 aa)	•	•	•	•		•	•		0.978
	fgenesh2_kg.8__2461__AT5G64370.1	annotation not avaliable (408 aa)	•	•		•		•	•		0.964
	fgenesh2_kg.8__458__AT5G43600.1	annotation not avaliable (477 aa)	•					•	•		0.898
	scaffold_302416.1	annotation not avaliable (397 aa)	•					•	•		0.848
	fgenesh2_kg.4__704__AT2G27450.2	annotation not avaliable (322 aa)	•	•				•	•		0.836
	fgenesh2_kg.6__268__AT5G03555.1	annotation not avaliable (599 aa)	•		•						0.826
	scaffold_702387.1	annotation not avaliable (529 aa)	•					•	•		0.700
	fgenesh2_kg.1__3154__AT1G29900.1	annotation not avaliable (1183 aa)	•								0.621
	fgenesh2_kg.7__236__AT4G38090.1	annotation not avaliable (239 aa)							•		0.441

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
PLN02942	486	PLN02942, PLN02942, dihydropyrimidinase	0.0
cd01314	447	cd01314, D-HYD, D-hydantoinases (D-HYD) also calle	1e-144
TIGR02033	454	TIGR02033, D-hydantoinase, D-hydantoinase	1e-133
PRK08323	459	PRK08323, PRK08323, phenylhydantoinase; Validated	1e-127
PRK13404	477	PRK13404, PRK13404, dihydropyrimidinase; Provision	1e-62
COG0044	430	COG0044, PyrC, Dihydroorotase and related cyclic a	2e-60
cd01315	447	cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A	2e-39
PRK06189	451	PRK06189, PRK06189, allantoinase; Provisional	7e-34
TIGR03178	443	TIGR03178, allantoinase, allantoinase	1e-33
cd01302	337	cd01302, Cyclic_amidohydrolases, Cyclic amidohydro	2e-31
PRK02382	443	PRK02382, PRK02382, dihydroorotase; Provisional	4e-27
PRK08044	449	PRK08044, PRK08044, allantoinase; Provisional	1e-23
TIGR00857	411	TIGR00857, pyrC_multi, dihydroorotase, multifuncti	5e-23
cd01318	361	cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg	1e-20
PRK09236	444	PRK09236, PRK09236, dihydroorotase; Reviewed	1e-17
PRK07575	438	PRK07575, PRK07575, dihydroorotase; Provisional	3e-17
pfam13594	66	pfam13594, Amidohydro_5, Amidohydrolase	2e-16
PRK09060	444	PRK09060, PRK09060, dihydroorotase; Validated	2e-15
cd01317	374	cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg	7e-14
PRK09357	423	PRK09357, pyrC, dihydroorotase; Validated	5e-13
PRK09237	380	PRK09237, PRK09237, dihydroorotase; Provisional	9e-13
PRK04250	398	PRK04250, PRK04250, dihydroorotase; Provisional	1e-12
PLN02795	505	PLN02795, PLN02795, allantoinase	4e-12
TIGR03121	556	TIGR03121, one_C_dehyd_A, formylmethanofuran dehyd	5e-12
PRK08204	449	PRK08204, PRK08204, hypothetical protein; Provisio	8e-11
COG0402	421	COG0402, SsnA, Cytosine deaminase and related meta	1e-10
cd01304	541	cd01304, FMDH_A, Formylmethanofuran dehydrogenase	1e-10
cd01309	359	cd01309, Met_dep_hydrolase_C, Metallo-dependent hy	1e-09
COG1229	575	COG1229, FwdA, Formylmethanofuran dehydrogenase su	2e-09
cd01298	411	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz	3e-09
PRK08393	424	PRK08393, PRK08393, N-ethylammeline chlorohydrolas	6e-09
PRK10657	388	PRK10657, PRK10657, isoaspartyl dipeptidase; Provi	6e-09
cd01297	415	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D	1e-08
PRK07228	445	PRK07228, PRK07228, N-ethylammeline chlorohydrolas	2e-08
COG1228	406	COG1228, HutI, Imidazolonepropionase and related a	2e-08
cd00854	374	cd00854, NagA, N-acetylglucosamine-6-phosphate dea	2e-07
cd01296	371	cd01296, Imidazolone-5PH, Imidazolonepropionase/im	3e-07
COG1574	535	COG1574, COG1574, Predicted metal-dependent hydrol	3e-07
COG1001	584	COG1001, AdeC, Adenine deaminase [Nucleotide trans	5e-07
PRK06038	430	PRK06038, PRK06038, N-ethylammeline chlorohydrolas	5e-07
PRK09356	406	PRK09356, PRK09356, imidazolonepropionase; Validat	7e-07
cd01293	398	cd01293, Bact_CD, Bacterial cytosine deaminase and	2e-06
PRK07627	425	PRK07627, PRK07627, dihydroorotase; Provisional	2e-06
cd01307	338	cd01307, Met_dep_hydrolase_B, Metallo-dependent hy	3e-06
cd01292	275	cd01292, metallo-dependent_hydrolases, Superfamily	5e-06
cd01300	479	cd01300, YtcJ_like, YtcJ_like metal dependent amid	7e-06
PRK09061	509	PRK09061, PRK09061, D-glutamate deacylase; Validat	1e-05
PRK07369	418	PRK07369, PRK07369, dihydroorotase; Provisional	2e-05
cd01299	342	cd01299, Met_dep_hydrolase_A, Metallo-dependent hy	4e-05
PRK07203	442	PRK07203, PRK07203, putative chlorohydrolase/amino	7e-05
PRK01211	409	PRK01211, PRK01211, dihydroorotase; Provisional	7e-05
COG1820	380	COG1820, NagA, N-acetylglucosamine-6-phosphate dea	8e-05
TIGR01178	552	TIGR01178, ade, adenine deaminase	8e-05
COG3964	386	COG3964, COG3964, Predicted amidohydrolase [Genera	1e-04
PRK15446	383	PRK15446, PRK15446, phosphonate metabolism protein	1e-04
pfam13147	304	pfam13147, Amidohydro_4, Amidohydrolase	2e-04
cd01308	387	cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe	2e-04
pfam01979	307	pfam01979, Amidohydro_1, Amidohydrolase family	4e-04
PRK08203	451	PRK08203, PRK08203, hydroxydechloroatrazine ethyla	5e-04
PRK05985	391	PRK05985, PRK05985, cytosine deaminase; Provisiona	7e-04
PRK07572	426	PRK07572, PRK07572, cytosine deaminase; Validated	7e-04
pfam04909	272	pfam04909, Amidohydro_2, Amidohydrolase	7e-04
PRK07583	438	PRK07583, PRK07583, cytosine deaminase-like protei	8e-04
COG3653	579	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate d	0.001
TIGR02967	401	TIGR02967, guan_deamin, guanine deaminase	0.001
PRK06380	418	PRK06380, PRK06380, metal-dependent hydrolase; Pro	0.001
PRK09059	429	PRK09059, PRK09059, dihydroorotase; Validated	0.001
TIGR01224	377	TIGR01224, hutI, imidazolonepropionase	0.002
PRK12394	379	PRK12394, PRK12394, putative metallo-dependent hyd	0.002
TIGR03583	365	TIGR03583, EF_0837, probable amidohydrolase EF_083	0.002
cd01316	344	cd01316, CAD_DHOase, The eukaryotic CAD protein is	0.003

>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase

 Score =  530 bits (1367), Expect = 0.0
 Identities = 224/257 (87%), Positives = 245/257 (95%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           SS+KILIKGGTVVNAHHQ++ADVYVEDGI+VAV PN+ V DDV+V+DATGKFVMPGGIDP
Sbjct: 3   SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDP 62

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170
           HTHLAM FMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+NG+L AG+EAYEKKA+ SCMD
Sbjct: 63  HTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMD 122

Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
           YGFHMAITKWD+ VS +ME +VKEKGINSFKFFMAYKGS M+ DELL+EGFKRCKSLGAL
Sbjct: 123 YGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGAL 182

Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
           AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT RAIRLA+FVNTPLYVVH
Sbjct: 183 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVH 242

Query: 291 VMSMDAMEEIAKARKAG 307
           VMS+DAMEEIA+ARK+G
Sbjct: 243 VMSIDAMEEIARARKSG 259

Length = 486

>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin

 Score =  413 bits (1065), Expect = e-144
 Identities = 148/264 (56%), Positives = 182/264 (68%), Gaps = 3/264 (1%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++IK GT+V A     AD+ +EDG +VA+ PN+     V+V+DATGK+V+PGGIDPHTHL
Sbjct: 1   LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHL 60

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
            + FMG+ T DDF SG  AA AGGTT  IDF IP  G SL    E +  KA   S +DYG
Sbjct: 61  ELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYG 120

Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           FHM IT W + V +E+  +VK KGI+SFK FMAYKG  M++DE L++  KR K LGAL M
Sbjct: 121 FHMIITDWTDSVIEELPELVK-KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVM 179

Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
           VHAENGD + E QK+++  G TGPE HALSRPP +E EAT RAIRLAE    PLY+VHV 
Sbjct: 180 VHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239

Query: 293 SMDAMEEIAKARKAGPNFLNTTIP 316
           S +A +EIA+ARK G      T P
Sbjct: 240 SKEAADEIARARKKGLPVYGETCP 263

The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447

>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase

 Score =  387 bits (995), Expect = e-133
 Identities = 146/264 (55%), Positives = 175/264 (66%), Gaps = 2/264 (0%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
            LI+GGTVVNA     ADV +E G +VAV  N+   D V+V+DATGK+V+PGGID HTHL
Sbjct: 1   KLIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVEVIDATGKYVLPGGIDVHTHL 60

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
            M F G+ T DDFF+G  AA AGGTT  IDF +P  G SLT   E + +KA   S +DYG
Sbjct: 61  EMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEKAEGKSVIDYG 120

Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           FHM IT W++ V +E    V E+GI SFK FMAYK   M++DE L E  KR K LGAL  
Sbjct: 121 FHMMITDWNDHVLEEHIPEVVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQ 180

Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
           VHAENGD + E Q R++  G TGPE HALSRPP  E EA  RAI LA   + PLYVVHV 
Sbjct: 181 VHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALADAPLYVVHVS 240

Query: 293 SMDAMEEIAKARKAGPNFLNTTIP 316
           + DA++EIA+AR+ G      T P
Sbjct: 241 TADAVDEIAEAREKGQPVYGETCP 264

This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454

>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated

 Score =  372 bits (957), Expect = e-127
 Identities = 139/265 (52%), Positives = 171/265 (64%), Gaps = 7/265 (2%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
             LIK GTVV A     ADV +EDG + A+  N       +V+DATGK+VMPGGIDPHTH
Sbjct: 2   STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTH 57

Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
           + M F G+ + DDF +G  AA  GGTT  IDF +   G SL    EA+  KA   + +DY
Sbjct: 58  MEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117

Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
           GFHM IT W+EVV DEM  +V+E GI SFK FMAYKG+ M++D+ L+   +R   LGAL 
Sbjct: 118 GFHMIITDWNEVVLDEMPELVEE-GITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176

Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
           MVHAENGDA+   Q +++  G TGPE HALSRPP +EGEAT RAI LAE    PLY+VHV
Sbjct: 177 MVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236

Query: 292 MSMDAMEEIAKARKAGPNFLNTTIP 316
              +A+E I +AR  G      T P
Sbjct: 237 SCKEALEAIRRARARGQRVFGETCP 261

Length = 459

>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional

 Score =  205 bits (524), Expect = 1e-62
 Identities = 97/255 (38%), Positives = 143/255 (56%), Gaps = 8/255 (3%)

Query: 57  IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
           I+GGTVV A     AD+ +  G + A+   +  G   + +DATG+ V+PGG+D H H+  
Sbjct: 8   IRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGA--REIDATGRLVLPGGVDSHCHIDQ 65

Query: 117 EF-MGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYGF 173
               G    DDF++G  +A  GGTT  I F     G SL    E Y ++A    + DY F
Sbjct: 66  PSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAF 125

Query: 174 HMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           H+ +     EV+++E+  ++ + G  SFK FM Y     ++D  +++     +  GA+ M
Sbjct: 126 HLIVADPTEEVLTEELPALIAQ-GYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVM 183

Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
           VHAEN D +    KR++  G+T P+ HA+SRP L E EAT RAI LAE V+ P+ +VHV 
Sbjct: 184 VHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVS 243

Query: 293 SMDAMEEIAKARKAG 307
             +A E+I +AR  G
Sbjct: 244 GREAAEQIRRARGRG 258

Length = 477

>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]

 Score =  199 bits (507), Expect = 2e-60
 Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 16/260 (6%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LIK   VV+    ++AD+ ++DG + A+  N+      +++DA G  V+PG +D H H 
Sbjct: 3   LLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHF 62

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMD 170
                  E  + F +G  AA AGG T  +D   P         EA E K       S +D
Sbjct: 63  REPGF--EHKETFETGSRAAAAGGVTTVVDM--PNTKPPIDTAEALEDKLERAKGKSVVD 118

Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
           Y F+  +TK +    +  E  V       FK FM    +  ++D++L E  +    LGAL
Sbjct: 119 YAFYGGLTKGNLGKLELTERGV----EAGFKGFMDD-STGALDDDVLEEALEYAAELGAL 173

Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
            +VHAE+ D + EG       G+  PE     RPP+ E  A  R + LA      +++ H
Sbjct: 174 ILVHAEDDDLIAEGVMN---EGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICH 230

Query: 291 VMSMDAMEEIAKARKAGPNF 310
           + + +++E I  A+  G   
Sbjct: 231 ISTKESVELIRAAKAEGIRV 250

Length = 430

>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)

 Score =  143 bits (364), Expect = 2e-39
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 34/280 (12%)

Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
           +IK G VV     + AD+ V+ G + A+ P+I   +  +V+DA G  VMPG ID H H+ 
Sbjct: 3   VIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHIN 62

Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNS 167
               G    + F +G  AA AGG T  ID  +P+N         +L A  EA + K    
Sbjct: 63  E--PGRTEWEGFETGTKAAAAGGITTIID--MPLNSIPPTTTVENLEAKLEAAQGKLH-- 116

Query: 168 CMDYGFHMAITKWDEVVS---DEMEVMVKEKGINSFKFFMAYKG--SF-MINDELLIEGF 221
            +D GF      W  +V    D++  +  E G+  FK F+   G   F  ++DE L E  
Sbjct: 117 -VDVGF------WGGLVPGNLDQLRPLD-EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAM 168

Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
           K     G++  VHAEN +     Q++    G      +  SRP   E EA  R + LA+ 
Sbjct: 169 KELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKE 228

Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321
               L++VH+ S +A+  I +AR  G   ++ T    ++C
Sbjct: 229 TGCRLHIVHLSSAEAVPLIREARAEG---VDVT---VETC 262

But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447

>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional

 Score =  129 bits (325), Expect = 7e-34
 Identities = 84/276 (30%), Positives = 136/276 (49%), Gaps = 28/276 (10%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++I+GG VV       AD+ +++G +  + P I+     +++DA G +V PG ID H H 
Sbjct: 5   LIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHF 63

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAK----NS 167
                G    + F +G AA  AGG T + D  +P+N     +T   EA + KA+     S
Sbjct: 64  NEP--GRTHWEGFATGSAALAAGGCTTYFD--MPLNSIPPTVTR--EALDAKAELARQKS 117

Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFMAYKGS--FMINDEL-LIEGFK 222
            +D+        W  +V   +E + +  E G+  FK FM+  G+  F  +D+L L EG K
Sbjct: 118 AVDFAL------WGGLVPGNLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMK 171

Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
              +LG +  +HAE+         +  + G T    +  SRP + E EA  RA+  A+  
Sbjct: 172 EIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET 231

Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLC 318
             PL+ VH+ S  A+  IA+A+K G   ++ ++  C
Sbjct: 232 GCPLHFVHISSGKAVALIAEAKKRG---VDVSVETC 264

Length = 451

>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase

 Score =  128 bits (323), Expect = 1e-33
 Identities = 84/274 (30%), Positives = 135/274 (49%), Gaps = 24/274 (8%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++I+GG V+  + ++ ADV V+ G + A+ P   +G   K++DA G  V PG +D H H+
Sbjct: 2   LIIRGGRVILPNGEREADVGVKGGKIAAIGP-DILGPAAKIIDAGGLVVFPGVVDTHVHI 60

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK----NSCM 169
                G    + F +G  AA AGG T +ID  +P+N    T    + E K +       +
Sbjct: 61  NEP--GRTEWEGFETGTRAAAAGGITTYID--MPLNSIPATTTRASLEAKFEAAKGKLAV 116

Query: 170 DYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMAYKGS--FM-INDELLIEGFKRC 224
           D GF      W  +V   ++ +  + E G+  FK F++  G   F  ++D  L +G +  
Sbjct: 117 DVGF------WGGLVPYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMREL 170

Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
             LG L +VHAEN        +     G  G + +  SRP   E EA  R + LA+    
Sbjct: 171 ARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGC 230

Query: 285 PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLC 318
            ++VVH+ S +A+E I +A++ G   L+ T+  C
Sbjct: 231 RVHVVHLSSAEAVELITEAKQEG---LDVTVETC 261

This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443

>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids

 Score =  119 bits (301), Expect = 2e-31
 Identities = 64/220 (29%), Positives = 88/220 (40%), Gaps = 45/220 (20%)

Query: 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI--PINGSLTAGFE 158
             V+PG ID H HL  +  G+   +DF SG  AA AGG T  ID     P    L A   
Sbjct: 1   LLVLPGFIDIHVHL-RDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIEL 59

Query: 159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDEL 216
             +   ++S +D+ FH  I      V+DE++ +  + GINS K FM Y    +   +D  
Sbjct: 60  KIKLAEESSYVDFSFHAGI--GPGDVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGT 116

Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
           L+  F    S G   MVHAE                                     RA 
Sbjct: 117 LMRTFLEIASRGGPVMVHAE-------------------------------------RAA 139

Query: 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
           +LAE     +++ HV S +A+E I  A+  G        P
Sbjct: 140 QLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCP 179

Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337

>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional

 Score =  110 bits (276), Expect = 4e-27
 Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 23/259 (8%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
            L+K G V   +  Q  DV ++ G + AV  +++     +V+DA G  ++PGGID H H 
Sbjct: 4   ALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVH- 62

Query: 115 AMEF--MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA----KNSC 168
              F   G    + +++G  +A AGG T  +D   P     T   E++++KA    + S 
Sbjct: 63  ---FREPGYTHKETWYTGSRSAAAGGVTTVVD--QPNTDPPTVDGESFDEKAELAARKSI 117

Query: 169 MDYGFHMAITK-WDEVVSDEMEVMVKEKGINSF-KFFMA-YKGSFMINDELLIEGFKRCK 225
           +D+G +  +T  WD + S      + E+G+ +  + FMA   G   I++EL  E      
Sbjct: 118 VDFGINGGVTGNWDPLES------LWERGVFALGEIFMADSTGGMGIDEELFEEALAEAA 171

Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
            LG LA VHAE+ D   E  K +   G    +  +  RP   E  A  RA+ +A      
Sbjct: 172 RLGVLATVHAEDEDLFDELAKLLK--GDADADAWSAYRPAAAEAAAVERALEVASETGAR 229

Query: 286 LYVVHVMSMDAMEEIAKAR 304
           +++ H+ + + ++   +  
Sbjct: 230 IHIAHISTPEGVDAARREG 248

Length = 443

>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional

 Score =  100 bits (251), Expect = 1e-23
 Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 44/292 (15%)

Query: 52  SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
           S  ++IK GTV+  +  ++ D+ V+ G + A+  ++  GD  +V+DA+G  V PG +D H
Sbjct: 2   SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAH 59

Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
           TH++    G    + + +G  AA  GG T  I+  +P+N         S+   F+A + K
Sbjct: 60  THISEP--GRSHWEGYETGTRAAAKGGITTMIE--MPLNQLPATVDRASIELKFDAAKGK 115

Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMA------YKGSFM-IND 214
                   G          +VS  ++ +  + E G+  FK F+A          F  +ND
Sbjct: 116 LTIDAAQLG---------GLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVND 166

Query: 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
               +G ++   LG   +VH EN    D + E  KR    G      +  SRP   E EA
Sbjct: 167 WQFYKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEA 223

Query: 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323
             R + LA+     L+V H+ S + +EE+ +AR+ G +        C+SC +
Sbjct: 224 IRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDV------TCESCPH 269

Length = 449

>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type

 Score = 98.3 bits (245), Expect = 5e-23
 Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 10/242 (4%)

Query: 71  ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
            D+ VE G +  +       D  +V+DA G  V+PG ID H HL  +  G E  +D  SG
Sbjct: 6   VDILVEGGRIKKIGKLRIPPDA-EVIDAKGLLVLPGFIDLHVHLR-DP-GEEYKEDIESG 62

Query: 131 QAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEM 188
             AA  GG T   D     P   +        ++  K S +D   +  +T+ ++      
Sbjct: 63  SKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTE 122

Query: 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248
              +KE G     F     GS + +   +    +     G    +HAE+ D ++ G    
Sbjct: 123 AYELKEAGAVGRMFTD--DGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMH- 179

Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP 308
              G +  +    +RPP  E  A  R + LA+    P+++ H+ + +++E I KA+  G 
Sbjct: 180 --EGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGI 237

Query: 309 NF 310
             
Sbjct: 238 KI 239

In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411

>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 23/211 (10%)

Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
           G  ++PG ID H H   E  G    +DF SG  AA AGG T  +D  +P     T   EA
Sbjct: 1   GLLILPGVIDIHVHF-REP-GLTYKEDFVSGSRAAAAGGVTTVMD--MPNTKPPTTTAEA 56

Query: 160 YEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMIND 214
             +K    A  S +DYG +  +T   E +       + +     +K FM    G  + ++
Sbjct: 57  LYEKLRLAAAKSVVDYGLYFGVTG-SEDLE-----ELDKAPPAGYKIFMGDSTGDLLDDE 110

Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
           E L   F        L   HAE+ D + E +K +          H   R       AT R
Sbjct: 111 ETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESA-----HPRIRDAEAAAVATAR 162

Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305
           A++LA      L++ HV + + ++ I KA+ 
Sbjct: 163 ALKLARRHGARLHICHVSTPEELKLIKKAKP 193

This group contains the archeal members of the DHOase family. Length = 361

>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 33/254 (12%)

Query: 53  SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
            +ILIK   +VN       DV +E+G +  +  +I+      V+DA G++++PG ID   
Sbjct: 2   KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQV 61

Query: 113 HLAMEFM--GSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSC 168
           H    F   G     D  S   AA+AGG T  ++     P   +L A    Y+  A+ S 
Sbjct: 62  H----FREPGLTHKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSL 117

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFM-AYKGSFMINDELLIEG-FKRC 224
            +Y F+   T      +D ++ + +   K +   K FM A  G+ ++++   +E  F+  
Sbjct: 118 ANYSFYFGAT------NDNLDEIKRLDPKRVCGVKVFMGASTGNMLVDNPETLERIFRDA 171

Query: 225 KSLGALAMVHAENGDAVFEGQKRMIEL---GITGPEGHALSRPPLLEGEA----TTRAIR 277
            +L A    H E+   +     +  E     I   E H L R      EA    ++ A+ 
Sbjct: 172 PTLIA---THCEDTPTIKANLAKYKEKYGDDIP-AEMHPLIR----SAEACYKSSSLAVS 223

Query: 278 LAEFVNTPLYVVHV 291
           LA+   T L+V+H+
Sbjct: 224 LAKKHGTRLHVLHI 237

Length = 444

>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 30/278 (10%)

Query: 51  SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
               +LI+   ++    +  + DV VEDG +VA+ P I+      V+DA G  ++PG ID
Sbjct: 1   MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVID 60

Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AK 165
           P  H      G E  +D F+   A   GG T  ++  +P    LT    A + K    A+
Sbjct: 61  PQVHFREP--GLEHKEDLFTASRACAKGGVTSFLE--MPNTKPLTTTQAALDDKLARAAE 116

Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIEG-FKR 223
              ++YGF +  T       D +  ++        K FM +  G  ++++E  +E  F  
Sbjct: 117 KCVVNYGFFIGAT------PDNLPELLTANPTCGIKIFMGSSHGPLLVDEEAALERIFAE 170

Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
              L A   VHAE+   +   +      GI+ P  H+  +       AT  A++L++   
Sbjct: 171 GTRLIA---VHAEDQARIRARRAEFA--GISDPADHSQIQDEEAALLATRLALKLSKKYQ 225

Query: 284 TPLYVVHVMSMDAMEEIAKAR------KAGPN--FLNT 313
             L+++H+ +    E + + +      +  P    LNT
Sbjct: 226 RRLHILHLSTAIEAELLRQDKPSWVTAEVTPQHLLLNT 263

Length = 438

>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 73  VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
           + +EDG + A+  +     + +V+DA GK+V+PG ID H HL  E       +   +G A
Sbjct: 1   ILIEDGKIAAIGGDDLPDAEAEVIDAEGKYVLPGLIDMHVHLGEE----PGRETLETGAA 56

Query: 133 AALAGGTT 140
           AALAGG T
Sbjct: 57  AALAGGVT 64

This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66

>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 38/264 (14%)

Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
           ++KGGTVVN   +  AD+ + DG + A+          +V+D  G  V+PG ID   H  
Sbjct: 8   ILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGASAG-EVIDCRGLHVLPGVIDSQVHFR 66

Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK---AKNS--CMD 170
               G E  +D  +G  AA+ GG T    F +P    LT   EA   K   A++   C D
Sbjct: 67  EP--GLEHKEDLETGSRAAVLGGVTAV--FEMPNTNPLTTTAEALADKLARARHRMHC-D 121

Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIE-----GFKRC 224
           + F++  T+ D    DE+  + +  G    K FM +  G  ++ D+  +      G +R 
Sbjct: 122 FAFYVGGTR-DNA--DELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRILRNGRRR- 177

Query: 225 KSLGALAMVHAENGDAVFEGQKRMIE---LGITG-PEGHALSRPPLLEGEATTRAIRLAE 280
                 A  H+E+       + R+ E   L + G P  H + R       AT R +RLA 
Sbjct: 178 ------AAFHSED-------EYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLAR 224

Query: 281 FVNTPLYVVHVMSMDAMEEIAKAR 304
                ++V+HV + + ++ +A  +
Sbjct: 225 ETGRRIHVLHVSTAEEIDFLADHK 248

Length = 444

>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 21/226 (9%)

Query: 92  DVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT----M-HIDFV 146
           D +V+DA GK + PG +D H HL     G E  +   SG  AA AGG T    M + + V
Sbjct: 1   DAEVIDAEGKILAPGLVDLHVHL--REPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPV 58

Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV--KEKGINSFKFFM 204
           I     +       +       +  G   A+TK  +    E+  +    E G   F    
Sbjct: 59  IDNPAVVELLKNRAKDVGIVRVLPIG---ALTKGLKGE--ELTEIGELLEAGAVGF---- 109

Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264
           +  G  + + ELL    +    L    +VH E+      G   M E  +    G     P
Sbjct: 110 SDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGV--MNEGKVASRLGLP-GIP 166

Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNF 310
           P  E     R + LAE     ++  H+ +  ++E I KA+  G   
Sbjct: 167 PEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPV 212

This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374

>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 71/287 (24%)

Query: 53  SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
             ILIK G V++     ++ADV ++DG + A+  NI   +  +V+DATG  V PG +D H
Sbjct: 1   MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLH 59

Query: 112 THLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------ID------------------ 144
            HL     G E  +   +G  AA AGG TT+         ID                  
Sbjct: 60  VHLREP--GQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLV 117

Query: 145 FVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM 204
            V+P+ G++T G               G  +           E   + KE G+ +F    
Sbjct: 118 DVLPV-GAITKGLA-------------GEELT----------EFGAL-KEAGVVAF---- 148

Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGHA 260
           +  G  + +  L+    +  K+L  L   H E        V    +    LG+ G     
Sbjct: 149 SDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPG----- 203

Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
              P + E     R + LAE     +++ HV +  ++E I  A+  G
Sbjct: 204 --IPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALG 248

Length = 423

>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional

 Score = 68.0 bits (167), Expect = 9e-13
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 55  ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           +L++GG V++       + D+ +EDG + AV  +I+     KV+D +G +V PG ID H 
Sbjct: 1   LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHV 60

Query: 113 H 113
           H
Sbjct: 61  H 61

Length = 380

>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 65/257 (25%), Positives = 101/257 (39%), Gaps = 49/257 (19%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           K L+KG  V          + +E+G +  +      G   +V+   G  ++PG ID H H
Sbjct: 5   KFLLKGRIVE-------GGIGIENGRISKISLRDLKGK--EVIKVKGGIILPGLIDVHVH 55

Query: 114 LAMEFMGS--ETIDDFFSGQAAALAGGTTMHIDFV---IPINGSLTAGFEAYEKKAKNSC 168
           L  +F  S  ETI+   SG  AAL GG T+  D      PI    T  +E   + A+   
Sbjct: 56  L-RDFEESYKETIE---SGTKAALHGGITLVFDMPNTKPPIMDEKT--YEKRMRIAEKKS 109

Query: 169 -MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
             DY  +  I    E   +      K        F  A  G     +      +    + 
Sbjct: 110 YADYALNFLIAGNCEKAEEIKADFYKI-------FMGASTGGIFSEN--FEVDYA--CAP 158

Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
           G ++ VHAE+ + + E            PE     RPP  E  A  RA+   + +  PL+
Sbjct: 159 GIVS-VHAEDPELIREF-----------PE-----RPPEAEVVAIERALEAGKKLKKPLH 201

Query: 288 VVHVMSMDAMEEIAKAR 304
           + H+ + D ++ I K+ 
Sbjct: 202 ICHISTKDGLKLILKSN 218

Length = 398

>gnl|CDD|178392 PLN02795, PLN02795, allantoinase

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 78/305 (25%), Positives = 113/305 (37%), Gaps = 57/305 (18%)

Query: 52  SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGI 108
           S +++   G +  A       V VE G +V+V              VLD     VMPG I
Sbjct: 50  SKRVVTPAGVIPGA-------VEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLI 102

Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT----AGFEAYEKKA 164
           D H HL     G    + F +G  AA AGG T  +D  +P+N   +       E   + A
Sbjct: 103 DVHVHL--NEPGRTEWEGFPTGTKAAAAGGITTLVD--MPLNSFPSTTSVETLELKIEAA 158

Query: 165 KNSCM-DYGFHMAITKWDEVVSD------EMEVMVKEKGINSFKFFMAYKGSFMIND--- 214
           K     D GF      W  +V +       +E ++ + G    K FM   G   IND   
Sbjct: 159 KGKLYVDVGF------WGGLVPENAHNASVLEELL-DAGALGLKSFMCPSG---INDFPM 208

Query: 215 ---ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
                +          G   +VHAE    V       ++        +  SRPP  E EA
Sbjct: 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPV--ESDSRLDADPRSYSTYLKSRPPSWEQEA 266

Query: 272 ---------TTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGPNFLNTTIP--LCD 319
                     TR   +AE     +++VH+  +  ++E I +A+  G +    T P  L  
Sbjct: 267 IRQLLEVAKDTRPGGVAE--GAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAF 324

Query: 320 SCSNI 324
           S   I
Sbjct: 325 SAEEI 329

Length = 505

>gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 54  KILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +ILIK GTV    N    ++ D+++ DG +V   P        KV+DA+GK VM GG+D 
Sbjct: 1   EILIKNGTVYDPANGIDGEVMDIFIRDGKIVE--PVSGGTKPAKVIDASGKLVMAGGVDS 58

Query: 111 HTHLA 115
           HTH+A
Sbjct: 59  HTHIA 63

Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. Length = 556

>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 53  SKILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
            + LI+GGTV+            D+ +E   + AV P+I    D +V+DA G  VMPG +
Sbjct: 2   KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-APDAEVVDARGMIVMPGLV 60

Query: 109 DPHTHL 114
           D H H 
Sbjct: 61  DTHRHT 66

Length = 449

>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 52  SSKILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
            + +LI+G  ++        +  D+ +EDG +VA+  N     D +V+DA GK V+PG +
Sbjct: 1   MTMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFV 60

Query: 109 DPHTHLAMEFM 119
           + HTHL    +
Sbjct: 61  NAHTHLDQTLL 71

Length = 421

>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 57  IKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           IK GTV    N  + +  D+++ DG +V      +     KV+DA+GK VM GG+D H+H
Sbjct: 1   IKNGTVYDPLNGINGEKMDIFIRDGKIVES---SSGAKPAKVIDASGKVVMAGGVDMHSH 57

Query: 114 LA 115
           +A
Sbjct: 58  IA 59

FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. Length = 541

>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 77  DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM--EFMGSETIDD 126
           DG +VAV   I    D +V+DA GK V PG ID H+HL +  E    ET D 
Sbjct: 1   DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDA 52

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359

>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 53  SKILIKGGTV---VNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
            +ILIK G V   +N  + +  D+ V+DG +V  + +       KV+DA+GK VMPGG+D
Sbjct: 3   MEILIKNGIVYDPLNGINGEKMDICVKDGKIV--EESEVSESKAKVIDASGKLVMPGGVD 60

Query: 110 PHTHLA 115
            H+H+A
Sbjct: 61  SHSHVA 66

Length = 575

>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 55  ILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGID 109
           ILI+ GT+V    +++    DV VEDG +VAV P + +      +V+DA GK VMPG ++
Sbjct: 1   ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVN 60

Query: 110 PHTHLAM 116
            HTHLAM
Sbjct: 61  THTHLAM 67

Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411

>gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           ILIK G V+   + ++  ADV +E   +V V+ NIN   D  V+DA+G  V PG I+ HT
Sbjct: 3   ILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKPAD-TVIDASGSVVSPGFINAHT 61

Query: 113 HLAM 116
           H  M
Sbjct: 62  HSPM 65

Length = 424

>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional

 Score = 56.4 bits (137), Expect = 6e-09
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPH 111
            L+K   V         D+ +  G ++A+  NIN+ D   D++V+DA+GK ++PG ID H
Sbjct: 3   TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQH 62

Query: 112 THLA 115
            H+ 
Sbjct: 63  VHII 66

Length = 388

>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 54  KILIKGGTVV--NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
            ++I+ GTVV         ADV + DG + A+ P ++     +V+DA G  V PG ID H
Sbjct: 1   DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILSTSAR-EVIDAAGLVVAPGFIDVH 59

Query: 112 TH 113
           TH
Sbjct: 60  TH 61

Length = 415

>gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 53  SKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
             ILIK   +V  + +      DV +ED  + AV   +++ D    +DATGK V+PG I 
Sbjct: 1   MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQ 60

Query: 110 PHTHL 114
            H HL
Sbjct: 61  GHIHL 65

Length = 445

>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 53  SKILIKGGTVVNAHHQQI-ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
           + +    G  +          V +EDG +VAV    I++    +V+DA GK V PG ID 
Sbjct: 10  AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDA 69

Query: 111 HTHLAM 116
           HTHL  
Sbjct: 70  HTHLGF 75

Length = 406

>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++IK   ++     +   V VEDG +VA+ P   + +  +++D  G++++PG ID H H 
Sbjct: 1   LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHG 60

Query: 115 AMEFMGSETIDDFFSGQAAALAG-GTT 140
                  +   +     A ALA  GTT
Sbjct: 61  GGGADFMDGTAEALKTIAEALAKHGTT 87

This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374

>gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 73  VYVEDGIVVAVQP----NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128
           + + DG + AV P            + +DA G+ V PG +D HTHL   F G    D+F 
Sbjct: 1   IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLV--FAGDRV-DEF- 56

Query: 129 SGQAAALAGGTTMHI 143
              AA LAG +   I
Sbjct: 57  ---AARLAGASYEEI 68

In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371

>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 52  SSKILIKGGTV--VNAHHQQIADVYVEDGIVVAVQPN--IN--VGDDVKVLDATGKFVMP 105
           ++ +++  G +  ++        V ++DG +VAV  +  +    G   +V+D  GKFV+P
Sbjct: 4   AADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLP 63

Query: 106 GGIDPHTHLAM 116
           G +D H HL  
Sbjct: 64  GFVDAHLHLIS 74

Length = 535

>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           +++K G +V+    +I   D+ +  G +V V       +  +V+DA G++++PG ID H 
Sbjct: 26  LVLKNGRIVDVVTGEIYKGDIAIAGGRIVGV-IGEYRAEATEVIDAAGRYIVPGFIDAHL 84

Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTT 140
           H+    +             A L  GTT
Sbjct: 85  HIESSMLTPSEFA------RAVLPHGTT 106

Length = 584

>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           I+IK   V+      +    V +EDG +  V      GD   V+DA G  VMPG ++ HT
Sbjct: 4   IIIKNAYVLTMDAGDLKKGSVVIEDGTITEVS-ESTPGDADTVIDAKGSVVMPGLVNTHT 62

Query: 113 HLAM 116
           H AM
Sbjct: 63  HAAM 66

Length = 430

>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 71  ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHL 114
             + +EDG +V V P  ++      +V+DA GK V PG ID HTHL
Sbjct: 29  GAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHL 74

Length = 406

>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 70  IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           + D+ +EDG + A+ P + V  D + +DA G+ V+P  +DPH HL
Sbjct: 14  LVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHL 58

Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. Length = 398

>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 54  KILIKGGTVVN--AHHQQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
           KI IKGG +++  A   + AD+YV  G + A+ Q       D K +DA+G  V PG +D 
Sbjct: 2   KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNAD-KTIDASGLIVCPGLVDL 60

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
              L     G E      S  AAA+AGG T
Sbjct: 61  SARLREP--GYEYKATLESEMAAAVAGGVT 88

Length = 425

>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 72  DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           DV +E+G + AV   +      +++DA G +V PG ID H H
Sbjct: 1   DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVH 42

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338

>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 41/231 (17%), Positives = 64/231 (27%), Gaps = 33/231 (14%)

Query: 108 IDPHTHLAM----------------EFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151
           ID H HL                  E    +  +D      A LAGG T  +D       
Sbjct: 2   IDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDM--GSTP 59

Query: 152 SLTAGFEAYEKKAKNS----------CMDYGFHMAITKWDEVVSDEMEV-MVKEKGINSF 200
             T    A E  A+ +           +      A    D        +    E G    
Sbjct: 60  PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119

Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260
           K    Y  +  ++DE L    +  + LG   ++HA          + ++ L   G     
Sbjct: 120 KLAGPY-TATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVI 178

Query: 261 --LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPN 309
             +S       E    A    E      Y++      A E + +  + G  
Sbjct: 179 GHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGA-EALRRLLELGIR 228

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275

>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 72  DVYVEDGIVVAV----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
            V V DG +VAV    +     G   +V+D  GK V+PG ID H+HL +
Sbjct: 1   AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLL 49

YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479

>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 55  ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           ++I+ G VV+       + DV ++ G + AV      GD  + +DATG  V PG ID H 
Sbjct: 21  LVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD--RTIDATGLVVAPGFIDLHA 78

Query: 113 H 113
           H
Sbjct: 79  H 79

Length = 509

>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 69  QIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127
           +IADV +EDG + A++P+I  +  D +++DA+G  + PG +D ++H + E  G E  +  
Sbjct: 20  RIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSH-SGE-PGFEERETL 77

Query: 128 FSGQAAALAGGTT 140
            S  AAA AGG T
Sbjct: 78  ASLAAAAAAGGFT 90

Length = 418

>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 95  VLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----------FSGQAAALAGGTTM 141
           V+D  GK +MPG ID HTHL  +                       +AA  AG TT+
Sbjct: 3   VIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTV 59

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342

>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 55  ILIKGGTVVNAHHQQI----ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGG 107
           +LI  GT +     +       + +E  ++V +     +     D + +DA GK +MPG 
Sbjct: 2   LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGL 61

Query: 108 IDPHTHL 114
           I+ H H+
Sbjct: 62  INSHNHI 68

Length = 442

>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 37/254 (14%)

Query: 72  DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
           ++ VEDG + +++ +       ++  A    ++P   D H H      G    +DF +G 
Sbjct: 17  EIEVEDGKIKSIKKDAGNIGKKELKGA----ILPAATDIHVHFRTP--GETEKEDFSTGT 70

Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDE 187
            +A+ GGTT  +D  +P N      + A+  K    A  + +D+  +   T  + ++ DE
Sbjct: 71  LSAIFGGTTFIMD--MPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNALILDE 128

Query: 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEG-FKRCKSLGALAMVHAENGDAVFEGQK 246
             +          K +M   G+   N   +  G  K+          HAE  + + + Q 
Sbjct: 129 RSI--------GLKVYMG--GTTNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQF 178

Query: 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV-HVMSMDAMEEIAKARK 305
               L       H L+RP     E   +A++  + ++    ++ HV S+D +      R+
Sbjct: 179 ESKNL-----RDHDLARPI----ECEIKAVKYVKNLDLKTKIIAHVSSIDVIGRF--LRE 227

Query: 306 AGPN--FLNTTIPL 317
             P+   LN  +PL
Sbjct: 228 VTPHHLLLNDDMPL 241

Length = 409

>gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 54  KILIKGGTVVNAHHQQIAD---VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
              +K G +   H   + D   V +EDG + AV P   +  D +++D  G  ++PG ID 
Sbjct: 1   MYALKNGRIFTGH--GVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDL 57

Query: 111 HTH-----LAMEFMGSETID 125
           H H       M+    ET++
Sbjct: 58  HIHGGGGADFMDAGSVETLE 77

Length = 380

>gnl|CDD|130246 TIGR01178, ade, adenine deaminase

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           I+IK   +++ ++ +I   D+ + +G +  V       + VKV+DA G++ +PG ID H 
Sbjct: 2   IVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY----NGVKVIDALGEYAVPGFIDAHI 57

Query: 113 HLAMEFM 119
           H+    +
Sbjct: 58  HIESSML 64

The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 552

>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function prediction only]

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 55  ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           IL+ GG +++      +I ++ + +G + A   +     + +++DA G  V PG ID H 
Sbjct: 6   ILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHV 64

Query: 113 H 113
           H
Sbjct: 65  H 65

Length = 386

>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 52  SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
             ++++    +V         + +EDG + A+ P  +       +DA G +++PG +D H
Sbjct: 1   MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGASALPGA--IDAEGDYLLPGLVDLH 58

Query: 112 T-HLAMEFM 119
           T +L     
Sbjct: 59  TDNLEKHLA 67

Length = 383

>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 5/161 (3%)

Query: 97  DATGKFVMPGGIDPHTH---LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
           DA G+ V+PG +D H H   L     G     +  +G AA    G T  +         L
Sbjct: 1   DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60

Query: 154 T-AGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
           T                      A+ +  E++  E   +     ++      A       
Sbjct: 61  TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG-PGLEALLREAKK 119

Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253
              +L+ G               +    +  G +   +L +
Sbjct: 120 AGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVAEDLHL 160

This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304

>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
           LIK   V    +    D+ +  G ++A++  +N+   ++V V+D  GK ++PG ID H H
Sbjct: 3   LIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVH 62

Query: 114 LA 115
           + 
Sbjct: 63  II 64

Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387

>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 102 FVMPGGIDPHTHLAMEFMGSETI-DDFFSGQAAALAGGTTMHIDF 145
            V+PG ID H HL    +  E   +   +G  A L  GTT  +D 
Sbjct: 1   IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDT 45

This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307

>gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 55  ILIKGGTVV---NAHHQQIAD--VYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
           + IK    +   +A  ++IAD  + VE G +V V P         +V DA G  V PG +
Sbjct: 3   LWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLV 62

Query: 109 DPHTHL 114
           + H H 
Sbjct: 63  NTHHHF 68

Length = 451

>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 71  ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
            D+ + DG + A+ P +      +V D  G   +PG +D H HL   F G
Sbjct: 17  VDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWG 66

Length = 391

>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++++   + +   +   D+ +  G + AV+P +   +  + +DA G+ V P  +DPH H+
Sbjct: 4   LIVRNANLPDG--RTGIDIGIAGGRIAAVEPGLQ-AEAAEEIDAAGRLVSPPFVDPHFHM 60

Length = 426

>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 9/153 (5%)

Query: 108 IDPHTHLAMEF--------MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
           ID H HL            M     D   +     L  G  + +   + +  S       
Sbjct: 1   IDAHAHLPGGSIPDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANNR 60

Query: 160 YEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI 218
              +A      +    A+   D E  + E+E  + E G    +      G  +++  L  
Sbjct: 61  VLAEALKRPGRFVGGAALPPPDPEDAAAELERRLAELGFRGVRLNPHPGGGPLLDPRLDD 120

Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
             F+    LG    +H   GDA  +       L
Sbjct: 121 PIFEALAELGLPVDLHTGFGDAGEDLDAAQPLL 153

These proteins are amidohydrolases that are related to pfam01979. Length = 272

>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 71  ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
            D+ + DG + A+ P     D++  +D  G+ V P  +D HTHL
Sbjct: 41  VDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHL 84

Length = 438

>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 55  ILIKGGTVVNA--HHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPH 111
           ++I+ G + +   +     DV + DG++ AV      G    + +DA G+ V PG ID H
Sbjct: 8   VVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVH 67

Query: 112 THLAMEFM 119
           TH   E +
Sbjct: 68  THYDAEVL 75

Length = 579

>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 66  HHQQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLA-MEFMG 120
            + +   + VE+G +VAV     +       V++ D  G  +MPG ID H H    E + 
Sbjct: 2   EYFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA 61

Query: 121 S 121
           S
Sbjct: 62  S 62

This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401

>gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 55  ILIKGGTVVNAHHQQ---IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
           ILIK   +V  + ++     +VY+E   +V V  ++N   D  ++DATGK VMPG I+ H
Sbjct: 3   ILIKNAWIVTQNEKREILQGNVYIEGNKIVYVG-DVNEEADY-IIDATGKVVMPGLINTH 60

Query: 112 THLAM 116
            H+ M
Sbjct: 61  AHVGM 65

Length = 418

>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 70  IADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126
           I  V +EDG++VA           +  +++D  GK V PG +D    +     G+E  + 
Sbjct: 22  IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRET 79

Query: 127 FFSGQAAALAGGTT 140
             S   AA AGG T
Sbjct: 80  IASASRAAAAGGVT 93

Length = 429

>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 73  VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
           + +  G +V +     +   +  +++D  G  V PG +DPHTHL   F G   +++F   
Sbjct: 6   ILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLV--FAGDR-VNEF--- 59

Query: 131 QAAALAGGTTMHI 143
               L G + + I
Sbjct: 60  -EMKLQGASYLEI 71

This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377

>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%)

Query: 55  ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDP 110
           ILI  G +++   +  +I ++ + + I+V            + +++ A G  V PG ID 
Sbjct: 5   ILITNGHIIDPARNINEINNLRIINDIIV---DADKYPVASETRIIHADGCIVTPGLIDY 61

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
           H H+   + G+E               G T  +D      GS  TA F+A+ +
Sbjct: 62  HAHVF--YDGTEG---GVRPDMYMPPNGVTTVVD-----AGSAGTANFDAFYR 104

Length = 379

>gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTH 113
           +LIK G  VN       D+ +EDG + AV   I      + +D  G  +V  G ID HTH
Sbjct: 3   LLIKNGRTVNG---TPVDIAIEDGKIAAVGTTITGSAK-QTIDLEGETYVSAGWIDDHTH 58

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown [Hypothetical proteins, Conserved]. Length = 365

>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
           +PG ID H HL  E  G+   +DF SG  AALAGG TM           +  A  +  + 
Sbjct: 5   LPGLIDVHVHLR-EP-GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQS 62

Query: 163 KA-KNSCMDYGFHMAIT 178
            A   +  DY F +  T
Sbjct: 63  LAQAKARCDYAFSIGAT 79

Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. Length = 344

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PLN02942	486	dihydropyrimidinase	100.0
PLN02795	505	allantoinase	100.0
KOG2584	522	consensus Dihydroorotase and related enzymes [Nucl	100.0
TIGR02033	454	D-hydantoinase D-hydantoinase. This model represen	100.0
PRK13404	477	dihydropyrimidinase; Provisional	100.0
PRK08323	459	phenylhydantoinase; Validated	100.0
cd01314	447	D-HYD D-hydantoinases (D-HYD) also called dihydrop	100.0
COG0044	430	PyrC Dihydroorotase and related cyclic amidohydrol	100.0
PRK07369	418	dihydroorotase; Provisional	100.0
TIGR03178	443	allantoinase allantoinase. This enzyme carries out	100.0
cd01315	447	L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas	100.0
PRK07627	425	dihydroorotase; Provisional	100.0
PRK06189	451	allantoinase; Provisional	100.0
PRK09059	429	dihydroorotase; Validated	100.0
PRK08044	449	allantoinase; Provisional	100.0
PRK08417	386	dihydroorotase; Provisional	100.0
PRK02382	443	dihydroorotase; Provisional	100.0
PRK09060	444	dihydroorotase; Validated	100.0
PRK09357	423	pyrC dihydroorotase; Validated	100.0
PRK09236	444	dihydroorotase; Reviewed	99.98
TIGR00857	411	pyrC_multi dihydroorotase, multifunctional complex	99.98
PRK07575	438	dihydroorotase; Provisional	99.97
cd01297	415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	99.96
PRK06687	419	chlorohydrolase; Validated	99.95
PRK09061	509	D-glutamate deacylase; Validated	99.95
PRK04250	398	dihydroorotase; Provisional	99.95
PRK15493	435	5-methylthioadenosine/S-adenosylhomocysteine deami	99.95
PRK01211	409	dihydroorotase; Provisional	99.95
cd01317	374	DHOase_IIa Dihydroorotase (DHOase), subgroup IIa;	99.94
TIGR03314	441	Se_ssnA putative selenium metabolism protein SsnA.	99.93
PRK00369	392	pyrC dihydroorotase; Provisional	99.93
cd01318	361	DHOase_IIb Dihydroorotase (DHOase), subgroup IIb;	99.93
PRK07203	442	putative chlorohydrolase/aminohydrolase; Validated	99.93
cd01298	411	ATZ_TRZ_like TRZ/ATZ family contains enzymes from	99.92
PRK06380	418	metal-dependent hydrolase; Provisional	99.92
PRK07228	445	N-ethylammeline chlorohydrolase; Provisional	99.92
PRK08203	451	hydroxydechloroatrazine ethylaminohydrolase; Revie	99.92
cd01302	337	Cyclic_amidohydrolases Cyclic amidohydrolases, inc	99.92
PRK09045	443	N-ethylammeline chlorohydrolase; Provisional	99.92
PRK09228	433	guanine deaminase; Provisional	99.92
PRK12393	457	amidohydrolase; Provisional	99.92
TIGR02967	401	guan_deamin guanine deaminase. This model describe	99.92
PRK15446	383	phosphonate metabolism protein PhnM; Provisional	99.91
PRK08393	424	N-ethylammeline chlorohydrolase; Provisional	99.91
cd01293	398	Bact_CD Bacterial cytosine deaminase and related m	99.91
PRK06038	430	N-ethylammeline chlorohydrolase; Provisional	99.91
cd01303	429	GDEase Guanine deaminase (GDEase). Guanine deamina	99.9
PRK08204	449	hypothetical protein; Provisional	99.9
PRK06151	488	N-ethylammeline chlorohydrolase; Provisional	99.9
PRK08418	408	chlorohydrolase; Provisional	99.9
COG3964	386	Predicted amidohydrolase [General function predict	99.89
COG0402	421	SsnA Cytosine deaminase and related metal-dependen	99.89
PRK05985	391	cytosine deaminase; Provisional	99.89
PRK07572	426	cytosine deaminase; Validated	99.88
PRK12394	379	putative metallo-dependent hydrolase; Provisional	99.88
PRK07213	375	chlorohydrolase; Provisional	99.88
TIGR02318	376	phosphono_phnM phosphonate metabolism protein PhnM	99.88
PRK13207	568	ureC urease subunit alpha; Reviewed	99.87
cd01316	344	CAD_DHOase The eukaryotic CAD protein is a trifunc	99.87
PRK13308	569	ureC urease subunit alpha; Reviewed	99.87
PRK13206	573	ureC urease subunit alpha; Reviewed	99.87
PRK09230	426	cytosine deaminase; Provisional	99.87
TIGR02022	455	hutF formiminoglutamate deiminase. In some species	99.87
cd01312	381	Met_dep_hydrolase_D Metallo-dependent hydrolases,	99.86
PRK14085	382	imidazolonepropionase; Provisional	99.86
TIGR01178	552	ade adenine deaminase. The family described by thi	99.86
cd00375	567	Urease_alpha Urease alpha-subunit; Urease is a nic	99.86
cd01313	418	Met_dep_hydrolase_E Metallo-dependent hydrolases,	99.86
PRK09356	406	imidazolonepropionase; Validated	99.85
PRK13985	568	ureB urease subunit beta; Provisional	99.85
TIGR01792	567	urease_alph urease, alpha subunit. This model desc	99.85
PRK09237	380	dihydroorotase; Provisional	99.85
TIGR01975	389	isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i	99.84
PRK09229	456	N-formimino-L-glutamate deiminase; Validated	99.84
cd01307	338	Met_dep_hydrolase_B Metallo-dependent hydrolases,	99.84
PRK06846	410	putative deaminase; Validated	99.84
PRK10657	388	isoaspartyl dipeptidase; Provisional	99.84
PRK13309	572	ureC urease subunit alpha; Reviewed	99.83
PLN02303	837	urease	99.82
COG1001	584	AdeC Adenine deaminase [Nucleotide transport and m	99.82
cd01294	335	DHOase Dihydroorotase (DHOase) catalyzes the rever	99.81
PRK10027	588	cryptic adenine deaminase; Provisional	99.81
PRK07583	438	cytosine deaminase-like protein; Validated	99.81
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	99.8
TIGR01224	377	hutI imidazolonepropionase. This enzyme catalyzes	99.78
cd01308	387	Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy	99.78
TIGR03583	365	EF_0837 probable amidohydrolase EF_0837/AHA_3915.	99.77
cd01296	371	Imidazolone-5PH Imidazolonepropionase/imidazolone-	99.76
cd00854	374	NagA N-acetylglucosamine-6-phosphate deacetylase,	99.75
COG1574	535	Predicted metal-dependent hydrolase with the TIM-b	99.74
TIGR00221	380	nagA N-acetylglucosamine-6-phosphate deacetylase.	99.72
COG1228	406	HutI Imidazolonepropionase and related amidohydrol	99.7
PRK11170	382	nagA N-acetylglucosamine-6-phosphate deacetylase;	99.67
KOG3968	439	consensus Atrazine chlorohydrolase/guanine deamina	99.67
PLN02599	364	dihydroorotase	99.67
PF13594	68	Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1	99.65
cd01300	479	YtcJ_like YtcJ_like metal dependent amidohydrolase	99.65
TIGR03121	556	one_C_dehyd_A formylmethanofuran dehydrogenase sub	99.62
cd01304	541	FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub	99.61
COG3653	579	N-acyl-D-aspartate/D-glutamate deacylase [Secondar	99.6
PRK05451	345	dihydroorotase; Provisional	99.59
TIGR00856	341	pyrC_dimer dihydroorotase, homodimeric type. This	99.56
cd01295	422	AdeC Adenine deaminase (AdeC) directly deaminates	99.54
COG3454	377	Metal-dependent hydrolase involved in phosphonate	99.51
COG1820	380	NagA N-acetylglucosamine-6-phosphate deacetylase [	99.5
COG0804	568	UreC Urea amidohydrolase (urease) alpha subunit [A	99.49
cd01305	263	archeal_chlorohydrolases Predicted chlorohydrolase	99.46
cd01309	359	Met_dep_hydrolase_C Metallo-dependent hydrolases,	99.35
PRK06886	329	hypothetical protein; Validated	99.3
cd01292	275	metallo-dependent_hydrolases Superfamily of metall	99.19
COG1229	575	FwdA Formylmethanofuran dehydrogenase subunit A [E	99.06
PF01979	333	Amidohydro_1: Amidohydrolase family; InterPro: IPR	98.76
cd01306	325	PhnM PhnM is believed to be a subunit of the membr	98.69
PF13147	304	Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2	98.68
PF12890	142	DHOase: Dihydro-orotase-like; InterPro: IPR024403	98.62
COG0084	256	TatD Mg-dependent DNase [DNA replication, recombin	98.58
KOG2902	344	consensus Dihydroorotase [Nucleotide transport and	98.53
PRK10812	265	putative DNAse; Provisional	98.51
cd01310	251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	98.49
KOG3892	407	consensus N-acetyl-glucosamine-6-phosphate deacety	98.47
TIGR00010	252	hydrolase, TatD family. Several genomes have multi	98.47
PRK10425	258	DNase TatD; Provisional	98.37
PRK11449	258	putative deoxyribonuclease YjjV; Provisional	98.36
cd00530	293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	98.35
PRK09358	340	adenosine deaminase; Provisional	98.3
PF01026	255	TatD_DNase: TatD related DNase The Pfam entry find	98.23
COG0418	344	PyrC Dihydroorotase [Nucleotide transport and meta	98.16
COG1099	254	Predicted metal-dependent hydrolases with the TIM-	98.15
cd01320	325	ADA Adenosine deaminase (ADA) is a monomeric zinc	98.15
TIGR01430	324	aden_deam adenosine deaminase. This family include	98.13
PRK09875	292	putative hydrolase; Provisional	98.04
PF02126	308	PTE: Phosphotriesterase family; InterPro: IPR00155	97.93
COG1735	316	Php Predicted metal-dependent hydrolase with the T	97.7
cd01311	263	PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC)	97.66
cd00443	305	ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin	97.21
cd01321	345	ADGF Adenosine deaminase-related growth factors (A	96.89
PF00449	121	Urease_alpha: Urease alpha-subunit, N-terminal dom	96.54
PTZ00124	362	adenosine deaminase; Provisional	96.15
PRK08392	215	hypothetical protein; Provisional	95.97
PF07969	404	Amidohydro_3: Amidohydrolase family; InterPro: IPR	95.81
COG1816	345	Add Adenosine deaminase [Nucleotide transport and	95.68
COG0826	347	Collagenase and related proteases [Posttranslation	95.47
PF00962	331	A_deaminase: Adenosine/AMP deaminase immunodeficie	95.38
PF04909	273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	95.19
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	94.38
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	93.73
PRK12330	499	oxaloacetate decarboxylase; Provisional	93.72
PRK08609	570	hypothetical protein; Provisional	93.35
COG1387	237	HIS2 Histidinol phosphatase and related hydrolases	93.29
PRK12581	468	oxaloacetate decarboxylase; Provisional	93.11
PRK14042	596	pyruvate carboxylase subunit B; Provisional	92.94
PF07969	404	Amidohydro_3: Amidohydrolase family; InterPro: IPR	92.59
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	92.34
PRK01060	281	endonuclease IV; Provisional	92.3
COG2159	293	Predicted metal-dependent hydrolase of the TIM-bar	92.2
KOG3020	296	consensus TatD-related DNase [Replication, recombi	92.04
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	91.95
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	91.84
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.74
COG3618	279	Predicted metal-dependent hydrolase of the TIM-bar	91.64
PRK07328	269	histidinol-phosphatase; Provisional	91.45
TIGR01431	479	adm_rel adenosine deaminase-related growth factor.	90.47
PRK12331	448	oxaloacetate decarboxylase; Provisional	90.03
PRK13352	431	thiamine biosynthesis protein ThiC; Provisional	89.15
PRK07945	335	hypothetical protein; Provisional	88.94
PRK09358	340	adenosine deaminase; Provisional	88.75
PRK09856	275	fructoselysine 3-epimerase; Provisional	88.52
PRK14041	467	oxaloacetate decarboxylase; Provisional	88.23
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	88.0
PRK07709	285	fructose-bisphosphate aldolase; Provisional	87.38
PRK09248	246	putative hydrolase; Validated	87.23
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	86.78
KOG1097	399	consensus Adenine deaminase/adenosine deaminase [N	86.73
TIGR01430	324	aden_deam adenosine deaminase. This family include	86.4
PRK15446	383	phosphonate metabolism protein PhnM; Provisional	86.22
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	86.18
PRK14040	593	oxaloacetate decarboxylase; Provisional	86.16
PTZ00372	413	endonuclease 4-like protein; Provisional	85.98
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	85.58
TIGR00190	423	thiC thiamine biosynthesis protein ThiC. The thiC	85.52
PRK14040	593	oxaloacetate decarboxylase; Provisional	85.52
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	85.42
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	85.18
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	85.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	84.83
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	84.58
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	84.31
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	84.11
PRK08005	210	epimerase; Validated	83.5
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	83.02
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	83.02
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	82.87
PRK09282	592	pyruvate carboxylase subunit B; Validated	82.62
PRK12999	1146	pyruvate carboxylase; Reviewed	82.22
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	81.37
cd01308	387	Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy	81.31
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	81.27
COG1831	285	Predicted metal-dependent hydrolase (urease superf	81.23
PRK03170	292	dihydrodipicolinate synthase; Provisional	81.2
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	81.15
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	81.02
PRK05835	307	fructose-bisphosphate aldolase; Provisional	80.84
PRK09230	426	cytosine deaminase; Provisional	80.76
PRK00912	237	ribonuclease P protein component 3; Provisional	80.54
PRK10657	388	isoaspartyl dipeptidase; Provisional	80.38
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	80.21
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	80.1
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	80.09

>PLN02942 dihydropyrimidinase

Probab=100.00  E-value=1.3e-37  Score=297.62  Aligned_cols=271  Identities=82%  Similarity=1.278  Sum_probs=227.4

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      +.+++|+|++|++++....++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.++..+...+++++++.
T Consensus         4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s   83 (486)
T PLN02942          4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQ   83 (486)
T ss_pred             CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCCCCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHH
Confidence            35689999999987766788999999999999976432335689999999999999999999998755567789999999


Q ss_pred             HHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079          132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM  211 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~  211 (331)
                      ++++++||||+.||..+......+.++.......+..+++.++.+.........+++.++.++.|+..+++++++++...
T Consensus        84 ~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~  163 (486)
T PLN02942         84 AAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLM  163 (486)
T ss_pred             HHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCCCCC
Confidence            99999999999999755544445666665555555667776665444333334566777764568888999998877677


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      ++++.+.+.++.++++|.++++|+|+.++.....+.+...|..++..+...+|...|..++.+.+.++...|.++|++|+
T Consensus       164 ~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~  243 (486)
T PLN02942        164 VTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHV  243 (486)
T ss_pred             CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            78999999999999999999999999888877777778889888888888899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++.++++.++++|++|++|++++||||+.+.
T Consensus       244 s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~  274 (486)
T PLN02942        244 MSIDAMEEIARARKSGQRVIGEPVVSGLVLD  274 (486)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEECchhheeC
Confidence            9999999999999999999999999999865

>PLN02795 allantoinase

Probab=100.00  E-value=7.9e-36  Score=285.48  Aligned_cols=276  Identities=25%  Similarity=0.307  Sum_probs=215.8

Q ss_pred             CCCCCCCCCCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC---CCceEEeCCCCeeecccccccccccCCCC
Q 020079           43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        43 ~~~~~~~~~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      .+.+++..++.+++|+|++|++++....++|+|+||+|++|++....+   ++.++||++|++|+|||||+|+|+..+  
T Consensus        34 ~~~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~--  111 (505)
T PLN02795         34 GRDRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEP--  111 (505)
T ss_pred             cccccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCC--
Confidence            456677777789999999999987777899999999999999754321   246899999999999999999999876  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcC-CCC-CcHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhC
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKG  196 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  196 (331)
                      +...++++..+.+.++.+||||++||.. ..+ ....+.++...+... ...+++.++.+......+..+++.++. +.|
T Consensus       112 ~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~-~~G  190 (505)
T PLN02795        112 GRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELL-DAG  190 (505)
T ss_pred             CccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHH-HCC
Confidence            4456789999999999999999999973 222 244555555554443 356676665544332334456666665 678


Q ss_pred             CCeEEEEEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079          197 INSFKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT  273 (331)
Q Consensus       197 ~~~ik~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~  273 (331)
                      +.++|.|+.+++..   ..+++.+.++++.++++|+++++|+|+.+...... . ...|......+...+|...|..++.
T Consensus       191 ~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~-~-~~~~~~~~~~~~~~rP~~aE~~ai~  268 (505)
T PLN02795        191 ALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS-R-LDADPRSYSTYLKSRPPSWEQEAIR  268 (505)
T ss_pred             CcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhh-h-hhcCCcChhHhcccCCHHHHHHHHH
Confidence            88899998765433   56789999999999999999999999877553221 1 1233334445566789999999999


Q ss_pred             HHHHHHHhc-------CCCEEEEeCCCH-HHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          274 RAIRLAEFV-------NTPLYVVHVMSM-DAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       274 ~~~~l~~~~-------g~~~~i~H~~~~-~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +.+.++...       |+++|++|+++. ++++.++++|++|++|+++|||||+.+..
T Consensus       269 ~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~  326 (505)
T PLN02795        269 QLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSA  326 (505)
T ss_pred             HHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccH
Confidence            999999999       999999999999 99999999999999999999999997653

>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=269.62  Aligned_cols=259  Identities=61%  Similarity=0.974  Sum_probs=243.3

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      ..++|+|++|+..+.....||+++||.|.+|+++...+.+.++||+.|++|+||.||.|+|+.+++.|....++|+++.+
T Consensus        14 ~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GTk   93 (522)
T KOG2584|consen   14 NRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTK   93 (522)
T ss_pred             cceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCCCceEEecCCcEEecCccCccceeccccCCccchhhhhcccH
Confidence            45899999999988889999999999999999998878889999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCC
Q 020079          133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF  210 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~  210 (331)
                      +++++|+|++.|+..+... +..+.++.+++.+. ....||+++++++.+.+...+++.-+.++.|++.|++|+.+...+
T Consensus        94 AAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk~~~  173 (522)
T KOG2584|consen   94 AALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYKDLY  173 (522)
T ss_pred             HHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeecccc
Confidence            9999999999999877764 78889999988875 589999999999999888888998888789999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ++++++|.+.++.+++.|....+|+|+.+.+++.++++.++|..+|++|...+|+..|.+++.+.+.++...++++.++|
T Consensus       174 ~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvh  253 (522)
T KOG2584|consen  174 MVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVH  253 (522)
T ss_pred             ccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCEE
Q 020079          291 VMSMDAMEEIAKARKAGPNFL  311 (331)
Q Consensus       291 ~~~~~~~~~i~~~~~~Gi~v~  311 (331)
                      +.+.++.+.|.++|++|--|.
T Consensus       254 Vmsksaa~~Ia~aRk~g~~v~  274 (522)
T KOG2584|consen  254 VMSKSAADAIALARKKGRVVF  274 (522)
T ss_pred             EeehhHHHHHHHHHhcCceee
Confidence            999888899999999886543

>TIGR02033 D-hydantoinase D-hydantoinase

Probab=100.00  E-value=1.6e-35  Score=282.44  Aligned_cols=268  Identities=54%  Similarity=0.800  Sum_probs=217.1

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA  134 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~  134 (331)
                      ++|+|++|++++...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+..+..++++++.+.+.+
T Consensus         1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a   80 (454)
T TIGR02033         1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAA   80 (454)
T ss_pred             CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHH
Confidence            47999999998777789999999999999975422334589999999999999999999987644456789999999999


Q ss_pred             HhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC
Q 020079          135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI  212 (331)
Q Consensus       135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~  212 (331)
                      +++||||++||....+. ...+.++....... ...+++.++........+..++..+...+.|+..+|++++++..+.+
T Consensus        81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~  160 (454)
T TIGR02033        81 AAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKNLLMV  160 (454)
T ss_pred             HhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Confidence            99999999999755433 45555555544432 24555555443322333434453333335788899999988777888


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM  292 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~  292 (331)
                      +++.++++++.|+++|+++++|+|+..+.....+++.+.|......|...+|...|..++.+.+.++...+.++|++|++
T Consensus       161 ~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s  240 (454)
T TIGR02033       161 DDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVS  240 (454)
T ss_pred             CHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            99999999999999999999999988877777777788898888888888999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          293 SMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       293 ~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      +..+++.++.+|+.|++|++++||||+.+.
T Consensus       241 ~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~  270 (454)
T TIGR02033       241 TASAVDEIAEAREKGQPVYGETCPQYLLLD  270 (454)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEcCchheeec
Confidence            999999999999999999999999998543

This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.

>PRK13404 dihydropyrimidinase; Provisional

Probab=100.00  E-value=1.9e-35  Score=281.75  Aligned_cols=268  Identities=37%  Similarity=0.610  Sum_probs=219.1

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC-CCCCChhhHHHH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSG  130 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~-~~~~~~~~~~~~  130 (331)
                      +.+++|+|++|+++.....++|+|+||+|++|++..  +.+.++||++|++|+|||||+|+|+..+. .+....+++...
T Consensus         3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~   80 (477)
T PRK13404          3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTG   80 (477)
T ss_pred             CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--CCCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHH
Confidence            357899999999977666789999999999998753  23568999999999999999999997641 134457889999


Q ss_pred             HHHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhh-HHHHHHHHHHhCCCeEEEEEecC
Q 020079          131 QAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVV-SDEMEVMVKEKGINSFKFFMAYK  207 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ik~~~~~~  207 (331)
                      .+.++.+||||++|+....+ ....+.++..+... ....++++++.......++. .+++.++. +.|+..||+|+++.
T Consensus        81 s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~-~~G~~~iKi~~~~~  159 (477)
T PRK13404         81 TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALI-AQGYTSFKVFMTYD  159 (477)
T ss_pred             HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHH-HcCCCEEEEEecCC
Confidence            99999999999999864322 24556665554443 33567776665544333333 35677777 68999999997643


Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079          208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY  287 (331)
Q Consensus       208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~  287 (331)
                      + ...+++.+.++++.|+++|.++.+|+|+.+.+....+.+.+.|......+...+|...|..++.+.+.+++.+|+++|
T Consensus       160 ~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h  238 (477)
T PRK13404        160 D-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL  238 (477)
T ss_pred             C-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence            3 456889999999999999999999999988776665677788988888888889999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      ++|+++..+++.++++|++|++|+++|||||+.+..
T Consensus       239 i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~  274 (477)
T PRK13404        239 IVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTA  274 (477)
T ss_pred             EEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCH
Confidence            999999999999999999999999999999998764

>PRK08323 phenylhydantoinase; Validated

Probab=100.00  E-value=1.9e-35  Score=282.26  Aligned_cols=264  Identities=53%  Similarity=0.821  Sum_probs=220.4

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|++|++++...+++|+|+||+|++|++.    ++.++||++|++|+|||||+|+|+..++.+...+++++.+.+.
T Consensus         2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~   77 (459)
T PRK08323          2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRA   77 (459)
T ss_pred             cEEEECCEEEcCCCceEEEEEEECCEEEEEecC----CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHH
Confidence            489999999998777789999999999999875    2458999999999999999999998765444578889888999


Q ss_pred             HHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079          134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM  211 (331)
Q Consensus       134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~  211 (331)
                      ++++||||++|+....+. ...+.++...... .....++.++......+.+..+++.++. +.|...+|.++++++.+.
T Consensus        78 a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~  156 (459)
T PRK08323         78 AACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELV-EEGITSFKLFMAYKGALM  156 (459)
T ss_pred             HHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHH-HcCCCEEEEEEecCCCCC
Confidence            999999999999755443 4555555554443 2345666555433333445567787777 678889999998877778


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      ++.+++.++++.|+++|.++++|+|+.++.....+.+...|......+...+|...|..++.+.+.++..+|.++|++|+
T Consensus       157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~  236 (459)
T PRK08323        157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV  236 (459)
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            89999999999999999999999998888777777777788888888888899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++.++++.++.+|++|++|++++||||+.+.
T Consensus       237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~  267 (459)
T PRK08323        237 SCKEALEAIRRARARGQRVFGETCPQYLLLD  267 (459)
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEcCccceeec
Confidence            9999999999999999999999999977743

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin

Probab=100.00  E-value=1.9e-35  Score=281.24  Aligned_cols=267  Identities=55%  Similarity=0.850  Sum_probs=219.1

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA  134 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~  134 (331)
                      ++|+|++|++++...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+.+++....++++++.+.+.+
T Consensus         1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a   80 (447)
T cd01314           1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAA   80 (447)
T ss_pred             CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCCCCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHH
Confidence            47999999998777789999999999999975432234689999999999999999999987643346788999999999


Q ss_pred             HhCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC
Q 020079          135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI  212 (331)
Q Consensus       135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~  212 (331)
                      +++||||++||....+ ....+.++...... .+..+++.++........+.++++.++. +.|...+|++++++..+.+
T Consensus        81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~-~~g~~~ik~~~~~~~~~~~  159 (447)
T cd01314          81 AAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELV-KKGISSFKVFMAYKGLLMV  159 (447)
T ss_pred             HhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHH-HcCCCEEEEEeccCCCCCC
Confidence            9999999999975443 34555555544332 2345555554443333445567777777 4788899999988888888


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM  292 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~  292 (331)
                      +++.++++++.|+++|+++++|+|+..+.....+++...|....+.+...+|...|..++.+.+.+++..+.++|++|++
T Consensus       160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s  239 (447)
T cd01314         160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS  239 (447)
T ss_pred             CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            99999999999999999999999988888777777777788877777778999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          293 SMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       293 ~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      +..+++.++++|++|++|++++||||+.+.
T Consensus       240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~  269 (447)
T cd01314         240 SKEAADEIARARKKGLPVYGETCPQYLLLD  269 (447)
T ss_pred             CHHHHHHHHHHHHCCCeEEEecCchhheeC
Confidence            999999999999999999999999997654

The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.

>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.3e-35  Score=275.84  Aligned_cols=260  Identities=28%  Similarity=0.411  Sum_probs=219.4

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|+++++++....++|+|+||+|++|++.....++.++||++|++++||+||.|+|+..+  |...+|++.++.++
T Consensus         2 ~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~~~~~iiD~~g~~v~PG~ID~HVH~rep--g~~~ke~~~tgs~A   79 (430)
T COG0044           2 DLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHFREP--GFEHKETFETGSRA   79 (430)
T ss_pred             cEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCCCCCcEEECCCCEEccCeeEEEEecCCC--CcchhhhHHHHHHH
Confidence            4799999999997788999999999999999864433567999999999999999999999999  88999999999999


Q ss_pred             HHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079          134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM  211 (331)
Q Consensus       134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~  211 (331)
                      ++++|||+++||.+..+. ...+.++....... ...+++.++.+.+..+....+.+ +.. .  ..+++.|++... ..
T Consensus        80 Aa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~-~~~-~--~~g~~~F~~~~~-~~  154 (430)
T COG0044          80 AAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELT-ERG-V--EAGFKGFMDDST-GA  154 (430)
T ss_pred             HHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhh-hhh-h--ccceEEEecCCc-Cc
Confidence            999999999999876655 55666666666655 68889998888877654322222 222 1  455677776543 45


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      .+.+.+++.++++++.|.++.+|+|+++...   ......|...++.+...+|...|..++.+.+.++..+|.++|++|.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~---~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~Hi  231 (430)
T COG0044         155 LDDDVLEEALEYAAELGALILVHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHI  231 (430)
T ss_pred             CCHHHHHHHHHHHHhcCCeEEEecCChhHhh---hHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence            6889999999999999999999999987655   2345678888888888999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      |+.++++.++.+|..|++|++++||||+.+..
T Consensus       232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~  263 (430)
T COG0044         232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDE  263 (430)
T ss_pred             CCHHHHHHHHHHhhcCCceEEeecchheEccH
Confidence            99999999999999999999999999998874

>PRK07369 dihydroorotase; Provisional

Probab=100.00  E-value=5.3e-35  Score=273.80  Aligned_cols=261  Identities=23%  Similarity=0.251  Sum_probs=207.6

Q ss_pred             CccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCC-CCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079           52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF  128 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~  128 (331)
                      |.+++|+|++|+++..  ...++|+|+||+|++|++.... +.+.++||++|++|+|||||+|+|+..+  +....+++.
T Consensus         1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~~iDa~G~~vlPG~ID~H~H~~~~--~~~~~e~~~   78 (418)
T PRK07369          1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEP--GFEERETLA   78 (418)
T ss_pred             CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccCCCCCEEEECCCCEEecCEEecccccCCC--CcCCCccHH
Confidence            3568999999998543  3678999999999999875432 2356899999999999999999999887  667789999


Q ss_pred             HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCC-ChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079          129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKFFMA  205 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~  205 (331)
                      ++.++++++||||++||.+..+. ...+.++..++... .+.+++.++...+.. ..+.++++.++. +.|+..++.   
T Consensus        79 s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~-~~Gv~~f~~---  154 (418)
T PRK07369         79 SLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELA-AAGVVGFTD---  154 (418)
T ss_pred             HHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHH-HCCCEEEEC---
Confidence            99999999999999999865433 45566666555543 466788777665543 234567777776 678877762   


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079          206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP  285 (331)
Q Consensus       206 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~  285 (331)
                        +....+...+.++++.+++.|.++.+|+|+.+.....   +...|......+...+|+..|..++.+.+.+++.+|++
T Consensus       155 --~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~  229 (418)
T PRK07369        155 --GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNG---VMREGLLALRLGLPGDPASAETTALAALLELVAAIGTP  229 (418)
T ss_pred             --CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcC---cccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCc
Confidence              1223466788899999999999999999988764322   23444444555666789999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          286 LYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       286 ~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +|++|+|+.++++.++++|++|++|+++|||||+.+..
T Consensus       230 ~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~  267 (418)
T PRK07369        230 VHLMRISTARSVELIAQAKARGLPITASTTWMHLLLDT  267 (418)
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccH
Confidence            99999999999999999999999999999999998764

>TIGR03178 allantoinase allantoinase

Probab=100.00  E-value=9.6e-34  Score=268.76  Aligned_cols=262  Identities=32%  Similarity=0.448  Sum_probs=213.6

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|++|+++++...++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+  +...++++.++.+.
T Consensus         1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~   77 (443)
T TIGR03178         1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-GPAAKIIDAGGLVVFPGVVDTHVHINEP--GRTEWEGFETGTRA   77 (443)
T ss_pred             CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeccEeccccccCCC--CccccchHHHHHHH
Confidence            47899999999887778999999999999997532 2356899999999999999999999876  45567888899999


Q ss_pred             HHhCCceEEecCc-CCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC-
Q 020079          134 ALAGGTTMHIDFV-IPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS-  209 (331)
Q Consensus       134 ~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~-  209 (331)
                      ++++||||++||. +..+. ...+.+....+... ...+++.++.+..   .+..+++.++. +.|+..+|+|+++.+. 
T Consensus        78 ~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~-~~G~~~ik~~~~~~~~~  153 (443)
T TIGR03178        78 AAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELD-EAGVVGFKAFLSPSGDD  153 (443)
T ss_pred             HHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHH-HCCCcEEEEEecccCCC
Confidence            9999999999996 22222 34445554444433 3566766554332   23355666666 6899999999875432 


Q ss_pred             --CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079          210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY  287 (331)
Q Consensus       210 --~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~  287 (331)
                        ...+.+.+.++++.++++|+++++|+|+.+......+.+...|......+...+|...|..++.+.+.+++++|+++|
T Consensus       154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vh  233 (443)
T TIGR03178       154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVH  233 (443)
T ss_pred             CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence              256788999999999999999999999988777666677888888888887889999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++|+++..+++.+++++++|+++++++||||+.+.
T Consensus       234 i~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~  268 (443)
T TIGR03178       234 VVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLT  268 (443)
T ss_pred             EEeCCCHHHHHHHHHHHHCCCcEEEEECccceEec
Confidence            99999999999999999999999999999998764

This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.

>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)

Probab=100.00  E-value=1.3e-33  Score=268.70  Aligned_cols=263  Identities=31%  Similarity=0.404  Sum_probs=210.9

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|++|++++...+++|+|+||||++|++....+++.++||++|++|+|||||+|+|+..+  +....+++.+..++
T Consensus         1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~~~~~~iDa~G~~v~PG~ID~H~H~~~~--~~~~~e~~~~~s~a   78 (447)
T cd01315           1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHINEP--GRTEWEGFETGTKA   78 (447)
T ss_pred             CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEeccEeeceeccCCC--CccccccHHHHHHH
Confidence            4799999999987777899999999999999864323457899999999999999999999876  44567888899999


Q ss_pred             HHhCCceEEecCcC-CC-CCcHHHHHHHHHHHhcc-ceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC-
Q 020079          134 ALAGGTTMHIDFVI-PI-NGSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS-  209 (331)
Q Consensus       134 ~l~~GvTtv~d~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~-  209 (331)
                      ++++||||++||.. .. .....+.++...+.... ..+++.++.+...   ...++++++. +.|+.++|+++++... 
T Consensus        79 al~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~ei~~l~-~~G~~giKv~~~~~~~~  154 (447)
T cd01315          79 AAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQLRPLD-EAGVVGFKCFLCPSGVD  154 (447)
T ss_pred             HHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecC---CCHHHHHHHH-HcCCcEEEEEecccCCC
Confidence            99999999999962 11 22344555555444432 5666665543322   2345666666 6799999998765432 


Q ss_pred             --CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079          210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY  287 (331)
Q Consensus       210 --~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~  287 (331)
                        ...+.+.+.++++.|+++|+++.+|+|+.+............|......+...+|...|..++.+.+.++++.|+++|
T Consensus       155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ih  234 (447)
T cd01315         155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLH  234 (447)
T ss_pred             CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence              235788999999999999999999999887766665566666766666677778999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++|.++..+++.+++++++|.+|++++||||+.+.
T Consensus       235 i~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~  269 (447)
T cd01315         235 IVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFT  269 (447)
T ss_pred             EEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEc
Confidence            99999999999999999999999999999998764

But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.

>PRK07627 dihydroorotase; Provisional

Probab=100.00  E-value=2.2e-34  Score=270.35  Aligned_cols=260  Identities=20%  Similarity=0.147  Sum_probs=196.2

Q ss_pred             cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      +++|+|++|+++..  ..+++|+|+||||++|++.....++.++||++|++|+|||||+|+|+..+  +....+++.++.
T Consensus         2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~iDa~g~~vlPG~iD~H~H~~~~--g~~~~e~~~t~s   79 (425)
T PRK07627          2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNADKTIDASGLIVCPGLVDLSARLREP--GYEYKATLESEM   79 (425)
T ss_pred             eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCCCCCeEEECCCCEEeccEEeccccccCC--CccccCcHHHHH
Confidence            58999999998654  35789999999999998753222456899999999999999999999877  666788999999


Q ss_pred             HHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeecccccccc-CCChhhHHHHHHHHHHhCCCeEEEEEecCC
Q 020079          132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAYKG  208 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~  208 (331)
                      ++++.+||||+++|....+. ...+.++....... ....++..+.... ..+.+.+.++.++. +.|+..+|.+    .
T Consensus        80 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~-~~G~~~fk~~----~  154 (425)
T PRK07627         80 AAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELT-EAGCVGFSQA----N  154 (425)
T ss_pred             HHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHH-hCCEEEEEcC----C
Confidence            99999999999998654332 33333333332222 2333433333222 22345567777776 6788888743    1


Q ss_pred             CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEE
Q 020079          209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV  288 (331)
Q Consensus       209 ~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i  288 (331)
                      ....+...+.++++.+++.|.++.+|+|+......   .....|....+.+...+|+..|..++.+.+.+++.+|+++|+
T Consensus       155 ~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~---~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi  231 (425)
T PRK07627        155 VPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRG---GVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHL  231 (425)
T ss_pred             cccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhC---CCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEE
Confidence            22457788999999999999999999998754321   111222223334455689999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          289 VHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       289 ~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +|+|+..+++.++++|++|++|+++|||||+.+..
T Consensus       232 ~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~  266 (425)
T PRK07627        232 ARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLID  266 (425)
T ss_pred             EeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeH
Confidence            99999999999999999999999999999998763

>PRK06189 allantoinase; Provisional

Probab=100.00  E-value=6.9e-33  Score=263.22  Aligned_cols=266  Identities=28%  Similarity=0.378  Sum_probs=211.9

Q ss_pred             CCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079           51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG  130 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~  130 (331)
                      |+.+++|+|++|++++...+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..+  +....+++.++
T Consensus         1 ~~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~-~~~~~iD~~g~~vlPG~ID~H~H~~~~--~~~~~~~~~~~   77 (451)
T PRK06189          1 MMYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISS-PAREIIDADGLYVFPGMIDVHVHFNEP--GRTHWEGFATG   77 (451)
T ss_pred             CCccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCC-CCCeEEECCCCEEecCEEEeeeccCCC--CCCCcccHHHH
Confidence            346789999999998877789999999999999875432 346899999999999999999999876  45567899999


Q ss_pred             HHHHHhCCceEEecCc-CC-CCCcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079          131 QAAALAGGTTMHIDFV-IP-INGSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK  207 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~  207 (331)
                      .+.++++||||+++|. +. ......+.+....+.. ..+.+++.++....   .+..+++..+. +.|+..+|.|++..
T Consensus        78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~l~~l~-~~Gv~~~k~f~~~~  153 (451)
T PRK06189         78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLV---PGNLEHLRELA-EAGVIGFKAFMSNS  153 (451)
T ss_pred             HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccc---ccCHHHHHHHH-HcCCcEEEEEcccc
Confidence            9999999999999996 21 1123334444444433 34677777654332   22355677776 78999999987542


Q ss_pred             C---CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC
Q 020079          208 G---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT  284 (331)
Q Consensus       208 ~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~  284 (331)
                      +   ....+...+.++++.+++.|.++.+|+|+.+........+...|..+...++..+|...|..++.+.+.+++++|.
T Consensus       154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~  233 (451)
T PRK06189        154 GTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGC  233 (451)
T ss_pred             CCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCC
Confidence            2   2245677888999999999999999999887665554556677877777777788999999999999999999999


Q ss_pred             CEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          285 PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       285 ~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      ++|++|+++..+++.++++|++|++|+++|||||+.+..
T Consensus       234 ~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~  272 (451)
T PRK06189        234 PLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTE  272 (451)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCH
Confidence            999999999999999999999999999999999987653

>PRK09059 dihydroorotase; Validated

Probab=100.00  E-value=2.6e-33  Score=263.49  Aligned_cols=262  Identities=19%  Similarity=0.217  Sum_probs=201.0

Q ss_pred             CCccEEEECcEEEeCCCc--eeeeEEEeCCEEEEeeCCCC---CCCCceEEeCCCCeeecccccccccccCCCCCCCChh
Q 020079           51 SSSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNIN---VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID  125 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~~--~~~~v~i~~g~I~~ig~~~~---~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~  125 (331)
                      |+.+++|+|++|++++..  .+++|+|+||+|++|++...   .+.+.++||++|++|+|||||+|+|+..+  +..+.+
T Consensus         1 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~--~~~~~e   78 (429)
T PRK09059          1 MMRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRE   78 (429)
T ss_pred             CCcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCC--Cchhhh
Confidence            456799999999987653  47899999999999987532   12346899999999999999999999876  456678


Q ss_pred             hHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceeeccccccccCC-ChhhHHHHHHHHHHhCCCeEEE
Q 020079          126 DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKF  202 (331)
Q Consensus       126 ~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~  202 (331)
                      ++....+.++++||||+++|....+. ...+.+....+.... +.+++.++...... ..+.+.++..+. +.|+..++.
T Consensus        79 ~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~~f~~  157 (429)
T PRK09059         79 TIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLR-AAGAVAFTD  157 (429)
T ss_pred             hHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHH-hcCcEEEec
Confidence            88889999999999999999754433 445556655555443 56777766655443 344566776666 667766542


Q ss_pred             EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhc
Q 020079          203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV  282 (331)
Q Consensus       203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~  282 (331)
                         . +....+...+.++++.+++.|.++.+|+|+.+.....   ....|......+...+|...|..++.+.+.++..+
T Consensus       158 ---~-~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~---~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~  230 (429)
T PRK09059        158 ---G-RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNG---VMNEGLFASWLGLSGIPREAEVIPLERDLRLAALT  230 (429)
T ss_pred             ---C-CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCC---CcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence               1 1223356678899999999999999999988754311   01112222233445689999999999999999999


Q ss_pred             CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      |+++|++|+++..+++.++++|++|++|+++|||||+.+.
T Consensus       231 ~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~  270 (429)
T PRK09059        231 RGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLN  270 (429)
T ss_pred             CCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhcc
Confidence            9999999999999999999999999999999999999876

>PRK08044 allantoinase; Provisional

Probab=100.00  E-value=7.2e-32  Score=255.47  Aligned_cols=264  Identities=27%  Similarity=0.374  Sum_probs=213.1

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      +.+++|+|++|++.+....++|+|+||+|++|++...  .+.++||++|++++|||||.|+|+..+  +....+++....
T Consensus         2 ~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~--~~~~~iD~~G~~v~Pg~iD~h~h~~~~--~~~~~e~~~~~~   77 (449)
T PRK08044          2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG--DAKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYETGT   77 (449)
T ss_pred             CceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC--CCCeEEECCCCEEcCCeeccccccCCC--CccccccHHHHH
Confidence            3578999999998766667899999999999987532  246899999999999999999999877  445578899999


Q ss_pred             HHHHhCCceEEecCcC-CCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC
Q 020079          132 AAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG  208 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~  208 (331)
                      +.++++||||+.||.. ..+ ....+.++...+.. ..+.+++.++.+....   ...++.++. +.|+.++|+|+.+.+
T Consensus        78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~-~~gv~~fk~~~~~~~  153 (449)
T PRK08044         78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELD-EVGVVGFKCFVATCG  153 (449)
T ss_pred             HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHH-HcCceEEEEEecccC
Confidence            9999999999999962 222 24556665555544 3467777766555432   356666666 679999999976522


Q ss_pred             C-------CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHh
Q 020079          209 S-------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF  281 (331)
Q Consensus       209 ~-------~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~  281 (331)
                      .       ...++..+.+.++.+++.|.++.+|+|+.+........+...|....+.+...+|...|..++.+.+.++++
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~  233 (449)
T PRK08044        154 DRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV  233 (449)
T ss_pred             cccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence            1       224667888899999999999999999988766544456677877777888889999999999999999999


Q ss_pred             cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      .|+++|++|+++..+++.++++|++|.++++++||||+.+..
T Consensus       234 ~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~  275 (449)
T PRK08044        234 AGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDT  275 (449)
T ss_pred             hCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccH
Confidence            999999999999999999999999999999999999998664

>PRK08417 dihydroorotase; Provisional

Probab=100.00  E-value=5.7e-32  Score=251.74  Aligned_cols=231  Identities=14%  Similarity=0.159  Sum_probs=181.3

Q ss_pred             EEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-
Q 020079           73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-  151 (331)
Q Consensus        73 v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-  151 (331)
                      |+|+||||++|++..   .+.++||++|++|+|||||+|+|+..+  +.. .+++.++.++++++||||++||.+..+. 
T Consensus         1 i~I~dG~I~~i~~~~---~~~~viDa~g~~vlPG~ID~HvH~~~~--~~~-~e~~~t~s~aA~aGGvTtv~dmpnt~P~~   74 (386)
T PRK08417          1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLKND--SLS-SKNLKSLENECLKGGVGSIVLYPDSTPAI   74 (386)
T ss_pred             CEEECCEEEEecCCC---CCCeEEECCCCEEccCeeEEeeeeCCC--CcC-hhhHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence            579999999998753   346899999999999999999999876  433 5899999999999999999999764333 


Q ss_pred             cHHHHHHHHHHHhc---cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC
Q 020079          152 SLTAGFEAYEKKAK---NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG  228 (331)
Q Consensus       152 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g  228 (331)
                      ...+.++...+...   ...+++..   .. ..++..+++..+. +.|+..+|.+.      ..+++.+.++++.+++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~~l~-~~Gv~~~k~~~------~~~~~~l~~~~~~a~~~g  143 (386)
T PRK08417         75 DNEIALELINSAQRELPMQIFPSIR---AL-DEDGKLSNIATLL-KKGAKALELSS------DLDANLLKVIAQYAKMLD  143 (386)
T ss_pred             CCHHHHHHHHHHhhccCCcEEEEEE---EE-CCCccHHHHHHHH-HCCCEEEECCC------CCCHHHHHHHHHHHHHcC
Confidence            33344443333222   22333321   22 2334467777776 68988877531      357889999999999999


Q ss_pred             CcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC
Q 020079          229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP  308 (331)
Q Consensus       229 ~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi  308 (331)
                      +++.+|+|+.+....   .+...|....+.+...+|...|..++.+.+.++..+|+++|++|+|+.++++.++++|++|+
T Consensus       144 ~~V~~HaEd~~~~~~---~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~  220 (386)
T PRK08417        144 VPIFCRCEDSSFDDS---GVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGE  220 (386)
T ss_pred             CEEEEeCCCHHHhhH---HHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC
Confidence            999999999765443   23445655556666778999999999999999999999999999999999999999999999


Q ss_pred             CEEEecCCccccchh
Q 020079          309 NFLNTTIPLCDSCSN  323 (331)
Q Consensus       309 ~v~~~~~p~~~~~~~  323 (331)
                      +|+++|||||+.+..
T Consensus       221 ~vt~ev~ph~L~l~~  235 (386)
T PRK08417        221 KLLKEVSIHHLILDD  235 (386)
T ss_pred             CEEEEechHHHeeCH
Confidence            999999999999874

>PRK02382 dihydroorotase; Provisional

Probab=100.00  E-value=1.1e-30  Score=247.50  Aligned_cols=257  Identities=27%  Similarity=0.398  Sum_probs=195.9

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      |.+++|+|++|++.+...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+  +....+++.+..
T Consensus         1 ~~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~--g~~~~e~~~~~~   78 (443)
T PRK02382          1 MRDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHFREP--GYTHKETWYTGS   78 (443)
T ss_pred             CceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCCCCCeEEECCCCEEcCCEeeeeeeccCC--CCCchhhHHHHH
Confidence            357899999999866667899999999999998654322346899999999999999999999876  556678888999


Q ss_pred             HHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeE-EEEEec-C
Q 020079          132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF-KFFMAY-K  207 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i-k~~~~~-~  207 (331)
                      +.++++||||++++....+. ...+.+....+.. ....+++.++....    ...+++..+. +.|+..+ |+++.. .
T Consensus        79 ~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~-~~gv~~~gkv~~~~~~  153 (443)
T PRK02382         79 RSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLW-ERGVFALGEIFMADST  153 (443)
T ss_pred             HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHH-hcCccceeEEEEEecC
Confidence            99999999999999754433 3444454444433 33556665554322    1234566666 4587777 777643 2


Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079          208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY  287 (331)
Q Consensus       208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~  287 (331)
                      +....+++.+.++++.+++.|+++.+|+|+.+.......  ...|...+..+...+|...|..++.+.+.+++..|+++|
T Consensus       154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~--~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~h  231 (443)
T PRK02382        154 GGMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAK--LLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIH  231 (443)
T ss_pred             CCcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhH--hhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence            234457789999999999999999999998765432211  223555556666678999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++|+++..+++.+++++     |++++||||+.+.
T Consensus       232 i~h~ss~~~~~~i~~~~-----vt~ev~ph~L~l~  261 (443)
T PRK02382        232 IAHISTPEGVDAARREG-----ITCEVTPHHLFLS  261 (443)
T ss_pred             EEECCCHHHHHHHHHCC-----cEEEEchhhhhcC
Confidence            99999999999888764     9999999998765

>PRK09060 dihydroorotase; Validated

Probab=100.00  E-value=2.1e-30  Score=245.28  Aligned_cols=256  Identities=25%  Similarity=0.311  Sum_probs=194.9

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      ..+++|+|++|++++....++|+|+||+|.+|++... +++.++||++|++|+|||||+|+|+..+  +...++++.+..
T Consensus         4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~ID~HvH~~~~--~~~~~e~~~t~~   80 (444)
T PRK09060          4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-ASAGEVIDCRGLHVLPGVIDSQVHFREP--GLEHKEDLETGS   80 (444)
T ss_pred             cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-CCCceEEECCCCEEccCEEeccccccCC--CCCccchHHHHH
Confidence            3578999999999877677999999999999987432 2346899999999999999999999876  556788999999


Q ss_pred             HHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC--
Q 020079          132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK--  207 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~--  207 (331)
                      ++++++||||++||....+. ...+.+....+... ...+++.++......+.   +++.++....|+.++|+|+++.  
T Consensus        81 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~~  157 (444)
T PRK09060         81 RAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSSTG  157 (444)
T ss_pred             HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCCC
Confidence            99999999999999754333 45555555544443 36778777655443332   3444444345888899887542  


Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079          208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY  287 (331)
Q Consensus       208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~  287 (331)
                      .....+...+.++++.   .+.++.+|+|+.+.+... ..+...|  .+..+...+|+..|..++.+.+.+++..|+++|
T Consensus       158 ~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lh  231 (444)
T PRK09060        158 DLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLRVEG--DPSSHPVWRDEEAALLATRRLVRLARETGRRIH  231 (444)
T ss_pred             CcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHHhcC--CcccccccCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence            1223355566666544   489999999998765543 3445666  555666778999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++|+++.++++.++++|+   .|++++||||+.+.
T Consensus       232 i~h~st~~~v~~i~~~~~---~vt~ev~ph~l~l~  263 (444)
T PRK09060        232 VLHVSTAEEIDFLADHKD---VATVEVTPHHLTLA  263 (444)
T ss_pred             EEeCCCHHHHHHHHHhCC---CeEEEeChHHhccC
Confidence            999999999888887765   48999999998765

>PRK09357 pyrC dihydroorotase; Validated

Probab=100.00  E-value=1.1e-30  Score=246.72  Aligned_cols=259  Identities=26%  Similarity=0.312  Sum_probs=194.7

Q ss_pred             cEEEECcEEEeCC-CceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           54 KILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        54 ~~~i~n~~i~~~~-~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      +++|+|++|++++ ...+++|+|+||+|.+|++... +++.++||++|++|+|||||+|+|+..+  +..++++++.+.+
T Consensus         2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~~~~~~iD~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~~~   78 (423)
T PRK09357          2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLHVHLREP--GQEDKETIETGSR   78 (423)
T ss_pred             cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeCCEEecccccCCC--CccccccHHHHHH
Confidence            3799999999874 3568999999999999987522 2346899999999999999999999776  5567899999999


Q ss_pred             HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceeeccccccccC-CChhhHHHHHHHHHHhCCCeEEEEEecCCC
Q 020079          133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS  209 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~  209 (331)
                      .++++||||+.|+....+. +..+.++...+.... ...++..+..... ...+..+++.++. +.|+..+    ..++.
T Consensus        79 ~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~----~~~~~  153 (423)
T PRK09357         79 AAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALK-EAGVVAF----SDDGI  153 (423)
T ss_pred             HHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHH-hCCcEEE----ECCCc
Confidence            9999999999999754332 444555554444432 3344443332221 1223456666665 4565333    34455


Q ss_pred             CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                      +..+++.++++++.|+++|+++++|+++......   .+...|....+.+...+|...|..++.+.+.+++..|+++|++
T Consensus       154 ~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~---~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~  230 (423)
T PRK09357        154 PVQDARLMRRALEYAKALDLLIAQHCEDPSLTEG---GVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHIC  230 (423)
T ss_pred             ccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhc---ccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence            6678899999999999999999999987544321   1223333333444556788999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          290 HVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       290 H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      |+++...++.++.++++|++|++++||||+.+..
T Consensus       231 H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~  264 (423)
T PRK09357        231 HVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTD  264 (423)
T ss_pred             eCCCHHHHHHHHHHHHcCCCEEEEechHHheEcH
Confidence            9999999999999999999999999999988764

>PRK09236 dihydroorotase; Reviewed

Probab=99.98  E-value=6e-30  Score=242.64  Aligned_cols=261  Identities=25%  Similarity=0.299  Sum_probs=196.8

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      .+++|+|++|++++....++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+  +....+++....+
T Consensus         2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~   79 (444)
T PRK09236          2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQVHFREP--GLTHKGDIASESR   79 (444)
T ss_pred             ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCCCCCeEEECCCCEECCCEEEcccccccC--cccccccHHHHHH
Confidence            56899999999976666789999999999998754322356899999999999999999999875  4455678888899


Q ss_pred             HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC-CC
Q 020079          133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GS  209 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~  209 (331)
                      .++++||||++||....+. ...+.+....+.. ....+++.++.+..   .+..+++.++. +.|+.++|+|++.. +.
T Consensus        80 aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~e~~~l~-~~g~~g~k~~~~~~~~~  155 (444)
T PRK09236         80 AAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGAT---NDNLDEIKRLD-PKRVCGVKVFMGASTGN  155 (444)
T ss_pred             HHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccC---cccHHHHHHHH-HccCcEEEEEeccCCCC
Confidence            9999999999999754333 3344454444433 34567777665433   22356666666 56888999987532 11


Q ss_pred             C-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHH-cCCC-CcccccccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079          210 F-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE-LGIT-GPEGHALSRPPLLEGEATTRAIRLAEFVNTPL  286 (331)
Q Consensus       210 ~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~-~G~~-~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~  286 (331)
                      . ..+.+.++++++   ..++++.+|+|+.+.+......+.. .|.. ....|...+|...|..++.+.+.++++.++++
T Consensus       156 ~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~~  232 (444)
T PRK09236        156 MLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTRL  232 (444)
T ss_pred             cccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCCE
Confidence            1 223455555644   4589999999987765543333333 2532 44456667899999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          287 YVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       287 ~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      |++|+++..+++.+++++.+|.+|++++||||+.+.
T Consensus       233 hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~  268 (444)
T PRK09236        233 HVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFD  268 (444)
T ss_pred             EEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcC
Confidence            999999999999999999999999999999999876

>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type

Probab=99.98  E-value=3.9e-30  Score=241.63  Aligned_cols=246  Identities=25%  Similarity=0.298  Sum_probs=190.9

Q ss_pred             eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCC
Q 020079           69 QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP  148 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~  148 (331)
                      ..++|+|+||||++|++.. .+.+.++||++|++|+|||||+|+|+..+  +....+++....+.++++||||++++...
T Consensus         4 ~~~~v~I~~g~I~~i~~~~-~~~~~~~ida~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~~~~~GvTtv~~~~~t   80 (411)
T TIGR00857         4 TEVDILVEGGRIKKIGKLR-IPPDAEVIDAKGLLVLPGFIDLHVHLRDP--GEEYKEDIESGSKAAAHGGFTTVADMPNT   80 (411)
T ss_pred             EEEEEEEECCEEEEeeccC-CCCCCeEEECCCCEEecCEEEcccCCCCC--CCccHhHHHHHHHHHHhCCeEEEEEecCC
Confidence            4678999999999997522 22345799999999999999999999865  44567889889999999999999998654


Q ss_pred             CCC-cHHHHHHHHHHHhc-cceeeccccccccCCC-hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHH
Q 020079          149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK  225 (331)
Q Consensus       149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~  225 (331)
                      .+. ...+.++...+... ...+++.++.+.+... .+.++++.++. ..|+.+ +.+..+. .+..+...+.++++.++
T Consensus        81 ~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~g-~~f~~~~-~~~~~~~~l~~~~~~a~  157 (411)
T TIGR00857        81 KPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELK-EAGAVG-RMFTDDG-SEVQDILSMRRALEYAA  157 (411)
T ss_pred             CCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHH-HCCcEE-EEEEeCC-cccCCHHHHHHHHHHHH
Confidence            332 44555655555443 3567777666655432 22356666666 568776 2222221 22357889999999999


Q ss_pred             HcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHH
Q 020079          226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK  305 (331)
Q Consensus       226 ~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~  305 (331)
                      ++|+++.+|+|+.+.....   +...|...++.+...+|+..|..++.+.+.++...++++|++|+++.++++.++++|+
T Consensus       158 ~~g~~v~iH~E~~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~  234 (411)
T TIGR00857       158 IAGVPIALHAEDPDLIYGG---VMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKS  234 (411)
T ss_pred             HcCCEEEEecCCHHHHhhh---hhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHH
Confidence            9999999999987654422   3445666677778889999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEecCCccccchh
Q 020079          306 AGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       306 ~Gi~v~~~~~p~~~~~~~  323 (331)
                      +|++|+++|||||+.++.
T Consensus       235 ~g~~v~~ev~ph~L~~~~  252 (411)
T TIGR00857       235 QGIKITAEVTPHHLLLSE  252 (411)
T ss_pred             cCCcEEEeechhhheecH
Confidence            999999999999998763

All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.

>PRK07575 dihydroorotase; Provisional

Probab=99.97  E-value=5.6e-29  Score=235.38  Aligned_cols=257  Identities=23%  Similarity=0.305  Sum_probs=188.0

Q ss_pred             CCccEEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079           51 SSSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS  129 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~  129 (331)
                      ||++++|+|++|++++. ...++|+|+||+|.+|++....+...++||++|++|+|||||+|+|+..+  +..++++++.
T Consensus         1 ~~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~~~~~vid~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~   78 (438)
T PRK07575          1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQVHFREP--GLEHKEDLFT   78 (438)
T ss_pred             CcceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEcccEEEeeeccCCC--CCcCcchHHH
Confidence            34578999999998655 46789999999999999754322235899999999999999999998766  5668899999


Q ss_pred             HHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH-HhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079          130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEK-KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK  207 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~  207 (331)
                      +.+.++++||||++||....+. ...+.+....+ ......+++.++.+...   +.+.++..   ..+..++|.|+...
T Consensus        79 ~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~---~~l~~l~~---~~~~~g~~~f~~~~  152 (438)
T PRK07575         79 ASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP---DNLPELLT---ANPTCGIKIFMGSS  152 (438)
T ss_pred             HHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---cCHHHHHH---hhCCeEEEEEEeeC
Confidence            9999999999999999754332 34444444333 33446788777755432   22333332   23667788876421


Q ss_pred             C-CCcC-CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079          208 G-SFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP  285 (331)
Q Consensus       208 ~-~~~~-~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~  285 (331)
                      . .... +...+++.+   ++.+.++..|+|+.+......  ....|...+..+...+|+..|..++.+.+.+++.+|++
T Consensus       153 ~~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~--~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~  227 (438)
T PRK07575        153 HGPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARR--AEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRR  227 (438)
T ss_pred             CCCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhh--HhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCC
Confidence            1 1112 334444433   356999999999876543221  22345556666777789999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          286 LYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       286 ~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      +|++|+|+.++++.++++|  +.+|+++|||||+.+.
T Consensus       228 lhi~HiSt~~~v~~i~~~k--~~~vt~ev~phhL~l~  262 (438)
T PRK07575        228 LHILHLSTAIEAELLRQDK--PSWVTAEVTPQHLLLN  262 (438)
T ss_pred             EEEEECCCHHHHHHHHHhc--CCCEEEEEchhhheeC
Confidence            9999999999999998877  5789999999997655

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

Probab=99.96  E-value=3.1e-28  Score=229.10  Aligned_cols=233  Identities=23%  Similarity=0.267  Sum_probs=172.3

Q ss_pred             cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      +++|+|++|+++.+  ...++|.|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+.  ..  +   ...
T Consensus         1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~iD~H~H~~~~~--~~--~---~~~   72 (415)
T cd01297           1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-TSAREVIDAAGLVVAPGFIDVHTHYDGQV--FW--D---PDL   72 (415)
T ss_pred             CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-CCCCeEEECCCCEEccCEeeeeecCCccc--cc--C---cch
Confidence            37899999999765  467899999999999987543 23468999999999999999999998752  11  1   236


Q ss_pred             HHHHhCCceEEecCcCC---CCCcH------H-----------------HHHHHHHHHh-cc-ceeecc---cccccc--
Q 020079          132 AAALAGGTTMHIDFVIP---INGSL------T-----------------AGFEAYEKKA-KN-SCMDYG---FHMAIT--  178 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~---~~~~~------~-----------------~~~~~~~~~~-~~-~~~~~~---~~~~~~--  178 (331)
                      +.++.+||||++++...   .+...      .                 +.++.+.+.. .. ..+++.   ++....  
T Consensus        73 ~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~  152 (415)
T cd01297          73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRA  152 (415)
T ss_pred             hhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHH
Confidence            67889999999987541   11110      0                 2233333333 22 356655   443332  


Q ss_pred             -------CCChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHH
Q 020079          179 -------KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM  248 (331)
Q Consensus       179 -------~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~  248 (331)
                             ..+++.++++.++++   +.|+.+++.++.+......+++++.++++.|+++|.++.+|+++....       
T Consensus       153 ~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~-------  225 (415)
T cd01297         153 VMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDS-------  225 (415)
T ss_pred             HhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccccc-------
Confidence                   123345666666652   469989987765432235689999999999999999999999875421       


Q ss_pred             HHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHH---------HHHHHHHHHcCCCEEEecCCccc
Q 020079          249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---------MEEIAKARKAGPNFLNTTIPLCD  319 (331)
Q Consensus       249 ~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~---------~~~i~~~~~~Gi~v~~~~~p~~~  319 (331)
                                         |..++++.+.+++..|.++|++|+++...         ++.+++++++|++|++++|||+.
T Consensus       226 -------------------e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~  286 (415)
T cd01297         226 -------------------ILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGA  286 (415)
T ss_pred             -------------------HHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence                               24678888999999999999999998777         89999999999999999999887


Q ss_pred             c
Q 020079          320 S  320 (331)
Q Consensus       320 ~  320 (331)
                      .
T Consensus       287 ~  287 (415)
T cd01297         287 G  287 (415)
T ss_pred             C
Confidence            7

>PRK06687 chlorohydrolase; Validated

Probab=99.95  E-value=8.7e-27  Score=219.92  Aligned_cols=264  Identities=18%  Similarity=0.153  Sum_probs=176.4

Q ss_pred             EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC--CCCceEEeCCCCeeecccccccccccCCCCC--------
Q 020079           55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~--~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~--------  120 (331)
                      .+|+|++|++++.    .++++|+|+||+|++||+....  +...++||++|++|+|||||+|+|+.+....        
T Consensus         2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~   81 (419)
T PRK06687          2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNL   81 (419)
T ss_pred             cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccccccCeEEeCCCCEEccceeeeccCCCccccccccCCCCH
Confidence            5799999999774    3579999999999999985432  2346899999999999999999999876421        


Q ss_pred             -------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChh
Q 020079          121 -------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV  183 (331)
Q Consensus       121 -------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (331)
                                   ..+++..+.    +...++++||||+.|+...........++...+.+.+..+...+.........+
T Consensus        82 ~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~  161 (419)
T PRK06687         82 HEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSETETTAE  161 (419)
T ss_pred             HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCcccHHH
Confidence                         112333333    234458999999999864322234455566666665544333222111122233


Q ss_pred             hHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHc
Q 020079          184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIEL  251 (331)
Q Consensus       184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~  251 (331)
                      ..++..++.++   .+...++.++.++.+++++++.++++++.|+++|+++++|+ |+..+.....        +++.+.
T Consensus       162 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~  241 (419)
T PRK06687        162 TISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEEL  241 (419)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHc
Confidence            34444454432   23455888999999999999999999999999999999996 6655544332        347788


Q ss_pred             CCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC-Cccccchhhh
Q 020079          252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI-PLCDSCSNII  325 (331)
Q Consensus       252 G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~~  325 (331)
                      |++++.....+.....     +++++++++.|+.  ++||+..     .++..+++++++|++|+.+|. +..+...++.
T Consensus       242 g~l~~~~~~~H~~~~~-----~~~~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~  314 (419)
T PRK06687        242 GYLDHPSVFAHGVELN-----EREIERLASSQVA--IAHNPISNLKLASGIAPIIQLQKAGVAVGIATDSVASNNNLDMF  314 (419)
T ss_pred             CCCCCCeEEEEEecCC-----HHHHHHHHHcCCe--EEECcHHhhhhccCCCcHHHHHHCCCeEEEeCCCCCCCCChhHH
Confidence            8888754333322111     2346777777765  6676642     345678999999999998876 3334433333

>PRK09061 D-glutamate deacylase; Validated

Probab=99.95  E-value=2.1e-26  Score=220.84  Aligned_cols=232  Identities=19%  Similarity=0.206  Sum_probs=168.3

Q ss_pred             ccEEEECcEEEeCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079           53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG  130 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~--~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~  130 (331)
                      .+++|+|++|++++..  ..++|.|+||+|++|++...  .+.++||++|++|+|||||+|+|...+  +         .
T Consensus        19 ~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~--~---------~   85 (509)
T PRK09061         19 YDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI--EGDRTIDATGLVVAPGFIDLHAHGQSV--A---------A   85 (509)
T ss_pred             CCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC--CCCeEEeCCCCEEecCeEeeeeCCCCC--c---------c
Confidence            5689999999997653  45799999999999997532  346899999999999999999998654  1         1


Q ss_pred             HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-------C------------------------
Q 020079          131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-------K------------------------  179 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------------------------  179 (331)
                      .+.++.+||||++++.. ......+.++...+..  ..+++.++.+..       .                        
T Consensus        86 ~~~~~~~GvTtvv~~~~-~~~p~~~~~~~~~~~~--~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (509)
T PRK09061         86 YRMQAFDGVTTALELEA-GVLPVARWYAEQAGEG--RPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERA  162 (509)
T ss_pred             chhhccCCceeEEeecc-CCCCHHHHHHHHHhcC--CcceeehhcCcHHHHHHHhCCcccccccccccccccccccccCC
Confidence            45568899999999731 1112222232222211  224443322221       0                        


Q ss_pred             CChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCc
Q 020079          180 WDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP  256 (331)
Q Consensus       180 ~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~  256 (331)
                      .+.+.++++.++.+   +.|+.+++.+..+.  +..+.+++.++++.|+++|.++.+|+++.....              
T Consensus       163 ~t~~el~~m~~ll~~al~~Ga~gis~~~~y~--p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~--------------  226 (509)
T PRK09061        163 ATPAELAEILELLEQGLDEGALGIGIGAGYA--PGTGHKEYLELARLAARAGVPTYTHVRYLSNVD--------------  226 (509)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEecCCccC--CCCCHHHHHHHHHHHHHcCCEEEEEecCcccCC--------------
Confidence            11344556666653   47999988654432  245889999999999999999999997654310              


Q ss_pred             ccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHHHcCCCEEEecCCccccchhh
Q 020079          257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGPNFLNTTIPLCDSCSNI  324 (331)
Q Consensus       257 ~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~  324 (331)
                              ...|..++++.+.+++..|.++|++|+++      ...++.++++|++|++|++++|||+..++.+
T Consensus       227 --------~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~  292 (509)
T PRK09061        227 --------PRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYGAGSTVV  292 (509)
T ss_pred             --------chhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcchhhhhh
Confidence                    12345678999999999999999999998      7888999999999999999999999665554

>PRK04250 dihydroorotase; Provisional

Probab=99.95  E-value=2.5e-26  Score=214.02  Aligned_cols=230  Identities=22%  Similarity=0.249  Sum_probs=166.5

Q ss_pred             CcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCC
Q 020079           59 GGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG  138 (331)
Q Consensus        59 n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~G  138 (331)
                      ++++++.....+++|+|+||+|++|++..  .++.++||++|++|+|||||+|+|+..+  +....+++.+..+.++++|
T Consensus         3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~~--~~~~~~iD~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~aa~~gG   78 (398)
T PRK04250          3 EGKFLLKGRIVEGGIGIENGRISKISLRD--LKGKEVIKVKGGIILPGLIDVHVHLRDF--EESYKETIESGTKAALHGG   78 (398)
T ss_pred             eEEEEECCcEEEEEEEEECCEEEEeeCCC--CCCCeEEECCCCEEccCEEeccccccCC--CCCcHHHHHHHHHHHHhCC
Confidence            46777766666899999999999997411  1245899999999999999999999665  5567889999999999999


Q ss_pred             ceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHH
Q 020079          139 TTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL  216 (331)
Q Consensus       139 vTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~  216 (331)
                      |||++||.+..+. ...+.+....+... .+.+++.++. ....   ...++.++. .   ..+|.|+.+... ....+.
T Consensus        79 vTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~~l~~l~-~---~~~k~f~~~~~~-~~~~~~  149 (398)
T PRK04250         79 ITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG---NCEKAEEIK-A---DFYKIFMGASTG-GIFSEN  149 (398)
T ss_pred             eEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC---CHHHHHHHH-h---hheEEEEecCCC-chhHHH
Confidence            9999999754433 45555655555543 4678888776 3322   223344443 1   246777644211 112222


Q ss_pred             HHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHH
Q 020079          217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA  296 (331)
Q Consensus       217 l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~  296 (331)
                      +...  . .+.+..+.+|+|+.+...         +       ...+|...|..++.+.+.++...|+++|++|+|+.++
T Consensus       150 ~~~~--~-~~~~~~v~~H~E~~~~~~---------~-------~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~  210 (398)
T PRK04250        150 FEVD--Y-ACAPGIVSVHAEDPELIR---------E-------FPERPPEAEVVAIERALEAGKKLKKPLHICHISTKDG  210 (398)
T ss_pred             HHHH--H-HhcCCeEEEEecChhhhh---------c-------ccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence            2221  2 233567999999876532         1       1247899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC-EEEecCCccccchh
Q 020079          297 MEEIAKARKAGPN-FLNTTIPLCDSCSN  323 (331)
Q Consensus       297 ~~~i~~~~~~Gi~-v~~~~~p~~~~~~~  323 (331)
                      ++.++   ++|++ |+++|||||+.++.
T Consensus       211 ~~~i~---~~g~~~vt~Ev~ph~L~l~~  235 (398)
T PRK04250        211 LKLIL---KSNLPWVSFEVTPHHLFLTR  235 (398)
T ss_pred             HHHHH---HcCCCcEEEEeCHHHhccCH
Confidence            88875   35997 99999999998764

>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional

Probab=99.95  E-value=1.7e-26  Score=218.32  Aligned_cols=269  Identities=17%  Similarity=0.163  Sum_probs=178.8

Q ss_pred             cEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCC--CCCCceEEeCCCCeeecccccccccccCCCCC-------
Q 020079           54 KILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------  120 (331)
Q Consensus        54 ~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~--~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-------  120 (331)
                      +++|+|++|++++.    .++++|+|+||+|++||+...  ..++.++||++|++|||||||+|+|+.+.+..       
T Consensus         2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~   81 (435)
T PRK15493          2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDML   81 (435)
T ss_pred             eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccccCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCC
Confidence            47999999998663    368899999999999998532  22356899999999999999999999764211       


Q ss_pred             --------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-cccCCC
Q 020079          121 --------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWD  181 (331)
Q Consensus       121 --------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  181 (331)
                                    ..++++.+.    +..+++++||||+.|+............+...+.+.|..+...... +.....
T Consensus        82 l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~  161 (435)
T PRK15493         82 LQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDE  161 (435)
T ss_pred             HHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCCCccH
Confidence                          112333322    3345689999999998643322223445556666666544322111 111112


Q ss_pred             hhhHHHHHHHHHHh-C-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHH
Q 020079          182 EVVSDEMEVMVKEK-G-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIE  250 (331)
Q Consensus       182 ~~~~~~~~~~~~~~-g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~  250 (331)
                      .+..++..++.++. + ...++..+.++.+++++++.++++++.|+++|+++++|+ |+..+.....        +++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~  241 (435)
T PRK15493        162 KKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAAS  241 (435)
T ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            23334444444332 2 345888899999999999999999999999999999996 7766655443        45778


Q ss_pred             cCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecC-Cccccchhh
Q 020079          251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTI-PLCDSCSNI  324 (331)
Q Consensus       251 ~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~  324 (331)
                      .|++++.....+.....     ++.++++++.|+.  ++||+.     ..++..++++.++|++|+.+|. +..+...++
T Consensus       242 ~Gll~~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~  314 (435)
T PRK15493        242 CGLFKRPTVIAHGVVLN-----DNERAFLAEHDVR--VAHNPNSNLKLGSGIANVKAMLEAGIKVGIATDSVASNNNLDM  314 (435)
T ss_pred             cCCCCCCcEEEEeecCC-----HHHHHHHHHcCCe--EEEChHHHHHHhcCcccHHHHHHCCCeEEEccCccccCCCcCH
Confidence            89888765444433222     2345677777775  666654     2345678999999999998875 334444455


Q ss_pred             hhhhc
Q 020079          325 IRMVE  329 (331)
Q Consensus       325 ~~~~~  329 (331)
                      .+.|.
T Consensus       315 ~~~~~  319 (435)
T PRK15493        315 FEEMR  319 (435)
T ss_pred             HHHHH
Confidence            44443

>PRK01211 dihydroorotase; Provisional

Probab=99.95  E-value=1.7e-26  Score=215.13  Aligned_cols=233  Identities=20%  Similarity=0.262  Sum_probs=168.0

Q ss_pred             EECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHh
Q 020079           57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALA  136 (331)
Q Consensus        57 i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~  136 (331)
                      |.|.- +..+....++|+|+||+|++|++...   +.++||++| +|+|||||+|+|+..+  +...+|+++++.+++++
T Consensus         3 ~~~~~-~~~~~~~~~di~I~dGkI~~i~~~~~---~~~~ida~g-~vlPG~ID~HvH~r~p--g~~~ked~~s~s~AAaa   75 (409)
T PRK01211          3 ICGNF-YYKGKFDYLEIEVEDGKIKSIKKDAG---NIGKKELKG-AILPAATDIHVHFRTP--GETEKEDFSTGTLSAIF   75 (409)
T ss_pred             eecee-EEcCcEEEEEEEEECCEEEEecCCCC---CceEEEecc-EEcCCeEEeeeccCCC--CCcccCcHHHHHHHHHc
Confidence            44433 33344567899999999999987542   357999999 9999999999999998  77889999999999999


Q ss_pred             CCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCH
Q 020079          137 GGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND  214 (331)
Q Consensus       137 ~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~  214 (331)
                      +||||++||.+..+. ...+.+....+... .+.+++.++......+.    +   +. +.|+.++|+|+++... ....
T Consensus        76 GGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~----~---~~-~~g~~~~k~f~~~~~~-~~~~  146 (409)
T PRK01211         76 GGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----L---IL-DERSIGLKVYMGGTTN-TNGT  146 (409)
T ss_pred             CCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh----h---HH-hccCcEEEEEcCCCcC-CCcc
Confidence            999999999764333 55666666555543 36788887765532221    1   22 3488899988753110 0000


Q ss_pred             HHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079          215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM  294 (331)
Q Consensus       215 ~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~  294 (331)
                      ......++.+++.|.++.+|+|+.+......   ...+  ....+...+|...|..++.+.+.++.+   ++|++|+++.
T Consensus       147 ~~~~~~l~~~~~~g~~v~~H~E~~~l~~~~~---~~~~--~~~~~~~~rP~~aE~~ai~~~~~la~~---~~hi~HvSt~  218 (409)
T PRK01211        147 DIEGGEIKKINEANIPVFFHAELSECLRKHQ---FESK--NLRDHDLARPIECEIKAVKYVKNLDLK---TKIIAHVSSI  218 (409)
T ss_pred             ccCHHHHHHHHccCCEEEEeccChHHhhhhh---hCcc--hHhhCCCCCCHHHHHHHHHHHHHHhCC---CcEEEEecCh
Confidence            1122344666789999999999877654321   1111  112345568999999999999999886   6999999998


Q ss_pred             HHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          295 DAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       295 ~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +++         + +|+++|||||+.+..
T Consensus       219 ~~~---------~-~vt~Ev~phhL~l~~  237 (409)
T PRK01211        219 DVI---------G-RFLREVTPHHLLLND  237 (409)
T ss_pred             hhc---------C-ceEEEecHHHHcccc
Confidence            775         2 899999999999874

>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=99.94  E-value=4.1e-25  Score=205.33  Aligned_cols=221  Identities=25%  Similarity=0.227  Sum_probs=171.0

Q ss_pred             ceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceee
Q 020079           93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMD  170 (331)
Q Consensus        93 ~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~  170 (331)
                      .++||++|++|+||+||+|+|+..+  +....+++.++.++++.+||||++||....+. ...+.+...++.... ...+
T Consensus         2 ~~~iD~~g~~vlPG~iD~HvH~~~~--~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~   79 (374)
T cd01317           2 AEVIDAEGKILAPGLVDLHVHLREP--GFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVR   79 (374)
T ss_pred             CeEEECCCCEEecCEEeeccccCCC--CccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCcee
Confidence            4789999999999999999999887  55668899999999999999999999765433 455566665555443 4555


Q ss_pred             ccccccccCCC-hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHH
Q 020079          171 YGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI  249 (331)
Q Consensus       171 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~  249 (331)
                      +.++.+..... .+.++++..+. ..|+..+|.+    .....+...+.++++.+++.|.++.+|+|+.+....   ...
T Consensus        80 ~~~~~~~~~~~~~~~~~~i~~l~-~~G~~~~k~~----~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~---~~~  151 (374)
T cd01317          80 VLPIGALTKGLKGEELTEIGELL-EAGAVGFSDD----GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGG---GVM  151 (374)
T ss_pred             EEEEEEEeeCCCcccHHHHHHHH-HCCcEEEEcC----CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhc---cCc
Confidence            55555544332 22466777776 6788888742    122357888999999999999999999998765431   122


Q ss_pred             HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      ..|......+...+|...|..++.+.+.+++++++++|++|+++..+++.++++++.|+.+++++||||+.+..
T Consensus       152 ~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~  225 (374)
T cd01317         152 NEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDD  225 (374)
T ss_pred             cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCH
Confidence            33433444555568888888899999999999999999999999999999999999999999999999986543

This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.

>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA

Probab=99.93  E-value=3.6e-24  Score=202.93  Aligned_cols=255  Identities=24%  Similarity=0.272  Sum_probs=172.5

Q ss_pred             EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-C------
Q 020079           55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~------  120 (331)
                      ++|+|++|++.+.    ..+++|+|+||+|++||+....   .++.++||++|++|+|||||+|+|+.+... +      
T Consensus         1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~   80 (441)
T TIGR03314         1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP   80 (441)
T ss_pred             CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence            3789999997542    3578999999999999985321   134578999999999999999999976421 1      


Q ss_pred             ------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCC---CcHHHHHHHHHHHhccceeeccccc
Q 020079          121 ------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN---GSLTAGFEAYEKKAKNSCMDYGFHM  175 (331)
Q Consensus       121 ------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  175 (331)
                                        ..++++.+.+    ..+++++||||+.|+.....   .......++..+.+.|..+.+.+..
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~  160 (441)
T TIGR03314        81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD  160 (441)
T ss_pred             CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence                              0122333322    23468999999999864322   1233445666666666555433321


Q ss_pred             ccc-CCChhhHHHHHHHHHH-hC--CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH-----
Q 020079          176 AIT-KWDEVVSDEMEVMVKE-KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ-----  245 (331)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~-~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~-----  245 (331)
                      ... ....+.+++..++.++ .+  ...++..++++++++++++.++++.+.|+++|+++++|+ |+..+.....     
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~  240 (441)
T TIGR03314       161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGK  240 (441)
T ss_pred             CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCC
Confidence            110 1112223333334322 22  235778889999999999999999999999999999996 8777766543     


Q ss_pred             ---HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCC
Q 020079          246 ---KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       246 ---~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p  316 (331)
                         +++.+.|++++.....+.....     +++++++.+.|+.  ++||+..     .++..+++++++|++|+.+|.-
T Consensus       241 ~~~~~l~~~G~l~~~~~~~H~~~~~-----~~d~~~la~~g~~--v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LGtD~  312 (441)
T TIGR03314       241 DIVERLADFGLLGSKTLAAHCIYLS-----DREIELLNETDTF--VVHNPESNMGNAVGYNPVLRMFKNGILLGLGTDG  312 (441)
T ss_pred             CHHHHHHHCCCCCCCeEEEEEecCC-----HHHHHHHHHcCCc--EEECHHHHhhhccCCCCHHHHHHCCCEEEEcCCC
Confidence               5688999999876444433222     2356778888875  6666632     3567899999999999988864

Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.

>PRK00369 pyrC dihydroorotase; Provisional

Probab=99.93  E-value=5.4e-24  Score=197.38  Aligned_cols=211  Identities=20%  Similarity=0.170  Sum_probs=152.7

Q ss_pred             eeeeEEEeCCEEEEeeCCCCCCCCceEEeC-CCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcC
Q 020079           69 QIADVYVEDGIVVAVQPNINVGDDVKVLDA-TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI  147 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~~~~~~~~id~-~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~  147 (331)
                      .+..|.+++|+|..|++..  +.+.++||+ +|++|+|||||+|+|+..+  |...+|+++++.++++++||||++||.+
T Consensus        12 ~~~~~~~~~~~~~~i~~~~--~~~~~~id~~~G~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~~mPn   87 (392)
T PRK00369         12 GKEIKEICINFDRRIKEIK--SRCKPDLDLPQGTLILPGAIDLHVHLRGL--KLSYKEDVASGTSEAAYGGVTLVADMPN   87 (392)
T ss_pred             CCceEEEeeeeeeeEeecc--CCCCceeecCCCCEEeCCEEEcccccCCC--CCcccccHHHHHHHHHhCCcEEEEECCC
Confidence            3567788999999998752  336789999 6999999999999999998  7788999999999999999999999976


Q ss_pred             CCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHH
Q 020079          148 PING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK  225 (331)
Q Consensus       148 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~  225 (331)
                      ..+. ...+.++...+... .+.+++.++......    .+++   . ..|+.++|.|.+.    ..+.+    +++.+.
T Consensus        88 t~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el---~-~~~~~g~k~f~~~----~~~~~----~~~~~~  151 (392)
T PRK00369         88 TIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKV---D-KLPIAGYKIFPED----LEREE----TFRVLL  151 (392)
T ss_pred             CCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHH---H-HhhCceEEEECCC----CchHH----HHHHHH
Confidence            5443 55666666655553 467888877654321    1233   2 3467788887421    11223    344445


Q ss_pred             HcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHH
Q 020079          226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK  305 (331)
Q Consensus       226 ~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~  305 (331)
                      +++.++.+|+|+.+.....              ....+|...|..++.+...+     .++|++|+|+.++   ++++|+
T Consensus       152 ~~~~~v~~HaE~~~l~~~~--------------~~~~rp~~aE~~ai~~~~~~-----~~lhi~HvSt~~~---v~~ak~  209 (392)
T PRK00369        152 KSRKLKILHPEVPLALKSN--------------RKLRRNCWYEIAALYYVKDY-----QNVHITHASNPRT---VRLAKE  209 (392)
T ss_pred             HhCCEEEEeCCCHHHhhcc--------------hhcccCHHHHHHHHHHHHHh-----CCEEEEECCCHHH---HHHHHH
Confidence            5669999999987654311              11236667777665555444     8999999999876   456788


Q ss_pred             cCCCEEEecCCccccchh
Q 020079          306 AGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       306 ~Gi~v~~~~~p~~~~~~~  323 (331)
                      +|  |+++|||||+.+..
T Consensus       210 ~g--vt~Ev~pHhL~l~~  225 (392)
T PRK00369        210 LG--FTVDITPHHLLVNG  225 (392)
T ss_pred             CC--CeEEechhHheecc
Confidence            87  88999999999864

>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=99.93  E-value=4.3e-24  Score=196.82  Aligned_cols=204  Identities=27%  Similarity=0.358  Sum_probs=158.5

Q ss_pred             CCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccc
Q 020079          100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI  177 (331)
Q Consensus       100 g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~  177 (331)
                      |++|+||+||+|+|+..+  +...+|++.++.++++++||||++||.+..+. ...+.++...+.. ..+.+++.++...
T Consensus         1 G~~vlPG~iD~HvH~r~p--g~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~   78 (361)
T cd01318           1 GLLILPGVIDIHVHFREP--GLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV   78 (361)
T ss_pred             CCEEecCeeEeeecCCCC--CCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence            789999999999999987  77789999999999999999999999765433 4556666555554 3467888877664


Q ss_pred             cCCChhhHHHHHHHHHHhCCCeEEEEEecCC-CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCc
Q 020079          178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP  256 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~-~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~  256 (331)
                      ...     +++.++. +.|+.++|.|+.+.. ....+...+.++++.++   .++.+|+|+.+............+    
T Consensus        79 ~~~-----~~l~~~~-~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~----  145 (361)
T cd01318          79 TGS-----EDLEELD-KAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGES----  145 (361)
T ss_pred             cCh-----hhHHHHH-HhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhcc----
Confidence            332     3455555 567888998875321 12257788888888774   789999999876554433332222    


Q ss_pred             ccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       257 ~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                       .+...+|...|..++.+.+.+++..|.++|++|+++.++++.++++|   .+|++++||||+.+.
T Consensus       146 -~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~~k---~~vt~ev~ph~L~l~  207 (361)
T cd01318         146 -AHPRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLD  207 (361)
T ss_pred             -CCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHhC---CCeEEEeCHHHhhcC
Confidence             45566899999999999999999999999999999999999999888   689999999998665

This group contains the archeal members of the DHOase family.

>PRK07203 putative chlorohydrolase/aminohydrolase; Validated

Probab=99.93  E-value=1.2e-23  Score=199.88  Aligned_cols=256  Identities=22%  Similarity=0.240  Sum_probs=169.9

Q ss_pred             EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-C------
Q 020079           55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~------  120 (331)
                      ++|+|++|++.+.    .++++|+|+||+|++||+....   .++.++||++|++|+|||||+|+|+.+.+. +      
T Consensus         2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~   81 (442)
T PRK07203          2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP   81 (442)
T ss_pred             EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence            6899999998543    2478999999999999964221   134589999999999999999999875421 1      


Q ss_pred             ------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCC--C-cHHHHHHHHHHHhccceeeccccc
Q 020079          121 ------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN--G-SLTAGFEAYEKKAKNSCMDYGFHM  175 (331)
Q Consensus       121 ------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~  175 (331)
                                        ..++++++..    ...++++||||++|+.....  . ......+...+.+.+..+.+....
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d  161 (442)
T PRK07203         82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSD  161 (442)
T ss_pred             CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccccc
Confidence                              1123333322    24568899999999853221  1 222334445555555433322211


Q ss_pred             cc-cCCChhhHHHHHHHHHHh-C--CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH-----
Q 020079          176 AI-TKWDEVVSDEMEVMVKEK-G--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ-----  245 (331)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~~-g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~-----  245 (331)
                      .. .....+.+++..++++.. +  ...+..++++++++.++++.++++.+.|+++|+++++|+ |+..+.....     
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~  241 (442)
T PRK07203        162 RDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGK  241 (442)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCC
Confidence            10 011122233333433221 1  225777888999999999999999999999999999996 7777766544     


Q ss_pred             ---HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCCc
Q 020079          246 ---KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIPL  317 (331)
Q Consensus       246 ---~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p~  317 (331)
                         +++.+.|++++.....+.....     +++++++++.|+.  ++||+..     .++..+++++++|++|+.+|.-+
T Consensus       242 ~~v~~l~~~Gll~~~~~~~H~~~~~-----~~d~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~  314 (442)
T PRK07203        242 DIVERLADFGLLGEKTLAAHCIYLS-----DEEIDLLKETDTF--VVHNPESNMGNAVGYNPVLEMIKNGILLGLGTDGY  314 (442)
T ss_pred             CHHHHHHhCCCCCCCcEEEEeecCC-----HHHHHHHHhcCCe--EEECchhhhhcccCCCCHHHHHHCCCeEEEcCCCC
Confidence               4588999988875444433222     2456777787875  6777643     34678999999999999988743

>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases

Probab=99.92  E-value=1.1e-23  Score=198.40  Aligned_cols=253  Identities=30%  Similarity=0.340  Sum_probs=157.2

Q ss_pred             EEEECcEEEeCC---CceeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCC-C--------
Q 020079           55 ILIKGGTVVNAH---HQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~---~~~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~--------  120 (331)
                      ++|+|++|++++   ..++++|+|+||||++|++....+  ++.++||++|++|+|||||+|+|+.++.. +        
T Consensus         1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~   80 (411)
T cd01298           1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLM   80 (411)
T ss_pred             CeEEeeEEEEeCCcceeecceEEEECCEEEEecCccccccCCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHH
Confidence            379999999975   357899999999999999865432  45789999999999999999999975321 1        


Q ss_pred             ------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc---CCC
Q 020079          121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT---KWD  181 (331)
Q Consensus       121 ------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  181 (331)
                                  ..++++++.    .+..++++||||++|+.....   ....+...+.+.+..+...+.....   ...
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~  157 (411)
T cd01298          81 EWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP---DAVAEAAEELGIRAVLGRGIMDLGTEDVEET  157 (411)
T ss_pred             HHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch---HHHHHHHHHhCCeEEEEcceecCCCcccccH
Confidence                        122344433    334467899999999865432   2333334444444333222211100   111


Q ss_pred             hhhHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHH
Q 020079          182 EVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMI  249 (331)
Q Consensus       182 ~~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~  249 (331)
                      .+..+++.++.++   .|.+.+|++++++.+..++++.++++++.|+++|+++.+|+ ++....+...        +++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~  237 (411)
T cd01298         158 EEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLE  237 (411)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHH
Confidence            2334444444422   24677899888887777899999999999999999999996 6654443222        2234


Q ss_pred             HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH---HHHHHHHHHHHcCCCEEEecC
Q 020079          250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~---~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.|..+.+....+.....     ++.++++++.|+.+..+..++.   .....++++.++|+++++++.
T Consensus       238 ~~~~~~~~~~i~H~~~l~-----~~~~~~l~~~gi~~~~~p~~~~~~~~~~~~~~~~~~~Gv~~~~GsD  301 (411)
T cd01298         238 ELGLLGPDVVLAHCVWLT-----DEEIELLAETGTGVAHNPASNMKLASGIAPVPEMLEAGVNVGLGTD  301 (411)
T ss_pred             HcCCCCCCeEEEEecCCC-----HHHHHHHHHcCCeEEEChHHhhhhhhCCCCHHHHHHCCCcEEEeCC
Confidence            455554432111111111     1235566666765443332211   123467888889999887654

Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.

>PRK06380 metal-dependent hydrolase; Provisional

Probab=99.92  E-value=2.6e-23  Score=196.27  Aligned_cols=262  Identities=19%  Similarity=0.229  Sum_probs=168.2

Q ss_pred             cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC----------
Q 020079           54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG----------  120 (331)
Q Consensus        54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~----------  120 (331)
                      +++|+|++|++.+.   ..+++|+|+||+|++||+...  ...++||++|++|+|||||+|+|+.+....          
T Consensus         2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~   79 (418)
T PRK06380          2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEE   79 (418)
T ss_pred             eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHH
Confidence            37899999998753   458899999999999998543  245899999999999999999999875321          


Q ss_pred             ----------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccc-ccCCChhhH
Q 020079          121 ----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDEVVS  185 (331)
Q Consensus       121 ----------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  185 (331)
                                ..++++++.    +...++++||||+.|+...    .....+...+.+.+..+.+..... .........
T Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~  155 (418)
T PRK06380         80 FLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS----EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPL  155 (418)
T ss_pred             HHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC----hHHHHHHHHHhCCeEEEecccccCCcccccchHH
Confidence                      123333332    3345689999999998632    223344555556554443322111 000111122


Q ss_pred             HHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcCCCC
Q 020079          186 DEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELGITG  255 (331)
Q Consensus       186 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G~~~  255 (331)
                      ++..++.++ .+...++..+++++.+.++++.++++++.|+++|+++++|+ |+..+.....        +++.+.|.++
T Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~  235 (418)
T PRK06380        156 NNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLN  235 (418)
T ss_pred             HHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCC
Confidence            233333322 22345677778888889999999999999999999999997 5544443222        4567777777


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----H-HHHHHHHHHHcCCCEEEecCC-ccccchhhhhhh
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----D-AMEEIAKARKAGPNFLNTTIP-LCDSCSNIIRMV  328 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~-~~~~i~~~~~~Gi~v~~~~~p-~~~~~~~~~~~~  328 (331)
                      ++....+.....     .+.++++.+.|+.  ++||+..     . ....+++++++|++|+.++.- ..+...++...|
T Consensus       236 ~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~l~~~g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~  308 (418)
T PRK06380        236 SKLIAAHCVWAT-----YHEIKLLSKNGVK--VSWNSVSNFKLGTGGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAM  308 (418)
T ss_pred             CCeEEEEeecCC-----HHHHHHHHHcCCE--EEECHHHHHhhccCCCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHHHH
Confidence            664333322221     1346677777765  5665532     1 356789999999999988863 233334443333

>PRK07228 N-ethylammeline chlorohydrolase; Provisional

Probab=99.92  E-value=2.3e-23  Score=198.25  Aligned_cols=253  Identities=22%  Similarity=0.246  Sum_probs=163.0

Q ss_pred             cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CC--------
Q 020079           54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------  121 (331)
Q Consensus        54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~--------  121 (331)
                      +++|+|++|+++++   .++++|+|+||+|++|++....++..++||++|++|+|||||+|+|+.+++. +.        
T Consensus         2 ~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~   81 (445)
T PRK07228          2 TILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLD   81 (445)
T ss_pred             eEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccCcCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHH
Confidence            48999999999763   5789999999999999986543335789999999999999999999987532 11        


Q ss_pred             ------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-------ccc
Q 020079          122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-------AIT  178 (331)
Q Consensus       122 ------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  178 (331)
                                  .++++.+    .+...++++||||++|+.....  ....++...+.+.+......+..       ...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~--~~~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~  159 (445)
T PRK07228         82 WLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHH--TDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ  159 (445)
T ss_pred             HHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccC--hHHHHHHHHHcCCeEEEecceecCCcCCCcccc
Confidence                        1122222    2234567899999999864321  23344555555544322211110       011


Q ss_pred             CCChhhHHHHHHHHHHh-CCC--eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------H
Q 020079          179 KWDEVVSDEMEVMVKEK-GIN--SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------K  246 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~-g~~--~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~  246 (331)
                      ....+.+++..++++.. |..  .+...+.++....++++.++++++.|+++|+++++|+ |+..+.+...        +
T Consensus       160 ~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~  239 (445)
T PRK07228        160 EDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIH  239 (445)
T ss_pred             ccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHH
Confidence            11223344555555332 432  3444456666677899999999999999999999997 6665554332        3


Q ss_pred             HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       247 ~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ++.+.|+++++....+.....     ++.++++++.|+.  ++||+..     .....++++.+.|++++.++.
T Consensus       240 ~l~~~g~~~~~~~l~H~~~~~-----~~~~~~~~~~g~~--v~~~P~~~~~~~~~~~p~~~~~~~Gv~v~lGtD  306 (445)
T PRK07228        240 YLDEVGLTGEDLILAHCVWLD-----EEEREILAETGTH--VTHCPSSNLKLASGIAPVPDLLERGINVALGAD  306 (445)
T ss_pred             HHHHCCCCCCCcEEEEEecCC-----HHHHHHHHHcCCe--EEEChHHhhhcccccCcHHHHHHCCCeEEEcCC
Confidence            456677777654443322111     2235666777765  5566542     345678999999999988764

>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed

Probab=99.92  E-value=2e-23  Score=198.84  Aligned_cols=254  Identities=19%  Similarity=0.152  Sum_probs=167.6

Q ss_pred             EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCC-C-------
Q 020079           55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-S-------  121 (331)
Q Consensus        55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~-------  121 (331)
                      +++.|+.|+++++    ..+++|+|+||+|++|++..+.+ ++.++||+.|++|||||||+|+|+.+.+.. .       
T Consensus         4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~   83 (451)
T PRK08203          4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAE   83 (451)
T ss_pred             EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCCCCCeEEeCCCCEEecceEeccccccchhcccccccCCCc
Confidence            4556678998774    46889999999999999965432 356899999999999999999999875221 1       


Q ss_pred             --------------CChhhHH----HHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccceeecccc-----
Q 020079          122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFH-----  174 (331)
Q Consensus       122 --------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----  174 (331)
                                    .++++.+    .+...++++||||++|+....+.    .....++...+.+.|..+.....     
T Consensus        84 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~  163 (451)
T PRK08203         84 LFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGES  163 (451)
T ss_pred             HHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEecceeecCCc
Confidence                          1122322    23345688999999998633221    24455666667766644322110     


Q ss_pred             -c--cc---cCCChhhHHHHHHHHHHh-C---CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHH
Q 020079          175 -M--AI---TKWDEVVSDEMEVMVKEK-G---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE  243 (331)
Q Consensus       175 -~--~~---~~~~~~~~~~~~~~~~~~-g---~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~  243 (331)
                       .  ..   ....++.++..+++.++. +   ...++..++++.++.++++.++++++.|+++|+++++|+ |...+...
T Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~  243 (451)
T PRK08203        164 DGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAF  243 (451)
T ss_pred             cCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence             0  00   011223445555555331 1   146788888888888999999999999999999999996 66655444


Q ss_pred             HH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCE
Q 020079          244 GQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNF  310 (331)
Q Consensus       244 ~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v  310 (331)
                      ..        +++.+.|+++++....+.....     ++.++++++.|+.  ++||+..     .....++.++++|++|
T Consensus       244 ~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~-----~~~~~~la~~g~~--v~~~P~~~~~l~~~~~~~~~~~~~Gv~v  316 (451)
T PRK08203        244 CLERFGMRPVDYLEDLGWLGPDVWLAHCVHLD-----DAEIARLARTGTG--VAHCPCSNMRLASGIAPVRELRAAGVPV  316 (451)
T ss_pred             HHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCC-----HHHHHHHHhcCCe--EEECcHHhhhhccCCCCHHHHHHCCCeE
Confidence            33        4567888888765333322111     2246677777776  5566542     2345688999999999


Q ss_pred             EEecC
Q 020079          311 LNTTI  315 (331)
Q Consensus       311 ~~~~~  315 (331)
                      +.++.
T Consensus       317 ~lGtD  321 (451)
T PRK08203        317 GLGVD  321 (451)
T ss_pred             EEecC
Confidence            98775

>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids

Probab=99.92  E-value=8.7e-24  Score=193.47  Aligned_cols=180  Identities=36%  Similarity=0.405  Sum_probs=145.0

Q ss_pred             CeeecccccccccccCCCCCCC-ChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccc
Q 020079          101 KFVMPGGIDPHTHLAMEFMGSE-TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI  177 (331)
Q Consensus       101 ~~v~PG~ID~H~H~~~~~~~~~-~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~  177 (331)
                      ++|+||+||+|+|+..+  +.. .++++.++.++++++||||++||.+..+. ...+.++...+.. ..+.+++.++...
T Consensus         1 ~~vlPG~iD~HvH~r~p--g~~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~   78 (337)
T cd01302           1 LLVLPGFIDIHVHLRDP--GGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGI   78 (337)
T ss_pred             CEecCCeeEeeeccCCC--CCCCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEec
Confidence            57999999999999987  555 78999999999999999999999765443 3455555544443 3467888877665


Q ss_pred             cCCChhhHHHHHHHHHHhCCCeEEEEEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      ...  +..+++.++. +.|+.++|.|+.+....  ..+++.+.++++.+++.|+++.+|+|                   
T Consensus        79 ~~~--~~~~el~~l~-~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------------------  136 (337)
T cd01302          79 GPG--DVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE-------------------  136 (337)
T ss_pred             cCc--cCHHHHHHHH-HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH-------------------
Confidence            442  2456777776 68999999998653221  56888999999999999999999988                   


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                                        +.+.+++..|.++|++|+++.++++.++++|++|++|++++||||+.+.
T Consensus       137 ------------------r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~  185 (337)
T cd01302         137 ------------------RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLD  185 (337)
T ss_pred             ------------------HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeC
Confidence                              1245777789999999999999999999999999999999999998765

Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.

>PRK09045 N-ethylammeline chlorohydrolase; Provisional

Probab=99.92  E-value=3.8e-23  Score=196.42  Aligned_cols=252  Identities=21%  Similarity=0.208  Sum_probs=165.9

Q ss_pred             ccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-CC---
Q 020079           53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---  121 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~---  121 (331)
                      .+++|+|++|++++.    .++++|+|+||+|++||+....   .++.++||++|++|||||||+|+|+.+... +.   
T Consensus         7 ~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~   86 (443)
T PRK09045          7 VDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADD   86 (443)
T ss_pred             ccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCC
Confidence            579999999998662    3688999999999999986432   135689999999999999999999976421 10   


Q ss_pred             ------------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-c--
Q 020079          122 ------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-A--  176 (331)
Q Consensus       122 ------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--  176 (331)
                                        .+++..+    .....++++||||++|+...    .....+...+.+.+..+...... +  
T Consensus        87 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~~~~~~G~R~~~~~~~~~~~~~  162 (443)
T PRK09045         87 LPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF----PEAAAEAAHQAGMRAQIGMPVLDFPTA  162 (443)
T ss_pred             CCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----HHHHHHHHHHcCCeEEEecccccCCCc
Confidence                              1122222    23345689999999997521    12234444555555433322111 1  


Q ss_pred             ccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------H
Q 020079          177 ITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------K  246 (331)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~  246 (331)
                      .....++.+++..++.++ .+.+.++..+.++.++.++++.++++++.|+++|+++++|+ ++..+.....        +
T Consensus       163 ~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~  242 (443)
T PRK09045        163 WASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLA  242 (443)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHH
Confidence            111122333333334323 35667888899988889999999999999999999999997 5555544433        3


Q ss_pred             HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       247 ~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ++.+.|+++++....+.....     ++.++++++.|+.  ++||+..     .....++++.+.|++++.++.
T Consensus       243 ~l~~~g~l~~r~~~~H~~~l~-----~~~~~~la~~g~~--i~~~P~~~~~~~~~~~~~~~l~~~Gv~v~lGtD  309 (443)
T PRK09045        243 RLARLGLLGPRLIAVHMTQLT-----DAEIALLAETGCS--VVHCPESNLKLASGFCPVAKLLQAGVNVALGTD  309 (443)
T ss_pred             HHHHcCCCCCCeEEEEecCCC-----HHHHHHHHHcCCe--EEECHHHHhhhccCCCcHHHHHHCCCeEEEecC
Confidence            467788887754333322111     2245666666764  6676542     234578999999999998775

>PRK09228 guanine deaminase; Provisional

Probab=99.92  E-value=2.7e-23  Score=196.44  Aligned_cols=251  Identities=20%  Similarity=0.146  Sum_probs=161.2

Q ss_pred             eeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccCCCCCC---------------------CC
Q 020079           69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------------------ET  123 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~---------------------~~  123 (331)
                      ++++|+|+||+|++||+..+.    +.+.++||++|++|+|||||+|+|+.+.....                     .+
T Consensus        30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~  109 (433)
T PRK09228         30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD  109 (433)
T ss_pred             CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence            478999999999999985321    12358999999999999999999987652110                     11


Q ss_pred             hhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-----cccCCChhhHHHHHHHHHH
Q 020079          124 IDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITKWDEVVSDEMEVMVKE  194 (331)
Q Consensus       124 ~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  194 (331)
                      ++..+.    +...++++||||+.|+............+...+.+.+..+.+.+..     .......+.+++..++.++
T Consensus       110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (433)
T PRK09228        110 PAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIER  189 (433)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence            222222    2345689999999997643322333444445555555433322211     0011122233344444433


Q ss_pred             -hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccccc
Q 020079          195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGHAL  261 (331)
Q Consensus       195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~~~  261 (331)
                       .+...+++.+.++..+.++++.++++.+.|+++ |+++++|+ |+..+.+...          +++.+.|+++++....
T Consensus       190 ~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~  269 (433)
T PRK09228        190 WHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFA  269 (433)
T ss_pred             HhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEE
Confidence             233456777888888899999999999999998 99999996 7777665443          4478888888765544


Q ss_pred             cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCCccccchhhhh
Q 020079          262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIR  326 (331)
Q Consensus       262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~  326 (331)
                      +.....     ++.++++++.|+.  ++||+..     .++..+++++++|++++.++.-..+...++.+
T Consensus       270 H~~~l~-----~~~~~~la~~g~~--v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~  332 (433)
T PRK09228        270 HCIHLE-----DRERRRLAETGAA--IAFCPTSNLFLGSGLFDLKRADAAGVRVGLGTDVGGGTSFSMLQ  332 (433)
T ss_pred             eccCCC-----HHHHHHHHHcCCe--EEECCccHHhhcCCCcCHHHHHHCCCeEEEecCCCCCCCCCHHH
Confidence            433222     2346677777775  5566542     34567899999999999887644333334433

>PRK12393 amidohydrolase; Provisional

Probab=99.92  E-value=6.1e-23  Score=195.40  Aligned_cols=256  Identities=20%  Similarity=0.161  Sum_probs=165.0

Q ss_pred             CccEEEECcE-EEeCCC----ceee-eEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CC---
Q 020079           52 SSKILIKGGT-VVNAHH----QQIA-DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---  121 (331)
Q Consensus        52 ~~~~~i~n~~-i~~~~~----~~~~-~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~---  121 (331)
                      |.+++|+|++ |++.+.    ..++ +|+|+||+|++||+. ...++.++||++|++|+|||||+|+|+.+.+. +.   
T Consensus         1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~   79 (457)
T PRK12393          1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TPLPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAG   79 (457)
T ss_pred             CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CCCCCCeEEeCCCCEEecCEeecccCcccccccccccc
Confidence            3568999996 676543    3444 899999999999983 22345789999999999999999999987531 11   


Q ss_pred             -------------------CChhhHH----HHHHHHHhCCceEEecCcCCC---C--CcHHHHHHHHHHHhccceeeccc
Q 020079          122 -------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPI---N--GSLTAGFEAYEKKAKNSCMDYGF  173 (331)
Q Consensus       122 -------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~  173 (331)
                                         .++++.+    .+..+++++||||++|+....   .  ......+++..+.+.|..+.+..
T Consensus        80 ~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~  159 (457)
T PRK12393         80 INQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGG  159 (457)
T ss_pred             cCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEEEccc
Confidence                               1222222    233456899999999985221   1  12344556666666664433221


Q ss_pred             c-------ccc-----cCCChhhHHHHHHHHHHh-C-C--CeEEEEEecCCC-CcCCHHHHHHHHHHHHHcCCcEEEEc-
Q 020079          174 H-------MAI-----TKWDEVVSDEMEVMVKEK-G-I--NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVHA-  235 (331)
Q Consensus       174 ~-------~~~-----~~~~~~~~~~~~~~~~~~-g-~--~~ik~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~H~-  235 (331)
                      .       ...     ....++.+++.+++.+.. + .  ..+++.+.++.+ +.++++.++++++.|+++|+++++|+ 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~  239 (457)
T PRK12393        160 ATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSHLS  239 (457)
T ss_pred             cccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeC
Confidence            1       000     001122334444444321 1 1  135566677776 78899999999999999999999997 


Q ss_pred             CCchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHH
Q 020079          236 ENGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAK  302 (331)
Q Consensus       236 e~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~  302 (331)
                      |...+.+...        +++.+.|++++.....+.....     +++++++++.|+.  ++||+.     ...+..+++
T Consensus       240 e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~lg~g~~~~~~  312 (457)
T PRK12393        240 ETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLD-----AEEIALLAQTGTG--IAHCPQSNGRLGSGIAPALA  312 (457)
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCC-----HHHHHHHHHcCCe--EEECchhhhhhcccCCCHHH
Confidence            6665555443        3456778777764333322221     3356777777876  566654     234567899


Q ss_pred             HHHcCCCEEEecC
Q 020079          303 ARKAGPNFLNTTI  315 (331)
Q Consensus       303 ~~~~Gi~v~~~~~  315 (331)
                      +.++|++|..++.
T Consensus       313 ~~~~Gv~v~lGtD  325 (457)
T PRK12393        313 MEAAGVPVSLGVD  325 (457)
T ss_pred             HHHCCCeEEEecC
Confidence            9999999998876

>TIGR02967 guan_deamin guanine deaminase

Probab=99.92  E-value=2.9e-23  Score=195.01  Aligned_cols=242  Identities=20%  Similarity=0.130  Sum_probs=158.2

Q ss_pred             eeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccCCCC-CC--------------------CC
Q 020079           69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET  123 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~--------------------~~  123 (331)
                      ++++|+|+||+|++||+....    +++.++||++|++|||||||+|+|+.+... +.                    .+
T Consensus         5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (401)
T TIGR02967         5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD   84 (401)
T ss_pred             eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence            467899999999999985331    234689999999999999999999875321 10                    01


Q ss_pred             hhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---cc--cCCChhhHHHHHHHHHH
Q 020079          124 IDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---AI--TKWDEVVSDEMEVMVKE  194 (331)
Q Consensus       124 ~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~  194 (331)
                      ++..+    .....++++||||++|+............+...+.+.+.........   +.  .....+..++.++++++
T Consensus        85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~  164 (401)
T TIGR02967        85 PDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIER  164 (401)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence            22222    22356789999999998654332233444555555555333221110   10  11112334455555533


Q ss_pred             -hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccccc
Q 020079          195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGHAL  261 (331)
Q Consensus       195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~~~  261 (331)
                       .+...++..+.++..+.++++.++++++.|+++ |+++++|+ |+..+.....          +++.+.|++++.....
T Consensus       165 ~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~  244 (401)
T TIGR02967       165 WHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFA  244 (401)
T ss_pred             HhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEE
Confidence             344457888888888889999999999999999 99999997 6766655543          4577888887764333


Q ss_pred             cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecCCc
Q 020079          262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTIPL  317 (331)
Q Consensus       262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~p~  317 (331)
                      +.....     ++.++++++.|+.  ++||++     ......++++.++|++|+.++.-.
T Consensus       245 H~~~~~-----~~~~~~l~~~g~~--v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGtD~~  298 (401)
T TIGR02967       245 HCIHLS-----DEECQRLAETGAA--IAHCPTSNLFLGSGLFNLKKALEHGVRVGLGTDVG  298 (401)
T ss_pred             ecccCC-----HHHHHHHHHcCCe--EEEChHHHHHhccCCCCHHHHHHCCCeEEEecCCC
Confidence            322221     2346777777775  566654     234457889999999999887643

This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.

>PRK15446 phosphonate metabolism protein PhnM; Provisional

Probab=99.91  E-value=4.6e-23  Score=191.45  Aligned_cols=231  Identities=19%  Similarity=0.192  Sum_probs=158.1

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccccccccccc-C---CCCCC--CChhh
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA-M---EFMGS--ETIDD  126 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~-~---~~~~~--~~~~~  126 (331)
                      ++++|+|++|++.+...+++|.|+||||++|++...  +..++||++|++|+|||||+|+|.. .   +..+.  ...++
T Consensus         2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~   79 (383)
T PRK15446          2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAA   79 (383)
T ss_pred             ccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHH
Confidence            568999999998776668999999999999998543  2347899999999999999999543 2   32121  22378


Q ss_pred             HHHHHHHHHhCCceEEecCcCCC--C--C----cHHHHH-HHHH--HHhccceeeccccccccCCChhhHHHHHHHHHHh
Q 020079          127 FFSGQAAALAGGTTMHIDFVIPI--N--G----SLTAGF-EAYE--KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK  195 (331)
Q Consensus       127 ~~~~~~~~l~~GvTtv~d~~~~~--~--~----~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (331)
                      +..+.++++++||||+.|+....  +  .    ...+.+ +...  ....++.+|+.++......+.+.++++.++. +.
T Consensus        80 ~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~-~~  158 (383)
T PRK15446         80 LAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALL-AH  158 (383)
T ss_pred             HHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHh-cC
Confidence            88999999999999999974221  1  1    122122 2222  2224578899999988876777788898888 78


Q ss_pred             CCCeEEEEEecC-CCC-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079          196 GINSFKFFMAYK-GSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT  273 (331)
Q Consensus       196 g~~~ik~~~~~~-~~~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~  273 (331)
                      |+..+|.|++.. +.. ....+.+++..  +++.|   .+|+|..+......   .             .|...+.+.++
T Consensus       159 g~~~~k~fm~~~p~~~~~~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~---~-------------~~~~~~~e~i~  217 (383)
T PRK15446        159 PRVDLVSLMDHTPGQRQFRDLEKYREYY--AGKYG---LSDEEFDAFVEERI---A-------------LSARYAPPNRR  217 (383)
T ss_pred             CCcCEEEEeCCCCccccccCHHHHHHHH--HhhcC---CCHHHHHHHHHHHH---H-------------hHhhcCHHHHH
Confidence            999999998754 211 22344455555  44667   66887765433211   1             13334457788


Q ss_pred             HHHHHHHhcCCCEEEEeCC-CHHHHHHHHHHHHcCCCEE
Q 020079          274 RAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGPNFL  311 (331)
Q Consensus       274 ~~~~l~~~~g~~~~i~H~~-~~~~~~~i~~~~~~Gi~v~  311 (331)
                      +.++.++.+|.++ .+|.. ..   +.++++++.|+.+.
T Consensus       218 ~~v~~A~~~g~~v-~sH~~~~~---~~i~~a~~~Gv~~~  252 (383)
T PRK15446        218 AIAALARARGIPL-ASHDDDTP---EHVAEAHALGVAIA  252 (383)
T ss_pred             HHHHHHHHCCCce-eecCCCCH---HHHHHHHHcCCcee
Confidence            9999999999987 77873 32   33555555555444

>PRK08393 N-ethylammeline chlorohydrolase; Provisional

Probab=99.91  E-value=2.7e-22  Score=189.50  Aligned_cols=264  Identities=23%  Similarity=0.262  Sum_probs=170.1

Q ss_pred             cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC------------
Q 020079           54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM------------  119 (331)
Q Consensus        54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~------------  119 (331)
                      +++|+|++|++++.  ..+++|+|+||+|++|++.... +..++||++|++|+|||||+|+|+.+...            
T Consensus         2 ~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~   80 (424)
T PRK08393          2 SILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINK-PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEW   80 (424)
T ss_pred             eEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCC-CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHH
Confidence            47999999999876  3578999999999999985433 34579999999999999999999976421            


Q ss_pred             ---------CCCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-cccCCChhhH
Q 020079          120 ---------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVS  185 (331)
Q Consensus       120 ---------~~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  185 (331)
                               ...++++++.    +...++++||||+.|+..    ...+.++...+.+.+..+.+.... .......+.+
T Consensus        81 l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~----~~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~l  156 (424)
T PRK08393         81 LQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF----HMEEVAKATLEVGLRGYLSYGMVDLGDEEKREKEI  156 (424)
T ss_pred             HHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEecccc----CHHHHHHHHHHhCCeEEEeceEecCCCccchHHHH
Confidence                     0122334332    345568999999999853    223445555555555444332211 1111112222


Q ss_pred             HHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcCC
Q 020079          186 DEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELGI  253 (331)
Q Consensus       186 ~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G~  253 (331)
                      ++..+..+.   .+...+...+.++.++.++++.++++++.|+++|+++++|+ |+..+.....        +.+.+.|+
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~  236 (424)
T PRK08393        157 KETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGF  236 (424)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCC
Confidence            222222221   23334566667888888999999999999999999999996 6666555443        34678888


Q ss_pred             CCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC-Cccccchhhhhh
Q 020079          254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI-PLCDSCSNIIRM  327 (331)
Q Consensus       254 ~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~~~~  327 (331)
                      ++++....+.....     .++++++.+.|+.  ++||+..     .....++++.++|++|+.++. ++.+...++.+.
T Consensus       237 l~~~~~~~H~~~l~-----~~~l~~la~~g~~--v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~  309 (424)
T PRK08393        237 LNEDVIAAHGVWLS-----SRDIRILASAGVT--VAHNPASNMKLGSGVMPLRKLLNAGVNVALGTDGAASNNNLDMLRE  309 (424)
T ss_pred             CCCCcEEEEeecCC-----HHHHHHHHhcCCE--EEECHHHHHhhccCCCCHHHHHHCCCcEEEecCCCccCCchhHHHH
Confidence            88764332222111     2345677777764  6777642     234568999999999998885 333333344444


Q ss_pred             hc
Q 020079          328 VE  329 (331)
Q Consensus       328 ~~  329 (331)
                      |.
T Consensus       310 ~~  311 (424)
T PRK08393        310 MK  311 (424)
T ss_pred             HH
Confidence            43

>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases

Probab=99.91  E-value=1.1e-22  Score=190.86  Aligned_cols=255  Identities=18%  Similarity=0.166  Sum_probs=151.8

Q ss_pred             EECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC---------------
Q 020079           57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------------  121 (331)
Q Consensus        57 i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~---------------  121 (331)
                      |+|++|+|+. ..+++|+|+||+|++||+....+++.++||++|++|+|||||+|+|+.+.+...               
T Consensus         2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~   80 (398)
T cd01293           2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAII   80 (398)
T ss_pred             eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCCCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHH
Confidence            7899999974 578899999999999998754445678999999999999999999997642110               


Q ss_pred             --------CChhhHH----HHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHH-HHhccceeeccccccccCC-Chhh
Q 020079          122 --------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SLTAGFEAYE-KKAKNSCMDYGFHMAITKW-DEVV  184 (331)
Q Consensus       122 --------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  184 (331)
                              .++++.+    .....++++||||++++......   ...+...... +...+.............. .++.
T Consensus        81 ~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (398)
T cd01293          81 AWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGG  160 (398)
T ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCH
Confidence                    1222222    23456789999999877543321   1112222221 1111111111000000001 1333


Q ss_pred             HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchh----hHHHHHHHHHcCCCCcccc
Q 020079          185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDA----VFEGQKRMIELGITGPEGH  259 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~----~~~~~~~~~~~G~~~~~~~  259 (331)
                      .+.+++.. +.|.+.++.+ .......++++.++++++.|+++|+++++|+ +...+    .....+.+.+.|+. +...
T Consensus       161 ~~~v~~~~-~~g~~~~~~~-~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~-~~~~  237 (398)
T cd01293         161 EELMREAL-KMGADVVGGI-PPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQ-GRVT  237 (398)
T ss_pred             HHHHHHHH-HhCCCEEeCC-CCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCC-CCEE
Confidence            44455555 4455444322 2222345678999999999999999999997 44332    22234456677765 2222


Q ss_pred             cccCChHHH--HHHHHHHHHHHHhcCCCEEEEeCCC------------HHHHHHHHHHHHcCCCEEEecC
Q 020079          260 ALSRPPLLE--GEATTRAIRLAEFVNTPLYVVHVMS------------MDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       260 ~~~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~~------------~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ..+.....+  .....+.++++++.|+.+..+..++            ......+++++++|++|..+|.
T Consensus       238 i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~v~lGTD  307 (398)
T cd01293         238 CSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAAGVNVALGSD  307 (398)
T ss_pred             eeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCcHHHHHHCCCeEEECCC
Confidence            222111110  1123456778888887644433333            1345679999999999998775

Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.

>PRK06038 N-ethylammeline chlorohydrolase; Provisional

Probab=99.91  E-value=3.3e-22  Score=189.12  Aligned_cols=251  Identities=24%  Similarity=0.276  Sum_probs=163.3

Q ss_pred             ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-C---------
Q 020079           53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------  120 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~---------  120 (331)
                      ++++|+|++|++++.  ..+++|+|+||+|++|++.... +..++||+.|++|+|||||+|+|+.+... +         
T Consensus         2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~-~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~   80 (430)
T PRK06038          2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG-DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAE   80 (430)
T ss_pred             CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC-CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHH
Confidence            358999999997653  4578999999999999986432 34579999999999999999999976421 0         


Q ss_pred             -----------CCChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-cccCCChhh
Q 020079          121 -----------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDEVV  184 (331)
Q Consensus       121 -----------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  184 (331)
                                 ..++++.+    .....++++||||++|+...    .....+...+.+.+....+.... .......+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~----~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~  156 (430)
T PRK06038         81 WLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY----MDEVAKAVEESGLRAALSYGMIDLGDDEKGEAE  156 (430)
T ss_pred             HHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC----HHHHHHHHHHhCCeEEEEchhccCCCccchHHH
Confidence                       11223332    23445688999999998632    12334444455544333222110 001111223


Q ss_pred             HHHHHHHHHHh-C--CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcC
Q 020079          185 SDEMEVMVKEK-G--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELG  252 (331)
Q Consensus       185 ~~~~~~~~~~~-g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G  252 (331)
                      +++..++++.. +  ...++..++++.+..++++.++++++.|+++|+++++|+ ++..+.....        +++.+.|
T Consensus       157 l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g  236 (430)
T PRK06038        157 LKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIG  236 (430)
T ss_pred             HHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcC
Confidence            33444444322 1  235667778888889999999999999999999999997 5554433222        4467888


Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +++++....+.....     ++.++++++.|+.  ++||+..     .....++++.++|++|+.++.
T Consensus       237 ~l~~r~~~~H~~~l~-----~~~~~~la~~g~~--v~~~P~~n~~~~~~~~p~~~~~~~Gv~v~lGtD  297 (430)
T PRK06038        237 FLGPDVLAAHCVWLS-----DGDIEILRERGVN--VSHNPVSNMKLASGIAPVPKLLERGVNVSLGTD  297 (430)
T ss_pred             CCCCCeEEEEEecCC-----HHHHHHHHhcCCE--EEEChHHhhhhccCCCCHHHHHHCCCeEEEeCC
Confidence            888764333322221     2246777777876  5565532     244578999999999998886

>cd01303 GDEase Guanine deaminase (GDEase)

Probab=99.90  E-value=2e-22  Score=190.44  Aligned_cols=241  Identities=19%  Similarity=0.101  Sum_probs=157.2

Q ss_pred             eeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccCCCC-CC---------------------C
Q 020079           69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------------------E  122 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~---------------------~  122 (331)
                      ++++|+|+||+|++||+....    +++.++||++|++|+|||||+|+|+.+... +.                     .
T Consensus        25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~  104 (429)
T cd01303          25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA  104 (429)
T ss_pred             CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence            578999999999999985422    235689999999999999999999976421 11                     0


Q ss_pred             ChhhH----HHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---cc--cCCChhhHHHHHHHHH
Q 020079          123 TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---AI--TKWDEVVSDEMEVMVK  193 (331)
Q Consensus       123 ~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~  193 (331)
                      +++..    ......++++||||++|+...........+++..+.+.|..+.+....   +.  .....+..++..++.+
T Consensus       105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  184 (429)
T cd01303         105 DPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIE  184 (429)
T ss_pred             CHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence            11122    123345689999999988654332344555666666666444322211   10  0111122333333332


Q ss_pred             H-hC-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC-CcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccc
Q 020079          194 E-KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGH  259 (331)
Q Consensus       194 ~-~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~  259 (331)
                      + .+ ...+...++++.++.++++.++++++.|+++| +++++|+ |+..+.+...          +++.+.|+++++..
T Consensus       185 ~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~  264 (429)
T cd01303         185 RWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTV  264 (429)
T ss_pred             HHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcE
Confidence            2 22 13567777888888999999999999999999 9999997 7666554443          44677888877644


Q ss_pred             cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecCC
Q 020079          260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~p  316 (331)
                      ..+.....     ++.++++++.|+.  ++||+.     ......++++.++|++|+.++.-
T Consensus       265 l~H~~~l~-----~~~~~~l~~~g~~--v~~~P~sn~~l~~g~~~~~~~~~~Gv~v~lGtD~  319 (429)
T cd01303         265 LAHCVHLS-----EEEFNLLKERGAS--VAHCPTSNLFLGSGLFDVRKLLDAGIKVGLGTDV  319 (429)
T ss_pred             EEeCCCCC-----HHHHHHHHHcCCE--EEECccchhhhccCCCCHHHHHHCCCeEEEeccC
Confidence            43333222     2346677777775  555554     23456789999999999988754

Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.

>PRK08204 hypothetical protein; Provisional

Probab=99.90  E-value=1.8e-22  Score=192.32  Aligned_cols=255  Identities=20%  Similarity=0.242  Sum_probs=160.2

Q ss_pred             ccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC--------
Q 020079           53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--------  120 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~--------  120 (331)
                      .+++|+|++|++.++    ..+++|+|+||+|++|++..+.+ +.++||++|++|+|||||+|+|+.+....        
T Consensus         2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~-~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~   80 (449)
T PRK08204          2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP-DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTL   80 (449)
T ss_pred             CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcH
Confidence            457899999997553    46889999999999999864433 56899999999999999999998643110        


Q ss_pred             -------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeecccccccc---
Q 020079          121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAIT---  178 (331)
Q Consensus       121 -------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---  178 (331)
                                   ..++++.+    .....++++||||++|+......  .....++...+.+.+..+.........   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~  160 (449)
T PRK08204         81 QTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWP  160 (449)
T ss_pred             HHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccCCCCCCC
Confidence                         11222222    23356799999999997644321  233444555555544333221111000   


Q ss_pred             -CCChhhHHHHHHHHHH--hCCC-eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCch-hhHHHHHHHHHcC
Q 020079          179 -KWDEVVSDEMEVMVKE--KGIN-SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGD-AVFEGQKRMIELG  252 (331)
Q Consensus       179 -~~~~~~~~~~~~~~~~--~g~~-~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~-~~~~~~~~~~~~G  252 (331)
                       ....+...+++.+.++  .+.+ .+.....++++..++++.++++++.|+++|+++++|+ |+.. ......+.+.+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g  240 (449)
T PRK08204        161 FDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAG  240 (449)
T ss_pred             cchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCC
Confidence             0111223333333322  2322 3444455666677889999999999999999999997 4432 2223345677888


Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+++....+.....     .+.++++.+.|+.+  +||+..     .....++++.++|++|+.++.
T Consensus       241 ~~~~~~~i~H~~~~~-----~~~~~~la~~g~~v--~~~P~~~~~~g~~~~~~~~~~~~Gv~v~lGtD  301 (449)
T PRK08204        241 LLGPDLNLVHGNDLS-----DDELKLLADSGGSF--SVTPEIEMMMGHGYPVTGRLLAHGVRPSLGVD  301 (449)
T ss_pred             CCCCCeEEEecCCCC-----HHHHHHHHHcCCCE--EEChHHHhhhcCCCCcHHHHHhcCCceeeccc
Confidence            877664333322221     23466777778764  455432     234568999999999998775

>PRK06151 N-ethylammeline chlorohydrolase; Provisional

Probab=99.90  E-value=2.5e-22  Score=192.69  Aligned_cols=260  Identities=18%  Similarity=0.150  Sum_probs=164.2

Q ss_pred             cEEEECcEEEeCCC-----ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC-----C-----
Q 020079           54 KILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME-----F-----  118 (331)
Q Consensus        54 ~~~i~n~~i~~~~~-----~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~-----~-----  118 (331)
                      .++|+|++|++.++     .++++|+|+||+|++||+.... ++.++||+.|++|+|||||+|+|+.+.     .     
T Consensus         2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~-~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~   80 (488)
T PRK06151          2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG-EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPG   80 (488)
T ss_pred             eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC-CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchh
Confidence            47899999976542     3678999999999999985432 245799999999999999999997521     0     


Q ss_pred             --CC--------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC-------cHHHHHHHHHHHhccceeec
Q 020079          119 --MG--------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-------SLTAGFEAYEKKAKNSCMDY  171 (331)
Q Consensus       119 --~~--------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  171 (331)
                        .+              ..++++.+    .+...++++||||++|+......       ...+.++...+.+.+..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~  160 (488)
T PRK06151         81 WAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGP  160 (488)
T ss_pred             HHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEEecc
Confidence              00              12333333    23455789999999987532211       12344445555554432221


Q ss_pred             cccc------------cccC--CChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079          172 GFHM------------AITK--WDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH  234 (331)
Q Consensus       172 ~~~~------------~~~~--~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H  234 (331)
                      .+..            ....  ...+.+.+..++++   ..|.+.+|..++++....++++.++++++.|+++|+++++|
T Consensus       161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H  240 (488)
T PRK06151        161 AYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLH  240 (488)
T ss_pred             hhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence            1100            0000  01122333344332   24667788888888888899999999999999999999999


Q ss_pred             c-CCchhhHHHH--------HHHHHcCCCCccc---ccccCCh-HHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHH
Q 020079          235 A-ENGDAVFEGQ--------KRMIELGITGPEG---HALSRPP-LLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDA  296 (331)
Q Consensus       235 ~-e~~~~~~~~~--------~~~~~~G~~~~~~---~~~~~~~-~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~  296 (331)
                      + ++..+.+...        +++.+.|+++++.   |+....+ ..+.....+.++++++.|+.  ++||+.     ...
T Consensus       241 ~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~--v~~~P~~~~~~g~~  318 (488)
T PRK06151        241 CAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVS--IVHCPLVSARHGSA  318 (488)
T ss_pred             ECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCE--EEECchhhhhhccc
Confidence            7 6665544332        4466778776653   2322111 00011122456677777765  667653     234


Q ss_pred             HHHHHHHHHcCCCEEEecCC
Q 020079          297 MEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       297 ~~~i~~~~~~Gi~v~~~~~p  316 (331)
                      +..++++.++|++|+.++..
T Consensus       319 ~~p~~~l~~~Gv~v~lGtD~  338 (488)
T PRK06151        319 LNSFDRYREAGINLALGTDT  338 (488)
T ss_pred             cccHHHHHHCCCcEEEECCC
Confidence            46789999999999988763

>PRK08418 chlorohydrolase; Provisional

Probab=99.90  E-value=4.5e-22  Score=186.56  Aligned_cols=260  Identities=13%  Similarity=0.048  Sum_probs=160.6

Q ss_pred             EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-CC-----
Q 020079           55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-----  121 (331)
Q Consensus        55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~-----  121 (331)
                      .+|+|++|++++.    .++++|+|+ |+|++||+....   .++.++||+.|++|+|||||+|+|+.+... +.     
T Consensus         2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~   80 (408)
T PRK08418          2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD   80 (408)
T ss_pred             EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence            5789999998762    368899999 999999984221   123468999999999999999999975421 10     


Q ss_pred             --------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChh
Q 020079          122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV  183 (331)
Q Consensus       122 --------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (331)
                                    .+++..+    .+..+++++||||+.|+....     ...++..+.+.+..+.............+
T Consensus        81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~-----~~~~a~~~~GiR~~~~~~~~~~~~~~~~~  155 (408)
T PRK08418         81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAISSFG-----IDLEICAKSPLRVVFFNEILGSNASAVDE  155 (408)
T ss_pred             hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecch-----hhHHHHHhcCCeEEEEeeeeCCCccchhh
Confidence                          1111211    233457899999999886432     12344555555543321111100001011


Q ss_pred             hHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHH-------------
Q 020079          184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK-------------  246 (331)
Q Consensus       184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~-------------  246 (331)
                      ..+.+.+..+.   ...+.++..++++++++++++.++++.+.|+++|+++++|+ |+..+.++..+             
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~  235 (408)
T PRK08418        156 LYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFL  235 (408)
T ss_pred             hHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhc
Confidence            11111111111   12345788889999999999999999999999999999995 77777655432             


Q ss_pred             -----------HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCE
Q 020079          247 -----------RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNF  310 (331)
Q Consensus       247 -----------~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v  310 (331)
                                 ++...|  ++.....+....     -+++++++++.|+.  ++||+..     .+...++++.++|++|
T Consensus       236 ~~~~~~~~pv~~l~~~g--~~~~~~~H~~~~-----~~~di~~la~~g~~--v~~cP~sn~~lg~g~~p~~~~~~~Gi~v  306 (408)
T PRK08418        236 KEPKPLYTPKEFLELFK--GLRTLFTHCVYA-----SEEELEKIKSKNAS--ITHCPFSNRLLSNKALDLEKAKKAGINY  306 (408)
T ss_pred             ccccccCCHHHHHHHhC--CCCeEEEecccC-----CHHHHHHHHHcCCc--EEECHhHHHHhcCCCccHHHHHhCCCeE
Confidence                       122222  122222222211     13456777777765  6777643     3456789999999999


Q ss_pred             EEecC-Cccccchhhhhhhc
Q 020079          311 LNTTI-PLCDSCSNIIRMVE  329 (331)
Q Consensus       311 ~~~~~-p~~~~~~~~~~~~~  329 (331)
                      +.+|. +..+....+.+.|+
T Consensus       307 ~lGtD~~~~~~~~~~~~em~  326 (408)
T PRK08418        307 SIATDGLSSNISLSLLDELR  326 (408)
T ss_pred             EEeCCCCCCCCCcCHHHHHH
Confidence            98876 44555555555444

>COG3964 Predicted amidohydrolase [General function prediction only]

Probab=99.89  E-value=3.7e-22  Score=170.27  Aligned_cols=272  Identities=16%  Similarity=0.154  Sum_probs=179.0

Q ss_pred             CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079           51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF  128 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~  128 (331)
                      |+.+++++|++++++..  ....+|.|.||||++++ ..+.+...++||++|.+|.||+||.|+|++..  +.....+. 
T Consensus         2 mqfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa~tq~Ida~Gc~VspG~iDlHvHvy~g--gt~~~v~p-   77 (386)
T COG3964           2 MQFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHVHVYYG--GTEGGVRP-   77 (386)
T ss_pred             CccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCChhheEEccCccEeccCeeeeeeEEecC--CCccCcCH-
Confidence            46789999999998764  45779999999999999 45556668999999999999999999999876  33222222 


Q ss_pred             HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc---ceeeccccccccCCC------hhhHHHHHHHHHHhC--C
Q 020079          129 SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMAITKWD------EVVSDEMEVMVKEKG--I  197 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g--~  197 (331)
                        .+....+||||++|.++.+..+.....+...+....   ..++....+ ....+      .-..+++.++.+++.  .
T Consensus        78 --d~~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~G-l~a~nE~~d~~nid~d~i~aa~reh~d~i  154 (386)
T COG3964          78 --DMYGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPG-LTASNELYDPDNIDEDKIHAAFREHRDVI  154 (386)
T ss_pred             --HHccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCcc-eeeehhhCChhhCCHHHHHHHHHhCcCcE
Confidence              345688999999999876665554444444444322   233322211 11111      112455666664432  2


Q ss_pred             CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh-hHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHH
Q 020079          198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI  276 (331)
Q Consensus       198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~  276 (331)
                      .++|+-++.+..-.....-++...+.|++.++|+++|..++.. ..+..+.+..-.+...-.++.......+...+....
T Consensus       155 vGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL~~GDIitHcfngkpn~~l~~dg~vr~~v  234 (386)
T COG3964         155 VGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLRRGDIITHCFNGKPNTILTDDGVVRAEV  234 (386)
T ss_pred             EEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhccCCceeeeeccCCCCCccccchhHHHHH
Confidence            3567665543222223345667777888999999999854443 355555544433333222333333445556788889


Q ss_pred             HHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCC---EEEecC-------Cccccchhhhhhhc
Q 020079          277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPN---FLNTTI-------PLCDSCSNIIRMVE  329 (331)
Q Consensus       277 ~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~---v~~~~~-------p~~~~~~~~~~~~~  329 (331)
                      +++.+.|+++.+.|.....+++..+++-+.|+-   |+.|.+       |-|...+-|+|+|.
T Consensus       235 rra~erGV~fD~ghG~asfsf~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla~~mSKlla  297 (386)
T COG3964         235 RRARERGVIFDAGHGRASFSFNVARRAIANGLLPDIISSDLHTITKLNGPVYDLAWIMSKLLA  297 (386)
T ss_pred             HHHHhcceEEEccCCcceeeHHHHHHHHhcCCCcceeeccceeeeecCchHHHHHHHHHHHHH
Confidence            999999999999999888888999999999972   444433       55556666777664

>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=184.26  Aligned_cols=268  Identities=24%  Similarity=0.270  Sum_probs=176.4

Q ss_pred             cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-----------
Q 020079           54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-----------  119 (331)
Q Consensus        54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-----------  119 (331)
                      .++++|..++..++   .+++++.|+||+|+.||+....+++.++||++|++|+|||||+|+|+.+...           
T Consensus         3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~   82 (421)
T COG0402           3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLE   82 (421)
T ss_pred             ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCCCCceeecCCCCEeccCccccccchHHHHHhhhhcccchHH
Confidence            36788888887643   2579999999999999997654356789999999999999999999887521           


Q ss_pred             -----------CCCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-----cccC
Q 020079          120 -----------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITK  179 (331)
Q Consensus       120 -----------~~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  179 (331)
                                 ...++++.+.    ....++++|+|+++.+...........++...+.+.+......+..     ....
T Consensus        83 wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~  162 (421)
T COG0402          83 WLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAE  162 (421)
T ss_pred             HHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCCCCccccc
Confidence                       1123444433    3345688999997755444333334456666666655333322221     1111


Q ss_pred             CChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHH--------HHH
Q 020079          180 WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK--------RMI  249 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~--------~~~  249 (331)
                      ..+. +++.+++.++ .+...+.+...++.++.++++.++.+.+.++++|+++++|+ |+.+++.+..+        ++.
T Consensus       163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~  241 (421)
T COG0402         163 TDEE-LEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLD  241 (421)
T ss_pred             chHH-HHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHH
Confidence            1111 2333343322 34446677778898899999999999999999999999996 88888887764        466


Q ss_pred             HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecCCccccc-hh
Q 020079          250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTIPLCDSC-SN  323 (331)
Q Consensus       250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~p~~~~~-~~  323 (331)
                      +.|+++++....+.....     ++.+.+.++.|+.  ++||+.     ..++..++++.++|++++.+|.-...+. ..
T Consensus       242 ~~g~l~~~~~~~H~~~~~-----~~e~~~l~~~g~~--v~~cP~sN~~L~sG~~p~~~~~~~gv~v~~gTD~~~~~~~~d  314 (421)
T COG0402         242 LLGLLGSHTLLAHCVHLS-----EEELELLAESGAS--VVHCPRSNLKLGSGIAPVRRLLERGVNVALGTDGAASNNVLD  314 (421)
T ss_pred             HcCCCCCCeEEEEeccCC-----HHHHHHHhhCCCe--EEECcchhccccCCCCCHHHHHHcCCCEEEecCCccccChHH
Confidence            888888655444433222     2234555566765  666653     3456779999999999987666533222 44


Q ss_pred             hhhhhc
Q 020079          324 IIRMVE  329 (331)
Q Consensus       324 ~~~~~~  329 (331)
                      +.+.|+
T Consensus       315 ~l~~~~  320 (421)
T COG0402         315 MLREMR  320 (421)
T ss_pred             HHHHHH
Confidence            444443

>PRK05985 cytosine deaminase; Provisional

Probab=99.89  E-value=3.7e-21  Score=180.06  Aligned_cols=254  Identities=19%  Similarity=0.173  Sum_probs=156.4

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCC---------
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET---------  123 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~---------  123 (331)
                      .+++|+|++|+++.   ..+|+|+||+|++|++....+++.++||++|++|+|||||+|+|+.....+...         
T Consensus         2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~   78 (391)
T PRK05985          2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSL   78 (391)
T ss_pred             CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCH
Confidence            46899999999875   568999999999999865433456799999999999999999999754211110         


Q ss_pred             --------------hhhH----HHHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccce---eecccccccc
Q 020079          124 --------------IDDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSC---MDYGFHMAIT  178 (331)
Q Consensus       124 --------------~~~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~  178 (331)
                                    .++.    ....+.++++|+|+++|+....+.    .....++.......+..   +.+.......
T Consensus        79 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~  158 (391)
T PRK05985         79 RERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLS  158 (391)
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccC
Confidence                          0011    223456789999999988654322    22222222222111222   2222111111


Q ss_pred             CCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCch----hhHHHHHHHHHcCC
Q 020079          179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGD----AVFEGQKRMIELGI  253 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~----~~~~~~~~~~~~G~  253 (331)
                        .....+.+++.. +.|.+.+ ..+.++....++++.+.++++.|+++|+++++|+ +..+    ......+.+.+.|.
T Consensus       159 --~~~~~~ll~~~l-~~g~~~~-gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~  234 (391)
T PRK05985        159 --RPGTAELLDAAL-RAGADVV-GGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGM  234 (391)
T ss_pred             --CcCHHHHHHHHH-HcCCCEE-eCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCC
Confidence              111234455555 4565433 2234455566788999999999999999999996 4433    23333445556666


Q ss_pred             CCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecC
Q 020079          254 TGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       254 ~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .+..  .|+..... .+.....+.++++++.|+.+..+. .....+..++++.+.|++|..++.
T Consensus       235 ~~~~~i~H~~~l~~-~~~~~~~~~i~~lae~g~~v~~~~-~~~~~~~~~~~l~~~Gv~v~lGtD  296 (391)
T PRK05985        235 QGRVAVSHAFCLGD-LPEREVDRLAERLAEAGVAIMTNA-PGSVPVPPVAALRAAGVTVFGGND  296 (391)
T ss_pred             CCCEehhhhhhhhc-CCHHHHHHHHHHHHHcCCeEEEeC-CCCCCCCCHHHHHHCCCeEEEecC
Confidence            4321  22221111 112234567788888887654332 335567889999999999998764

>PRK07572 cytosine deaminase; Validated

Probab=99.88  E-value=6.3e-21  Score=180.21  Aligned_cols=252  Identities=15%  Similarity=0.149  Sum_probs=156.1

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CC----------
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----------  121 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~----------  121 (331)
                      ++++|+|++++++.  ...+|+|+||+|++|++..+. ...++||++|++|+|||||+|+|+.+.+. +.          
T Consensus         2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~   78 (426)
T PRK07572          2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA-EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLL   78 (426)
T ss_pred             CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC-CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHH
Confidence            35789999998864  356899999999999986432 24579999999999999999999976421 11          


Q ss_pred             ------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCc--HHHHHHHHHH-Hhccce---eeccccccccC
Q 020079          122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGS--LTAGFEAYEK-KAKNSC---MDYGFHMAITK  179 (331)
Q Consensus       122 ------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~--~~~~~~~~~~-~~~~~~---~~~~~~~~~~~  179 (331)
                                  .++++++    ...+.++++|||+++|+.......  ....+...+. .+.+..   ..+......  
T Consensus        79 e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~g~~--  156 (426)
T PRK07572         79 EGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGVL--  156 (426)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEEeccChhhc--
Confidence                        2334443    334567899999999975432221  1111212222 112211   111111111  


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCC--HHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH----HHHHHcC
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN--DELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ----KRMIELG  252 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~--~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~----~~~~~~G  252 (331)
                      ...+..+.++++. +.|++.+..  .++....++  .+.++.++++|+++|+++++|+ ++..+.....    +++.+.|
T Consensus       157 ~~~~~~~~~~~~l-~~g~d~iGg--~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G  233 (426)
T PRK07572        157 RSPGAVDNLERAL-DMGVDVVGG--IPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLG  233 (426)
T ss_pred             cCccHHHHHHHHH-HcCCCEEeC--CCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhC
Confidence            1122345666666 567766632  133333333  4899999999999999999998 6665544432    4456779


Q ss_pred             CCCcccccccCChHHH--HHHHHHHHHHHHhcCCCEEEEeCCCH--------------HHHHHHHHHHHcCCCEEEecC
Q 020079          253 ITGPEGHALSRPPLLE--GEATTRAIRLAEFVNTPLYVVHVMSM--------------DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~~~--------------~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+ .....|.....+  ....++.++++++.|+.  ++||+..              .++..++++.++|++|..++.
T Consensus       234 ~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~--vv~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~~GV~v~lGtD  309 (426)
T PRK07572        234 LQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVN--AIANPLINITLQGRHDTYPKRRGMTRVPELMAAGINVAFGHD  309 (426)
T ss_pred             CCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCe--EEECchhhhhhcCCCCCCCCCCCCcCHHHHHHCCCcEEEecC
Confidence            877 322222211111  22345567888888876  5665532              244568999999999998875

>PRK12394 putative metallo-dependent hydrolase; Provisional

Probab=99.88  E-value=2.5e-21  Score=180.24  Aligned_cols=254  Identities=17%  Similarity=0.173  Sum_probs=149.9

Q ss_pred             CccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079           52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS  129 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~  129 (331)
                      +.+++|+|++|+++..  ..+++|+|+||+|++|++... ++..++||++|++|+|||||+|+|+..+  +.   +....
T Consensus         2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PGliD~H~H~~~~--g~---~~~~~   75 (379)
T PRK12394          2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-ASETRIIHADGCIVTPGLIDYHAHVFYD--GT---EGGVR   75 (379)
T ss_pred             CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-CCCCeEEECCCCEEECCEEEeeecCCCC--Cc---ccccC
Confidence            3568999999998653  456789999999999987532 2345899999999999999999999654  21   11122


Q ss_pred             HHHHHHhCCceEEecCcCCCCCcHHHHHHH---HHHHhccceeeccccccccC-----CChh--hHHHHHHHHHH--hCC
Q 020079          130 GQAAALAGGTTMHIDFVIPINGSLTAGFEA---YEKKAKNSCMDYGFHMAITK-----WDEV--VSDEMEVMVKE--KGI  197 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~--~g~  197 (331)
                      ....++++||||++|++.....+.....+.   ..+.+.+..+++.+......     ....  ..++++++.++  .++
T Consensus        76 ~~~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T PRK12394         76 PDMYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNVL  155 (379)
T ss_pred             HHHHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCcE
Confidence            335588999999999975433222111121   22222344455444332210     0101  13566666643  355


Q ss_pred             CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch-hhHHHHHHHHHcCCCCcccccccCC---hHHHHHHHH
Q 020079          198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRP---PLLEGEATT  273 (331)
Q Consensus       198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~G~~~~~~~~~~~~---~~~e~~~i~  273 (331)
                      .++|+++.+......+++.+++.++.|+++|+++++|+++.. +..+.. .+...|..  ..|+.+..   ...+...+.
T Consensus       156 ~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~-~~l~~g~~--~~H~~~~~~~~~~~~~~~~~  232 (379)
T PRK12394        156 QGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKELV-SLLRRGDI--IAHAFHGKGSTILTEEGAVL  232 (379)
T ss_pred             EEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHH-HhcCCCCE--EEecCCCCCCCcCCCCCCCh
Confidence            667766543322246789999999999999999999985533 322111 12222221  12222100   011112233


Q ss_pred             HHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC-CEEEec
Q 020079          274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP-NFLNTT  314 (331)
Q Consensus       274 ~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi-~v~~~~  314 (331)
                      +.+..+.+.|..+.+.|-.+...++.+.++.++|+ ++..+|
T Consensus       233 ~~~~~~~~~G~~~~~~~g~s~~~~~~~~~~l~~G~~~~~lgT  274 (379)
T PRK12394        233 AEVRQARERGVIFDAANGRSHFDMNVARRAIANGFLPDIISS  274 (379)
T ss_pred             HHHHHHHhCCeEEEecCCccccchHHHHHHHHCCCCceEEEC
Confidence            44556667776443444333344577788899995 776554

>PRK07213 chlorohydrolase; Provisional

Probab=99.88  E-value=8.6e-21  Score=176.37  Aligned_cols=241  Identities=19%  Similarity=0.228  Sum_probs=148.0

Q ss_pred             EEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC------------
Q 020079           55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------------  120 (331)
                      ++|+|++|+++..  ..+++|+|+||+|.+|++..   ++.++||++|++| |||||+|+|+.+....            
T Consensus         2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~---~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~   77 (375)
T PRK07213          2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV---HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELV   77 (375)
T ss_pred             EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC---CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHc
Confidence            6899999999764  46788999999999999752   3458999999999 9999999999874210            


Q ss_pred             ------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc-cccccCCChh
Q 020079          121 ------------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-HMAITKWDEV  183 (331)
Q Consensus       121 ------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  183 (331)
                                  ..++++.+    ..+..++++||||++|+.....    ..++...+......+...+ ........+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~~----~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~  153 (375)
T PRK07213         78 KPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGGI----KGINLLKKASSDLPIKPIILGRPTEADENE  153 (375)
T ss_pred             cCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcCh----hHHHHHHHHHHcCCCceEEecCCCcccchh
Confidence                        11223333    2344568899999999743221    1122222221111111111 0000111122


Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHH--------HHHHHHcCCC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEG--------QKRMIELGIT  254 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~--------~~~~~~~G~~  254 (331)
                      ..+.+++..+.  ..+    +++++...++.+.++++++.|+++|+++++|+ |...+....        .+++.+.|+.
T Consensus       154 ~~~~~~~~~~~--~~g----~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~  227 (375)
T PRK07213        154 LKKEIREILKN--SDG----IGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK  227 (375)
T ss_pred             hHHHHHHHHHh--ccc----ccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC
Confidence            23334333321  222    23444556789999999999999999999997 666554332        2456777876


Q ss_pred             CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC---HHHHHHHHHHHHcCCCEEEecCC
Q 020079          255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~---~~~~~~i~~~~~~Gi~v~~~~~p  316 (331)
                       +.. ..+.....     ++.++++++.|+.+.+++.++   ...+..+++++++|++|+.+|.-
T Consensus       228 -~~~-i~H~~~~~-----~~~i~~la~~g~~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGTD~  285 (375)
T PRK07213        228 -PDF-IVHATHPS-----NDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLEKGILLGIGTDN  285 (375)
T ss_pred             -CCE-EEECCCCC-----HHHHHHHHHcCCcEEECCcchhhhccCCccHHHHHHCCCEEEEeeCC
Confidence             322 22222111     234677788887654444333   23567799999999999988763

>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM

Probab=99.88  E-value=2.5e-21  Score=179.30  Aligned_cols=212  Identities=18%  Similarity=0.163  Sum_probs=148.2

Q ss_pred             EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC----CCCC--ChhhHHH
Q 020079           56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF----MGSE--TIDDFFS  129 (331)
Q Consensus        56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~----~~~~--~~~~~~~  129 (331)
                      +|+|++|+++++...++|.|+||+|++|++...  ...++||++|++|+|||||+|+|.....    .+..  ..+.+..
T Consensus         1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~~~~~~~~~~~   78 (376)
T TIGR02318         1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGVDWPIDAAIVE   78 (376)
T ss_pred             CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEeccEEEcccCccccCcCCCCCCCcchHHHHHH
Confidence            489999998877666799999999999998432  2356899999999999999999987610    1322  2377888


Q ss_pred             HHHHHHhCCceEEecCcCCC---CC-cHHH----HHHHHHHHhcc--ceeeccccccccCCChhhHHHHHHHHHHhCCCe
Q 020079          130 GQAAALAGGTTMHIDFVIPI---NG-SLTA----GFEAYEKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS  199 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~---~~-~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  199 (331)
                      ..++++++||||++|+....   +. ...+    .++.......+  ..+++.++.+......+..+++..+. +.|...
T Consensus        79 ~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~-~~g~~~  157 (376)
T TIGR02318        79 HDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELI-DDPRVD  157 (376)
T ss_pred             HHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHh-cCCCcC
Confidence            89999999999999996322   11 2222    23222333333  77899999888765666788888887 789999


Q ss_pred             EEEEEecCCC--CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079          200 FKFFMAYKGS--FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR  277 (331)
Q Consensus       200 ik~~~~~~~~--~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~  277 (331)
                      +|.|++..+.  ...+.+.+.+.+..  +.|   .+|+|..+.....   ..+.+..             ..+.+.+.++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~---~~~~~~~-------------~~e~i~~~v~  216 (376)
T TIGR02318       158 LISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEER---IARRAEY-------------GLANRSEIAA  216 (376)
T ss_pred             EEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHH---HHHHhhc-------------cHHHHHHHHH
Confidence            9999875432  24556666555543  556   6688776554322   1222210             1467888899


Q ss_pred             HHHhcCCCEEEEeCC
Q 020079          278 LAEFVNTPLYVVHVM  292 (331)
Q Consensus       278 l~~~~g~~~~i~H~~  292 (331)
                      +++..|+++ .+|..
T Consensus       217 ~A~~~G~~v-~sH~~  230 (376)
T TIGR02318       217 LARARGIPL-ASHDD  230 (376)
T ss_pred             HHHHCCCeE-EEecC
Confidence            999999987 88873

This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.

>PRK13207 ureC urease subunit alpha; Reviewed

Probab=99.87  E-value=1e-20  Score=179.35  Aligned_cols=208  Identities=19%  Similarity=0.199  Sum_probs=146.4

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~  121 (331)
                      ..+++|+|++|+++.....++|.|+||||++|++....          .++.++||++|++|+|||||+|+|+..+  +.
T Consensus        66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P--~~  143 (568)
T PRK13207         66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP--QQ  143 (568)
T ss_pred             cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc--cH
Confidence            35799999999998667789999999999999974211          1356899999999999999999998765  21


Q ss_pred             CChhhHHHHHHHHHhCCceEEecCcCCCC----Cc----HHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079          122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN----GS----LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK  193 (331)
Q Consensus       122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (331)
                               .+.++++||||+++++....    ..    ....+....+.....++++.+....   ..+..++++++. 
T Consensus       144 ---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g---~~~~~~~L~e~i-  210 (568)
T PRK13207        144 ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLGKG---NASLPEALEEQI-  210 (568)
T ss_pred             ---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCceEEEEcCC---CcccHHHHHHHH-
Confidence                     46789999999999843221    11    1122333333333345555554321   223466777777 


Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT  273 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~  273 (331)
                      +.|+.+||++.++.    .+++.+.++++.|+++|+++.+|+....+....                            +
T Consensus       211 ~aGA~gfKi~~d~g----~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~----------------------------e  258 (568)
T PRK13207        211 EAGAIGLKLHEDWG----ATPAAIDNCLSVADEYDVQVAIHTDTLNESGFV----------------------------E  258 (568)
T ss_pred             HcCCCEEeecCCCC----CCHHHHHHHHHHHHHhCCEEEEeCCCcccchHH----------------------------H
Confidence            78999999886542    478999999999999999999999765433111                            1


Q ss_pred             HHHHHHHhcCCCEEEEeCCC---HHHHHHHHHHHHcCC
Q 020079          274 RAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGP  308 (331)
Q Consensus       274 ~~~~l~~~~g~~~~i~H~~~---~~~~~~i~~~~~~Gi  308 (331)
                       . .+....|..+|++|...   ...-+.++.+.+.|+
T Consensus       259 -~-t~~a~~g~~iH~~H~egaggghapdii~~~~~~~v  294 (568)
T PRK13207        259 -D-TIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNV  294 (568)
T ss_pred             -H-HHHhcCCCEEEEEeecCCCcCCchHHHHHhhcCCC
Confidence             1 34445678899999652   234467788887775

>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis

Probab=99.87  E-value=6.2e-21  Score=174.14  Aligned_cols=184  Identities=23%  Similarity=0.258  Sum_probs=132.2

Q ss_pred             CeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeecccccccc
Q 020079          101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT  178 (331)
Q Consensus       101 ~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~  178 (331)
                      .+|+||+||.|+|+..+  +..+.|++.++.++|+++||||+.||.+..+. ...+.++...+... .+.+++.++.+..
T Consensus         2 ~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~   79 (344)
T cd01316           2 TIRLPGLIDVHVHLREP--GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGAT   79 (344)
T ss_pred             eEEeCCeEEeeeccCCC--CcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeec
Confidence            47999999999999998  77889999999999999999999999765433 45566666555554 3688888886665


Q ss_pred             CCChhhHHHHHHHHHHhCCCeEEEEEecCCCC-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079          179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE  257 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~  257 (331)
                      ..+.+   ++.++. . ...++|.|+.+.... ..++.........+...+.++..|+|+.                   
T Consensus        80 ~~~~~---~~~~l~-~-~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~~-------------------  135 (344)
T cd01316          80 STNAA---TVGELA-S-EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQ-------------------  135 (344)
T ss_pred             CCCHH---HHHHHH-h-ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence            44332   333333 2 256788886432111 0122111222333344467777776542                   


Q ss_pred             cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                                   .+.+.+.+++..|.++|++|+|+.++++.++++|++|++|+++|||||+.+..
T Consensus       136 -------------~~~~~l~la~~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~  188 (344)
T cd01316         136 -------------TLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQ  188 (344)
T ss_pred             -------------HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccH
Confidence                         23446778888999999999999999999999999999999999999998764

Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.

>PRK13308 ureC urease subunit alpha; Reviewed

Probab=99.87  E-value=8.5e-21  Score=178.77  Aligned_cols=170  Identities=18%  Similarity=0.167  Sum_probs=126.2

Q ss_pred             CccEEEECcEEEeCC-CceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCC
Q 020079           52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF  118 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~-~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~  118 (331)
                      ..+++|+|++|+|+. +...++|.|+||+|++|++....            .++.++||++|++|+|||||+|+|+..+ 
T Consensus        67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~P-  145 (569)
T PRK13308         67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSA-  145 (569)
T ss_pred             cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCc-
Confidence            357999999999864 46788999999999999975321            1356899999999999999999999765 


Q ss_pred             CCCCChhhHHHHHHHHHhCCceEEecCcCCC--C--CcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079          119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI--N--GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE  194 (331)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (331)
                       +.         .+.++++||||+++++..+  +  ......++.+.+.....++++++.....   ....+++.++. +
T Consensus       146 -g~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~---~s~~aeL~eli-~  211 (569)
T PRK13308        146 -QL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGN---SSKPAALIEQV-E  211 (569)
T ss_pred             -cH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCc---ccCHHHHHHHH-H
Confidence             21         3778999999999864222  1  1334445554444444567776654321   12356777777 7


Q ss_pred             hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                      .|+.++|.+.+|    ..+++.+.++++.|+++|+++.+|++...+
T Consensus       212 aGA~GfKi~ed~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne  253 (569)
T PRK13308        212 AGACGLKIHEDW----GAMPAAIDTCLEVADEYDFQVQLHTDTLNE  253 (569)
T ss_pred             CCCCEEeecCCC----CCCHHHHHHHHHHHHhcCCEEEEeCCCcCc
Confidence            899999987554    247889999999999999999999976554

>PRK13206 ureC urease subunit alpha; Reviewed

Probab=99.87  E-value=1.5e-20  Score=177.83  Aligned_cols=207  Identities=17%  Similarity=0.182  Sum_probs=145.8

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|++..+...++|.|+||+|++|++....            .+..++||++|++|+|||||+|+|+..+  
T Consensus        70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~P--  147 (573)
T PRK13206         70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICP--  147 (573)
T ss_pred             CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCc--
Confidence            35799999999997777788999999999999974211            1346899999999999999999998765  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCCC----C----cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN----G----SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +     .    .+.++++||||+++++....    .    .....+..+.+.....++++.++...   +....+++.++
T Consensus       148 g-----~----~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g---~~~~~~~L~el  215 (573)
T PRK13206        148 Q-----I----VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNVALLGKG---NTVSAEALWEQ  215 (573)
T ss_pred             h-----H----HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCceeEEEecCc---CcCCHHHHHHH
Confidence            2     1    37789999999999743221    1    11112223333444466777766532   22224567777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA  271 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~  271 (331)
                      . +.|+.+||.+.+|    ..+++.+.++++.|+++|+++.+|+++..+...                            
T Consensus       216 ~-~aGA~GfKi~~d~----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~----------------------------  262 (573)
T PRK13206        216 L-RGGAGGFKLHEDW----GSTPAAIDACLRVADAAGVQVALHSDTLNEAGF----------------------------  262 (573)
T ss_pred             H-HCCCcEEeecCcc----CCCHHHHHHHHHHHHHhCCEEEEECCCccccch----------------------------
Confidence            7 7899999987544    368999999999999999999999987654311                            


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCH---HHHHHHHHHHHcC
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAG  307 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~~---~~~~~i~~~~~~G  307 (331)
                       .+. .++...|..+|++|....   ..-++++.+...+
T Consensus       263 -~E~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~~n  299 (573)
T PRK13206        263 -VED-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPN  299 (573)
T ss_pred             -hhH-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCCCC
Confidence             111 455567889999998642   2334555554433

>PRK09230 cytosine deaminase; Provisional

Probab=99.87  E-value=6e-20  Score=173.09  Aligned_cols=254  Identities=20%  Similarity=0.182  Sum_probs=151.3

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCCC----------
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS----------  121 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~----------  121 (331)
                      ..++|+|++++++..  ..+|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+.+.+...          
T Consensus         4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l   81 (426)
T PRK09230          4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTL   81 (426)
T ss_pred             ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCCCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCH
Confidence            468999999987542  468999999999999864322 3568999999999999999999998752211          


Q ss_pred             -------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCc--HHHH-HHHHHHHhccceeecc--ccccccC
Q 020079          122 -------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGS--LTAG-FEAYEKKAKNSCMDYG--FHMAITK  179 (331)
Q Consensus       122 -------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  179 (331)
                                   .++++++    ...+.++++|||+++++..+....  ..+. ++...+......+.+.  ...+...
T Consensus        82 ~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~~  161 (426)
T PRK09230         82 FEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILS  161 (426)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEEEeccCccccC
Confidence                         1223332    234557889999999887653221  1122 2222222211111111  1111111


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC--CHHHHHHHHHHHHHcCCcEEEEc-CCchhhH----HHHHHHHHcC
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHA-ENGDAVF----EGQKRMIELG  252 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~--~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~----~~~~~~~~~G  252 (331)
                      . +...+.+++.. +.+.+.+.  ..++.....  +++.++.+++.|+++|+++++|+ |...+..    ...+.+.+.|
T Consensus       162 ~-~~~~~~l~~a~-~~~~~~vg--~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~g  237 (426)
T PRK09230        162 Y-PNGEALLEEAL-RLGADVVG--AIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREG  237 (426)
T ss_pred             C-ccHHHHHHHHH-HcCCCEEe--CCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhC
Confidence            1 11223333333 33444332  233333333  57899999999999999999997 5444322    2235567777


Q ss_pred             CCCcccccccCChHH--HHHHHHHHHHHHHhcCCCEEEEeCCCH--------------HHHHHHHHHHHcCCCEEEecC
Q 020079          253 ITGPEGHALSRPPLL--EGEATTRAIRLAEFVNTPLYVVHVMSM--------------DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~--e~~~i~~~~~l~~~~g~~~~i~H~~~~--------------~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      + +++....+.....  +.....++++++++.|+.  ++||+..              .++..++++.++|++|+.+|.
T Consensus       238 l-~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~--vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~aGv~V~lGTD  313 (426)
T PRK09230        238 M-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN--FVANPLVNIHLQGRFDTYPKRRGITRVKEMLEAGINVCFGHD  313 (426)
T ss_pred             C-CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCe--EEECcchhhhhcCCCCCCCCCCCCcCHHHHHHCCCeEEEecC
Confidence            4 4443333222221  011234567788887876  5555432              334568999999999998887

>TIGR02022 hutF formiminoglutamate deiminase

Probab=99.87  E-value=5.6e-21  Score=181.76  Aligned_cols=249  Identities=14%  Similarity=0.051  Sum_probs=155.9

Q ss_pred             EEEECcEEEeCCC-ceeeeEEEe-CCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC------------
Q 020079           55 ILIKGGTVVNAHH-QQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~~-~~~~~v~i~-~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------------  120 (331)
                      +.++|+++  +++ .++++|+|+ ||+|++||+....++.   .+..|++|||||||+|+|+.+.+..            
T Consensus         4 ~~~~~~~~--~~~~~~~~~i~I~~~g~I~~vg~~~~~~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~   78 (455)
T TIGR02022         4 YWAERALL--PDGWAEGVRIAVAADGRILAIETGVPAAPG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDS   78 (455)
T ss_pred             hhHHhccC--CCccccCceEEEecCCEEEEecCCCCcccc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCCCC
Confidence            56677776  333 357899999 9999999986432222   3346899999999999999764211            


Q ss_pred             -------------CCChhhHHH----HHHHHHhCCceEEecCcCCCC-------C----cHHHHHHHHHHHhccceeecc
Q 020079          121 -------------SETIDDFFS----GQAAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       121 -------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~  172 (331)
                                   ..++++.+.    +..+++++||||+.|+.....       .    .....++...+.+.+..+...
T Consensus        79 l~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~  158 (455)
T TIGR02022        79 FWTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPV  158 (455)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhCCeEEeeee
Confidence                         112333332    234568899999999752211       0    123445556666555333211


Q ss_pred             cc--cc---ccC---------CChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-C
Q 020079          173 FH--MA---ITK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E  236 (331)
Q Consensus       173 ~~--~~---~~~---------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e  236 (331)
                      +.  ..   ...         ..++..+..+.+.+. .+...+...+.++.++.++++.++++++ ++++|+++++|+ |
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e  237 (455)
T TIGR02022       159 FYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAE  237 (455)
T ss_pred             eeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECC
Confidence            11  00   000         011122222333211 1223456667788888899999999999 889999999997 6


Q ss_pred             CchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHH
Q 020079          237 NGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKA  303 (331)
Q Consensus       237 ~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~  303 (331)
                      +..+.....        +++.+.|+++++....+.....     ++.++++++.|+.  ++||+.     ..++..++++
T Consensus       238 ~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~lg~g~~pi~~l  310 (455)
T TIGR02022       238 QQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLT-----DEETALLARSGAV--AGLCPTTEANLGDGIFPAVDF  310 (455)
T ss_pred             ChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCC-----HHHHHHHHHcCCe--EEEChhhhccccCCCCCHHHH
Confidence            766655443        4478889888765444433222     2356778888876  555553     2456789999


Q ss_pred             HHcCCCEEEecCC
Q 020079          304 RKAGPNFLNTTIP  316 (331)
Q Consensus       304 ~~~Gi~v~~~~~p  316 (331)
                      .++|++|+.+|.-
T Consensus       311 ~~~Gv~v~lGTD~  323 (455)
T TIGR02022       311 VAAGGRFGIGSDS  323 (455)
T ss_pred             HHCCCeEEEECCC
Confidence            9999999998873

In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.

>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.86  E-value=7.9e-21  Score=176.55  Aligned_cols=226  Identities=14%  Similarity=0.003  Sum_probs=146.1

Q ss_pred             CEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCCC-C-------------------CChhhHH----HH
Q 020079           78 GIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-S-------------------ETIDDFF----SG  130 (331)
Q Consensus        78 g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~-------------------~~~~~~~----~~  130 (331)
                      |+|++||+....   .++.+++|+.|++|+|||||+|+|+.+.... .                   .++++.+    .+
T Consensus         1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~   80 (381)
T cd01312           1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG   80 (381)
T ss_pred             CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            689999985321   1356899999999999999999999765321 1                   1122222    23


Q ss_pred             HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC-CChhhHHHHHHHHH--HhCCCeEEEEEecC
Q 020079          131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVK--EKGINSFKFFMAYK  207 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~ik~~~~~~  207 (331)
                      ..+++++||||+.|+...     .+..+...+.+.|..+.+.+...... ......+.++....  +.....++..++++
T Consensus        81 ~~E~l~~G~Tt~~d~~~~-----~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~  155 (381)
T cd01312          81 IRQMLESGTTSIGAISSD-----GSLLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPH  155 (381)
T ss_pred             HHHHHHhCCeEEEEecCC-----HHHHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCC
Confidence            345688999999998643     12455566666665444332211100 11111111112111  11234578888999


Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHH--------------------------HHHHHHcCCCCccccc
Q 020079          208 GSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEG--------------------------QKRMIELGITGPEGHA  260 (331)
Q Consensus       208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~--------------------------~~~~~~~G~~~~~~~~  260 (331)
                      .+..++++.++++.+.|+++|+++++|+ |+..+....                          .+++.+.|++++....
T Consensus       156 a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~  235 (381)
T cd01312         156 APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSF  235 (381)
T ss_pred             CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEE
Confidence            9999999999999999999999999996 777765533                          2457788888876544


Q ss_pred             ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       261 ~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .+.....     ++.++++++.|+.  ++||+..     .....++++.++|++|+.++.
T Consensus       236 ~H~~~l~-----~~~~~~l~~~g~~--v~~~P~sn~~lg~g~~p~~~~~~~Gv~v~lGtD  288 (381)
T cd01312         236 VHCVYAN-----LEEAEILASRGAS--IALCPRSNRLLNGGKLDVSELKKAGIPVSLGTD  288 (381)
T ss_pred             EECCcCC-----HHHHHHHHHcCCe--EEECcchhhhhcCCCcCHHHHHHCCCcEEEeCC
Confidence            4333222     2356777777765  6666642     244678999999999998875

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK14085 imidazolonepropionase; Provisional

Probab=99.86  E-value=6.3e-20  Score=171.10  Aligned_cols=245  Identities=18%  Similarity=0.120  Sum_probs=149.0

Q ss_pred             cEEEEC-cEEEeCCC---------ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC---
Q 020079           54 KILIKG-GTVVNAHH---------QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG---  120 (331)
Q Consensus        54 ~~~i~n-~~i~~~~~---------~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~---  120 (331)
                      +++|+| +.|++.+.         .++++|+|+||+|++|++....+.+.++||++|++|||||||+|+|+......   
T Consensus         2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~   81 (382)
T PRK14085          2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLVFAGDRSAE   81 (382)
T ss_pred             cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCCCCCeEEeCCCCEEecCeEecCcCccccCChhHH
Confidence            478999 59998652         35789999999999999864434456899999999999999999999653110   


Q ss_pred             -----------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHh---cc-cee
Q 020079          121 -----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA---KN-SCM  169 (331)
Q Consensus       121 -----------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~---~~-~~~  169 (331)
                                             ..++++.+.    ..+.++++||||++|+..... ...+.++..+..+   .. ...
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T PRK14085         82 FAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGL-TVEDEARSARIAAEFTDEVTFL  160 (382)
T ss_pred             HHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCC-CHHHHHHHHHHHHHhhhcceee
Confidence                                   112333332    345678999999999754322 2233333222211   11 111


Q ss_pred             ecccccc-ccCCChhhHHHH----HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079          170 DYGFHMA-ITKWDEVVSDEM----EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG  244 (331)
Q Consensus       170 ~~~~~~~-~~~~~~~~~~~~----~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~  244 (331)
                      ....... .....+...+.+    ...+ +...+.+|++.+.   ...+.++++++++.|+++|+++.+|+.+.... ..
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~-~~  235 (382)
T PRK14085        161 GAHVVPPEYAGDADEYVDLVCGPMLDAV-APHARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPG-PG  235 (382)
T ss_pred             ccccCCcccCCCHHHHHHHHHHHHHHHH-HHhCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCcccCC-hH
Confidence            1100000 011111222222    2333 3446677877653   24678999999999999999999998532111 12


Q ss_pred             HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       245 ~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .+.+.+.|..... |+...        .++.++++++.|+.  ++|++..     .....+++++++|++|..++.
T Consensus       236 v~~~~~~g~~~i~-H~~~l--------~~~~~~~la~~gv~--~~~~P~~~~~~~~~~~~~~~l~~aGv~v~lgsD  300 (382)
T PRK14085        236 VRLAVELGAASVD-HCTYL--------TDADVDALAGSGTV--ATLLPGAEFSTRQPYPDARRLLDAGVTVALASD  300 (382)
T ss_pred             HHHHHHcCCCcHH-HhCCC--------CHHHHHHHHHcCCE--EEECcHHHHhcCCCCchHHHHHHCCCcEEEEeC
Confidence            2344556765433 22111        13455677777764  5555532     235679999999999988765

>TIGR01178 ade adenine deaminase

Probab=99.86  E-value=7e-20  Score=176.38  Aligned_cols=238  Identities=18%  Similarity=0.236  Sum_probs=161.8

Q ss_pred             cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079           54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ  131 (331)
Q Consensus        54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~  131 (331)
                      +++|+|++|+++..  ...++|+|+||+|++|++..    +.++||++|++|+|||||+|+|+..+.   ..++++   .
T Consensus         1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~----~~~viDa~G~~v~PG~ID~H~Hi~~~~---~~~~~~---~   70 (552)
T TIGR01178         1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN----GVKVIDALGEYAVPGFIDAHIHIESSM---LTPSEF---A   70 (552)
T ss_pred             CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC----CCeEEECCCCEEEeCeEecccccCCCC---CChhHH---H
Confidence            47899999998653  45689999999999998742    358999999999999999999998762   245554   4


Q ss_pred             HHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhccceeecccccccc------CCChh--hHHHHHHHHHHhCCCeEEE
Q 020079          132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHMAIT------KWDEV--VSDEMEVMVKEKGINSFKF  202 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~g~~~ik~  202 (331)
                      +.++.+||||++++....+ ....+.++.+.+.....++++.+..+..      ..+..  ..++++++.++.|+.++|.
T Consensus        71 ~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke  150 (552)
T TIGR01178        71 KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAE  150 (552)
T ss_pred             HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEE
Confidence            5679999999998754322 2456677776666556666664443321      11111  3577888885569999999


Q ss_pred             EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhc
Q 020079          203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV  282 (331)
Q Consensus       203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~  282 (331)
                      ++++.+....+.+.++.+ +.+++.|..+.+|++...  ......+...|....+     .+...|      .+......
T Consensus       151 ~m~~~~v~~~d~~~l~~i-~~a~~~g~~I~gHap~l~--~~eL~~~~~aGi~~dH-----e~~s~~------ea~e~~~~  216 (552)
T TIGR01178       151 VMDYPGVINADIEMLNKI-NSARKRNKVIDGHCPGLS--GKLLNKYISAGISNDH-----ESTSIE------EAREKLRL  216 (552)
T ss_pred             EecchhhcCCCHHHHHHH-HHHHhCCCEEEecCCCCC--HHHHHHHHHcCCCCCc-----CcCCHH------HHHHHHHC
Confidence            998765434455555555 889999999999997543  2334556677765432     222222      22334466


Q ss_pred             CCCEEEEeCCCHHHHHHHHHHH--HcCCCEEEecC
Q 020079          283 NTPLYVVHVMSMDAMEEIAKAR--KAGPNFLNTTI  315 (331)
Q Consensus       283 g~~~~i~H~~~~~~~~~i~~~~--~~Gi~v~~~~~  315 (331)
                      |..+.+.|.+....++.+..+.  ..+.++..+|.
T Consensus       217 Gm~~~ir~gs~~~n~~~~~~~~~~~~~~~~~l~TD  251 (552)
T TIGR01178       217 GMKLMIREGSAAKNLEALHPLINEKNCRSLMLCTD  251 (552)
T ss_pred             CCEEEEeCCccccCHHHHHHHHhhcCCceEEEEeC
Confidence            8888888887655545444432  34567777766

The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.

>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide

Probab=99.86  E-value=4.9e-20  Score=173.58  Aligned_cols=193  Identities=18%  Similarity=0.202  Sum_probs=141.7

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|++......++|.|+||+|++|++....            .++.++||++|++|+|||||+|+|+..+  
T Consensus        64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P--  141 (567)
T cd00375          64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICP--  141 (567)
T ss_pred             cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCc--
Confidence            35799999999997766789999999999999975321            1246899999999999999999998765  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCC-------CC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +.         .+.++++||||+++++..+       +. .....++...+.....++++.+....   ..+..+++.++
T Consensus       142 ~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~g~~gkg---~~~~l~eL~e~  209 (567)
T cd00375         142 QQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIGFLGKG---NGSSPDALAEQ  209 (567)
T ss_pred             cH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCceEEEEecC---ccccHHHHHHH
Confidence            21         4678999999999973222       11 23355555555555556777665422   23445677777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA  271 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~  271 (331)
                      . +.|+.++|.+.+|    ..++..+.++++.|+++|.++.+|++...+...                            
T Consensus       210 ~-~aGA~GfK~~eD~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~----------------------------  256 (567)
T cd00375         210 I-EAGACGLKLHEDW----GATPAAIDTCLSVADEYDVQVAIHTDTLNESGF----------------------------  256 (567)
T ss_pred             H-HcCCEEEEecCCC----CCCHHHHHHHHHHHHhhCCEEEEECCCCCcchH----------------------------
Confidence            7 7899999977554    248899999999999999999999986554321                            


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCC
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMS  293 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~  293 (331)
                      ++ . .++...|..+|++|...
T Consensus       257 ~E-~-t~aa~~gr~iH~~H~eg  276 (567)
T cd00375         257 VE-D-TIAAIKGRTIHTYHTEG  276 (567)
T ss_pred             HH-H-HHHHhcCCeEEEEecCC
Confidence            11 1 45666789999999864

Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.

>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.86  E-value=1.7e-20  Score=176.73  Aligned_cols=235  Identities=15%  Similarity=0.037  Sum_probs=148.9

Q ss_pred             eeeeE-EEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC-------------------------C
Q 020079           69 QIADV-YVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------------------E  122 (331)
Q Consensus        69 ~~~~v-~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-------------------------~  122 (331)
                      ++++| +|+||+|++||+...    .++||++|++|+|||||+|+|+.+.....                         .
T Consensus         9 ~~~~i~~v~~g~I~~Vg~~~~----~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~~~~   84 (418)
T cd01313           9 RNVRIEVDADGRIAAVNPDTA----TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYRFAARL   84 (418)
T ss_pred             cCeEEEEeCCCeEEEecCCCC----CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHHHHHhC
Confidence            46899 999999999998542    25799999999999999999998752111                         1


Q ss_pred             ChhhHHH----HHHHHHhCCceEEecCcCCCCC-----------cHHHHHHHHHHHhccceeecccc--cc---cc-C--
Q 020079          123 TIDDFFS----GQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYGFH--MA---IT-K--  179 (331)
Q Consensus       123 ~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~---~~-~--  179 (331)
                      ++++++.    +..+++++||||++|+......           ......++..+.+.+..+...+.  .+   .. .  
T Consensus        85 t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~  164 (418)
T cd01313          85 TPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPAPNPG  164 (418)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCCCCchh
Confidence            2223322    2344688999999997532110           11334455555555533321111  00   00 0  


Q ss_pred             ------CChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH------
Q 020079          180 ------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ------  245 (331)
Q Consensus       180 ------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~------  245 (331)
                            ..++..+.+.++.+. .....+...+.++....++++.++++++.|++ |+++++|+ |+..+.....      
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~  243 (418)
T cd01313         165 QRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRR  243 (418)
T ss_pred             hhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCC
Confidence                  001222233332211 12234666777888888999999999999999 99999997 6665544332      


Q ss_pred             --HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecC
Q 020079          246 --KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       246 --~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                        +++.+.|.++++....+.....     ++.++++++.|+.  ++||+.     ...+..++++.++|++|+.++.
T Consensus       244 ~i~~l~~~g~l~~~~~~~H~~~l~-----~~~~~~la~~g~~--v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~lGtD  313 (418)
T cd01313         244 PVELLLDHGHLDARWCLVHATHLT-----DNETLLLGRSGAV--VGLCPTTEANLGDGIFPAAALLAAGGRIGIGSD  313 (418)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCC-----HHHHHHHHHcCCE--EEECCCchhhccCCCCCHHHHHHCCCcEEEecC
Confidence              4567788888764444433222     2346777877875  566654     2456689999999999998886

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK09356 imidazolonepropionase; Validated

Probab=99.85  E-value=1.4e-19  Score=170.41  Aligned_cols=250  Identities=21%  Similarity=0.155  Sum_probs=144.5

Q ss_pred             CCccEEEECcEEEeCCC--------ceeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCCC
Q 020079           51 SSSKILIKGGTVVNAHH--------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG  120 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--------~~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~~  120 (331)
                      ||.+++|+|++|++++.        .++++|+|+||||++||+..+.+  .+.++||++|++|||||||+|+|+.++...
T Consensus         1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~   80 (406)
T PRK09356          1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR   80 (406)
T ss_pred             CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccccccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence            45779999999998653        34789999999999999865332  235899999999999999999999764210


Q ss_pred             C-------------------------------CChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHH
Q 020079          121 S-------------------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK  163 (331)
Q Consensus       121 ~-------------------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~  163 (331)
                      .                               .++++.+    .....++++||||+.++......  ...+.++..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~  160 (406)
T PRK09356         81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVARRL  160 (406)
T ss_pred             HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHHHH
Confidence            0                               0112221    22345688999999986432211  111223333333


Q ss_pred             hccceeecc--cc---c-c--ccCCChhhHHH----HHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCc
Q 020079          164 AKNSCMDYG--FH---M-A--ITKWDEVVSDE----MEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL  230 (331)
Q Consensus       164 ~~~~~~~~~--~~---~-~--~~~~~~~~~~~----~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~  230 (331)
                      +.+..+...  +.   . +  .....++..+.    +.+.... .+...++.+..   ...++++.++++++.|+++|++
T Consensus       161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~~~~A~~~g~~  237 (406)
T PRK09356        161 GEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCE---TGAFSVEQSERVLEAAKALGLP  237 (406)
T ss_pred             hhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEec---CCCCCHHHHHHHHHHHHHCCCC
Confidence            322211110  00   0 0  00111111222    2221111 23555554322   3356899999999999999999


Q ss_pred             EEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHH
Q 020079          231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKAR  304 (331)
Q Consensus       231 v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~  304 (331)
                      +++|+....... ..+...+.|..... |+...        -++.+++.++.|+.  ++||+.      ......++++.
T Consensus       238 v~~H~~~~~~~~-~~~~~~~~~~~~~~-H~~~~--------~~~~~~~la~~g~~--~~~~P~~~~~l~~~~~~~~~~l~  305 (406)
T PRK09356        238 VKIHAEQLSNLG-GAELAAEYGALSAD-HLEYL--------DEAGIAAMAEAGTV--AVLLPGAFYFLRETQYPPARLLR  305 (406)
T ss_pred             EEEEEecccCCC-HHHHHHHcCCcEeh-HhhcC--------CHHHHHHHHHhCCE--EEECccchhhcCcccCchHHHHH
Confidence            999974221111 11223344543322 22111        12345666777775  445543      23467789999


Q ss_pred             HcCCCEEEecC
Q 020079          305 KAGPNFLNTTI  315 (331)
Q Consensus       305 ~~Gi~v~~~~~  315 (331)
                      ++|++++.++.
T Consensus       306 ~~Gi~v~lgtD  316 (406)
T PRK09356        306 DAGVPVALATD  316 (406)
T ss_pred             HCCCeEEEeCC
Confidence            99999998775

>PRK13985 ureB urease subunit beta; Provisional

Probab=99.85  E-value=1.1e-19  Score=170.70  Aligned_cols=206  Identities=17%  Similarity=0.199  Sum_probs=142.7

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|++..+...++|.|+||+|++|++....            .++.++||++|++|+|||||+|+|+..+  
T Consensus        64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P--  141 (568)
T PRK13985         64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP--  141 (568)
T ss_pred             cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCc--
Confidence            45799999999997667788999999999999985321            1356899999999999999999998765  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +     .    .+.++++||||+++++...     +.   .....++...+.....++++.++...   .....+++.++
T Consensus       142 ~-----~----~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG---~~~~l~eL~el  209 (568)
T PRK13985        142 Q-----Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLGKG---NSSNDASLADQ  209 (568)
T ss_pred             c-----H----HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCccEEEecCC---ccCCHHHHHHH
Confidence            2     1    2458999999999853221     11   11222344444444445666665422   12335677777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA  271 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~  271 (331)
                      . +.|+.++|.+..+    ..++..+.++++.|++++.++.+|+++..+....                           
T Consensus       210 ~-~aGA~GfK~~ed~----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~---------------------------  257 (568)
T PRK13985        210 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCV---------------------------  257 (568)
T ss_pred             H-HcCCEEEEECCcc----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhh---------------------------
Confidence            7 7899889865433    3678999999999999999999999776543211                           


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCH---HHHHHHHHHHHc
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKA  306 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~~---~~~~~i~~~~~~  306 (331)
                       + . .++...|..+|++|....   ..-++++.+...
T Consensus       258 -E-~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~  292 (568)
T PRK13985        258 -E-D-TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEH  292 (568)
T ss_pred             -H-H-HHHHhcCCeEEEEeccCCCccchhhHHHHcCCC
Confidence             1 1 345557889999998642   333445554433

>TIGR01792 urease_alph urease, alpha subunit

Probab=99.85  E-value=1.1e-19  Score=172.77  Aligned_cols=175  Identities=18%  Similarity=0.195  Sum_probs=123.6

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~  121 (331)
                      .++++|+|++|++......++|.|+||||++|++....          .++.++||++|++|+|||||+|+|+..+    
T Consensus        65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P----  140 (567)
T TIGR01792        65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISP----  140 (567)
T ss_pred             cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCc----
Confidence            35799999999997666789999999999999975321          1246899999999999999999998654    


Q ss_pred             CChhhHHHHHHHHHhCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079          122 ETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK  193 (331)
Q Consensus       122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (331)
                         +    ..+.++.+||||+++++...     +.   ...-......+......+++.+....   ..+..+++.++. 
T Consensus       141 ---~----~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g---~~~~~~~L~e~i-  209 (567)
T TIGR01792       141 ---Q----QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPINFGFTGKG---SGSGPAALIEQI-  209 (567)
T ss_pred             ---c----HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCccEEEEeCC---ccchHHHHHHHH-
Confidence               1    15778999999999965311     01   11111122223333345555544211   122345666666 


Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh---hHHHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQ  245 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~---~~~~~  245 (331)
                      +.|+.++|.+    ..+.++++.+.++++.|+++|+++++|+|+..+   ++...
T Consensus       210 ~aGa~gfK~h----~~y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~g~ve~t~  260 (567)
T TIGR01792       210 EAGACGLKVH----EDWGATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTI  260 (567)
T ss_pred             HcCCcEEEeC----CCCCCCHHHHHHHHHHHHHcCCEEEEeCCCcccchHHHHHH
Confidence            5788777754    345689999999999999999999999988777   55443

This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.

>PRK09237 dihydroorotase; Provisional

Probab=99.85  E-value=1.5e-19  Score=168.62  Aligned_cols=252  Identities=21%  Similarity=0.162  Sum_probs=145.2

Q ss_pred             EEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        55 ~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      ++|+|++|+++..  ....+|+|+||||++|++....+++.++||++|++|+|||||+|+|+..+  +... +.  ...+
T Consensus         1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~iD~~g~~v~PG~iD~H~H~~~~--~~~~-~~--~~~~   75 (380)
T PRK09237          1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPG--STPY-GD--EPDE   75 (380)
T ss_pred             CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEEeeecCCCC--CCcc-CC--CHHH
Confidence            3789999998764  45689999999999998864433356899999999999999999999864  2111 11  3456


Q ss_pred             HHHhCCceEEecCcCCCCCcHHHHHHHHHHH-hc--cceeeccccccccC-C----ChhhHHHHHHHHHH--hCCCeEEE
Q 020079          133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AK--NSCMDYGFHMAITK-W----DEVVSDEMEVMVKE--KGINSFKF  202 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~--~g~~~ik~  202 (331)
                      .++.+||||++|+......+.....+...+. +.  ..++++...+.... .    .....++++++.++  .++.++|.
T Consensus        76 ~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~  155 (380)
T PRK09237         76 VGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKA  155 (380)
T ss_pred             HHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEE
Confidence            7899999999998754443333333333322 22  23334433322211 1    11234566666643  46788998


Q ss_pred             EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch-hhHHHHHHHHHcCCCCccccccc-CC--hHHHHHHHHHHHHH
Q 020079          203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALS-RP--PLLEGEATTRAIRL  278 (331)
Q Consensus       203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~G~~~~~~~~~~-~~--~~~e~~~i~~~~~l  278 (331)
                      ++.+........+.++.....+++.|+++.+|+++.. ...+... +.+.|.  .-.|+.. .+  ...+.....+.+..
T Consensus       156 ~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~-~l~~g~--~~~H~~~~~~~~~~~~~~~~~~~a~~  232 (380)
T PRK09237        156 RMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILE-LLRPGD--ILTHCFNGKPNRILDEDGELRPSVLE  232 (380)
T ss_pred             EEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHh-hccCCC--EEEecCCCCCCCccCCCCcchHHHHH
Confidence            8875421111113444555556689999999986543 2333322 223331  1122221 11  11111112223344


Q ss_pred             HHhcCCCEEEEeCCCHHHHHHHHHHHHcCC-CEEEec
Q 020079          279 AEFVNTPLYVVHVMSMDAMEEIAKARKAGP-NFLNTT  314 (331)
Q Consensus       279 ~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi-~v~~~~  314 (331)
                      +.+.|..+.+.|.+....++.++++.++|+ +.+.++
T Consensus       233 ~l~~G~~~~ig~g~~~~~~~~~~~l~~~g~~~~~l~t  269 (380)
T PRK09237        233 ALERGVRLDVGHGTASFSFKVAEAAIAAGILPDTIST  269 (380)
T ss_pred             HHHCCEEEEecCCCCcccHHHHHHHHHCCCCceEEEC
Confidence            445687777777653344455666777885 444444

>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA

Probab=99.84  E-value=4e-19  Score=164.60  Aligned_cols=250  Identities=17%  Similarity=0.118  Sum_probs=155.4

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC----CCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFS  129 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~  129 (331)
                      ++|+|++|++++.....+|+|+||||++|++..+.+    ....++|++|++|+|||||+|+|+..... +.......+.
T Consensus         2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~   81 (389)
T TIGR01975         2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL   81 (389)
T ss_pred             EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence            689999999987667789999999999999875432    22335566999999999999999876311 1110112223


Q ss_pred             HHHHHHhCCceEEecCcCCCCC-----cHHHHHHHHHHHhccceeeccc-cccccCCChhhHHHHHHHHHHhCCCeEE-E
Q 020079          130 GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYGF-HMAITKWDEVVSDEMEVMVKEKGINSFK-F  202 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ik-~  202 (331)
                      ....++++||||++|+......     ...+..+.+.+.+.+....... ..+....+....+++..   ...+-++| +
T Consensus        82 ~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~---~d~iiG~~~i  158 (389)
T TIGR01975        82 TLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL---IDKVIGVGEI  158 (389)
T ss_pred             HHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee---ehhhcccceE
Confidence            5777899999999998643221     2334555555555554333222 12222223333333321   12344564 6


Q ss_pred             EEecCCCCcCCHHHHHHHHHHHHHcC----Cc--EEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHH
Q 020079          203 FMAYKGSFMINDELLIEGFKRCKSLG----AL--AMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA  275 (331)
Q Consensus       203 ~~~~~~~~~~~~~~l~~~~~~A~~~g----~~--v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~  275 (331)
                      -++.+.....+.++|+++.+.|+..|    ++  +++|. ..+...+...+.+++..+.....++-+....  ..-.++.
T Consensus       159 a~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~di~~~~f~pth~~r~--~~l~~~~  236 (389)
T TIGR01975       159 AISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENTDVPITQFLPTHINRN--VPLFEAG  236 (389)
T ss_pred             EEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhcCCChhheecCccCCC--HHHHHHH
Confidence            77888778889999999999999999    99  99997 4555566666666665555443333221111  1233455


Q ss_pred             HHHHHhcCCCEEEEeCCC--------HHHHHHHHHHHHcCCCE
Q 020079          276 IRLAEFVNTPLYVVHVMS--------MDAMEEIAKARKAGPNF  310 (331)
Q Consensus       276 ~~l~~~~g~~~~i~H~~~--------~~~~~~i~~~~~~Gi~v  310 (331)
                      ++.+++.| .+.+.-..+        -...+.+++++++|+++
T Consensus       237 i~~~~~gg-~iDv~~~~~~~~l~~~~~~~~~~~~~~~~~Gv~~  278 (389)
T TIGR01975       237 LEFAKKGG-TIDLTSSIDPQFRKEGEVAPAEGIKKALEAGVPL  278 (389)
T ss_pred             HHHHHhCC-cEEEeCCCCccchhccccChHHHHHHHHHcCCCc
Confidence            56666544 343431111        12234689999999974

The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.

>PRK09229 N-formimino-L-glutamate deiminase; Validated

Probab=99.84  E-value=5.6e-20  Score=175.19  Aligned_cols=249  Identities=12%  Similarity=0.030  Sum_probs=154.2

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeC-CEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-C-----------
Q 020079           54 KILIKGGTVVNAHHQQIADVYVED-GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-----------  120 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~-g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~-----------  120 (331)
                      .++++++.+.++ ..++++|+|+| |+|++||+... ++   .++.+|++|||||||+|+|+.+.+. |           
T Consensus         4 ~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~-~~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~~   78 (456)
T PRK09229          4 TLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAA-PA---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQDS   78 (456)
T ss_pred             hHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCC-Cc---cccccCcEEccCcccccccHhhHhhcCcccccCCCCCC
Confidence            355666666333 24678999999 99999998543 22   2456899999999999999874421 0           


Q ss_pred             -------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC-----------cHHHHHHHHHHHhccceeecc
Q 020079          121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       121 -------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  172 (331)
                                   ..++++.+    .+...++++||||+.|+......           .....++...+.+.|..+...
T Consensus        79 l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~~~~~  158 (456)
T PRK09229         79 FWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLLPV  158 (456)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEEecee
Confidence                         01222222    23345688999999987532110           113445555565555333211


Q ss_pred             cc--c-----ccc-------CCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-C
Q 020079          173 FH--M-----AIT-------KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E  236 (331)
Q Consensus       173 ~~--~-----~~~-------~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e  236 (331)
                      ..  .     +..       ...++..+..+++.+. .+...+++.+.+++...++++.++++++.| ++|+++++|+ |
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e  237 (456)
T PRK09229        159 LYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA-APDGPVHIHIAE  237 (456)
T ss_pred             eeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh-cCCCceEEEeCC
Confidence            10  0     000       0111122233333322 223457777888888899999999999999 9999999997 6


Q ss_pred             CchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHH
Q 020079          237 NGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKA  303 (331)
Q Consensus       237 ~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~  303 (331)
                      +..+.....        +.+.+.|.++++....+.....     ++.++++++.|+.  ++||+.     ..++..++++
T Consensus       238 ~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~lg~g~~p~~~l  310 (456)
T PRK09229        238 QTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLT-----DAETARLARSGAV--AGLCPTTEANLGDGIFPAVDY  310 (456)
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCC-----HHHHHHHHHcCCe--EEECchhhhhhcCCCCCHHHH
Confidence            666555443        3466778887764333332221     2346777787875  555553     2355678999


Q ss_pred             HHcCCCEEEecC
Q 020079          304 RKAGPNFLNTTI  315 (331)
Q Consensus       304 ~~~Gi~v~~~~~  315 (331)
                      .++|++|+.++.
T Consensus       311 ~~~Gv~v~lGtD  322 (456)
T PRK09229        311 LAAGGRFGIGSD  322 (456)
T ss_pred             HHCCCeEEEecC
Confidence            999999998886

>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.84  E-value=2.5e-19  Score=164.43  Aligned_cols=236  Identities=18%  Similarity=0.092  Sum_probs=140.8

Q ss_pred             eEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC
Q 020079           72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING  151 (331)
Q Consensus        72 ~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~  151 (331)
                      +|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+  +....+   ...+.++++||||++|+......
T Consensus         1 ~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~---~~~~~a~~~GvTtvvd~~~~~~~   75 (338)
T cd01307           1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHVYQG--GTRYGD---RPDMIGVKSGVTTVVDAGSAGAD   75 (338)
T ss_pred             CEEEECCEEEEccCCCCCCCCCeEEECCCCEEecCeEEeeecCCCC--CcccCC---CHhHHHHcCceeEEEeCCCCCCC
Confidence            5899999999999864433346899999999999999999999887  433333   25777899999999999865544


Q ss_pred             cHHHHHHHHHHHh-c--cceeeccccccccC--CC---hhhHHHHHHHHHH--hCCCeEEEEEecCCCCcCCHHHHHHHH
Q 020079          152 SLTAGFEAYEKKA-K--NSCMDYGFHMAITK--WD---EVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGF  221 (331)
Q Consensus       152 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~  221 (331)
                      ......+...+.. .  ....++.+++....  .+   ....+.+.+...+  .|+.++|.++..+.........++..+
T Consensus        76 ~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~~~  155 (338)
T cd01307          76 NIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAK  155 (338)
T ss_pred             CHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHHHH
Confidence            4333344443232 2  24555554433211  11   1123344444422  577889998876543333444588999


Q ss_pred             HHHHHcCCcEEEEcCCc-hhhHHHHHHHHHcCCCCcccccccCC--hHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHH
Q 020079          222 KRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRP--PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAME  298 (331)
Q Consensus       222 ~~A~~~g~~v~~H~e~~-~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~  298 (331)
                      +.|++.|+|+.+|+++. ....+... +.+.|. ...+.....+  ...+...+.+.+..+.+.|..+.+.|........
T Consensus       156 ~~a~~~~~pi~vH~~~~~~~~~~~~~-~l~~g~-~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~~~~~~  233 (338)
T cd01307         156 KIAKEADLPLMVHIGSPPPILDEVVP-LLRRGD-VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTASFSFR  233 (338)
T ss_pred             HHHHHcCCCEEEEeCCCCCCHHHHHH-HhcCCC-EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCCchhHH
Confidence            99999999999998553 33333332 333442 1111111111  1111111223445555667776666543233345


Q ss_pred             HHHHHHHcCC-CEEEec
Q 020079          299 EIAKARKAGP-NFLNTT  314 (331)
Q Consensus       299 ~i~~~~~~Gi-~v~~~~  314 (331)
                      .++++++.|+ +.+..+
T Consensus       234 ~~~~l~~~G~~~~~lst  250 (338)
T cd01307         234 VARAAIAAGLLPDTISS  250 (338)
T ss_pred             HHHHHHHCCCCCeeecC
Confidence            5677888886 444433

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK06846 putative deaminase; Validated

Probab=99.84  E-value=5.2e-19  Score=166.43  Aligned_cols=256  Identities=13%  Similarity=0.018  Sum_probs=153.1

Q ss_pred             EEEECcEEEeCC----------CceeeeEEEeCCEEEEeeCCCCC-CCCceEEeCCCCeeecccccccccccCCCCCCCC
Q 020079           55 ILIKGGTVVNAH----------HQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET  123 (331)
Q Consensus        55 ~~i~n~~i~~~~----------~~~~~~v~i~~g~I~~ig~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~  123 (331)
                      +.|+|+++....          ....++|.|+||+|++|++.... +.+.++||++|++|+|||||+|+|+.+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~   85 (410)
T PRK06846          6 YWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYGGPW   85 (410)
T ss_pred             eEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCCCCCCCceEeCCCCEEecCEEeeeecccchhhccch
Confidence            567776654322          23467999999999999986322 2246899999999999999999999875311110


Q ss_pred             --------------------h---hhH----HHHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccceeecc
Q 020079          124 --------------------I---DDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       124 --------------------~---~~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  172 (331)
                                          +   +..    .......+++|+|+++++....+.    ......+...+..........
T Consensus        86 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~~v~~~~~  165 (410)
T PRK06846         86 KACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKDGFTYEIV  165 (410)
T ss_pred             hhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhCcceEEEE
Confidence                                0   001    122344567899999887653332    111111222221111111111


Q ss_pred             ccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhh----HHHHHH
Q 020079          173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV----FEGQKR  247 (331)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~----~~~~~~  247 (331)
                      .............+.+++.. +.|++.++. +.+......+++.++++++.|+++|+++++|+ +...+.    +...++
T Consensus       166 a~~~~g~~~~~~~~lL~~al-~~Ga~~i~g-l~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~  243 (410)
T PRK06846        166 AFPQHGLLRSNSEPLMREAM-KMGAHLVGG-VDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVET  243 (410)
T ss_pred             eccCcccCCccHHHHHHHHH-HcCCCEEeC-CCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHH
Confidence            11100000022234566666 678776653 24444456778999999999999999999996 433222    223456


Q ss_pred             HHHcCCCCcccccccCChH--HHHHHHHHHHHHHHhcCCCEEEEeC-CCHHHHHHHHHHHHcCCCEEEecC
Q 020079          248 MIELGITGPEGHALSRPPL--LEGEATTRAIRLAEFVNTPLYVVHV-MSMDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       248 ~~~~G~~~~~~~~~~~~~~--~e~~~i~~~~~l~~~~g~~~~i~H~-~~~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+.|+.+ .....+....  .....+++.++++++.|+.+  +|+ ....++..+++++++|++|+.++.
T Consensus       244 ~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v--~~~~~~~~g~~p~~~l~~~Gv~v~lGtD  311 (410)
T PRK06846        244 TEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGISI--TSTVPIGRLHMPIPLLHDKGVKVSLGTD  311 (410)
T ss_pred             HHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeE--EEeCCCCCCCCCHHHHHhCCCeEEEecC
Confidence            77788776 4333332211  11234566677888888764  453 234567889999999999998775

>PRK10657 isoaspartyl dipeptidase; Provisional

Probab=99.84  E-value=9.3e-19  Score=163.80  Aligned_cols=255  Identities=16%  Similarity=0.140  Sum_probs=148.3

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC---CCceEEeCCCCeeecccccccccccCCCCC-CCChhhHHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSG  130 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~~~~~~~~~~  130 (331)
                      ++|+|++|++++...+++|+|+||+|++|++..+.+   +..++||++|++|+|||||+|+|+...... .....+....
T Consensus         3 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~~   82 (388)
T PRK10657          3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEVQ   82 (388)
T ss_pred             EEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHHH
Confidence            789999999887666789999999999998753221   246899999999999999999998742100 0111233456


Q ss_pred             HHHHHhCCceEEecCcCCCCC-cHHHH----HHHHHHHhccceeecccc-ccccCCChhhHHHHHHHHHHhCCCeE-EEE
Q 020079          131 QAAALAGGTTMHIDFVIPING-SLTAG----FEAYEKKAKNSCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSF-KFF  203 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~i-k~~  203 (331)
                      .+.++++||||++|+...... ...+.    .+...+.+-+......++ .+.....+...+++ ...+  ...++ +..
T Consensus        83 ~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~g~~~  159 (388)
T PRK10657         83 LSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSYHVPVRTITGSIRKDI-VLID--KVIGVGEIA  159 (388)
T ss_pred             HHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhhce-ehhh--hhhCcceee
Confidence            788899999999998733221 11222    222222233322111111 11100111111111 1111  11123 444


Q ss_pred             EecCCCCcCCHHHHHHHHHHHHHcCC------cEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHH
Q 020079          204 MAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI  276 (331)
Q Consensus       204 ~~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~  276 (331)
                      ..++.....++++++++.+.++..+.      ++++|+ ++....+...+++.+.|+.....+..+.....  ...++..
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~--~~~~~~~  237 (388)
T PRK10657        160 ISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQFLPTHVNRNE--PLFEQAL  237 (388)
T ss_pred             eccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcceeeCcccCCCH--HHHHHHH
Confidence            45565566789999998888876554      899996 45555554445667889876654333322111  1123344


Q ss_pred             HHHHhcCCCEEEEe-CCC---H---HHHHHHHHHHHcCC---CEEEecC
Q 020079          277 RLAEFVNTPLYVVH-VMS---M---DAMEEIAKARKAGP---NFLNTTI  315 (331)
Q Consensus       277 ~l~~~~g~~~~i~H-~~~---~---~~~~~i~~~~~~Gi---~v~~~~~  315 (331)
                      ++++ .|.-+.+.| ++.   .   ..++.+.++.+.|+   ++..++.
T Consensus       238 ~~~~-~G~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD  285 (388)
T PRK10657        238 EFAK-KGGVIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSD  285 (388)
T ss_pred             HHHH-cCCeEEEecCCCcccccCccCHHHHHHHHHHcCCChhheEEECC
Confidence            4444 355554553 221   1   44577888999998   6766554

>PRK13309 ureC urease subunit alpha; Reviewed

Probab=99.83  E-value=4.1e-19  Score=168.92  Aligned_cols=170  Identities=18%  Similarity=0.188  Sum_probs=123.3

Q ss_pred             CccEEEECcEEEeCC-CceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCC
Q 020079           52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF  118 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~-~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~  118 (331)
                      ..+++|+|++|+|+. +...++|.|+||+|++|++....            .++.++||++|++|+|||||+|+|+..+ 
T Consensus        67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P-  145 (572)
T PRK13309         67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISP-  145 (572)
T ss_pred             cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCc-
Confidence            357999999999963 56788999999999999975321            1136899999999999999999998766 


Q ss_pred             CCCCChhhHHHHHHHHHhCCceEEecCcCCC----C----CcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHH
Q 020079          119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI----N----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV  190 (331)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (331)
                       +.         .+.++.+||||+++++...    +    ......++.+.+.....++++.+....   ......++.+
T Consensus       146 -~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~g~~gkg---~~~~~~~l~e  212 (572)
T PRK13309        146 -QQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNVGILGKG---NSYGRGPLLE  212 (572)
T ss_pred             -ch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCEEEEcCC---CCCCHHHHHH
Confidence             21         3578999999999753211    1    122344555555554556676665422   1122356666


Q ss_pred             HHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                      +. +.|+.++|.+.++.    .+++.+.++++.|+++|.++.+|++...+
T Consensus       213 l~-~aGa~gfk~~~d~g----~t~~~L~~aLe~A~~~gv~VaiH~d~lnE  257 (572)
T PRK13309        213 QA-IAGVAGYKVHEDWG----ATAAALRHALRVADEVDIQVAVHTDSLNE  257 (572)
T ss_pred             HH-hcCcEEEEecCcCC----cCHHHHHHHHHHHHhcCCEEEEeCCcccc
Confidence            66 78999998765442    48899999999999999999999866544

>PLN02303 urease

Probab=99.82  E-value=1.7e-18  Score=168.54  Aligned_cols=186  Identities=16%  Similarity=0.225  Sum_probs=132.6

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC---C---------CCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---G---------DDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~---~---------~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|+|..+...++|+|+||+|++|++....   .         ++.++||++|++|+|||||+|+|+..+  
T Consensus       333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~P--  410 (837)
T PLN02303        333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICP--  410 (837)
T ss_pred             cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCC--
Confidence            35799999999996667788999999999999974211   1         136899999999999999999999765  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +.         .+.++++||||+++++...     +.   .....++...+.....++++++....   .....+++.++
T Consensus       411 g~---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pvn~Gf~gkG---~~s~l~eL~el  478 (837)
T PLN02303        411 QL---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPLNFGFTGKG---NTAKPEGLHEI  478 (837)
T ss_pred             cH---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCCcEEEEccC---cccCHHHHHHH
Confidence            21         2455666777666653211     11   13455666666555566777765422   12345667777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh---hHHHH--------HHHHHcCCCCc
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQ--------KRMIELGITGP  256 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~---~~~~~--------~~~~~~G~~~~  256 (331)
                      . +.|+.++|.+.    .+..+++.+.++++.|+++|+++++|+|+..+   ++...        .++...|+.+-
T Consensus       479 i-eaGa~GfK~h~----d~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~gg  549 (837)
T PLN02303        479 I-KAGAMGLKLHE----DWGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGGG  549 (837)
T ss_pred             H-HcCcEEEEECC----CCCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCCC
Confidence            6 67998888653    33567899999999999999999999988655   44333        44777787663

>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]

Probab=99.82  E-value=1.1e-18  Score=163.02  Aligned_cols=243  Identities=18%  Similarity=0.244  Sum_probs=167.4

Q ss_pred             CCCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEe-eCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhh
Q 020079           50 QSSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD  126 (331)
Q Consensus        50 ~~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~i-g~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~  126 (331)
                      .+.++++++|+++++.-.  +..++|+|.+|+|+.| ++..  .++.++||+.|+++.|||||.|+|+..+   ..+|..
T Consensus        21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--~e~~~~iDa~g~yivPGfID~H~HIESS---m~tP~~   95 (584)
T COG1001          21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--AEATEVIDAAGRYIVPGFIDAHLHIESS---MLTPSE   95 (584)
T ss_pred             CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--cccceeecCCCCEeccceeecceecccc---ccCHHH
Confidence            345789999999998653  5688999999999995 4432  3567999999999999999999999875   467788


Q ss_pred             HHHHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCC----C----hhhHHHHHHHHHHhCC
Q 020079          127 FFSGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW----D----EVVSDEMEVMVKEKGI  197 (331)
Q Consensus       127 ~~~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~g~  197 (331)
                      |   ++..+..||||++ |.+...+....++++.+.+.....++++++..+....    +    .-..+.++++.+...+
T Consensus        96 F---A~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~V  172 (584)
T COG1001          96 F---ARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEV  172 (584)
T ss_pred             H---HHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCc
Confidence            7   7788999999987 6666555566777777777777777777665433211    1    1135677788856677


Q ss_pred             CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079          198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR  277 (331)
Q Consensus       198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~  277 (331)
                      -++..+|++.+...-+ +.+...++.++++|+++..|+......  ....|...|+...+-     ....| ++++    
T Consensus       173 igl~E~Mn~pgVi~~D-~~~l~kl~a~~~~~k~VdGHapgl~g~--~Ln~Y~aaGi~tDHE-----~~t~E-Ea~~----  239 (584)
T COG1001         173 IGLGEMMNFPGVIEGD-PDMLAKLEAARKAGKPVDGHAPGLSGK--ELNAYIAAGISTDHE-----STTAE-EALE----  239 (584)
T ss_pred             cchhhhcCCchhccCC-HHHHHHHHHHHHcCCeecccCCCCChH--HHHHHHhcCCCcCcc-----cCCHH-HHHH----
Confidence            7888888887665544 555577788999999999998765533  234566677755431     11112 2222    


Q ss_pred             HHHhcCCCEEEEeCCCHHHHH-HHHHHHHcCC-CEEEec
Q 020079          278 LAEFVNTPLYVVHVMSMDAME-EIAKARKAGP-NFLNTT  314 (331)
Q Consensus       278 l~~~~g~~~~i~H~~~~~~~~-~i~~~~~~Gi-~v~~~~  314 (331)
                      .. +.|..+.+-+.|.+..++ +++...++|. ++..+|
T Consensus       240 kl-r~Gm~i~iReGS~a~dl~~l~~~i~e~~~~~~~lcT  277 (584)
T COG1001         240 KL-RLGMKIMIREGSAAKDLAALLPAITELGSRRVMLCT  277 (584)
T ss_pred             HH-hCCcEEEEEcCchhhhHHHHHHHHhhcCCceEEEEC
Confidence            11 346667777776665554 4555566664 344333

>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis

Probab=99.81  E-value=6.9e-19  Score=161.23  Aligned_cols=190  Identities=18%  Similarity=0.115  Sum_probs=131.0

Q ss_pred             eecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHH-HHhccc-eeeccccccccC
Q 020079          103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYE-KKAKNS-CMDYGFHMAITK  179 (331)
Q Consensus       103 v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~  179 (331)
                      -+||+||.|+|+..+       +++..+.+++.++| |+++||....+. ...+.+.... +..... +.++.++.....
T Consensus         2 ~~Pg~iD~h~h~~~~-------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   73 (335)
T cd01294           2 TIPRPDDMHLHLRDG-------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL   73 (335)
T ss_pred             cCCCcceeEecCCCc-------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence            379999999999753       88889999999999 999999765433 2333333332 222333 344443333211


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      ......++++++.+..|+.++|+|+...    .....+.+.+..+++.+++.|+++.+|+|+.......           
T Consensus        74 ~~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~-----------  142 (335)
T cd01294          74 TENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDV-----------  142 (335)
T ss_pred             cCCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccccc-----------
Confidence            1122346777776334999999986421    1111256889999999999999999999986532100           


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                               ...|...+.+.+.+++++ ++++|++|+++.++++.++++|+   +|+++|||||+.+..
T Consensus       143 ---------~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~---~vt~Et~ph~L~l~~  199 (335)
T cd01294         143 ---------LDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE---NVAATITPHHLLLTR  199 (335)
T ss_pred             ---------hhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC---CcEEEEchhHheeeH
Confidence                     011123446677888874 99999999999999999998876   899999999999774

In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.

>PRK10027 cryptic adenine deaminase; Provisional

Probab=99.81  E-value=8.8e-18  Score=162.15  Aligned_cols=231  Identities=17%  Similarity=0.154  Sum_probs=155.3

Q ss_pred             CccEEEECcEEEeCC--CceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079           52 SSKILIKGGTVVNAH--HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS  129 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~--~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~  129 (331)
                      +.+++|+|++|+++.  ....++|+|+||+|++|++......+.++||++|++|+|||||+|+|+..+.   .+++++  
T Consensus        29 ~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~~~~~vIDa~G~~v~PGlIDaHvHiess~---~~p~~~--  103 (588)
T PRK10027         29 VADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSM---MTPVTF--  103 (588)
T ss_pred             CCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCCCCCeEEECCCCEEEECeEeccccCCccc---CCHhHH--
Confidence            467899999999864  3457899999999999976432223458999999999999999999999862   367777  


Q ss_pred             HHHHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhccceeeccccc----cccC-CC----hhhHHHHHHHHHHhCCCe
Q 020079          130 GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHM----AITK-WD----EVVSDEMEVMVKEKGINS  199 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~----~~~~~~~~~~~~~~g~~~  199 (331)
                       .+.++.+||||++++..... ....+.++...+.....+.+.++..    +.+. ..    .-..++++++.+..++-+
T Consensus       104 -a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~g  182 (588)
T PRK10027        104 -ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTG  182 (588)
T ss_pred             -HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCcee
Confidence             44689999999997643322 2445666666655554444433322    2211 11    113577888886677888


Q ss_pred             EEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHH
Q 020079          200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA  279 (331)
Q Consensus       200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~  279 (331)
                      +...|++.+....+++.+.++...   .++++..|+.....  ..+..|...|+.+...     +...| +    ..+. 
T Consensus       183 lgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p~l~g--~~L~ay~aaGi~sDHE-----~~t~e-e----a~ek-  246 (588)
T PRK10027        183 LAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCPGLGG--KELNAYIAAGIENCHE-----SYQLE-E----GRRK-  246 (588)
T ss_pred             EEeccCccccccCCHHHHHHHHHh---CCCceECCCCCCCh--HHHHHHHHcCCCCCcc-----cCCHH-H----HHHH-
Confidence            899999888877788888888744   89999999865443  3335567778765431     11111 1    1122 


Q ss_pred             HhcCCCEEEEeCCCHHHHHHHHHHH
Q 020079          280 EFVNTPLYVVHVMSMDAMEEIAKAR  304 (331)
Q Consensus       280 ~~~g~~~~i~H~~~~~~~~~i~~~~  304 (331)
                      ...|..+.+-+.|....++.+..+.
T Consensus       247 lr~Gm~v~iRegS~~~nl~~l~~~~  271 (588)
T PRK10027        247 LQLGMSLMIREGSAARNLNALAPLI  271 (588)
T ss_pred             HHCCCEEEEeCCccccCHHHHHHHh
Confidence            2457778888887766656544443

>PRK07583 cytosine deaminase-like protein; Validated

Probab=99.81  E-value=4.3e-18  Score=161.40  Aligned_cols=256  Identities=19%  Similarity=0.193  Sum_probs=141.5

Q ss_pred             CccEEEECcEEEeC------------CCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNA------------HHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~------------~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ...++|+|+++-+.            +.....+|.|+||||++|++....+.+.++||++|++|+|||||+|+|++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~~~~~~id~~g~~v~Pg~id~H~Hld~~~~   89 (438)
T PRK07583         10 SGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHLDKGHI   89 (438)
T ss_pred             CCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCCCCCceecCCCCcccCCcccceecccccee
Confidence            34589999986321            123467999999999999987543335689999999999999999999977521


Q ss_pred             CC-----------------------CChhh----HHHHHHHHHhCCceEEecCcCCC-C--CcHHHHHHHHHHHhcc-c-
Q 020079          120 GS-----------------------ETIDD----FFSGQAAALAGGTTMHIDFVIPI-N--GSLTAGFEAYEKKAKN-S-  167 (331)
Q Consensus       120 ~~-----------------------~~~~~----~~~~~~~~l~~GvTtv~d~~~~~-~--~~~~~~~~~~~~~~~~-~-  167 (331)
                      ..                       .+.++    +..+.+.++.+|+|+++...... .  ....+.+....+..+. . 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~  169 (438)
T PRK07583         90 WPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIA  169 (438)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCe
Confidence            10                       01233    44556778899999766543321 1  1222223222222211 1 


Q ss_pred             ---eeeccccccccCCChhhHHHHHHHHHHh-CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhH
Q 020079          168 ---CMDYGFHMAITKWDEVVSDEMEVMVKEK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVF  242 (331)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~  242 (331)
                         ...+.++.....   . .+++.+.+.+. |..+.+.++.     ..+++.+.++++.|+++|+++.+|+ |+.....
T Consensus       170 ~~~v~~~p~~~~~~~---~-~~eL~~~v~~~~gv~g~~~~~~-----~~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~  240 (438)
T PRK07583        170 LQAVSLVPLDAYLTD---A-GERLADLVAEAGGLLGGVTYMN-----PDLDAQLDRLFRLARERGLDLDLHVDETGDPAS  240 (438)
T ss_pred             EEEEEecChhhccCc---h-HHHHHHHHHHcCCEEeCCCCCC-----CCHHHHHHHHHHHHHHhCCCcEEeECCCCCchH
Confidence               111222222211   1 14455554233 3333222211     1256889999999999999999998 5544322


Q ss_pred             H----HHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHH-------------HHHHHH
Q 020079          243 E----GQKRMIELGITGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM-------------EEIAKA  303 (331)
Q Consensus       243 ~----~~~~~~~~G~~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~-------------~~i~~~  303 (331)
                      .    ..+.+.+.|..++.  .|+....... .....+.++++++.|+.+..++.++....             ..++++
T Consensus       241 ~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~-~~~~~~~i~~la~~gv~vv~~P~~~~~l~~~~~~~~p~~~~~~~v~~l  319 (438)
T PRK07583        241 RTLKAVAEAALRNGFEGKVTCGHCCSLAVQP-EEQAQATIALVAEAGIAIVSLPMCNLYLQDRQPGRTPRWRGVTLVHEL  319 (438)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccchhcCC-HHHHHHHHHHHHHcCCeEEECcchhhhhcCCCcCCCCCCCCcchHHHH
Confidence            2    22334455654432  1221111000 11224566677776765433333221100             136777


Q ss_pred             HHcCCCEEEecCCc
Q 020079          304 RKAGPNFLNTTIPL  317 (331)
Q Consensus       304 ~~~Gi~v~~~~~p~  317 (331)
                      +++|++|..++.-.
T Consensus       320 ~~aGV~valGtD~~  333 (438)
T PRK07583        320 KAAGIPVAVASDNC  333 (438)
T ss_pred             HHCCCeEEEEeCCC
Confidence            78888888777643

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.80  E-value=1.4e-18  Score=159.78  Aligned_cols=206  Identities=23%  Similarity=0.188  Sum_probs=127.9

Q ss_pred             eEEeCCCCeeecccccccccccCCCCCCCC----hhh-----HHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHh
Q 020079           94 KVLDATGKFVMPGGIDPHTHLAMEFMGSET----IDD-----FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA  164 (331)
Q Consensus        94 ~~id~~g~~v~PG~ID~H~H~~~~~~~~~~----~~~-----~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~  164 (331)
                      ++||++|++|||||||+|+|+.........    .+.     .....+.++++||||++|++........+.+......+
T Consensus         2 ~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~g   81 (342)
T cd01299           2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGLLRDAIDAGLIPG   81 (342)
T ss_pred             cEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCccC
Confidence            689999999999999999998764211110    111     12456778999999999997543221122222222222


Q ss_pred             cccee------------eccc---------cccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC--------CCcCCHH
Q 020079          165 KNSCM------------DYGF---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG--------SFMINDE  215 (331)
Q Consensus       165 ~~~~~------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~--------~~~~~~~  215 (331)
                      ++...            ++..         +.......++..++++++. +.|++.+|+|+++..        ...++.+
T Consensus        82 Pr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e  160 (342)
T cd01299          82 PRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQL-RRGADQIKIMATGGVLSPGDPPPDTQFSEE  160 (342)
T ss_pred             CceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHH-HhCCCEEEEeccCCcCCCCCCCcccCcCHH
Confidence            22111            1100         0111223455667777777 689999999986521        1257899


Q ss_pred             HHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-
Q 020079          216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-  294 (331)
Q Consensus       216 ~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-  294 (331)
                      .++++++.|+++|+++.+|+.+...+.    ...+.|....+ |....        -++.++++++.|+.+  +++... 
T Consensus       161 ~l~~~~~~A~~~g~~v~~H~~~~~~i~----~~l~~G~~~i~-H~~~~--------~~~~~~~l~~~g~~~--~~t~~~~  225 (342)
T cd01299         161 ELRAIVDEAHKAGLYVAAHAYGAEAIR----RAIRAGVDTIE-HGFLI--------DDETIELMKEKGIFL--VPTLATY  225 (342)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHcCCCEEe-ecCCC--------CHHHHHHHHHCCcEE--eCcHHHH
Confidence            999999999999999999997654443    33455654332 22111        123456677777654  444321 


Q ss_pred             -------------------------HHHHHHHHHHHcCCCEEEecC
Q 020079          295 -------------------------DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       295 -------------------------~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                                               .....+++++++|++|.+++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD  271 (342)
T cd01299         226 EALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTD  271 (342)
T ss_pred             HHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecC
Confidence                                     234678899999999998775

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>TIGR01224 hutI imidazolonepropionase

Probab=99.78  E-value=1.6e-17  Score=154.96  Aligned_cols=245  Identities=16%  Similarity=0.130  Sum_probs=133.8

Q ss_pred             eeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCCCC-------------------------
Q 020079           69 QIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------------------  121 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-------------------------  121 (331)
                      ++++|+|+||+|++||+....+  .+.++||++|++|||||||+|+|+.+.....                         
T Consensus         2 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (377)
T TIGR01224         2 EDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILST   81 (377)
T ss_pred             CceEEEEECCEEEEEechhhCCcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHHH
Confidence            5789999999999999843222  2568999999999999999999997531100                         


Q ss_pred             ------CChhhHHH----HHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccc---cc-ccc----CCC
Q 020079          122 ------ETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGF---HM-AIT----KWD  181 (331)
Q Consensus       122 ------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~-~~~----~~~  181 (331)
                            .++++++.    ....++++|||++.+.......  .....++..++...+..+....   .. ...    ...
T Consensus        82 ~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  161 (377)
T TIGR01224        82 VRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRP  161 (377)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCH
Confidence                  11222222    2345688999998432111111  1122333333333322111110   00 000    011


Q ss_pred             hhhHHHH-HHHHH---Hh-CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCc
Q 020079          182 EVVSDEM-EVMVK---EK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP  256 (331)
Q Consensus       182 ~~~~~~~-~~~~~---~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~  256 (331)
                      ++..+.. +.+.+   .. ++.+++.+ +++  ...+.+.++++++.|+++|+++++|+....... ..+.+.+.|....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-~~~~~~~~g~~~~  237 (377)
T TIGR01224       162 DDYVDGICEELIPQVAEEGLASFADVF-CEA--GVFSVEQSRRILQAAQEAGLPVKLHAEELSNLG-GAELAAKLGAVSA  237 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeeEEE-ecC--CCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-HHHHHHHcCCCcc
Confidence            1111111 11221   22 35555543 232  234678999999999999999999974322111 1223334554433


Q ss_pred             ccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC--Cccccchhhhhhh
Q 020079          257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI--PLCDSCSNIIRMV  328 (331)
Q Consensus       257 ~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~--p~~~~~~~~~~~~  328 (331)
                      . |+...        -++.++++++.|+.  ++||+..     .....++++.++|+++++++.  |..+...++..++
T Consensus       238 ~-H~~~~--------~~~~l~~la~~g~~--~~~~P~~~~~l~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~  305 (377)
T TIGR01224       238 D-HLEHA--------SDAGIKALAEAGTV--AVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPGSSPTLSMQLIM  305 (377)
T ss_pred             H-HHhcC--------CHHHHHHHHhcCCE--EEECchHHHhcCCcCccHHHHHHCCCCEEEECCCCCCCChhHHHHHHH
Confidence            2 22211        13456677777876  4555442     235678999999999988775  4233334454443

This enzyme catalyzes the third step in histidine degradation.

>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid

Probab=99.78  E-value=4.4e-17  Score=152.40  Aligned_cols=248  Identities=15%  Similarity=0.105  Sum_probs=134.4

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCCC-CCChhhHHHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ  131 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~~~~~~~~~~~  131 (331)
                      ++|+|++|++++...+++|+|+||+|++|++....+  ++.++||++|++|+|||||+|+|+...... .....+.....
T Consensus         2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~   81 (387)
T cd01308           2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTL   81 (387)
T ss_pred             EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccccCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHH
Confidence            579999999977677889999999999999865322  356899999999999999999998753100 00112222445


Q ss_pred             HHHHhCCceEEecCcCCCCC-cHH----HHHHHHHHHhccceeeccccccccCCChhh-HHHHHHHHHH-hCCCeEEEEE
Q 020079          132 AAALAGGTTMHIDFVIPING-SLT----AGFEAYEKKAKNSCMDYGFHMAITKWDEVV-SDEMEVMVKE-KGINSFKFFM  204 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~~~ik~~~  204 (331)
                      ..++++|+||++|+....+. ...    +..+...+.+.+......+.........+. ..++.. .++ .+ .+.. ..
T Consensus        82 ~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~-~g~~-~~  158 (387)
T cd01308          82 SDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLL-IDKVIG-VGEI-AI  158 (387)
T ss_pred             HHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHH-HHHhcC-cceE-EE
Confidence            67799999999998732221 112    223333444444333322111000001111 112222 212 12 1111 11


Q ss_pred             ecCCCCcCCHHHHHHHHHHHHHcCC------cEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079          205 AYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR  277 (331)
Q Consensus       205 ~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~  277 (331)
                      ............+.++.+.++..+.      .+++|. +....++...+.+.+.|..-.+....+.....+  ..+..++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~  236 (387)
T cd01308         159 SDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTAP--LFEQGVE  236 (387)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcceeECCcccCCHH--HHHHHHH
Confidence            2222234567777788888876443      477776 344555555555666576322221111111111  1122333


Q ss_pred             HHHhcCCCEEEEeCCCH--------HHHHHHHHHHHcCC
Q 020079          278 LAEFVNTPLYVVHVMSM--------DAMEEIAKARKAGP  308 (331)
Q Consensus       278 l~~~~g~~~~i~H~~~~--------~~~~~i~~~~~~Gi  308 (331)
                      .++ .|..+.+.+.++.        ...+.++.+.+.|+
T Consensus       237 ~~~-~G~~v~i~~~~~~~~~~~~~~~~~~~l~~~~~~g~  274 (387)
T cd01308         237 FAK-MGGTIDLTSSIDPQFRKEGEVRPSEALKRLLEQGV  274 (387)
T ss_pred             HHH-cCCcEEEECCCCccccccCccChHHHHHHHHHhCC
Confidence            333 4555556654433        24577778878875

Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.

>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915

Probab=99.77  E-value=7.5e-17  Score=149.64  Aligned_cols=242  Identities=21%  Similarity=0.183  Sum_probs=132.7

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCC-CeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g-~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      +++|+|++|+++.   ..+|+|+||||++|++.... ++.++||++| ++|+|||||+|+|+..+  +....++.   ..
T Consensus         2 ~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~-~~~~~iD~~g~~~l~PG~ID~H~H~~~~--~~~~~~~~---~~   72 (365)
T TIGR03583         2 DLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITG-SAKQTIDLEGETYVSAGWIDDHTHCFPK--SALYYDEP---DE   72 (365)
T ss_pred             cEEEECcEEecCC---eeEEEEECCEEEEecCCCCC-CCCeEEECCCCeEEecCEEEeeeccCCC--cccccCCH---hH
Confidence            4899999999853   45899999999999874332 2458999999 99999999999999854  22233333   24


Q ss_pred             HHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccc--eeeccccccc--c---CCChhhHHHHHHHHHHh--CCCeEEEE
Q 020079          133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS--CMDYGFHMAI--T---KWDEVVSDEMEVMVKEK--GINSFKFF  203 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~--g~~~ik~~  203 (331)
                      .++++|||+++++............+..++...+.  .+++...+..  .   .......++++++.++.  ++.++|.+
T Consensus        73 ~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~  152 (365)
T TIGR03583        73 IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKAR  152 (365)
T ss_pred             hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEe
Confidence            46889999999976433333333333332222122  1222211111  0   11122345555555332  24566777


Q ss_pred             EecCC--CCcCCHHHHHHHHHHHHHcCCcEEEEcCCch-hhHHHHHHHHHcCCCCcccccc-cCC--hHHHHHHHHHHHH
Q 020079          204 MAYKG--SFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHAL-SRP--PLLEGEATTRAIR  277 (331)
Q Consensus       204 ~~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~G~~~~~~~~~-~~~--~~~e~~~i~~~~~  277 (331)
                      +++..  ....++..+.+.+..+ +.++|+.+|++... ...+..+. ...|. . -.|+. +.+  ...+...+.+.+.
T Consensus       153 ~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~-~~~g~-~-~~H~fng~~~~~~r~~g~~~~~~~  228 (365)
T TIGR03583       153 MSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPELDEILAL-MEKGD-V-LTHCFNGKPNGILRETGEVKPSVL  228 (365)
T ss_pred             ecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHH-hcCCC-e-eeeeecCCCCCCCCCcchHHHHHH
Confidence            76431  1223355555555544 68999999985543 33333333 23342 1 12221 111  0011111222333


Q ss_pred             HHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC
Q 020079          278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGP  308 (331)
Q Consensus       278 l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi  308 (331)
                      .....|.-+.+.|......++....++..++
T Consensus       229 ~~l~~G~i~d~~hg~~~~~~~~~~~~~~~~~  259 (365)
T TIGR03583       229 EAYNRGVILDVGHGTASFSFHVAEKAKRAGI  259 (365)
T ss_pred             HHHhCeEEEEeCCCCCCchHHHHHHHHhCCC
Confidence            3445577777776433444455666666564

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.

>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate

Probab=99.76  E-value=1.7e-17  Score=154.29  Aligned_cols=232  Identities=21%  Similarity=0.154  Sum_probs=130.9

Q ss_pred             EEEeCCEEEEeeCCCCCC----CCceEEeCCCCeeecccccccccccCCCC----------CC-----------------
Q 020079           73 VYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS-----------------  121 (331)
Q Consensus        73 v~i~~g~I~~ig~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~----------~~-----------------  121 (331)
                      |+|+||+|++|++....+    .+.++||++|++|+|||||+|+|+++...          +.                 
T Consensus         1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (371)
T cd01296           1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR   80 (371)
T ss_pred             CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence            579999999999864322    35689999999999999999999977421          10                 


Q ss_pred             ----CChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhcc--ceeecccc--ccccC---CChhh
Q 020079          122 ----ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKN--SCMDYGFH--MAITK---WDEVV  184 (331)
Q Consensus       122 ----~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~---~~~~~  184 (331)
                          .++++++    .....++++|||++++.......  ...+.++..++...+  ..+...+.  .....   ..++.
T Consensus        81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~  160 (371)
T cd01296          81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY  160 (371)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence                1223332    23455788999999984221111  122334444443332  11111111  01110   01111


Q ss_pred             ----HHHHHHHH-HHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079          185 ----SDEMEVMV-KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH  259 (331)
Q Consensus       185 ----~~~~~~~~-~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~  259 (331)
                          .+++.+.. .+.+..+++.+.. .  ...+.+.++++++.|+++|+++++|+........ .+...+.|.... .|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~-~~~~~~~g~~~i-~H  235 (371)
T cd01296         161 IDLVIEEVLPAVAEENLADFCDVFCE-K--GAFSLEQSRRILEAAKEAGLPVKIHADELSNIGG-AELAAELGALSA-DH  235 (371)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEeec-C--CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCCH-HHHHHHcCCCee-HH
Confidence                12222211 1245667776532 2  2346889999999999999999999843321111 122334554432 22


Q ss_pred             cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC--Cccc
Q 020079          260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI--PLCD  319 (331)
Q Consensus       260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~--p~~~  319 (331)
                      +....        .+.++++++.|+.  +++|+..     .....++++.++|++++.++.  |...
T Consensus       236 ~~~~~--------~~~i~~la~~g~~--v~~~P~~~~~l~~~~~~~~~l~~~Gv~v~lgsD~~p~~~  292 (371)
T cd01296         236 LEHTS--------DEGIAALAEAGTV--AVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPGSS  292 (371)
T ss_pred             hcCCC--------HHHHHHHHHcCCe--EEEChHHHHHhCCCCCCHHHHHHCCCcEEEecCCCCCCC
Confidence            22211        2456677777776  4555432     123568899999999987764  5543

In bacteria, the enzyme is part of histidine utilization (hut) operon.

>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate

Probab=99.75  E-value=5.5e-17  Score=150.73  Aligned_cols=191  Identities=19%  Similarity=0.236  Sum_probs=123.9

Q ss_pred             EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHHHHHHH
Q 020079           56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSGQAAA  134 (331)
Q Consensus        56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~~~~~~  134 (331)
                      +|+|++|+++....+++|+|+||+|+.|++....+...++||++|++|+|||||+|+|...... ....++.+....+.+
T Consensus         2 ~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~   81 (374)
T cd00854           2 IIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEAL   81 (374)
T ss_pred             EEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcccCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHHH
Confidence            7899999988445678999999999999986443334589999999999999999999865321 122467888889999


Q ss_pred             HhCCceEEecCcCCCCC-cHHHHHHHHHHHhccc--eeecccc--ccccC------CCh-----hhHHHHHHHHHHhCCC
Q 020079          135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS--CMDYGFH--MAITK------WDE-----VVSDEMEVMVKEKGIN  198 (331)
Q Consensus       135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~------~~~-----~~~~~~~~~~~~~g~~  198 (331)
                      +++|||+++++....+. ...+.+..+++.....  ...++++  ++...      .+.     ...++++++. +.+.+
T Consensus        82 ~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~-~~~~~  160 (374)
T cd00854          82 AKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWL-EAAGG  160 (374)
T ss_pred             HccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHH-HhcCC
Confidence            99999999988643332 3334444443322111  1111111  11110      011     1235677777 45557


Q ss_pred             eEEEEEecCCCCcCCHHHH--HHHHHHHHHcCCcEE-EEcC-CchhhHHHHHHHHHcCCCCccc
Q 020079          199 SFKFFMAYKGSFMINDELL--IEGFKRCKSLGALAM-VHAE-NGDAVFEGQKRMIELGITGPEG  258 (331)
Q Consensus       199 ~ik~~~~~~~~~~~~~~~l--~~~~~~A~~~g~~v~-~H~e-~~~~~~~~~~~~~~~G~~~~~~  258 (331)
                      .+|.+.       ..+|..  .++++.++++|+++. .|.. +.....    ...+.|.....+
T Consensus       161 ~ik~~t-------laPE~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~----~a~~~G~~~~tH  213 (374)
T cd00854         161 LIKLVT-------LAPELDGALELIRYLVERGIIVSIGHSDATYEQAV----AAFEAGATHVTH  213 (374)
T ss_pred             CEEEEE-------ECCCCCChHHHHHHHHHCCeEEEeeCCcCCHHHHH----HHHHcCCCeeeE
Confidence            788762       344555  789999999999995 9975 323332    234556655443

This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.

>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

Probab=99.74  E-value=1.1e-16  Score=152.07  Aligned_cols=66  Identities=30%  Similarity=0.596  Sum_probs=56.8

Q ss_pred             CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccC
Q 020079           51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAM  116 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~  116 (331)
                      ++.++++.|++|++++.  ..-..|.|+||||.+||+..+.    .+.+++||++|++|+|||||+|.|+..
T Consensus         3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~   74 (535)
T COG1574           3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLIS   74 (535)
T ss_pred             cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHH
Confidence            56789999999999885  4577999999999999986432    246799999999999999999999854

>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase

Probab=99.72  E-value=2.3e-16  Score=145.83  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=83.7

Q ss_pred             ccEEEECcEEEeCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHHH
Q 020079           53 SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSG  130 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~-~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~~  130 (331)
                      .+++|+|++|++++.. .+++|.|+||+|++|++....+++.++||++|++|+|||||+|+|...... ...+.+++...
T Consensus         3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~~   82 (380)
T TIGR00221         3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEIM   82 (380)
T ss_pred             ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCCCCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHHH
Confidence            4589999999997764 468999999999999875433334589999999999999999999865311 12355888888


Q ss_pred             HHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH
Q 020079          131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEK  162 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~  162 (331)
                      .+.++++|||+++++....+. ...+.++.+.+
T Consensus        83 ~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~  115 (380)
T TIGR00221        83 SERLPKSGCTSFLPTLITQPDENIKQAVKNMRE  115 (380)
T ss_pred             HHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHH
Confidence            999999999999987644432 34445555444

>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.70  E-value=7.8e-16  Score=142.99  Aligned_cols=250  Identities=20%  Similarity=0.157  Sum_probs=132.1

Q ss_pred             ccEEEECcEEEeC-CCceeeeEEEeCCEEEEeeCC-CCCCCCceEEeCCCCeeecccccccccccCCCCCC------CCh
Q 020079           53 SKILIKGGTVVNA-HHQQIADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------ETI  124 (331)
Q Consensus        53 ~~~~i~n~~i~~~-~~~~~~~v~i~~g~I~~ig~~-~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~------~~~  124 (331)
                      ..+++.+++.++. ...+++.|+|+||||++||+. ...+++.++||++|++|+|||||+|+|+...-.+.      ...
T Consensus        10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~~~~~   89 (406)
T COG1228          10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREAG   89 (406)
T ss_pred             hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCccchhhhcccC
Confidence            3477888888773 345679999999999999987 45556789999999999999999999998741000      000


Q ss_pred             hh-----------------------------HHHHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccc
Q 020079          125 DD-----------------------------FFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGF  173 (331)
Q Consensus       125 ~~-----------------------------~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  173 (331)
                      ..                             .......+++.|+|+.-........  ......+.........+.....
T Consensus        90 ~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~  169 (406)
T COG1228          90 ASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVGS  169 (406)
T ss_pred             ccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhccccccccccC
Confidence            00                             0011123455677666543322211  0011111111111001111100


Q ss_pred             -----ccccc--CCC-hhhHHHHHHHHHHhCCCeEEEEEe-cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079          174 -----HMAIT--KWD-EVVSDEMEVMVKEKGINSFKFFMA-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG  244 (331)
Q Consensus       174 -----~~~~~--~~~-~~~~~~~~~~~~~~g~~~ik~~~~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~  244 (331)
                           +....  ... +...+.+..+++.....++.-+.+ ......+++++++++++.|++.|+++.+|++..+...  
T Consensus       170 t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~--  247 (406)
T COG1228         170 TPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADGIK--  247 (406)
T ss_pred             ccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhccccccccCHHHHHHHHHHHHHCCCceEEEecccchHH--
Confidence                 11100  111 111222222121111111111111 1223457889999999999999999999997666443  


Q ss_pred             HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHh--cCCCE-EEEeCCC----HHHHHHHHHHHHcCCCEEEecC
Q 020079          245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF--VNTPL-YVVHVMS----MDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       245 ~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~--~g~~~-~i~H~~~----~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                        ...+.|.....+..         ..-.+.+.++.+  .|.++ .+.+-..    ....+.++++++.|++|...|.
T Consensus       248 --~A~~~g~~s~~H~~---------~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~~~~~l~~~GV~vai~TD  314 (406)
T COG1228         248 --LAIRLGAKSAEHGT---------LLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYKPARKLIDAGVKVAIGTD  314 (406)
T ss_pred             --HHHHhCcceehhhh---------hcCHhHHHHHhhccCCCccccccchhhhhhhcccchhHHHHHHCCCEEEEEcC
Confidence              33455554433211         111233455556  66541 1111111    2234568999999999987655

>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional

Probab=99.67  E-value=2.5e-15  Score=139.32  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=79.7

Q ss_pred             EEEECcEEEeCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC-----CCChhhHH
Q 020079           55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETIDDFF  128 (331)
Q Consensus        55 ~~i~n~~i~~~~~~-~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-----~~~~~~~~  128 (331)
                      ++|+|++|++++.. .+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|......-     ..+.+.++
T Consensus         2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~   81 (382)
T PRK11170          2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLE   81 (382)
T ss_pred             EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCCCCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHH
Confidence            67999999998764 4679999999999998754333345899999999999999999997543211     12456777


Q ss_pred             HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH
Q 020079          129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEK  162 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~  162 (331)
                      ...+.++++|||++.+.....+. ...+.++.+++
T Consensus        82 ~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~  116 (382)
T PRK11170         82 IMQKANEKSGCTSFLPTLITSSDELMKQAVRVMRE  116 (382)
T ss_pred             HHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHH
Confidence            77788899999999977544332 33444444443

>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=7.2e-16  Score=138.05  Aligned_cols=243  Identities=16%  Similarity=0.076  Sum_probs=147.1

Q ss_pred             eeeeEEEeC-CEEEEeeCCCCCC----------CCceEEeCCCCeeecccccccccccCCC----C--------------
Q 020079           69 QIADVYVED-GIVVAVQPNINVG----------DDVKVLDATGKFVMPGGIDPHTHLAMEF----M--------------  119 (331)
Q Consensus        69 ~~~~v~i~~-g~I~~ig~~~~~~----------~~~~~id~~g~~v~PG~ID~H~H~~~~~----~--------------  119 (331)
                      ++..+.|.| |||..|++....+          +..++++.+|+++||||||+|+|....+    .              
T Consensus        26 e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~  105 (439)
T KOG3968|consen   26 EGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYT  105 (439)
T ss_pred             cCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhcce
Confidence            356678876 9999999854221          2457899999999999999999932110    0              


Q ss_pred             ----CCCCh-hhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc--cc--cccC---CChh
Q 020079          120 ----GSETI-DDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF--HM--AITK---WDEV  183 (331)
Q Consensus       120 ----~~~~~-~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~---~~~~  183 (331)
                          +..+. ++.+    ...+..+++|+||+.-............++.....+.|..+....  ..  +...   ..++
T Consensus       106 f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~  185 (439)
T KOG3968|consen  106 FPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEE  185 (439)
T ss_pred             eecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhHHH
Confidence                11111 2222    334668999999998665433334445555666666664433211  01  1111   1122


Q ss_pred             hHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHH----------HHH
Q 020079          184 VSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK----------RMI  249 (331)
Q Consensus       184 ~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~----------~~~  249 (331)
                      ..+..+++..   +.+.......+.+.....|+.+.+....+.|+.++++++.|. |+.++++..+.          .+.
T Consensus       186 si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd  265 (439)
T KOG3968|consen  186 SIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYD  265 (439)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHH
Confidence            2333333331   122222222224445567899999999999999999999995 88999887762          266


Q ss_pred             HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC---HHHHHHHHHHHHcCCCEEE--ecCC
Q 020079          250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGPNFLN--TTIP  316 (331)
Q Consensus       250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~---~~~~~~i~~~~~~Gi~v~~--~~~p  316 (331)
                      +.|++++..-..+..     .--++.+++.++.|+.+..|++|+   .+++..++++.+.|+.|.+  |+|+
T Consensus       266 ~~~lL~~ktvlaH~~-----hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~~v~VgLGtDv~~  332 (439)
T KOG3968|consen  266 KGGLLTEKTVLAHLE-----HLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRVRELLDIGVIVGLGTDVSG  332 (439)
T ss_pred             HhcccchHhHhhhhe-----ecCchhHHHHHhcCCceEECCcchhhhccCCccHHHHHhcCceEeecCCccc
Confidence            677777553222211     112345677788787644444433   4677889999999999875  4554

>PLN02599 dihydroorotase

Probab=99.67  E-value=2.2e-15  Score=138.04  Aligned_cols=191  Identities=16%  Similarity=0.105  Sum_probs=133.1

Q ss_pred             eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-c--ceeeccccccc
Q 020079          102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMAI  177 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~  177 (331)
                      +.+|---|+|+|+.+.        .+....--..++|+|++++|.+..+. ...+.+..+++... .  ..+++.+++..
T Consensus        23 ~~~~~~~d~h~hlr~~--------~~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l   94 (364)
T PLN02599         23 LTITRPDDWHLHLRDG--------AKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTL   94 (364)
T ss_pred             EEecCCcceeeEccCc--------HHHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEE
Confidence            6689999999999875        22222334578999999999765433 45555555554443 3  34677766544


Q ss_pred             cCCChhhHHHHHHHHHHhCCC-eEEEEEecCC---CCcC-CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079          178 TKWDEVVSDEMEVMVKEKGIN-SFKFFMAYKG---SFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG  252 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g~~-~ik~~~~~~~---~~~~-~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G  252 (331)
                      ........+++.++. +.|+. ++|+|+....   .... +.+.+..+++.+++.|+++.+|+|+.+.....        
T Consensus        95 ~lt~~~~l~Ei~~~~-~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~--------  165 (364)
T PLN02599         95 YLTDNTTPEEIKAAK-ASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDI--------  165 (364)
T ss_pred             ecCCCCCHHHHHHHH-HCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccc--------
Confidence            222223457777775 78988 9999875321   1112 35889999999999999999999985431100        


Q ss_pred             CCCcccccccCChHHHHHHHHHHH--HHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~--~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                                  ...|...+.+.+  .+++..|.++|++|+|+.++++.++++|+ + +|++++||||+.+..
T Consensus       166 ------------~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~-~-~vtae~tpHhL~l~~  224 (364)
T PLN02599        166 ------------FDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGD-G-NVAATVTPQHLLLNR  224 (364)
T ss_pred             ------------cccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccC-C-CEEEEecHHHHhcCH
Confidence                        001223355666  47777899999999999999999999884 4 999999999998764

>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B

Probab=99.65  E-value=3.3e-16  Score=108.86  Aligned_cols=67  Identities=49%  Similarity=0.608  Sum_probs=47.8

Q ss_pred             EEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEE
Q 020079           73 VYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH  142 (331)
Q Consensus        73 v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv  142 (331)
                      |+|+||||++|++....+ +..++||++|++|+|||||+|+|+..+.   ............++++|||||
T Consensus         1 V~I~~g~I~~v~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~---~~~~~~~~~~~~~l~~GvTTV   68 (68)
T PF13594_consen    1 VLIEDGKIVAVGPDSELPADAAEVIDAKGKYVMPGFIDMHTHLGEPG---WQSLDPETEAAAALAGGVTTV   68 (68)
T ss_dssp             EEEETTEEEEEESSCCTTSTCCEEEEETTCEEEE-EEEEEE-TTTTC---EGGCTCHHHHHHHHHTTEEEE
T ss_pred             CEEECCEEEEeCCCCCCCCCCCEEEECCCCEEeCCeEeeeecccccc---ccccchhhHHHHHHCcceeeC
Confidence            689999999997654433 4567899999999999999999987431   111112344566789999997

...

>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases

Probab=99.65  E-value=5.2e-15  Score=142.26  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=58.2

Q ss_pred             CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                      ..++++.+.++++.|+++|+++++|+.+...+....+.+                        ++........+.+..+.
T Consensus       290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~------------------------~~~~~~~g~~~~r~~i~  345 (479)
T cd01300         290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDAL------------------------EAALKDNPRADHRHRIE  345 (479)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHH------------------------HHHHHhcCCCCCCceee
Confidence            356899999999999999999999997655544332221                        11111111225678899


Q ss_pred             eCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          290 HVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       290 H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                      |+...+. +.++++++.|+.++  +||+++..
T Consensus       346 H~~~~~~-~~~~~l~~~gv~~~--~~P~~~~~  374 (479)
T cd01300         346 HAQLVSP-DDIPRFAKLGVIAS--VQPNHLYS  374 (479)
T ss_pred             ecccCCH-HHHHHHHHcCCceE--eCcccccC
Confidence            9876554 77889999996655  78887654

YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.

>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A

Probab=99.62  E-value=7.1e-14  Score=132.57  Aligned_cols=227  Identities=26%  Similarity=0.283  Sum_probs=130.8

Q ss_pred             EEEECcEEEeCCC-c--eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC--CC-CCChhhHH
Q 020079           55 ILIKGGTVVNAHH-Q--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MG-SETIDDFF  128 (331)
Q Consensus        55 ~~i~n~~i~~~~~-~--~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~--~~-~~~~~~~~  128 (331)
                      ++|+|++|+++.. .  +.++|+|+||+|++|++...  .+.++||++|++|+|||||+|+|+..+.  .+ ...++++.
T Consensus         2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE~~~   79 (556)
T TIGR03121         2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPEDHR   79 (556)
T ss_pred             EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHHHHh
Confidence            6899999999754 2  35899999999999987533  2358999999999999999999998741  11 12334333


Q ss_pred             H----------------------HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc----------c
Q 020079          129 S----------------------GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM----------A  176 (331)
Q Consensus       129 ~----------------------~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  176 (331)
                      .                      ....+++.|+||++|..-++.. .+..-+++..   ...+|-+...          .
T Consensus        80 ~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~~p~~-arh~h~e~~~---~p~~d~~~~~~~gnn~~~~~~  155 (556)
T TIGR03121        80 RDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAVPPLN-ARHTHEEFAD---TPILDKGGYTLLGNNWFLLEY  155 (556)
T ss_pred             hcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCCCccc-hhhhHHHhcc---CccccccceEEecchHHHHHH
Confidence            2                      1234678899999998655432 2222222211   1112211110          0


Q ss_pred             ccCCChhhHHHHHH-HHHHhCCCeEEEEEecCC------------------CCcCC-HHHHHHHHHHHHHcCCc--EEEE
Q 020079          177 ITKWDEVVSDEMEV-MVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGAL--AMVH  234 (331)
Q Consensus       177 ~~~~~~~~~~~~~~-~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~A~~~g~~--v~~H  234 (331)
                      ....+.+.+++... +.+....-++|+. +|.+                  .+.++ .+.++.+.+..+++|+|  +|+|
T Consensus       156 ~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lph~~h~H  234 (556)
T TIGR03121       156 LKDGEPEKAAAYVAWLLKATKGYGIKVV-NPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLPHSIHVH  234 (556)
T ss_pred             HhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence            11112222222222 2223345567765 3322                  12233 56677888888999997  6667


Q ss_pred             cCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC------EEEEeCC-----------CHHHH
Q 020079          235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP------LYVVHVM-----------SMDAM  297 (331)
Q Consensus       235 ~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~------~~i~H~~-----------~~~~~  297 (331)
                      |.+..-..                       ..+  ...+.+++++  |.+      +|+.|+-           ..+..
T Consensus       235 ~nnlg~pg-----------------------n~~--~t~~t~~~~~--g~~~~~~~~~h~tH~qf~syg~~~~~~f~s~a  287 (556)
T TIGR03121       235 CNNLGVPG-----------------------NYE--TTLDTLDAAE--GVKPNRNQVLHLTHVQFHSYGGTSWRDFESGA  287 (556)
T ss_pred             cCCCCCCC-----------------------chH--HHHHHHHHhc--CCCCCccceeEeeeeeeeccCCCCCCCcchhH
Confidence            76542211                       111  1122233333  445      8888862           13455


Q ss_pred             HHHHHHHHcCCCEEEecC
Q 020079          298 EEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       298 ~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+..+-++.-+|++|+-
T Consensus       288 ~~~a~~vn~~~~~t~d~G  305 (556)
T TIGR03121       288 EKIADYVNANPNVTIDVG  305 (556)
T ss_pred             HHHHHHHhcCCCEEEEeC
Confidence            678888888889998754

Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.

>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor

Probab=99.61  E-value=9.2e-14  Score=131.22  Aligned_cols=227  Identities=24%  Similarity=0.227  Sum_probs=133.6

Q ss_pred             EECcEEEeCCC-c--eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC---CCCCChhhHH--
Q 020079           57 IKGGTVVNAHH-Q--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF---MGSETIDDFF--  128 (331)
Q Consensus        57 i~n~~i~~~~~-~--~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~---~~~~~~~~~~--  128 (331)
                      |+|++|+++.. .  .+++|+|+||+|++|++..   ++.++||++|++|+|||||+|+|+....   .....||+.+  
T Consensus         1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~   77 (541)
T cd01304           1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRD   77 (541)
T ss_pred             CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhcc
Confidence            57899998764 2  5789999999999998743   2358999999999999999999997641   1223344333  


Q ss_pred             ---------------------HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc----------cc
Q 020079          129 ---------------------SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM----------AI  177 (331)
Q Consensus       129 ---------------------~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  177 (331)
                                           .+ -.+.+-|.||+++..-++.. .+..-+++..   ...+|-+...          ..
T Consensus        78 ~~~~~~~~~~~~g~~~pst~~tg-y~ya~mGytt~~e~a~~p~~-a~h~h~e~~~---~p~~d~~~~~~~gnn~~~~~~~  152 (541)
T cd01304          78 PVPKGALRRAGVGFSVPSTLATG-YRYAEMGYTTAFEAAMPPLN-ARHTHEEMAD---TPILDKGAYPLLGNNWFVLEYL  152 (541)
T ss_pred             ccccccccccCCCccCCCchHhh-hHHHhcCcceeecccCCccc-chhhhHHhcc---CccccccceEEecchHHHHHHH
Confidence                                 11 23456799999977544322 1222222211   1112211100          01


Q ss_pred             cCCChhhHHHHHH-HHHHhCCCeEEEEEecCC------------------CCcCC-HHHHHHHHHHHHHcCCcEEEE--c
Q 020079          178 TKWDEVVSDEMEV-MVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGALAMVH--A  235 (331)
Q Consensus       178 ~~~~~~~~~~~~~-~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~A~~~g~~v~~H--~  235 (331)
                      ...+.+.+++... +.+....-++|+. +|.+                  .+.++ .+.++.+.+..+++|+|..+|  |
T Consensus       153 ~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~  231 (541)
T cd01304         153 RDGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHC  231 (541)
T ss_pred             hcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            1112222222222 2223345567765 3322                  12233 567788889999999876555  5


Q ss_pred             CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC-----CEEEEeCC---C--------HHHHHH
Q 020079          236 ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT-----PLYVVHVM---S--------MDAMEE  299 (331)
Q Consensus       236 e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~-----~~~i~H~~---~--------~~~~~~  299 (331)
                      .+.....                       .  .+...+.+++++....     .+|+.|+-   .        .+..+.
T Consensus       232 nnlg~pg-----------------------n--~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~  286 (541)
T cd01304         232 NNLGVPG-----------------------N--YETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAER  286 (541)
T ss_pred             ccCCCCC-----------------------c--HHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHH
Confidence            4432211                       1  1222444566665544     48888873   1        356788


Q ss_pred             HHHHHHcCCCEEEecCCc
Q 020079          300 IAKARKAGPNFLNTTIPL  317 (331)
Q Consensus       300 i~~~~~~Gi~v~~~~~p~  317 (331)
                      +..+.+++.+|++|+.+.
T Consensus       287 i~~~~n~~~~it~D~G~v  304 (541)
T cd01304         287 IADYVNANDHVTIDVGQV  304 (541)
T ss_pred             HHHHHHcCCCEEEEeCce
Confidence            999999999999998876

FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.

>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.60  E-value=8.4e-14  Score=124.70  Aligned_cols=84  Identities=29%  Similarity=0.440  Sum_probs=66.1

Q ss_pred             ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079           53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS  129 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~  129 (331)
                      .|++|+++.|+|+.+  ....+|.|+||+|++|++..... ...++||+.|++|.|||||+|+|-+..+.    .+..  
T Consensus         6 YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg~~~~eevDaagriVaPGFIDvHtHyD~~~~----~d~~--   79 (579)
T COG3653           6 YDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVHTHYDAEVL----LDPG--   79 (579)
T ss_pred             eeEEEeeceEEeCCCCCccccccccccceEEEEecccccccCCCeeecccCcEecccEEEeeecccceee----ecCC--
Confidence            579999999999874  56779999999999999865432 23489999999999999999999875421    1111  


Q ss_pred             HHHHHHhCCceEEe
Q 020079          130 GQAAALAGGTTMHI  143 (331)
Q Consensus       130 ~~~~~l~~GvTtv~  143 (331)
                       .+..+.+|||||+
T Consensus        80 -l~psv~hGVTTVv   92 (579)
T COG3653          80 -LRPSVRHGVTTVV   92 (579)
T ss_pred             -ccchhhcCeeEEE
Confidence             3445789999998

>PRK05451 dihydroorotase; Provisional

Probab=99.59  E-value=5.7e-14  Score=128.90  Aligned_cols=190  Identities=18%  Similarity=0.120  Sum_probs=123.1

Q ss_pred             eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc---ceeeccccccc
Q 020079          102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN---SCMDYGFHMAI  177 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~  177 (331)
                      +-+|--||+|+|+...    ...+++..+.    +.++|+++||....+. ...+.++........   ..+++.++...
T Consensus         5 ~~~~~~~d~h~hl~~~----~~~~~~~~~~----~~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i   76 (345)
T PRK05451          5 LTIRRPDDWHLHLRDG----AMLKAVVPYT----ARQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTL   76 (345)
T ss_pred             EEecCcceEEEecCCc----hHHHHHHHHH----HHhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence            5578889999999863    2223444443    3669999998654333 234444444443322   22455444333


Q ss_pred             cCCChhhHHHHHHHHHHhCC-CeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079          178 TKWDEVVSDEMEVMVKEKGI-NSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG  252 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g~-~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G  252 (331)
                      ........+++.++. +.|+ .++|+|+....    ....+++.+.++++.+++.|+++.+|+|+.......        
T Consensus        77 ~~~~~~~~~El~~~~-~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~--------  147 (345)
T PRK05451         77 YLTDNTDPDELERAK-ASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI--------  147 (345)
T ss_pred             EeCCCCCHHHHHHHH-HCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCccccc--------
Confidence            322223457777776 6784 59999875311    111267889999999999999999999874431100        


Q ss_pred             CCCcccccccCChHHHHHHHHHH-HHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          253 ITGPEGHALSRPPLLEGEATTRA-IRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~-~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                                  ...|...+.+. ..++..+ |+++|++|+++.++++.++++   |.+|+++|||||+.++.
T Consensus       148 ------------~~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~a---~~~it~Et~ph~L~l~~  205 (345)
T PRK05451        148 ------------FDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREA---NDNLAATITPHHLLINR  205 (345)
T ss_pred             ------------ccchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHhc---CCCEEEEecHHHHhcCH
Confidence                        00012334444 3477666 999999999999998888765   67999999999999773

>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type

Probab=99.56  E-value=1.1e-13  Score=126.44  Aligned_cols=191  Identities=14%  Similarity=0.107  Sum_probs=125.9

Q ss_pred             eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-c--eeeccccccc
Q 020079          102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-S--CMDYGFHMAI  177 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~--~~~~~~~~~~  177 (331)
                      +.+|---|+|+|+.+.        .+.....-+..-|||++++|....+. ...+.++...+.... .  .+++.++++.
T Consensus         2 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v   73 (341)
T TIGR00856         2 LTIRRPDDWHLHLRDG--------AMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL   73 (341)
T ss_pred             ceecCccceeeeccCc--------hHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence            4567778999999875        22222333556679999999765443 234455444444332 3  2467666665


Q ss_pred             cCCChhhHHHHHHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCC
Q 020079          178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI  253 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~  253 (331)
                      ....+...+++.++.+..|+.++|+|+...+    ....++..+.++++.+++.|+++.+|+|+.......         
T Consensus        74 ~~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~---------  144 (341)
T TIGR00856        74 YLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI---------  144 (341)
T ss_pred             ECCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc---------
Confidence            4333335677877773449999999864221    112245789999999999999999999885311000         


Q ss_pred             CCcccccccCChHHHHHHHHHH-HHHHH-hcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          254 TGPEGHALSRPPLLEGEATTRA-IRLAE-FVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       254 ~~~~~~~~~~~~~~e~~~i~~~-~~l~~-~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                                 ...|..++.+. ..++. ..+.+++++|+++..+++.++++|.   +|+++|||||+.++.
T Consensus       145 -----------~~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~~---~vt~E~~ph~L~l~~  202 (341)
T TIGR00856       145 -----------FDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNN---RLAATITPQHLMFTR  202 (341)
T ss_pred             -----------ccchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcCC---CEEEEEcHHHHhccH
Confidence                       00122334433 34454 4489999999999999999988864   499999999998765

This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.

>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine

Probab=99.54  E-value=5e-13  Score=126.23  Aligned_cols=199  Identities=20%  Similarity=0.240  Sum_probs=122.7

Q ss_pred             eCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCC-CCCcHHHHHHHHHHHhccceeeccccc
Q 020079           97 DATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHM  175 (331)
Q Consensus        97 d~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (331)
                      |++|++|+|||||+|+|+..+  + .+++.+   .+.++.+||||++++... .+....+.++...+...+.++++.+..
T Consensus         1 Da~G~~v~PG~ID~H~Hi~~~--~-~~~~~~---~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~   74 (422)
T cd01295           1 DAEGKYIVPGFIDAHLHIESS--M-LTPSEF---AKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML   74 (422)
T ss_pred             CCCCCEEccCEEEccCCcCCC--C-CChHHH---HHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence            789999999999999999886  2 234333   678899999999986432 222445566665555544555554333


Q ss_pred             cc----cCC--Chh--hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHH
Q 020079          176 AI----TKW--DEV--VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR  247 (331)
Q Consensus       176 ~~----~~~--~~~--~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~  247 (331)
                      +.    +..  ...  ..++++++.+..++.+++.++++... ..+++.+.+.++.|+++|+++.+|+.....  .....
T Consensus        75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a  151 (422)
T cd01295          75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNA  151 (422)
T ss_pred             CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHH
Confidence            32    111  111  36778877744588999988776532 336678999999999999999999855432  22233


Q ss_pred             HHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHH-HHH-cCCCEEEecC
Q 020079          248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK-ARK-AGPNFLNTTI  315 (331)
Q Consensus       248 ~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~-~~~-~Gi~v~~~~~  315 (331)
                      +.+.|....  |..   ..     .++..+.. +.|..+.+.+.+....++.+.+ ..+ .+.++..+|.
T Consensus       152 ~l~aGi~~d--H~~---~~-----~eea~e~l-~~G~~i~i~~g~~~~~~~~~~~~l~~~~~~~i~l~TD  210 (422)
T cd01295         152 YMAAGISTD--HEA---MT-----GEEALEKL-RLGMYVMLREGSIAKNLEALLPAITEKNFRRFMFCTD  210 (422)
T ss_pred             HHHcCCCCC--cCC---Cc-----HHHHHHHH-HCCCEEEEECcccHhhHHHHHHhhhhccCCeEEEEcC
Confidence            444565331  211   11     12222333 4688888887665444443333 222 4677777665

This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.

>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.51  E-value=7.7e-13  Score=114.84  Aligned_cols=178  Identities=18%  Similarity=0.215  Sum_probs=113.5

Q ss_pred             EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC----CCCCCh--hhHHH
Q 020079           56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF----MGSETI--DDFFS  129 (331)
Q Consensus        56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~----~~~~~~--~~~~~  129 (331)
                      +|.|++|+..+..-+++|+|+||+|..|.+....  ...-+|++|.+++|||||+|+.--..+    .|-.++  ..+..
T Consensus         2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~--~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~a   79 (377)
T COG3454           2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP--LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILA   79 (377)
T ss_pred             ccccceEEeecceeeeeEEEecceEeeeccccCc--ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHH
Confidence            6889999999988889999999999999986542  246799999999999999999643321    122222  22333


Q ss_pred             HHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHH--hccceeeccccccccCCChhhHHHHHHHHHHhCCCe
Q 020079          130 GQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKK--AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS  199 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  199 (331)
                      -.+..+.+|||||.|.-..++.        +..+.++...+.  ..+...+-.+|..+.....+.+..++++.....+..
T Consensus        80 hD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~L  159 (377)
T COG3454          80 HDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKL  159 (377)
T ss_pred             hhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeE
Confidence            4456788999999976432221        334444444442  223445556666665555566667777764344444


Q ss_pred             EEEEEecCCC----------------CcCCHHH-------------------HHHHHHHHHHcCCcEEEEc
Q 020079          200 FKFFMAYKGS----------------FMINDEL-------------------LIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       200 ik~~~~~~~~----------------~~~~~~~-------------------l~~~~~~A~~~g~~v~~H~  235 (331)
                      +..+-...+.                ..+++++                   ...+.+.|+++|+.+..|-
T Consensus       160 iSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~~r~~i~~~c~~rgI~lASHD  230 (377)
T COG3454         160 ISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDPNRQAIAALCRERGIALASHD  230 (377)
T ss_pred             EEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHcCCceecCC
Confidence            4332111111                1233333                   3567788999999999994

>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=5.7e-13  Score=119.97  Aligned_cols=88  Identities=27%  Similarity=0.395  Sum_probs=72.7

Q ss_pred             EEEECcEEEeCCCce-eeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC--CCCChhhHHHHH
Q 020079           55 ILIKGGTVVNAHHQQ-IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM--GSETIDDFFSGQ  131 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~-~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~--~~~~~~~~~~~~  131 (331)
                      .+|+|++|+++.... ++.+.|+||+|.+|.+ .+.+.+.++||.+|.+|+|||||.|+|.+....  ...+.+.+....
T Consensus         2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~   80 (380)
T COG1820           2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMA   80 (380)
T ss_pred             ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCCCcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHH
Confidence            578999999999865 5699999999999998 335557899999999999999999999877522  113456677778


Q ss_pred             HHHHhCCceEEe
Q 020079          132 AAALAGGTTMHI  143 (331)
Q Consensus       132 ~~~l~~GvTtv~  143 (331)
                      +..++.|||++.
T Consensus        81 ~~~~~~GtTsfL   92 (380)
T COG1820          81 EAHLRHGTTSFL   92 (380)
T ss_pred             HHhhhcCeeeee
Confidence            888999999998

>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]

Probab=99.49  E-value=1.3e-12  Score=116.24  Aligned_cols=170  Identities=18%  Similarity=0.231  Sum_probs=127.9

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCCC
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE  122 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~  122 (331)
                      .|++|+|+.|+|..++.+.+|.|+||||..||+...+          .+.+++|-++|++|..|=||+|+|+..+     
T Consensus        67 ~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P-----  141 (568)
T COG0804          67 LDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP-----  141 (568)
T ss_pred             ccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH-----
Confidence            5899999999999899999999999999999985432          1346789999999999999999998765     


Q ss_pred             ChhhHHHHHHHHHhCCceEEecCcCCCC-C-------cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079          123 TIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE  194 (331)
Q Consensus       123 ~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (331)
                        +.    ...++.+||||+.--+..+. +       ...-.+..+.+.....++++++.+.-   +......+.+.+ +
T Consensus       142 --qq----i~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKG---n~s~~~~L~Eqi-~  211 (568)
T COG0804         142 --QQ----IEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGFLGKG---NASNPAPLAEQI-E  211 (568)
T ss_pred             --HH----HHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEEeecC---CCCCchhHHHHH-h
Confidence              22    56789999999985432221 1       22334555556666677777765422   223334566677 7


Q ss_pred             hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                      .|+.++|+.-+|.    .++..+..+++.|.++++.+.+|.....|.
T Consensus       212 aGa~GlKlHEDWG----~TpaaI~~~L~VAD~~DvqVaiHtDTLNEs  254 (568)
T COG0804         212 AGAIGLKLHEDWG----ATPAAIDTCLSVADEYDVQVAIHTDTLNES  254 (568)
T ss_pred             hccceeEeecccC----CCHHHHHHHHhhhhhhceEEEEeecccccc
Confidence            8999999876654    578999999999999999999997554443

>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases

Probab=99.46  E-value=2.4e-13  Score=120.45  Aligned_cols=186  Identities=16%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             eeecccccccccccCCCC-C-----------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCCCcH
Q 020079          102 FVMPGGIDPHTHLAMEFM-G-----------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSL  153 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~-~-----------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~~~  153 (331)
                      +|||||||+|+|+.+... |                       ..++++++..    ...++++||||+.|+........
T Consensus         1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~   80 (263)
T cd01305           1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI   80 (263)
T ss_pred             CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence            589999999999976521 0                       1223333332    34568899999999853222122


Q ss_pred             HHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      ....+...+.+.+.   ..+.. .... .+..+   ++.  ...+.    ++++.+..++   ++++++.|+++|+++++
T Consensus        81 ~a~~~a~~~~g~r~---~~~~~-~~~~-~~~~~---~~~--~~~~~----~~~~~~~~~~---l~~~~~~A~~~g~~v~~  143 (263)
T cd01305          81 ELLRRALGKLPVPF---EVILG-RPTE-PDDPE---ILL--EVADG----LGLSSANDVD---LEDILELLRRRGKLFAI  143 (263)
T ss_pred             HHHHHHHHhcCCCc---eEEec-cCCc-chHHH---HHH--hhccc----ccCCCCCccC---HHHHHHHHHHCCCeeEE
Confidence            33334444444442   11110 0111 11112   222  12222    3444444444   99999999999999999


Q ss_pred             Ec-CCchhh-HHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHc
Q 020079          234 HA-ENGDAV-FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKA  306 (331)
Q Consensus       234 H~-e~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~  306 (331)
                      |+ |...+. ....+++.+.|... -.|+....        ++.++++++.|+.  ++||+..     .+...+++++++
T Consensus       144 H~~e~~~~~g~~~i~~~~~~~~~~-i~H~~~l~--------~~~~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~l~~~  212 (263)
T cd01305         144 HASETRESVGMTDIERALDLEPDL-LVHGTHLT--------DEDLELVRENGVP--VVLCPRSNLYFGVGIPPVAELLKL  212 (263)
T ss_pred             ecCCCCCCCCchhHHHHHhCCCCE-EEEcCCCC--------HHHHHHHHHcCCc--EEEChhhHHHhCCCCCCHHHHHHC
Confidence            97 443311 11123444444322 13332211        2356788888887  5555431     234578999999


Q ss_pred             CCCEEEecC
Q 020079          307 GPNFLNTTI  315 (331)
Q Consensus       307 Gi~v~~~~~  315 (331)
                      |++|+.++.
T Consensus       213 Gv~v~lGtD  221 (263)
T cd01305         213 GIKVLLGTD  221 (263)
T ss_pred             CCcEEEECC
Confidence            999998876

These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.

>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.35  E-value=2.1e-11  Score=112.86  Aligned_cols=227  Identities=22%  Similarity=0.140  Sum_probs=114.5

Q ss_pred             CCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC-------------CChh--------hHHHHHHHHH
Q 020079           77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------ETID--------DFFSGQAAAL  135 (331)
Q Consensus        77 ~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-------------~~~~--------~~~~~~~~~l  135 (331)
                      ||||++|++....+.+.++||++|++|+|||||+|+|++....+.             .+++        ........++
T Consensus         1 ~gkI~~i~~~~~~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~   80 (359)
T cd01309           1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRAR   80 (359)
T ss_pred             CCEEEEEcCCCCCCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHH
Confidence            799999999766555779999999999999999999998752211             0000        0113456788


Q ss_pred             hCCceEEecCcCCCCC-cHHH--------HHHHHHHHhccceeecccc--ccccC-----CCh---hhHHHHHHHHH---
Q 020079          136 AGGTTMHIDFVIPING-SLTA--------GFEAYEKKAKNSCMDYGFH--MAITK-----WDE---VVSDEMEVMVK---  193 (331)
Q Consensus       136 ~~GvTtv~d~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~---~~~~~~~~~~~---  193 (331)
                      ++|||++.-....... ....        ..+... ......+.+.+.  .....     .+.   .....+++...   
T Consensus        81 ~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~-~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~~a~  159 (359)
T cd01309          81 AGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMF-IKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKAQ  159 (359)
T ss_pred             hcCceEEEecCCCCCcccceEEEEECCCCCHHHhc-ccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHHHHH
Confidence            9999999644322111 0000        001100 011111111111  00000     000   01111221110   


Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT  273 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~  273 (331)
                      +......+ +..........+..++.+.+.++.. +++.+|+.....+....+...+.|+.-.-.|+.        .. .
T Consensus       160 ~y~~~~~~-~~~~~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~~~~i~~~l~~~~e~g~~~~i~H~~--------~~-~  228 (359)
T cd01309         160 EYGRKYDL-GKNAKKDPPERDLKLEALLPVLKGE-IPVRIHAHRADDILTAIRIAKEFGIKITIEHGA--------EG-Y  228 (359)
T ss_pred             HHHHHhhh-hhhcccCCCCCCccHHHHHHHHcCC-eeEEEEeCCHHHHHHHHHHHHHcCCCEEEECch--------hH-H
Confidence            10000000 0000000011234566666665543 899999987777776666666777641112221        11 3


Q ss_pred             HHHHHHHhcCCCEEEEeCCCH--------HHHHHHHHHHHcC-CCEEEecC
Q 020079          274 RAIRLAEFVNTPLYVVHVMSM--------DAMEEIAKARKAG-PNFLNTTI  315 (331)
Q Consensus       274 ~~~~l~~~~g~~~~i~H~~~~--------~~~~~i~~~~~~G-i~v~~~~~  315 (331)
                      +.++.+++.|+.+.++.....        .....++.+.++| +++...+.
T Consensus       229 ~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgsD  279 (359)
T cd01309         229 KLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSD  279 (359)
T ss_pred             HHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHcCCceEEEECC
Confidence            455666777877655543221        2345567777887 98887653

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK06886 hypothetical protein; Validated

Probab=99.30  E-value=1.7e-10  Score=104.55  Aligned_cols=202  Identities=15%  Similarity=0.106  Sum_probs=117.7

Q ss_pred             ccccccccccCCCCCC-------------------------CChhhHH----HHHHHHHhCCceEEecCcCCCCC---cH
Q 020079          106 GGIDPHTHLAMEFMGS-------------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SL  153 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~-------------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~---~~  153 (331)
                      ||||.|+|++..+...                         .+.++++    ...+.++++|+|.++.+....+.   ..
T Consensus        21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~  100 (329)
T PRK06886         21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRA  100 (329)
T ss_pred             CCccccccccccccCCCccccccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccH
Confidence            8999999998853110                         1222332    23455788999999966544321   34


Q ss_pred             HHHHHHHHHHhcc-ce---eeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHH
Q 020079          154 TAGFEAYEKKAKN-SC---MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKS  226 (331)
Q Consensus       154 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~  226 (331)
                      .+.+...++.... ..   +.++..+ ...  ....+.+.+.. +. ++.+...  |..   ....+++.++.+++.|++
T Consensus       101 ~~a~~~~r~~~~~~idlq~vafPq~g-~~~--~~~~~l~~~al-~~-advvGGi--P~~~~~~~~~~~e~l~~~~~lA~~  173 (329)
T PRK06886        101 IIAAHKAREVYKHDIILKFANQTLKG-VIE--PTAKKWFDIGS-EM-VDMIGGL--PYRDELDYGRGLEAMDILLDTAKS  173 (329)
T ss_pred             HHHHHHHHHHhcCcceEEEEecChhh-ccC--ccHHHHHHHHH-Hh-CCEEeCc--cCCcCCCCCCCHHHHHHHHHHHHH
Confidence            4455555444432 22   2232222 221  22234444444 22 4444322  222   234568999999999999


Q ss_pred             cCCcEEEEc-CCchhhHHHH----HHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------
Q 020079          227 LGALAMVHA-ENGDAVFEGQ----KRMIELGITGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------  293 (331)
Q Consensus       227 ~g~~v~~H~-e~~~~~~~~~----~~~~~~G~~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------  293 (331)
                      +|+++++|+ |..+......    +...+.|+.++-  .|+...... +.....+.+++.++.|+.+..++.++      
T Consensus       174 ~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L~~~-~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~  252 (329)
T PRK06886        174 LGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHGISIGAH-SKEYRYRLYQKMREADMMVIACPMAWIDSNRK  252 (329)
T ss_pred             cCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEeccccCc-ChhhHHHHHHHHHHcCCeEEECchhhhhhccc
Confidence            999999997 5443322333    334488887753  233322222 22446677888998888754444321      


Q ss_pred             ------HHHHHHHHHHHHcCCCEEEecC
Q 020079          294 ------MDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       294 ------~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                            ..++..+++++++|++|+.++.
T Consensus       253 ~~~~p~~rGv~pv~eL~~aGV~V~lGtD  280 (329)
T PRK06886        253 EDLMPFHNALTPADEMIPEGITVALGTD  280 (329)
T ss_pred             cccCcCCCCCCCHHHHHHCCCeEEEecC
Confidence                  3457789999999999998764

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.19  E-value=3.7e-10  Score=99.72  Aligned_cols=130  Identities=22%  Similarity=0.227  Sum_probs=71.2

Q ss_pred             cccccccccCCCCCC------------CC----hhhHHHHHHHHHhCCceEEecCcCCCCC-----cHHHHHHHHHHH-h
Q 020079          107 GIDPHTHLAMEFMGS------------ET----IDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKK-A  164 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~------------~~----~~~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~-~  164 (331)
                      |||+|+|+.++....            .+    .+......+.++++||||+.++......     ......+...+. +
T Consensus         1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (275)
T cd01292           1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG   80 (275)
T ss_pred             CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence            799999988752111            11    2234455677899999999998755432     122222222222 1


Q ss_pred             ccceeeccccccccCC----ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079          165 KNSCMDYGFHMAITKW----DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG  238 (331)
Q Consensus       165 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~  238 (331)
                      .+..+....+......    .+...+.+.+.. +.|+.+++....... ...+.+.++++++.|+++|+++.+|+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~i~~H~~~~  156 (275)
T cd01292          81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGL-ELGAVGLKLAGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGEL  156 (275)
T ss_pred             eeeEEeccCCCCccccchhHHHHHHHHHHHHH-hcCCeeEeeCCCCCC-CCCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence            1211111111111000    112233333333 246777776543321 12478999999999999999999998543

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.

>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]

Probab=99.06  E-value=4.5e-09  Score=94.15  Aligned_cols=64  Identities=41%  Similarity=0.661  Sum_probs=52.1

Q ss_pred             CccEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC
Q 020079           52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~  117 (331)
                      +..++|+|+.++|+-.   -+..+|.|+||||+.-.+-.  ...+++||+.|+++|||=||.|+|+..+
T Consensus         2 ~~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~--~~~aKVIDA~gklvm~GGvD~HsHvAG~   68 (575)
T COG1229           2 AMEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVS--ESKAKVIDASGKLVMPGGVDSHSHVAGA   68 (575)
T ss_pred             CceEEeecCEEecCccCCCCceeeEEeecCeEeeecccc--cccceEEeccCcEEecCccccccccccc
Confidence            4569999999999763   36789999999998743211  1247999999999999999999999874

>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []

Probab=98.76  E-value=3.6e-08  Score=90.07  Aligned_cols=135  Identities=22%  Similarity=0.250  Sum_probs=73.8

Q ss_pred             eeecccccccccccCCCCCCC-------ChhhHHHHHHHHHhCCceEEecCcCCCCCcH---HHHHHHHHHHhccc----
Q 020079          102 FVMPGGIDPHTHLAMEFMGSE-------TIDDFFSGQAAALAGGTTMHIDFVIPINGSL---TAGFEAYEKKAKNS----  167 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~~~~-------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~---~~~~~~~~~~~~~~----  167 (331)
                      +|+|||||+|+|+.++  ...       ..+.+....+.++++||||++|+........   ..............    
T Consensus         1 ~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (333)
T PF01979_consen    1 YVMPGLIDAHVHGGQG--GLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIELRNEIMEGLAAAPKIEPAM   78 (333)
T ss_dssp             EEEE-EEEEEEEGGGT--THTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CEEcChhHHhhCcCCc--CccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCccccccccccccccccchhhhccc
Confidence            6899999999999987  323       2344566778889999999999843332211   11111111111110    


Q ss_pred             -ee---eccccccccCCChh---------hHHHHHHHHHHhCCC-----eEEEEEecCCCCcCCHHHHHHHHHHHHH---
Q 020079          168 -CM---DYGFHMAITKWDEV---------VSDEMEVMVKEKGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKS---  226 (331)
Q Consensus       168 -~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~A~~---  226 (331)
                       .+   ....+........+         ...++.+.....+..     .+.....+.....++.+.++..++.+++   
T Consensus        79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  158 (333)
T PF01979_consen   79 TLLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLA  158 (333)
T ss_dssp             EEEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHH
Confidence             11   01110000000000         011222333233222     3344556667778899999999999998   


Q ss_pred             --c-CCcEEEEcCCc
Q 020079          227 --L-GALAMVHAENG  238 (331)
Q Consensus       227 --~-g~~v~~H~e~~  238 (331)
                        . ++++++|+.+.
T Consensus       159 ~~~~~~~~~~h~~~~  173 (333)
T PF01979_consen  159 AEKLGIPVHIHVAEG  173 (333)
T ss_dssp             HHHHTHEEEEEESSS
T ss_pred             HHhhcccceeeeccC
Confidence              4 99999997443

The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....

>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex

Probab=98.69  E-value=6.5e-07  Score=81.14  Aligned_cols=196  Identities=17%  Similarity=0.089  Sum_probs=111.1

Q ss_pred             ecccccccccccCCC----CCCCC--hhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHh--ccc
Q 020079          104 MPGGIDPHTHLAMEF----MGSET--IDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNS  167 (331)
Q Consensus       104 ~PG~ID~H~H~~~~~----~~~~~--~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~--~~~  167 (331)
                      +|||||+|+--....    .+-..  ...+....+.++++||||++|.-..+..        .....++......  ...
T Consensus         1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (325)
T cd01306           1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL   80 (325)
T ss_pred             CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence            699999999754421    11111  2233444567889999999976433311        1222233332222  234


Q ss_pred             eeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC-----------------------------------CCcC
Q 020079          168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG-----------------------------------SFMI  212 (331)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~-----------------------------------~~~~  212 (331)
                      ..+..++..+.....+..+.+..+.+...+..+.+.-...+                                   ....
T Consensus        81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (325)
T cd01306          81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY  160 (325)
T ss_pred             hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence            45555666665555666677777764444554433211100                                   0113


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcC-CchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      +.+.++++++.|+++|+++.+|+. ..+.+    +...+.|....+.     |      ...+.++.+.+.|..+....-
T Consensus       161 ~~~~~~~iv~~A~~~gl~vasH~d~~~~~v----~~a~~~Gv~~~E~-----p------~t~e~a~~a~~~G~~vv~gap  225 (325)
T cd01306         161 APANRSELAALARARGIPLASHDDDTPEHV----AEAHELGVVISEF-----P------TTLEAAKAARELGLQTLMGAP  225 (325)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEecCCChHHH----HHHHHCCCeeccC-----C------CCHHHHHHHHHCCCEEEecCc
Confidence            467889999999999999999984 33333    3445567765432     2      123345677777877654321


Q ss_pred             -----CCHHHHHHHHHHHHcCCCEEEec
Q 020079          292 -----MSMDAMEEIAKARKAGPNFLNTT  314 (331)
Q Consensus       292 -----~~~~~~~~i~~~~~~Gi~v~~~~  314 (331)
                           .+......++++.+.|+.+..++
T Consensus       226 n~lrg~s~~g~~~~~~ll~~Gv~~al~S  253 (325)
T cd01306         226 NVVRGGSHSGNVSARELAAHGLLDILSS  253 (325)
T ss_pred             ccccCccccccHhHHHHHHCCCeEEEEc
Confidence                 11122345778888998776544

C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.

>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F

Probab=98.68  E-value=3.5e-07  Score=81.57  Aligned_cols=127  Identities=27%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             eCCCCeeeccccccccc--ccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccc
Q 020079           97 DATGKFVMPGGIDPHTH--LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH  174 (331)
Q Consensus        97 d~~g~~v~PG~ID~H~H--~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (331)
                      |++|++|+|||||+|+|  ......+....+......+..+.+|+|++++.....   .......... .    ....  
T Consensus         1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~~~~---~~~~~~~~~~-~----~~~~--   70 (304)
T PF13147_consen    1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMPGTN---PEELNRARRR-G----AGYP--   70 (304)
T ss_dssp             E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESSSSS---HHHHHHHHHH-E----SEEE--
T ss_pred             CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCCCCC---chhhHHHHhh-c----cccc--
Confidence            89999999999999999  333322223334455667788999999999843222   2222222221 1    0000  


Q ss_pred             ccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC-CcEEEEcC
Q 020079          175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAE  236 (331)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~e  236 (331)
                      ................+.+.......+....+.   ....+.+.+..+.+++.+ +++..|+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (304)
T PF13147_consen   71 GSGAGPRGTTIEELEALVDLIAAEGVGFVAAYN---GIEGPGLQAAIRAAHRAGVIKVVGHSP  130 (304)
T ss_dssp             EECESCCHHHHHHHHHHHHHHHHTEEEEESSST---HHHHHHHHHHHHHHHHHTHEEEEEECH
T ss_pred             cccccccccchHHHHHHHHHHhhcCcceeeccc---cCCHHHHHHHHHHHHhcCCeeeecccc
Confidence            001111122223333333222223333322111   345677888888999999 55555554

...

>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria

Probab=98.62  E-value=1.1e-07  Score=72.45  Aligned_cols=136  Identities=24%  Similarity=0.285  Sum_probs=82.3

Q ss_pred             CCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC
Q 020079          100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK  179 (331)
Q Consensus       100 g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (331)
                      ||+++|||||.|+|+..+  |....+....           |+..|+...+..                      .+++.
T Consensus         1 ~kli~~g~vd~hVhlrep--g~~~keti~t-----------T~~ampnt~paP----------------------a~itv   45 (142)
T PF12890_consen    1 GKLILPGLVDVHVHLREP--GFEAKETIET-----------TWCAMPNTFPAP----------------------AGITV   45 (142)
T ss_pred             Cceeehhhhhhhhhhhcc--cchhhhhhhc-----------eeeecCccCCCC----------------------cceee
Confidence            689999999999999988  6555444422           555554332211                      00100


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHH----HHHHHcCCCC
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITG  255 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~----~~~~~~G~~~  255 (331)
                        +           +.|...+  .++..+........+.+.++. .+.+.++..|||+......+.    +.-.+.|+. 
T Consensus        46 --~-----------~~~~e~~--afsddg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g~~-  108 (142)
T PF12890_consen   46 --E-----------DDGEEAF--AFSDDGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLGVY-  108 (142)
T ss_pred             --e-----------ecCcceE--EEecCCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhCCc-
Confidence              0           1111222  223333333345666777777 889999999998875443332    223333420 


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM  294 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~  294 (331)
                             .+-.-|...+.+++.+++..|..+|++|.++.
T Consensus       109 -------L~G~cEs~~~~rd~lLak~~g~~yhVchvstk  140 (142)
T PF12890_consen  109 -------LKGNCESVQCARDVLLAKATGCHYHVCHVSTK  140 (142)
T ss_pred             -------CCCcchHHHHHHHHHhhhccCCcEEEEEEecc
Confidence                   11134667888999999999999999999864

>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]

Probab=98.58  E-value=2e-06  Score=75.08  Aligned_cols=174  Identities=18%  Similarity=0.106  Sum_probs=102.4

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCC--Chh
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW--DEV  183 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  183 (331)
                      -|||+|+|+...    ...++.......+...||+-+...+....  .......+.+..+..+...++|... ..  .++
T Consensus         2 ~liDtH~HL~~~----~~~~d~~~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~   74 (256)
T COG0084           2 MLIDTHCHLDFE----EFDEDRDEVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLD-ADEHSEE   74 (256)
T ss_pred             ccEEeeeCCCch----hhcCCHHHHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCc-cccccHH
Confidence            379999999863    23344444566778899998886543221  2222333334444555566666443 22  255


Q ss_pred             hHHHHHHHHHH-hCCCeEEEE-EecCCCCc----CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079          184 VSDEMEVMVKE-KGINSFKFF-MAYKGSFM----INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE  257 (331)
Q Consensus       184 ~~~~~~~~~~~-~g~~~ik~~-~~~~~~~~----~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~  257 (331)
                      .++.+.+++.. ..+..|... +++.-...    ...+.|++-++.|+++++|+.+|+.+..+                 
T Consensus        75 ~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~-----------------  137 (256)
T COG0084          75 DLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHE-----------------  137 (256)
T ss_pred             HHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHH-----------------
Confidence            66777777742 344444331 22221111    13567889999999999999999865322                 


Q ss_pred             cccccCChHHHHHHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCcccc
Q 020079          258 GHALSRPPLLEGEATTRAIRLAEFVNT-PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDS  320 (331)
Q Consensus       258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~-~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~  320 (331)
                                      +.++++++.+. .--+.||-+++. +.++++.+.|..+++..+...-.
T Consensus       138 ----------------d~~~iL~~~~~~~~gi~HcFsGs~-e~a~~~~d~G~yisisG~itfk~  184 (256)
T COG0084         138 ----------------DTLEILKEEGAPVGGVLHCFSGSA-EEARKLLDLGFYISISGIVTFKN  184 (256)
T ss_pred             ----------------HHHHHHHhcCCCCCEEEEccCCCH-HHHHHHHHcCeEEEECceeecCC
Confidence                            12233444441 334778855544 78888888888777655544433

>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]

Probab=98.53  E-value=8.4e-07  Score=74.51  Aligned_cols=193  Identities=14%  Similarity=0.039  Sum_probs=115.6

Q ss_pred             eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccccccccC
Q 020079          102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAITK  179 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (331)
                      +-+|+.-|+|+|+.+..  .     ..........+||.-..-|.+..+.  ...+.+...+... .....-.+-+...-
T Consensus         5 l~i~~~~DmHvHlR~g~--m-----l~aVvP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~-kL~skttfLMslYL   76 (344)
T KOG2902|consen    5 LTITQPDDMHVHLRDGD--M-----LHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIM-KLPSKTTFLMSLYL   76 (344)
T ss_pred             EecCCccceeEEeccCC--e-----eeeeccccccCceeEEEEcCCCCCCcchHHHHHHHHHHHH-hcCccceeEEEEee
Confidence            34688999999998751  1     0011122356889988888765554  3333333322221 11111111111222


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecCCC---CcCC--HHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMIN--DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~---~~~~--~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      ..+...+++.+..++.++.++|.|..+...   ..++  -..+..+++...+.|+++.+|-|-+...+.           
T Consensus        77 s~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~-----------  145 (344)
T KOG2902|consen   77 SDKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDG-----------  145 (344)
T ss_pred             cCCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCC-----------
Confidence            223345667777755677899988654211   1112  345667888999999999999876543321           


Q ss_pred             CcccccccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          255 GPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                          |    .-.+|...+...+++..+. ..++.+.||++.++++.++.++  +..|...+++||+.++.
T Consensus       146 ----~----Vf~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a~--~~sVaaTvTahHL~Lt~  205 (344)
T KOG2902|consen  146 ----H----VFDAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESAK--EGSVAATVTAHHLLLTR  205 (344)
T ss_pred             ----c----eecchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhhc--CCceeeEeehheeEEeh
Confidence                0    1122334455566666555 5788899999999888887765  66788889999988753

>PRK10812 putative DNAse; Provisional

Probab=98.51  E-value=2.1e-06  Score=75.85  Aligned_cols=127  Identities=15%  Similarity=0.150  Sum_probs=69.1

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD  186 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (331)
                      +||+|+|+...... ...++.....+.+...||..++..+... .+... .....+..+.....+++|..... .+..++
T Consensus         3 ~iDtH~Hl~~~~~~-~~~~d~~~vl~~a~~~gv~~~~~~~~~~-~~~~~-~~~l~~~~~~v~~~~GiHP~~~~-~~~~~~   78 (265)
T PRK10812          3 LVDSHCHLDGLDYQ-SLHKDVDDVLAKAAARDVKFCLAVATTL-PGYRH-MRDLVGERDNVVFSCGVHPLNQD-EPYDVE   78 (265)
T ss_pred             eEEeccCCCCccch-hhhcCHHHHHHHHHHcCCCEEEEeCCCH-HHHHH-HHHHHhhCCCeEEEEEeCCCCCC-ChhHHH
Confidence            79999999742000 1123444556777889998877544211 11222 22222222334445555543222 233456


Q ss_pred             HHHHHHHHhCCCeE-EEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          187 EMEVMVKEKGINSF-KFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       187 ~~~~~~~~~g~~~i-k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .+.++.+...+.+| .+.+++..   ......+.|++.++.|+++++|+.+|+.+
T Consensus        79 ~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~  133 (265)
T PRK10812         79 ELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRD  133 (265)
T ss_pred             HHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence            66666533334445 23333321   11223567889999999999999999854

>cd01310 TatD_DNAse TatD like proteins; E

Probab=98.49  E-value=4e-06  Score=73.46  Aligned_cols=125  Identities=18%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  185 (331)
                      ++|+|+|+...  ..  ..+.....+.+..+||++++.+....  ...+.+....+...+.....+++.... ...++..
T Consensus         1 ~~D~H~H~~~~--~~--~~~~~~~l~~~~~~gv~~~v~~~~~~--~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~~~~~   74 (251)
T cd01310           1 LIDTHCHLDFP--QF--DADRDDVLARAREAGVIKIIVVGTDL--KSSKRALELAKKYDNVYAAVGLHPHDADEHVDEDL   74 (251)
T ss_pred             CEEeeeCCCch--hh--ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCeEEEEeeCcchhhcCCHHHH
Confidence            68999999754  11  12333445666788999988775432  112222222222222222233332111 1112345


Q ss_pred             HHHHHHHHHhCCCeEE-EEEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++++++.+..+..+++ +.++.....   ....+.++.+++.|+++++|+.+|+..
T Consensus        75 ~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~  130 (251)
T cd01310          75 DLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRD  130 (251)
T ss_pred             HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence            6666665334555553 222222111   134577899999999999999999854

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=2.6e-07  Score=78.79  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=66.7

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCC--CCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhH----
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----  127 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~--~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~----  127 (331)
                      -+.+.|++|+........++||+||||..-.+-  .+.......|||.|+++.|||||.....+....-....+++    
T Consensus        13 llQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGv   92 (407)
T KOG3892|consen   13 LLQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFEERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGV   92 (407)
T ss_pred             eeeeeeeEEeeCCceeehheeEeCCeecCcccccceeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhH
Confidence            367899999988888888999999999864431  11222457899999999999999999877652111223333    


Q ss_pred             HHHHHHHHhCCceEEec
Q 020079          128 FSGQAAALAGGTTMHID  144 (331)
Q Consensus       128 ~~~~~~~l~~GvTtv~d  144 (331)
                      ...++..+++|||++.-
T Consensus        93 AlVAr~ll~hGvtsf~P  109 (407)
T KOG3892|consen   93 ALVARQLLSHGVTSFCP  109 (407)
T ss_pred             HHHHHHHHhcCCCcCCC
Confidence            34467789999999874

>TIGR00010 hydrolase, TatD family

Probab=98.47  E-value=3.7e-06  Score=73.78  Aligned_cols=125  Identities=18%  Similarity=0.147  Sum_probs=65.3

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCC-ChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-DEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  185 (331)
                      |||+|+|+...  ...  ++.....+.+...|+++++++.... ... +.+....+..++.....+++...... ..+..
T Consensus         1 ~iD~H~Hl~~~--~~~--~~~~~~~~~~~~~Gv~~~v~~~~~~-~~~-~~~~~~~~~~~~i~~~~GihP~~~~~~~~~~~   74 (252)
T TIGR00010         1 LIDAHCHLDFL--DFE--EDVEEVIERAKAAGVTAVVAVGTDL-EDF-LRALELAEKYPNVYAAVGVHPLDVDDDTKEDI   74 (252)
T ss_pred             CEEeccCCCCh--hhc--cCHHHHHHHHHHcCCCEEEEecCCH-HHH-HHHHHHHHHCCCEEEEEEeCcchhhcCCHHHH
Confidence            68999998754  111  1333346667789999998765331 111 22222222222323333333211111 12344


Q ss_pred             HHHHHHHHHhCCCeEEEE-EecCCCCcC---CHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGINSFKFF-MAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~~-~~~~~~~~~---~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +++++.++..+..++... +++......   ..+.+++.++.|+++|+|+.+|+..
T Consensus        75 ~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~  130 (252)
T TIGR00010        75 KELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD  130 (252)
T ss_pred             HHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence            556555533344445332 222211110   2478889999999999999999853

Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.

>PRK10425 DNase TatD; Provisional

Probab=98.37  E-value=8.2e-06  Score=71.83  Aligned_cols=124  Identities=10%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  185 (331)
                      |||+|+|+...  .  ..++.....+.+...||..+...+... ..... .....+..+.....+++|.... ...++..
T Consensus         1 ~iDtH~HL~~~--~--~~~d~~~vl~~a~~~gv~~~i~~~~~~-~~~~~-~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~   74 (258)
T PRK10425          1 MFDIGVNLTSS--Q--FAKDRDDVVARAFAAGVNGMLITGTNL-RESQQ-AQKLARQYPSCWSTAGVHPHDSSQWQAATE   74 (258)
T ss_pred             CEEeeeCcCCh--h--hhccHHHHHHHHHHCCCCEEEEeCCCH-HHHHH-HHHHHHhCCCEEEEEEeCcCccccCCHHHH
Confidence            68999999753  1  124455556777888998877554321 12222 2222223333444555554322 2224445


Q ss_pred             HHHHHHHHHhCCCeEE-EEEecCCC---CcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          186 DEMEVMVKEKGINSFK-FFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik-~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      +.+.++.+...+.+|. +.+++...   .....+.|++.++.|+++++|+.+|+.
T Consensus        75 ~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r  129 (258)
T PRK10425         75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCR  129 (258)
T ss_pred             HHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            5566555222223333 22333211   111246788999999999999999985

>PRK11449 putative deoxyribonuclease YjjV; Provisional

Probab=98.36  E-value=2.5e-05  Score=68.83  Aligned_cols=128  Identities=17%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             ecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCCh
Q 020079          104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDE  182 (331)
Q Consensus       104 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  182 (331)
                      .+.+||+|+|+...    ...++.......+...||+.++.++... .+....+ ...+..+.....+++|.... ...+
T Consensus         2 ~~~~iD~HcHl~~~----~~~~~~~~~l~~a~~~gv~~~~~~~~~~-~~~~~~~-~l~~~~~~v~~~~GiHP~~~~~~~~   75 (258)
T PRK11449          2 ICRFIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEA-ENFARVL-ALAERYQPLYAALGLHPGMLEKHSD   75 (258)
T ss_pred             CceEEEeccCCCCh----hhccCHHHHHHHHHHCCCCEEEEeeCCH-HHHHHHH-HHHHhCCCEEEEEeeCcCccccCCH
Confidence            35689999999753    1122344445667788999888654311 1222222 22223333444455554332 2233


Q ss_pred             hhHHHHHHHHHHh--CCCeEEE-EEecCCC---CcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          183 VVSDEMEVMVKEK--GINSFKF-FMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       183 ~~~~~~~~~~~~~--g~~~ik~-~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +..+.+.++.+..  .+.+|.. .+++...   .....+.|++.++.|+++++|+.+|+.+
T Consensus        76 ~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~  136 (258)
T PRK11449         76 VSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR  136 (258)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence            4455666555222  2233322 1221111   1123567889999999999999999864

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon

Probab=98.35  E-value=2e-05  Score=70.89  Aligned_cols=207  Identities=16%  Similarity=0.101  Sum_probs=102.4

Q ss_pred             ccccccccccCCCCCC---------CC---hhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecc
Q 020079          106 GGIDPHTHLAMEFMGS---------ET---IDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~---------~~---~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (331)
                      |++.+|=|+...+.+.         ..   .+......+.+.++|||+++|.+..... ......+..++.+.+.....+
T Consensus         1 g~~~~heh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G   80 (293)
T cd00530           1 GVTLTHEHLIIDSSGFVRDPPEVDDFDLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATG   80 (293)
T ss_pred             CcccccCCeeecChhhccCcccccccchhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecc
Confidence            6788888886543211         11   1223344566788999999998754222 333333333333323344444


Q ss_pred             ccccccC------CC-hhhHHHHHHHHHH----hCC--CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc-
Q 020079          173 FHMAITK------WD-EVVSDEMEVMVKE----KGI--NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-  238 (331)
Q Consensus       173 ~~~~~~~------~~-~~~~~~~~~~~~~----~g~--~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~-  238 (331)
                      ++.....      .. ++..+.+.+....    .++  ..++....+........+.|++.++.|++.|+|+++|+.+. 
T Consensus        81 ~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~  160 (293)
T cd00530          81 FYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGL  160 (293)
T ss_pred             cCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCc
Confidence            4432110      11 1111111111111    121  12433322222223345678899999999999999998643 


Q ss_pred             hhhHHHHHHHHHcCCCCcc---cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH---------HHHHHHHHHHHc
Q 020079          239 DAVFEGQKRMIELGITGPE---GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM---------DAMEEIAKARKA  306 (331)
Q Consensus       239 ~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~---------~~~~~i~~~~~~  306 (331)
                      .......+.+.+.|.....   .|+....   ..    +.+..+.+.|+-+.+.+..+.         ...+.++++.+.
T Consensus       161 ~~~~~~l~~l~~~g~~~~~~vi~H~~~~~---~~----~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (293)
T cd00530         161 TMGLEQLRILEEEGVDPSKVVIGHLDRND---DP----DYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDE  233 (293)
T ss_pred             cccHHHHHHHHHcCCChhheEEeCCCCCC---CH----HHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHC
Confidence            2333444556666664322   2222111   01    123333445766555554322         244567777777


Q ss_pred             CC--CEEEecCCccc
Q 020079          307 GP--NFLNTTIPLCD  319 (331)
Q Consensus       307 Gi--~v~~~~~p~~~  319 (331)
                      |.  ++.++|.-++.
T Consensus       234 ~~~d~ill~TD~p~~  248 (293)
T cd00530         234 GYGDRLLLSHDVFRK  248 (293)
T ss_pred             CCcCCEEEeCCcCch
Confidence            75  56777765554

PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.

>PRK09358 adenosine deaminase; Provisional

Probab=98.30  E-value=5.1e-05  Score=69.82  Aligned_cols=112  Identities=16%  Similarity=0.082  Sum_probs=68.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ..+.+.++++++.|+++|+++++|+..........+.+...|... -.|+.....      -++.++++++.|+.+.+|.
T Consensus       178 ~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~r-i~Hg~~l~~------~~~~~~~l~~~gi~v~~cP  250 (340)
T PRK09358        178 GFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAER-IGHGVRAIE------DPALMARLADRRIPLEVCP  250 (340)
T ss_pred             CCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcc-cchhhhhcc------CHHHHHHHHHcCCeEEECC
Confidence            457889999999999999999999842221222222333345432 233322110      1345677888888766666


Q ss_pred             CCCH---H----HHHHHHHHHHcCCCEEEecCCccccchhhhhhhc
Q 020079          291 VMSM---D----AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVE  329 (331)
Q Consensus       291 ~~~~---~----~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~~  329 (331)
                      .|+.   .    ...+++++.++|++|+.+|.--..+...+.+.|.
T Consensus       251 ~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~e~~  296 (340)
T PRK09358        251 TSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVFGTTLTEEYE  296 (340)
T ss_pred             CccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHH
Confidence            5541   1    3468999999999999887633223345555554

>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition

Probab=98.23  E-value=1.7e-05  Score=69.86  Aligned_cols=124  Identities=15%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc-ceeeccccccccCC-ChhhH
Q 020079          108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVS  185 (331)
Q Consensus       108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~  185 (331)
                      ||+|+|+...  .  ..++.....+.+...|++.++.+..... ... .........+. ....+++|...... .++..
T Consensus         1 iD~H~Hl~~~--~--~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~-~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~   74 (255)
T PF01026_consen    1 IDAHCHLDSP--R--FEEDRPEVLERAREAGVSAIIIVSTDPE-DWE-RVLELASQYPDRVYPALGIHPWEAHEVNEEDL   74 (255)
T ss_dssp             EEEEE-TTSG--G--GTTTHHHHHHHHHHTTEEEEEEEESSHH-HHH-HHHHHHHHTTTEEEEEE---GGGGGGHSHHHH
T ss_pred             CcCccCCCCh--h--hCcCHHHHHHHHHHcCCCEEEEcCCCHH-HhH-HHHHHHhcCCCeEEEEecCCcchhhhhhHHHH
Confidence            7999999863  1  1233444567788999999875543221 222 22222222222 45555655433222 34445


Q ss_pred             HHHHHH--HHHhCCCeEEE-EEecCCCC----cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVM--VKEKGINSFKF-FMAYKGSF----MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~--~~~~g~~~ik~-~~~~~~~~----~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +.+.++  .....+.+|.. .+++....    ....+.|++.++.|+++++|+.+|+..
T Consensus        75 ~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~  133 (255)
T PF01026_consen   75 EELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRK  133 (255)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred             HHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC
Confidence            666666  32334445533 34441111    123567889999999999999999865

; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....

>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]

Probab=98.16  E-value=0.00013  Score=63.72  Aligned_cols=189  Identities=18%  Similarity=0.138  Sum_probs=103.2

Q ss_pred             eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceee--ccccccc
Q 020079          102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMD--YGFHMAI  177 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~  177 (331)
                      +-+..-.|.|+|+...       +.+...... .+-++.-.+-|.+..+.  +..+.+...++.....+..  +-.-+..
T Consensus         5 l~i~rPdDwHlHLRdg-------~mL~~V~p~-ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtl   76 (344)
T COG0418           5 LTIRRPDDWHLHLRDG-------AMLKAVVPY-TSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTL   76 (344)
T ss_pred             eeccCccceeEEecCc-------cHHHHhhhh-hhhhcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEE
Confidence            3456678999999875       111111111 12255555556554444  3333333322222111111  1111111


Q ss_pred             cCCChhhHHHHHHHHHHhC-CCeEEEEEecCCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079          178 TKWDEVVSDEMEVMVKEKG-INSFKFFMAYKGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG  252 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g-~~~ik~~~~~~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G  252 (331)
                      .-.++...+++++.. +.| +.++|.|..+...    -..+-+.+..+++..++.|+++.+|.|........        
T Consensus        77 YLtd~~~peel~~a~-~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDi--------  147 (344)
T COG0418          77 YLTDSTTPEELEEAK-AKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDI--------  147 (344)
T ss_pred             EecCCCCHHHHHHHH-hcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccc--------
Confidence            112223456777766 444 7788998754211    12246778889999999999999998654322111        


Q ss_pred             CCCcccccccCChHHHHHHHHHHH-HHHHh-cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAI-RLAEF-VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~-~l~~~-~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                       ..           .|...++..+ .+... ...++.+.|+++.++.+.+   ++.+-|+++..+|||+.+.
T Consensus       148 -fd-----------rE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v---~~~~~nlaATIT~hHL~~n  204 (344)
T COG0418         148 -FD-----------REAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYV---KDANNNLAATITPHHLLLN  204 (344)
T ss_pred             -hh-----------hHHHHHHHHHHHHHhhCCcceEEEEEeccHHHHHHH---HhcCcceeeEeehhheeee
Confidence             00           1112222222 22222 2578999999998885555   4557779999999998764

>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]

Probab=98.15  E-value=4.8e-05  Score=63.45  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe----cCcCCCCC-cHHHHHHHHH--------HHhccceeeccc
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI----DFVIPING-SLTAGFEAYE--------KKAKNSCMDYGF  173 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~----d~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~  173 (331)
                      +||+|+|++..     ..+++.    .+..+||.+++    |.....+. ...+-++...        +.+.+..+..+.
T Consensus         2 ~iD~HiH~d~r-----~~eDle----kMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv   72 (254)
T COG1099           2 YIDSHIHLDVR-----GFEDLE----KMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV   72 (254)
T ss_pred             ccccccccccc-----cHHHHH----HHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence            69999999764     234443    33445555544    44322221 1111111111        112223344444


Q ss_pred             cccccCC-ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          174 HMAITKW-DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       174 ~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      +...... -++.+.++..+....++..|... +.........+.|+..+++|+++++|+.+|..
T Consensus        73 HPr~iP~e~~~~l~~L~~~l~~e~VvAiGEi-GLe~~t~~E~evf~~QL~LA~e~dvPviVHTP  135 (254)
T COG1099          73 HPRAIPPELEEVLEELEELLSNEDVVAIGEI-GLEEATDEEKEVFREQLELARELDVPVIVHTP  135 (254)
T ss_pred             CCCCCCchHHHHHHHHHhhcccCCeeEeeec-ccccCCHHHHHHHHHHHHHHHHcCCcEEEeCC
Confidence            4332221 23345556555533344455332 11111112345688999999999999999963

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively

Probab=98.15  E-value=0.00017  Score=65.99  Aligned_cols=97  Identities=19%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      .+.+.++.+++.|+++|+++++|+..........+.+...|... -.|+....      .-++.++++++.|+.+.++..
T Consensus       170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~-i~H~~~l~------~~~~~~~~l~~~gi~v~~~P~  242 (325)
T cd01320         170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAER-IGHGIRAI------EDPELVKRLAERNIPLEVCPT  242 (325)
T ss_pred             CCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcc-cchhhccC------ccHHHHHHHHHcCCeEEECCC
Confidence            47899999999999999999999733222222233344455432 23332211      012456778888887666654


Q ss_pred             CCH---H----HHHHHHHHHHcCCCEEEecC
Q 020079          292 MSM---D----AMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       292 ~~~---~----~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ++.   .    ....++++.++|++|+.++.
T Consensus       243 sn~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD  273 (325)
T cd01320         243 SNVQTGAVKSLAEHPLRELLDAGVKVTINTD  273 (325)
T ss_pred             ccccccccCCcccChHHHHHHCCCEEEECCC
Confidence            432   1    14679999999999998774

ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.

>TIGR01430 aden_deam adenosine deaminase

Probab=98.13  E-value=0.00013  Score=66.74  Aligned_cols=98  Identities=17%  Similarity=0.114  Sum_probs=63.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ..+.+.++.+++.|+++|+++++|+............+...|... -.|+.....      -.+.++++++.|+.+.+|.
T Consensus       168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~r-i~Hg~~l~~------~~~~i~~l~~~gi~v~~cP  240 (324)
T TIGR01430       168 GGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATR-IGHGVRALE------DPELLKRLAQENITLEVCP  240 (324)
T ss_pred             CCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchh-cchhhhhcc------CHHHHHHHHHcCceEEECC
Confidence            456889999999999999999999742211112223334455532 233322110      1346788888888766666


Q ss_pred             CCCH-------HHHHHHHHHHHcCCCEEEecC
Q 020079          291 VMSM-------DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       291 ~~~~-------~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .++.       ....+++++.++|++|+.+|.
T Consensus       241 ~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD  272 (324)
T TIGR01430       241 TSNVALGVVKSLAEHPLRRFLEAGVKVTLNSD  272 (324)
T ss_pred             cccccccccCCcccChHHHHHHCCCEEEECCC
Confidence            5542       125689999999999998775

This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.

>PRK09875 putative hydrolase; Provisional

Probab=98.04  E-value=0.00028  Score=63.12  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=71.3

Q ss_pred             ccccccccccCCCCCC--------CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHH-hccceeecccccc
Q 020079          106 GGIDPHTHLAMEFMGS--------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AKNSCMDYGFHMA  176 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--------~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  176 (331)
                      |+..+|=|+...+.+.        ...+......+...+.|+.|++|+....-+.....+....+. +-+....-+++..
T Consensus         7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~   86 (292)
T PRK09875          7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD   86 (292)
T ss_pred             CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCC
Confidence            8889999986542111        112223344455677899999998765544333333333222 2222222222211


Q ss_pred             cc------C-CChhhHHHHHHHHHHhCC-------CeE-EEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          177 IT------K-WDEVVSDEMEVMVKEKGI-------NSF-KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       177 ~~------~-~~~~~~~~~~~~~~~~g~-------~~i-k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                      ..      . ..++..+.+.+-+ ..|.       ..| ++..++........+.|+++...+++.|.|+.+|.......
T Consensus        87 ~~~p~~~~~~~~e~la~~~i~ei-~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g  165 (292)
T PRK09875         87 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG  165 (292)
T ss_pred             ccCCHHHhcCCHHHHHHHHHHHH-HHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccch
Confidence            10      0 1122222222222 1222       224 22222221122234567888888899999999996433222


Q ss_pred             HHHHHHHHHcCCCC
Q 020079          242 FEGQKRMIELGITG  255 (331)
Q Consensus       242 ~~~~~~~~~~G~~~  255 (331)
                      .+..+.+.+.|+.-
T Consensus       166 ~e~l~il~e~Gvd~  179 (292)
T PRK09875        166 LEQLALLQAHGVDL  179 (292)
T ss_pred             HHHHHHHHHcCcCc
Confidence            22344555656543

>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3

Probab=97.93  E-value=0.00018  Score=64.88  Aligned_cols=178  Identities=17%  Similarity=0.120  Sum_probs=91.0

Q ss_pred             ccccccccccCCCCCC--------C----ChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHH-Hhccceeecc
Q 020079          106 GGIDPHTHLAMEFMGS--------E----TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK-KAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--------~----~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  172 (331)
                      |++.+|=|+...+.+.        .    ..+......+...+.|+.|++|+....-+.....+....+ .+-+....-+
T Consensus         7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG   86 (308)
T PF02126_consen    7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTG   86 (308)
T ss_dssp             SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEE
T ss_pred             CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCC
Confidence            7888999987643211        1    1122223345566799999999976554433333333322 2222222222


Q ss_pred             ccccccCC-------ChhhHHHHHHHHHHhCCC-------eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079          173 FHMAITKW-------DEVVSDEMEVMVKEKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG  238 (331)
Q Consensus       173 ~~~~~~~~-------~~~~~~~~~~~~~~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~  238 (331)
                      ++......       .++..+.+.+-+ ..|++       .||...+...........++++...+++.|+||++|++..
T Consensus        87 ~y~~~~~p~~~~~~s~e~la~~~i~Ei-~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g  165 (308)
T PF02126_consen   87 FYKEPFYPEWVREASVEELADLFIREI-EEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRG  165 (308)
T ss_dssp             E-SGGCSCHHHHTSHHHHHHHHHHHHH-HT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTT
T ss_pred             CCccccCChhhhcCCHHHHHHHHHHHH-HhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCC
Confidence            22211111       111222222222 24544       4666544422222234567788888888999999998544


Q ss_pred             h-hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHHHHHcCCCEEEec
Q 020079          239 D-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN---TPLYVVHVMSMDAMEEIAKARKAGPNFLNTT  314 (331)
Q Consensus       239 ~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g---~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~  314 (331)
                      . ...+..                               ++..+.|   -++.++|+....+++..+++.++|+.|..|+
T Consensus       166 ~~~~~e~~-------------------------------~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~  214 (308)
T PF02126_consen  166 TRMGLEQL-------------------------------DILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDT  214 (308)
T ss_dssp             GTCHHHHH-------------------------------HHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETT
T ss_pred             CcCHHHHH-------------------------------HHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecC
Confidence            3 222222                               3333444   3588889876666777888888898888876


Q ss_pred             C
Q 020079          315 I  315 (331)
Q Consensus       315 ~  315 (331)
                      .
T Consensus       215 ~  215 (308)
T PF02126_consen  215 I  215 (308)
T ss_dssp             T
T ss_pred             C
Confidence            6

1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....

>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

Probab=97.70  E-value=0.0021  Score=56.57  Aligned_cols=180  Identities=18%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             ccccccccccCCC---CCCCC------hhhH---HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecc
Q 020079          106 GGIDPHTHLAMEF---MGSET------IDDF---FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~---~~~~~------~~~~---~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (331)
                      |+..+|=|+....   .+...      .+.+   ........+.|+-|++|+....-+ +.....+..++.+.+....-+
T Consensus        17 GvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TG   96 (316)
T COG1735          17 GVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATG   96 (316)
T ss_pred             cceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEecc
Confidence            7788888876531   11111      1111   122344567899999999765544 333333333333333222222


Q ss_pred             ccccccC------CC-hhhHHHHHHHHHHhCCC-------eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079          173 FHMAITK------WD-EVVSDEMEVMVKEKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG  238 (331)
Q Consensus       173 ~~~~~~~------~~-~~~~~~~~~~~~~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~  238 (331)
                      ++.....      .+ ++..+.+.+-+ +.|..       .||...+..+.....++.|+++....++.|.|+++|.+..
T Consensus        97 fy~~~~~p~~~~~~~i~~~ae~~v~ei-~~Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~g  175 (316)
T COG1735          97 FYKAAFHPEYFALRPIEELAEFVVKEI-EEGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAG  175 (316)
T ss_pred             ccccccchhHHhhCCHHHHHHHHHHHH-HhcccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccch
Confidence            2211111      11 22223333333 23422       3444333332222234567777777788899999997544


Q ss_pred             hhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC-CHHHHHHHHHHHHcCCCEEEec
Q 020079          239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGPNFLNTT  314 (331)
Q Consensus       239 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~-~~~~~~~i~~~~~~Gi~v~~~~  314 (331)
                      ..--+..+.+.++|+.-                            .++.++|+. +.+.+.-.+.++.+|..+..|.
T Consensus       176 t~g~eq~~il~~egvdl----------------------------~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~  224 (316)
T COG1735         176 TMGLEQLRILAEEGVDL----------------------------RKVSIGHMDPNTDDVYYQKKLADRGAFLEFDR  224 (316)
T ss_pred             hhhHHHHHHHHHcCCCh----------------------------hHeeEeccCCCCChHHHHHHHHhcCceEEecc
Confidence            32222223333333210                            247788887 6677777888888888777653

>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)

Probab=97.66  E-value=0.004  Score=55.09  Aligned_cols=49  Identities=27%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      .++++++. ..|+.++|......+.  .+.+.+.++++.+.++|+++.+|+.
T Consensus        83 ~~~l~~~~-~~g~rGvRl~~~~~~~--~~~~~~~~~~~~~~~~gl~v~~~~~  131 (263)
T cd01311          83 DAELKEMH-DAGVRGVRFNFLFGGV--DNKDELDEIAKRAAELGWHVQVYFD  131 (263)
T ss_pred             HHHHHHHH-HCCCeEEEEecccCCC--CCHHHHHHHHHHHHHcCCEEEEEeC
Confidence            35666665 6899999876443332  2778889999999999999999975

This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.

>cd00443 ADA_AMPD Adenosine/AMP deaminase

Probab=97.21  E-value=0.022  Score=51.61  Aligned_cols=109  Identities=15%  Similarity=0.025  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHcC-CcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          213 NDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g-~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      +...+...++.|++.| +++.+|+..........+. ...+ ...-+|+......      .+.+++..+.++++.+|..
T Consensus       151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~-~~~~-~~RIgHg~~~~~~------p~~~~~l~~~~i~ie~CP~  222 (305)
T cd00443         151 PLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQA-LLLL-PDRIGHGIFLLKH------PELIYLVKLRNIPIEVCPT  222 (305)
T ss_pred             CHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHH-HHhc-cceeeceEecCCC------HHHHHHHHHcCCEEEECcc
Confidence            5778999999999999 9999997432222222222 2222 3333455432221      2356677777887666665


Q ss_pred             CCHH-------HHHHHHHHHHcCCCEEEecCCccccchhhhhhhc
Q 020079          292 MSMD-------AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVE  329 (331)
Q Consensus       292 ~~~~-------~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~~  329 (331)
                      |+..       .-.+++++.++|++|+.+|.--..+.+++.+.+.
T Consensus       223 SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~~  267 (305)
T cd00443         223 SNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEYS  267 (305)
T ss_pred             hhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCCChHHHHH
Confidence            5421       1246899999999999888544444445555443

Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase

Probab=96.89  E-value=0.13  Score=47.39  Aligned_cols=108  Identities=11%  Similarity=-0.041  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHHHHcC--CcEEEEc-CCch----hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC
Q 020079          212 INDELLIEGFKRCKSLG--ALAMVHA-ENGD----AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT  284 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g--~~v~~H~-e~~~----~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~  284 (331)
                      .+.+.+..+++.|++.|  +++.+|+ |...    ......+.+ ..|.. +-+|+.....      -.+.++++++.++
T Consensus       176 ~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~-RIGHG~~~~~------dp~ll~~l~~~~I  247 (345)
T cd01321         176 RPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTK-RIGHGFALPK------HPLLMDLVKKKNI  247 (345)
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCC-cCccccccCc------CHHHHHHHHHcCC
Confidence            35788999999999999  9999998 5431    112222223 33332 1234432221      1345677888899


Q ss_pred             CEEEEeCCCH-------HHHHHHHHHHHcCCCEEEecCCccccch-hhhhh
Q 020079          285 PLYVVHVMSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCS-NIIRM  327 (331)
Q Consensus       285 ~~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~-~~~~~  327 (331)
                      ++.+|..|+-       -.-.+++.+.++|++|+.+|.--....+ ++...
T Consensus       248 ~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~E  298 (345)
T cd01321         248 AIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKGLSHD  298 (345)
T ss_pred             eEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCCchHH
Confidence            9999998762       1224799999999999987764444444 44443

>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3

Probab=96.54  E-value=0.0067  Score=45.24  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI   87 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~   87 (331)
                      ..|++|+|+-|+|..++.+++|-|+||||+.||+..
T Consensus        65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAG  100 (121)
T PF00449_consen   65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAG  100 (121)
T ss_dssp             C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB
T ss_pred             cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccC
Confidence            468999999999998889999999999999999854

5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....

>PTZ00124 adenosine deaminase; Provisional

Probab=96.15  E-value=0.24  Score=45.90  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEc-CC--chhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          215 ELLIEGFKRCKSLGALAMVHA-EN--GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       215 ~~l~~~~~~A~~~g~~v~~H~-e~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      ..+..+++.|++.|+++.+|+ |.  ........+.+...|... -+|+.....      -.+.++.+.+.++++.+|..
T Consensus       206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~R-IGHG~~~~~------d~~l~~~l~~~~I~lEvCPt  278 (362)
T PTZ00124        206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKR-IGHGIRVAE------SQELIDMVKEKDILLEVCPI  278 (362)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCc-cccccccCC------CHHHHHHHHHcCCeEEECCc
Confidence            568899999999999999998 53  222222223333333322 233332211      13456778888999999998


Q ss_pred             CCH-------HHHHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079          292 MSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV  328 (331)
Q Consensus       292 ~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~  328 (331)
                      |+-       -.-.+++.+.++|++|+.+|.--..+.+.+.+.+
T Consensus       279 SN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t~l~~Ey  322 (362)
T PTZ00124        279 SNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLTNINDDY  322 (362)
T ss_pred             chhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCCChhHHH
Confidence            862       1235799999999999998865555555555544

>PRK08392 hypothetical protein; Provisional

Probab=95.97  E-value=0.79  Score=39.14  Aligned_cols=184  Identities=15%  Similarity=0.045  Sum_probs=90.1

Q ss_pred             ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe--cCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhh
Q 020079          108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI--DFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVV  184 (331)
Q Consensus       108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (331)
                      ||.|+|...+- +..+.++   ..+.|.+.|++.+.  |....... .....+....+......+.+.........+ ..
T Consensus         1 ~D~H~HT~~sd-~~~~~~e---~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~-~~   75 (215)
T PRK08392          1 MDLHTHTVYSD-GIGSVRD---NIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP-NG   75 (215)
T ss_pred             CccccCCCCcC-CcCCHHH---HHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC-Cc
Confidence            79999987762 4344444   47788999999875  44322111 222222222222111112211111111111 11


Q ss_pred             HHHHHHHHHHhCCCeEEEEEecCCCCcC--CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccccc
Q 020079          185 SDEMEVMVKEKGINSFKFFMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS  262 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~--~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~  262 (331)
                      .+...++.+  ..+.+-.  +-|.....  ..+-++.+.+.++....-+..|.......         .+          
T Consensus        76 ~~~~~~~~~--~~D~vI~--SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~---------~~----------  132 (215)
T PRK08392         76 VDITDDFAK--KLDYVIA--SVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPY---------IG----------  132 (215)
T ss_pred             chhHHHHHh--hCCEEEE--EeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccC---------CC----------
Confidence            223333332  2333311  22211111  12345556666666666788885321000         00          


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       263 ~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      .+   ....+++.++.+.+.|..+.+.-....-..+.++.+++.|++++++..-|.-.-+
T Consensus       133 ~~---~~~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~~~~v  189 (215)
T PRK08392        133 YP---SEEELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHRPEDV  189 (215)
T ss_pred             Cc---hHHHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCChHHC
Confidence            01   1245677888888889887776321112236789999999999988877765443

>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]

Probab=95.81  E-value=0.3  Score=45.81  Aligned_cols=108  Identities=20%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc--ceeeccccc---c---ccCCChhhHHHHHH---HHHHhCCCe
Q 020079          131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN--SCMDYGFHM---A---ITKWDEVVSDEMEV---MVKEKGINS  199 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~~~~~~~~---~~~~~g~~~  199 (331)
                      ...+.+.|||++.|+. .......+.++.+++....  ..+.+..+.   +   ..+........+.+   ..+..|.. 
T Consensus       136 ~~~~~a~GiTt~~d~~-~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~~-  213 (404)
T PF07969_consen  136 AMAAGAYGITTVLDYG-GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGAP-  213 (404)
T ss_dssp             HHHHCHTCEEEETTCE-CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTSE-
T ss_pred             HHHhcCCCeEEecCCc-cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCccccc-
Confidence            3446779999999987 2222344444444444332  222222111   0   11111111222222   22223331 


Q ss_pred             EEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079          200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG  244 (331)
Q Consensus       200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~  244 (331)
                          ...++....+++.+.++++.|.+.|+++.+|+.....+...
T Consensus       214 ----~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~  254 (404)
T PF07969_consen  214 ----VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEA  254 (404)
T ss_dssp             ----EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHH
T ss_pred             ----ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhH
Confidence                13344556788889999999999999999999665554433

Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....

>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]

Probab=95.68  E-value=0.46  Score=43.48  Aligned_cols=98  Identities=19%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ....+.+..+++.+++.|+.+..||......+...+.+...+.. .-+|+....      .....+.+....++++.+|+
T Consensus       181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~-rI~HGi~~~------~d~~L~~~l~~~qI~levCP  253 (345)
T COG1816         181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAE-RIGHGIRAI------EDPELLYRLAERQIPLEVCP  253 (345)
T ss_pred             cCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchh-hhccccccc------cCHHHHHHHHHhCCeeEECC
Confidence            45688999999999999999999985444444444333333321 112221111      11245677777899999999


Q ss_pred             CCCH-----H--HHHHHHHHHHcCCCEEEecC
Q 020079          291 VMSM-----D--AMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       291 ~~~~-----~--~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .|+-     .  .--+++++-++|++|+..|.
T Consensus       254 ~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTD  285 (345)
T COG1816         254 LSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTD  285 (345)
T ss_pred             cchhhcccccchhhCcHHHHHHcCCceEEcCC
Confidence            8871     1  22369999999999998765

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.22  Score=45.82  Aligned_cols=131  Identities=18%  Similarity=0.230  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEec-----C-CCCcCCHHHHHHHHHHHHHcCCcEEE------EcCCchhhHHHHHHHH
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAY-----K-GSFMINDELLIEGFKRCKSLGALAMV------HAENGDAVFEGQKRMI  249 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~-----~-~~~~~~~~~l~~~~~~A~~~g~~v~~------H~e~~~~~~~~~~~~~  249 (331)
                      ...++.++.+. +.|++.+  |++.     . ....++.+.++++++.|+++|.++.+      |....+......+.+.
T Consensus        13 ag~l~~l~~ai-~~GADaV--Y~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~   89 (347)
T COG0826          13 AGNLEDLKAAI-AAGADAV--YIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV   89 (347)
T ss_pred             CCCHHHHHHHH-HcCCCEE--EeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH
Confidence            34456677776 6787765  3332     1 12357889999999999999997644      3333344456667788


Q ss_pred             HcCCCCcccccccCChHHHHHHHHHHHHHHHhcC--CCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079          250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRM  327 (331)
Q Consensus       250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g--~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~  327 (331)
                      +.|...-..   ..|         -.+.++++.+  .++|+++..+....+.++.+++.|...+  +-|.=++...|.+|
T Consensus        90 e~GvDaviv---~Dp---------g~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rv--Vl~rEls~~ei~~i  155 (347)
T COG0826          90 ELGVDAVIV---ADP---------GLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRV--VLPRELSLEEIKEI  155 (347)
T ss_pred             HcCCCEEEE---cCH---------HHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEE--EeCccCCHHHHHHH
Confidence            888764321   111         2345666666  8999999877777788999999996666  45777777777776


Q ss_pred             hc
Q 020079          328 VE  329 (331)
Q Consensus       328 ~~  329 (331)
                      .+
T Consensus       156 ~~  157 (347)
T COG0826         156 KE  157 (347)
T ss_pred             HH
Confidence            54

>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3

Probab=95.38  E-value=0.083  Score=48.34  Aligned_cols=137  Identities=14%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             ChhhHHHHHHHHHHhC---CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079          181 DEVVSDEMEVMVKEKG---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE  257 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~g---~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~  257 (331)
                      ..+..+++.++..+..   +.++..  ... ........+..+++.|++.|+++.+|+.+........+.+...|.. +-
T Consensus       146 ~~~~~~~~~~~~~~~~~~~vvG~dl--~g~-E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~~-RI  221 (331)
T PF00962_consen  146 PDEWAEEIVELASKYPDKGVVGFDL--AGD-EDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGAD-RI  221 (331)
T ss_dssp             THHHHHHHHHHHHHTTTTTEEEEEE--ESS-TTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-S-EE
T ss_pred             hHHHHHHHHHHHhhcccceEEEEEe--cCC-cccCchHHHHHHHhhhcccceeecceecccCCcccccchhhhccce-ee
Confidence            4455555555553432   333332  221 1222344588999999999999999984433333333333333332 22


Q ss_pred             cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-------HHHHHHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079          258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRM  327 (331)
Q Consensus       258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~  327 (331)
                      +|+......      .+.++++.+.++++.+|..|+-       -.--+++++.++|++|+.+|.--....+++...
T Consensus       222 gHG~~~~~~------p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~~~~l~~e  292 (331)
T PF00962_consen  222 GHGVRLIKD------PELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVFGTTLSDE  292 (331)
T ss_dssp             EE-GGGGGS------HHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHHT-SHHHH
T ss_pred             cchhhhhhh------hHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcCCceeccCCCccccCCCcHHH
Confidence            444321111      2345667778899999987631       122478999999999998877555554444443

5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []

Probab=95.19  E-value=0.13  Score=45.15  Aligned_cols=113  Identities=16%  Similarity=0.062  Sum_probs=67.5

Q ss_pred             ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccc
Q 020079          181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA  260 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~  260 (331)
                      .++..+++++...+.|..+++++....+....+......+++.|.++|+++.+|+.........                
T Consensus        83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~----------------  146 (273)
T PF04909_consen   83 PEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAP----------------  146 (273)
T ss_dssp             HHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHH----------------
T ss_pred             chhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhh----------------
Confidence            4566778888776788999998765544333343334599999999999999996511111000                


Q ss_pred             ccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCH--HHHHHHHHHHHcCCCEEEecCC
Q 020079          261 LSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM--DAMEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       261 ~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~--~~~~~i~~~~~~Gi~v~~~~~p  316 (331)
                            ..........+++.++ ++++.++|+...  .-.+.++.++ +.-||.++++-
T Consensus       147 ------~~~~~~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~-~~~nvy~d~s~  198 (273)
T PF04909_consen  147 ------SDPADPEELEELLERFPDLRIILAHLGGPFPWWEEALRLLD-RFPNVYVDLSG  198 (273)
T ss_dssp             ------HHHHHHHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHH-HHTTEEEECHS
T ss_pred             ------HHHHHHHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHH-hCCcccccccc
Confidence                  0011222233444555 689999998776  2223333333 44588888765

The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=94.38  E-value=0.67  Score=39.00  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             cccccccccCCC-CCCCChhhHHHHHHHHHhCCceEEecC
Q 020079          107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHIDF  145 (331)
Q Consensus       107 ~ID~H~H~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~d~  145 (331)
                      +||.|+|+-... -|..+.++....++.+.+.|||+++.-
T Consensus         1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaT   40 (254)
T COG4464           1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVAT   40 (254)
T ss_pred             CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeec
Confidence            599999985431 133455666666788899999999843

>smart00518 AP2Ec AP endonuclease family 2

Probab=93.73  E-value=2.7  Score=37.07  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             HhCCCeEEEEEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079          194 EKGINSFKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~  235 (331)
                      +.|.+.+.++.......   ..+++.++++.+.++++|+.+.+|+
T Consensus        21 ~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~   65 (273)
T smart00518       21 DIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHA   65 (273)
T ss_pred             HcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence            45555555544322111   2345555555555666666666653

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=93.72  E-value=2.3  Score=41.02  Aligned_cols=124  Identities=12%  Similarity=0.064  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhH-HHHHHHHHHhCCCeEEEEE
Q 020079          127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFM  204 (331)
Q Consensus       127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ik~~~  204 (331)
                      ...-.+.+..+|+..++-+-...+. +....++..++.+......+++..+.. .+.+.. +..+++. +.|++.|.+- 
T Consensus        99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~-~t~e~~~~~a~~l~-~~Gad~I~Ik-  175 (499)
T PRK12330         99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPI-HTVEGFVEQAKRLL-DMGADSICIK-  175 (499)
T ss_pred             HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCC-CCHHHHHHHHHHHH-HcCCCEEEeC-
Confidence            3445677889999998744222222 444555556555544333333333322 233333 3344444 6888876431 


Q ss_pred             ecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcCCchhhHHHH-HHHHHcCCCC
Q 020079          205 AYKGSFMINDELLIEGFKRCKSL---GALAMVHAENGDAVFEGQ-KRMIELGITG  255 (331)
Q Consensus       205 ~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~~~~~~~~~-~~~~~~G~~~  255 (331)
                      +.  .-..+++....++...++.   ++++.+|+.+........ -...+.|...
T Consensus       176 Dt--aGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~  228 (499)
T PRK12330        176 DM--AALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV  228 (499)
T ss_pred             CC--ccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence            21  2235778888888877665   699999997765544332 2345667643

>PRK08609 hypothetical protein; Provisional

Probab=93.35  E-value=4.4  Score=40.10  Aligned_cols=52  Identities=23%  Similarity=0.118  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCC--HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          271 ATTRAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       271 ~i~~~~~l~~~~g~~~~i~H~~~--~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      .+++.++.+.+.|+.+.+.-.+.  ....+.++.+++.|+++++++.-|.-.-+
T Consensus       480 d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~~l  533 (570)
T PRK08609        480 NIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTEML  533 (570)
T ss_pred             HHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChhhh
Confidence            35667778788888777764332  12346788899999999988887764433

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]

Probab=93.29  E-value=3.2  Score=36.02  Aligned_cols=53  Identities=21%  Similarity=0.016  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeC--CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          270 EATTRAIRLAEFVNTPLYVVHV--MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       270 ~~i~~~~~l~~~~g~~~~i~H~--~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ..+.+.++++.+.|..+.+.-.  ......+.++.+++.|+.++.++.-|.-...
T Consensus       147 ~~~~~~~~~~~~~g~aleins~~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~~l  201 (237)
T COG1387         147 EDIEELIELAEKNGKALEINSRPGRLDPNSEILRLARELGVKLAIGTDAHRPGDL  201 (237)
T ss_pred             HHHHHHHHHHHHhCcEEeecCCcCccCchHHHHHHHHHhCCeEEeecCcCChhhc
Confidence            4567778888888876554332  1233447888899999999988887765443

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=93.11  E-value=4.2  Score=38.97  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=71.0

Q ss_pred             ChhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHH-HHHHHHHhCCCe
Q 020079          123 TIDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE-MEVMVKEKGINS  199 (331)
Q Consensus       123 ~~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~  199 (331)
                      +++++ +.-.+.+..+|+..++-+-...+. +....++..++.+.......++.... ..+.+...+ .+++. +.|++.
T Consensus       102 ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp-~~t~~y~~~~a~~l~-~~Gad~  179 (468)
T PRK12581        102 YADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP-VHTLNYYLSLVKELV-EMGADS  179 (468)
T ss_pred             CcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-cCcHHHHHHHHHHHH-HcCCCE
Confidence            34553 344677889999999854333322 45566666666654433333333222 222333333 33444 678887


Q ss_pred             EEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHH-HHHHHcCCCC
Q 020079          200 FKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQ-KRMIELGITG  255 (331)
Q Consensus       200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~-~~~~~~G~~~  255 (331)
                      |.+- +.  .-..+++.+.++++..++. ++++.+|+.+........ ....+.|...
T Consensus       180 I~Ik-Dt--aG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~  234 (468)
T PRK12581        180 ICIK-DM--AGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADR  234 (468)
T ss_pred             EEEC-CC--CCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCE
Confidence            6432 21  2235677887877777654 689999987765543332 2345666543

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=92.94  E-value=3.3  Score=41.02  Aligned_cols=124  Identities=12%  Similarity=0.061  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079          127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA  205 (331)
Q Consensus       127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~  205 (331)
                      ++.-.+.+..+|+..++-+-...+. +....++..++.+......+++..+. ..+.+...++.+.+.+.|++.|.+- +
T Consensus        98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp-~~t~e~~~~~ak~l~~~Gad~I~Ik-D  175 (596)
T PRK14042         98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSP-VHTLDNFLELGKKLAEMGCDSIAIK-D  175 (596)
T ss_pred             HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHcCCCEEEeC-C
Confidence            3445677899999999854333322 55566677776665544444444433 2333333333333336888876432 2


Q ss_pred             cCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       206 ~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      .  .-..+++...+++...++ .++++++|+++........ ....+.|..
T Consensus       176 t--aG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad  224 (596)
T PRK14042        176 M--AGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCN  224 (596)
T ss_pred             c--ccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCC
Confidence            1  223467777777777654 4899999997766544332 234566654

>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]

Probab=92.59  E-value=0.04  Score=51.79  Aligned_cols=15  Identities=67%  Similarity=0.897  Sum_probs=12.5

Q ss_pred             eeecccccccccccC
Q 020079          102 FVMPGGIDPHTHLAM  116 (331)
Q Consensus       102 ~v~PG~ID~H~H~~~  116 (331)
                      +|+|||||.|+|+..
T Consensus         1 ~v~PGfiD~H~H~~~   15 (404)
T PF07969_consen    1 TVMPGFIDSHTHLDS   15 (404)
T ss_dssp             EEEE-EEEEEEEHTT
T ss_pred             CCccChhHHhhChHH
Confidence            589999999999875

Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....

>TIGR01496 DHPS dihydropteroate synthase

Probab=92.34  E-value=1.6  Score=38.51  Aligned_cols=119  Identities=13%  Similarity=0.108  Sum_probs=73.0

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEec--CCCCcCC-HHH---HHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAY--KGSFMIN-DEL---LIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~--~~~~~~~-~~~---l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      ++..+..+++. +.|++.|++....  .+....+ +++   +..+++.+++. ++|+.+|..+++..+.+.    +.|..
T Consensus        23 ~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al----~~G~~   97 (257)
T TIGR01496        23 DKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAAL----EAGAD   97 (257)
T ss_pred             HHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHH----HcCCC
Confidence            45566666666 7899999874211  1111223 334   77788888877 999999998887776554    33543


Q ss_pred             CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-------------------HHHHHHHHHHHHcCC---CEEE
Q 020079          255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-------------------MDAMEEIAKARKAGP---NFLN  312 (331)
Q Consensus       255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-------------------~~~~~~i~~~~~~Gi---~v~~  312 (331)
                      .-....   .   + . .++.+.+++++|+++.+.|...                   ..-.+.++.+++.|+   ++..
T Consensus        98 iINsis---~---~-~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil  169 (257)
T TIGR01496        98 IINDVS---G---G-Q-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL  169 (257)
T ss_pred             EEEECC---C---C-C-CchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence            211110   0   0 0 2345677889999999998631                   012245677889999   4555


Q ss_pred             e
Q 020079          313 T  313 (331)
Q Consensus       313 ~  313 (331)
                      |
T Consensus       170 D  170 (257)
T TIGR01496       170 D  170 (257)
T ss_pred             E
Confidence            5

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK01060 endonuclease IV; Provisional

Probab=92.30  E-value=7.2  Score=34.54  Aligned_cols=48  Identities=21%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             HHHHHHHhCCCeEEEEEecCCC---CcCCHHHHHHHHHHHHHcCCc---EEEEc
Q 020079          188 MEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSLGAL---AMVHA  235 (331)
Q Consensus       188 ~~~~~~~~g~~~ik~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~---v~~H~  235 (331)
                      ..+.+++.|.+++.+++.....   ...+++.++++.+.++++|+.   +.+|.
T Consensus        17 ~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~   70 (281)
T PRK01060         17 AVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHA   70 (281)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEec
Confidence            3334447899999887653221   235778899999999999998   88885

>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=92.20  E-value=7.6  Score=34.89  Aligned_cols=112  Identities=24%  Similarity=0.281  Sum_probs=66.8

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL  261 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~  261 (331)
                      +...+++++.+.+.|..++++.....+. ..+++.+..+++.|+++|+|+.+|.........         ..  ..  .
T Consensus       112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~-~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~---------~~--~~--~  177 (293)
T COG2159         112 EAAAEELERRVRELGFVGVKLHPVAQGF-YPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAG---------LE--KG--H  177 (293)
T ss_pred             HHHHHHHHHHHHhcCceEEEecccccCC-CCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcc---------cc--cC--C
Confidence            4467888888866788888874433322 235566899999999999999999754322110         00  00  0


Q ss_pred             cCChHHHHHHHHHHHHHHHhc-CCCEEEEeCC--CHHHHHHHHHHHHcCCCEEEecCC
Q 020079          262 SRPPLLEGEATTRAIRLAEFV-NTPLYVVHVM--SMDAMEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       262 ~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~--~~~~~~~i~~~~~~Gi~v~~~~~p  316 (331)
                      ..|...+        +++.+. ..++.+.|+.  -.-..+.+..+ ...-||..+++-
T Consensus       178 ~~p~~~~--------~va~~fP~l~IVl~H~G~~~p~~~~a~~~a-~~~~nvy~d~s~  226 (293)
T COG2159         178 SDPLYLD--------DVARKFPELKIVLGHMGEDYPWELEAIELA-YAHPNVYLDTSG  226 (293)
T ss_pred             CCchHHH--------HHHHHCCCCcEEEEecCCCCchhHHHHHHH-HhCCCceeeeec
Confidence            1222222        445555 7899999997  32222233333 345678777663

>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]

Probab=92.04  E-value=3.8  Score=36.61  Aligned_cols=136  Identities=16%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             EeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc
Q 020079           96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM  175 (331)
Q Consensus        96 id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (331)
                      .|-.-...-|.+.|.|.|+...-    ...+.......+...|+.-+...++.. ......++............++.|.
T Consensus         7 ~d~~~~~~~~~~~~~~~~~~~~~----~~~d~s~v~~~a~~~~v~~~~v~gt~~-~d~~~~~~l~~~y~~~v~~t~G~HP   81 (296)
T KOG3020|consen    7 LDDGRNFTNPMLEDIYCHIQAHP----SDSDASQVLERAVQAGVSKLIVTGTSL-KDSKEALELAEKYPGSVYPTFGVHP   81 (296)
T ss_pred             hhhhhhhcchhhchhhhccccCC----CCccchHHHHHHHhccceEEEEeCCCc-chHHHHHHHHhhCCCceeeccCcCC
Confidence            34444566788999999998652    112222235567788999888665522 1233333322222122222222221


Q ss_pred             c-ccCC-----ChhhHHHHHHHHHHhCC----CeEEE-EEecCCCCcCC----HHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          176 A-ITKW-----DEVVSDEMEVMVKEKGI----NSFKF-FMAYKGSFMIN----DELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       176 ~-~~~~-----~~~~~~~~~~~~~~~g~----~~ik~-~~~~~~~~~~~----~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      - ...+     ++...+.+..+.+. +.    ..|.. .++++.....+    ...+++-+++|.+..+|+.+|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~  157 (296)
T KOG3020|consen   82 HFSQEFSDQSRKEKFLDTLLSIIEN-GFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRS  157 (296)
T ss_pred             CcccchhhccchhhHHHHHHHHHhh-cccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechh
Confidence            1 1111     12345666666644 21    12221 11222111222    345788999999999999999855

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=91.95  E-value=6.3  Score=34.90  Aligned_cols=19  Identities=21%  Similarity=0.065  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHhcCCCEEEE
Q 020079          271 ATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       271 ~i~~~~~l~~~~g~~~~i~  289 (331)
                      .+.+..+.++..|+++.+.
T Consensus       124 ~l~~l~~~a~~~gi~l~lE  142 (279)
T cd00019         124 ALNELIDKAETKGVVIALE  142 (279)
T ss_pred             HHHHHHHhccCCCCEEEEe
Confidence            3444555555556655544

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=91.84  E-value=6.4  Score=36.60  Aligned_cols=124  Identities=16%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079          128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY  206 (331)
Q Consensus       128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~  206 (331)
                      ..-.+.+..+|++.++-+-..++. +....++..++.+.......++..+..-.-+-..+..+++. +.|++.|-+- +.
T Consensus       101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~-~~g~DSIciK-Dm  178 (472)
T COG5016         101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL-EMGVDSICIK-DM  178 (472)
T ss_pred             HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH-HcCCCEEEee-cc
Confidence            344577899999999855333333 55666666666665433333333222222233344445555 6788876321 11


Q ss_pred             CCCCcCCHHHHHHHHHHH-HHcCCcEEEEcCCchhhHHH-HHHHHHcCCCC
Q 020079          207 KGSFMINDELLIEGFKRC-KSLGALAMVHAENGDAVFEG-QKRMIELGITG  255 (331)
Q Consensus       207 ~~~~~~~~~~l~~~~~~A-~~~g~~v~~H~e~~~~~~~~-~~~~~~~G~~~  255 (331)
                      .+  ..++..-.+++... ++.++++.+|+......... .-...+.|...
T Consensus       179 aG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~  227 (472)
T COG5016         179 AG--LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDG  227 (472)
T ss_pred             cc--cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcch
Confidence            11  23555555555555 45599999998655443332 23345566543

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.74  E-value=15  Score=36.50  Aligned_cols=179  Identities=16%  Similarity=0.075  Sum_probs=103.9

Q ss_pred             CChhhHHHHHHHHHhCCceEEecCcCC--------CCCcHHHHHHHHHHHhccceeeccc----cccccCCChhhHHHHH
Q 020079          122 ETIDDFFSGQAAALAGGTTMHIDFVIP--------INGSLTAGFEAYEKKAKNSCMDYGF----HMAITKWDEVVSDEME  189 (331)
Q Consensus       122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  189 (331)
                      ...+++...+..+-+.|+.++--.++.        ...+-++.++.+++..++..+...+    ..+....+++..+...
T Consensus        23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v  102 (596)
T PRK14042         23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFV  102 (596)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHH
Confidence            456666666666666777766533221        1225677888888877765555433    2334445566555555


Q ss_pred             HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-------cCCchhhHHHHHHHHHcCCCCcc---cc
Q 020079          190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-------AENGDAVFEGQKRMIELGITGPE---GH  259 (331)
Q Consensus       190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-------~e~~~~~~~~~~~~~~~G~~~~~---~~  259 (331)
                      +...++|++.+.+|-..     -+.+.++..++.+++.|..+..-       ..+.+......+.+.+.|.....   ..
T Consensus       103 ~~a~~~Gidv~Rifd~l-----nd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDta  177 (596)
T PRK14042        103 KLAVNNGVDVFRVFDAL-----NDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMA  177 (596)
T ss_pred             HHHHHcCCCEEEEcccC-----cchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcc
Confidence            54447899999887432     25678888999999999866543       12333333344556777764311   11


Q ss_pred             cccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079          260 ALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNF  310 (331)
Q Consensus       260 ~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v  310 (331)
                      +...|     ..+.+.+... +..+.++++ +|.+.+-++.-.-.+-++|+.+
T Consensus       178 G~l~P-----~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~  225 (596)
T PRK14042        178 GLLTP-----TVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNH  225 (596)
T ss_pred             cCCCH-----HHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCE
Confidence            11122     2333333333 334666554 4666666667677778899875

>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=91.64  E-value=5.5  Score=35.22  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          214 DELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       214 ~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .+.+++.++..+++|+.+..+...
T Consensus       123 a~~~r~~~~rL~~~gl~fdl~~~~  146 (279)
T COG3618         123 APAWRANVERLAKLGLHFDLQVDP  146 (279)
T ss_pred             hHHHHHHHHHHHhcCCeEEEEeCh
Confidence            368889999999999999888643

>PRK07328 histidinol-phosphatase; Provisional

Probab=91.45  E-value=9.6  Score=33.70  Aligned_cols=53  Identities=11%  Similarity=-0.038  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCC-------HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          270 EATTRAIRLAEFVNTPLYVVHVMS-------MDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       270 ~~i~~~~~l~~~~g~~~~i~H~~~-------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ..+++.++.+.+.|..+.+.-...       --..+.++++++.|++++++..-|.-.-+
T Consensus       177 ~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~v  236 (269)
T PRK07328        177 ELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGSDAHRPEEV  236 (269)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence            345677788888887776664210       11236788888888888887776665544

>TIGR01431 adm_rel adenosine deaminase-related growth factor

Probab=90.47  E-value=6.5  Score=37.97  Aligned_cols=96  Identities=14%  Similarity=-0.024  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHH-HHHHcCCcEEEEc-CCch---hhHH-HHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079          212 INDELLIEGFK-RCKSLGALAMVHA-ENGD---AVFE-GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP  285 (331)
Q Consensus       212 ~~~~~l~~~~~-~A~~~g~~v~~H~-e~~~---~~~~-~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~  285 (331)
                      .+...+...+. .+++.|+++.+|+ |...   .... ..+.+ ..|.. +-+|+......      ...++++++.++.
T Consensus       303 ~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~~-RIGHG~~l~~~------P~l~~~vke~~I~  374 (479)
T TIGR01431       303 RSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNTT-RIGHGFALVKH------PLVLQMLKERNIA  374 (479)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCCc-cccCcccccCC------HHHHHHHHHhCCe
Confidence            35566666665 4556999999998 4421   1122 22222 23321 12444332211      2356778888999


Q ss_pred             EEEEeCCCH-------HHHHHHHHHHHcCCCEEEecC
Q 020079          286 LYVVHVMSM-------DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       286 ~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+|..|+.       -.--+++.+.++|++|++++.
T Consensus       375 lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSD  411 (479)
T TIGR01431       375 VEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSD  411 (479)
T ss_pred             EEECccchhhhcccCCcccChHHHHHHCCCcEEEeCC
Confidence            999998862       112468999999999997665

Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=90.03  E-value=8.7  Score=36.76  Aligned_cols=122  Identities=16%  Similarity=0.076  Sum_probs=65.1

Q ss_pred             HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhH-HHHHHHHHHhCCCeEEEEEe
Q 020079          128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFMA  205 (331)
Q Consensus       128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ik~~~~  205 (331)
                      ....+.++++|+..++-+....+. +....++..++.+......+++..+. ..+.+.. +..+++. +.|++.|.+- +
T Consensus        99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p-~~~~~~~~~~a~~l~-~~Gad~I~i~-D  175 (448)
T PRK12331         99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSP-VHTIDYFVKLAKEMQ-EMGADSICIK-D  175 (448)
T ss_pred             HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCC-CCCHHHHHHHHHHHH-HcCCCEEEEc-C
Confidence            344577889999987743222221 34445555555443322222222221 1233333 3344444 6888876432 2


Q ss_pred             cCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       206 ~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      .  .-..+++....++...++ .++++.+|+++........ -...+.|..
T Consensus       176 t--~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad  224 (448)
T PRK12331        176 M--AGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGAD  224 (448)
T ss_pred             C--CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCC
Confidence            1  223467777777777654 4899999997765544332 224466654

>PRK13352 thiamine biosynthesis protein ThiC; Provisional

Probab=89.15  E-value=19  Score=33.63  Aligned_cols=55  Identities=16%  Similarity=0.098  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCC---------H-------HHHHHHHHHHHcCCCEEEecCCccccchhh
Q 020079          269 GEATTRAIRLAEFVNTPLYVVHVMS---------M-------DAMEEIAKARKAGPNFLNTTIPLCDSCSNI  324 (331)
Q Consensus       269 ~~~i~~~~~l~~~~g~~~~i~H~~~---------~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~  324 (331)
                      ++..++.+++++++++.+.+.-.--         .       .--+++++++++|+.|-++- |-|..+..|
T Consensus       205 ye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEG-PGHvPl~~I  275 (431)
T PRK13352        205 YEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEG-PGHVPLDQI  275 (431)
T ss_pred             HHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEEC-CCCCCHHHH
Confidence            3456778888888887665553210         0       11246778888888887764 655555444

>PRK07945 hypothetical protein; Provisional

Probab=88.94  E-value=19  Score=33.12  Aligned_cols=50  Identities=12%  Similarity=-0.082  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCC--HHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~--~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                      .++.++.+.+.|..+.++-...  .-..+.++++++.|++++++..-|.-.-
T Consensus       247 ~~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~~  298 (335)
T PRK07945        247 AEAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCLFSIDTDAHAPGQ  298 (335)
T ss_pred             HHHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCCCCChhh
Confidence            4667788888888877764321  2234688999999999998877776443

>PRK09358 adenosine deaminase; Provisional

Probab=88.75  E-value=19  Score=32.97  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=22.2

Q ss_pred             EEeCCCHH-HHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          288 VVHVMSMD-AMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       288 i~H~~~~~-~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +.|+.... .-+.++.++++|+.|.  +||.+|..++
T Consensus       223 i~Hg~~l~~~~~~~~~l~~~gi~v~--~cP~Sn~~l~  257 (340)
T PRK09358        223 IGHGVRAIEDPALMARLADRRIPLE--VCPTSNVQTG  257 (340)
T ss_pred             cchhhhhccCHHHHHHHHHcCCeEE--ECCCcccccc
Confidence            45554321 2346888899997666  7898876554

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=88.52  E-value=17  Score=32.04  Aligned_cols=48  Identities=4%  Similarity=-0.081  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhCCCeEEEEEecCC--CCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079          186 DEMEVMVKEKGINSFKFFMAYKG--SFMINDELLIEGFKRCKSLGALAMVH  234 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~~~~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H  234 (331)
                      +.++.+. +.|.+++.++.....  ....+...++++.+.++++|+.+..+
T Consensus        17 ~~l~~~~-~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~   66 (275)
T PRK09856         17 HAFRDAS-ELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGY   66 (275)
T ss_pred             HHHHHHH-HcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEe
Confidence            3444444 788888877543211  11234567888888999999988765

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=88.23  E-value=9.6  Score=36.63  Aligned_cols=128  Identities=14%  Similarity=0.026  Sum_probs=65.6

Q ss_pred             ChhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeE
Q 020079          123 TIDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF  200 (331)
Q Consensus       123 ~~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i  200 (331)
                      .++++ +.-.+.++++|+..++-+....+. +....++..++.+........+.... ..+.+...++.+.+.+.|++.|
T Consensus        92 ~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p-~~t~e~~~~~a~~l~~~Gad~I  170 (467)
T PRK14041         92 YADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSP-VHTLEYYLEFARELVDMGVDSI  170 (467)
T ss_pred             ccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCC-CCCHHHHHHHHHHHHHcCCCEE
Confidence            34553 333577889999987733222211 34444444444443222222222221 2233333333333336788876


Q ss_pred             EEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          201 KFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       201 k~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      .+- +..  -..++..+.+++...++ .++++.+|+++........ -...+.|..
T Consensus       171 ~i~-Dt~--G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad  223 (467)
T PRK14041        171 CIK-DMA--GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGAD  223 (467)
T ss_pred             EEC-Ccc--CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCC
Confidence            432 211  23467777777776654 4899999997765543332 224466654

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=88.00  E-value=18  Score=32.07  Aligned_cols=110  Identities=13%  Similarity=0.016  Sum_probs=57.4

Q ss_pred             HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079          128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY  206 (331)
Q Consensus       128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~  206 (331)
                      ....+.+..+|+..++-.....+. ...+.++..++.+........+... ...+.+...++.+.+.+.|++.+.+- +.
T Consensus        94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT  171 (275)
T cd07937          94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDMGADSICIK-DM  171 (275)
T ss_pred             HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHcCCCEEEEc-CC
Confidence            334566778898877643222211 2334444444444322222211111 22333444444444436788877432 22


Q ss_pred             CCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhh
Q 020079          207 KGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAV  241 (331)
Q Consensus       207 ~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~  241 (331)
                        .-..+++.+..++...++. ++++.+|+.+....
T Consensus       172 --~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~Gl  205 (275)
T cd07937         172 --AGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGL  205 (275)
T ss_pred             --CCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCCh
Confidence              2235678888888777654 78899998776543

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=87.38  E-value=17  Score=32.48  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      ..++..+++++.|++.+-+.++. |+.    +..+.+.|+++.   ++.++|+..|-.+.-..+ ..++..+.|+..
T Consensus       157 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~---~~~~iPLVLHGgSG~~~e-~~~~ai~~Gi~K  229 (285)
T PRK07709        157 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR---DFTGVPLVLHGGTGIPTA-DIEKAISLGTSK  229 (285)
T ss_pred             CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHH---HHHCCCEEEeCCCCCCHH-HHHHHHHcCCeE
Confidence            35677778867899988665432 333    345666666664   445999999965432222 234556666643

>PRK09248 putative hydrolase; Validated

Probab=87.23  E-value=19  Score=31.28  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=24.5

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      ++|.|+|...+..+..+.+++   .+.+.+.|++++.
T Consensus         4 ~~D~H~HT~~s~~~~~~~~e~---v~~A~~~G~~~i~   37 (246)
T PRK09248          4 PVDTHTHTIASGHAYSTLHEN---AAEAKQKGLKLFA   37 (246)
T ss_pred             ceEeCcCCCCCCCCCCCHHHH---HHHHHHCCCCEEE
Confidence            689999987763233344444   7888999999876

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=86.78  E-value=11  Score=33.65  Aligned_cols=67  Identities=18%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      ..++..+++++.|++.+-+.++. |+.    +..+.+.++++.   ++.++|+..|-.+.-..++ .++..+.|+.
T Consensus       157 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~---~~~~vPLVLHGgSG~~~e~-~~~ai~~GI~  228 (286)
T PRK08610        157 DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIG---LSTGLPLVLHGGTGIPTKD-IQKAIPFGTA  228 (286)
T ss_pred             CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHH---HHHCCCEEEeCCCCCCHHH-HHHHHHCCCe
Confidence            35667777767899988665432 333    345666666664   3559999999654332222 3445666654

>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]

Probab=86.73  E-value=15  Score=34.27  Aligned_cols=97  Identities=18%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHH-cCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE-LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      -+...+..++..+.+.|+.+.+|+.....-....+.+.+ .|. .+-+|+......      ..++.+++..++.+.+|.
T Consensus       224 ~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD~l~~-~RIGHG~~l~~d------p~L~~~~k~~nI~lEiCP  296 (399)
T KOG1097|consen  224 GPLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALDLLGT-ERIGHGYFLTKD------PELINLLKSRNIALEICP  296 (399)
T ss_pred             CChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHHhhCC-ccccCceeccCC------HHHHHHHHhcCceEEEcc
Confidence            345677788888888999999998332121122233333 222 122444332211      135678888899999999


Q ss_pred             CCCH-------HHHHHHHHHHHcCCCEEEecC
Q 020079          291 VMSM-------DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       291 ~~~~-------~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .|+.       -.--.++.+.+.|+|++.++.
T Consensus       297 ~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sD  328 (399)
T KOG1097|consen  297 ISNQVLGLVSDLRNHPVARLLAAGVPVVINSD  328 (399)
T ss_pred             chhhheeccccccccHHHHHHhCCCCEEEeCC
Confidence            8862       222478999999999987543

>TIGR01430 aden_deam adenosine deaminase

Probab=86.40  E-value=12  Score=34.11  Aligned_cols=34  Identities=9%  Similarity=0.050  Sum_probs=23.5

Q ss_pred             EEeCCCHH-HHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          288 VVHVMSMD-AMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       288 i~H~~~~~-~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +.|+.... .-+.++.++++|+.|.  +||.+|..++
T Consensus       213 i~Hg~~l~~~~~~i~~l~~~gi~v~--~cP~Sn~~l~  247 (324)
T TIGR01430       213 IGHGVRALEDPELLKRLAQENITLE--VCPTSNVALG  247 (324)
T ss_pred             cchhhhhccCHHHHHHHHHcCceEE--ECCccccccc
Confidence            56655431 2357888999997666  7898887665

This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.

>PRK15446 phosphonate metabolism protein PhnM; Provisional

Probab=86.22  E-value=3.2  Score=38.86  Aligned_cols=90  Identities=16%  Similarity=0.021  Sum_probs=56.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                      .++.+.++++++.|+++|+++.+|+ +..+.+    ++..+.|+...+.     +...      +.++.+.+.|..+..+
T Consensus       210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i----~~a~~~Gv~~~e~-----~~~~------e~~~~~~~~g~~v~~~  274 (383)
T PRK15446        210 RYAPPNRRAIAALARARGIPLASHDDDTPEHV----AEAHALGVAIAEF-----PTTL------EAARAARALGMSVLMG  274 (383)
T ss_pred             hcCHHHHHHHHHHHHHCCCceeecCCCCHHHH----HHHHHcCCceeeC-----CCcH------HHHHHHHHCCCEEEeC
Confidence            4578999999999999999999998 555544    3456667765431     1111      2234555556654322


Q ss_pred             eC-----CCHHHHHHHHHHHHcCCCEEEecC
Q 020079          290 HV-----MSMDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       290 H~-----~~~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .-     ........++++.+.|+.+..++.
T Consensus       275 ~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD  305 (383)
T PRK15446        275 APNVVRGGSHSGNVSALDLAAAGLLDILSSD  305 (383)
T ss_pred             CcccccCCcccchHhHHHHHHCCCcEEEEcC
Confidence            11     002234667788899988776543

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=86.18  E-value=18  Score=32.31  Aligned_cols=66  Identities=24%  Similarity=0.314  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhCCCeEEEEEe-cCCCC----cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMA-YKGSF----MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~-~~~~~----~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      .++..+++++.|++.+-+.++ -|+.+    ..+.+.++++.+   ..++|+..|-.+.-.. +..+...+.|+.
T Consensus       157 peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~---~~~vPLVLHGgSG~~~-e~~~kai~~GI~  227 (286)
T PRK12738        157 PQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE---VVDVPLVLHGASDVPD-EFVRRTIELGVT  227 (286)
T ss_pred             HHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHH---HhCCCEEEeCCCCCCH-HHHHHHHHcCCe
Confidence            566777786789998876554 24433    345566665544   4589999996443322 223445666654

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=86.16  E-value=38  Score=33.72  Aligned_cols=181  Identities=16%  Similarity=0.159  Sum_probs=100.3

Q ss_pred             CCChhhHHHHHHHHHhCCceEEecCcC--------CCCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHHH
Q 020079          121 SETIDDFFSGQAAALAGGTTMHIDFVI--------PINGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDEM  188 (331)
Q Consensus       121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  188 (331)
                      ..+.++....++.+-+.|+..+--.++        ....+-++.++..++..++..+.....    .+....+++..+..
T Consensus        23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~  102 (593)
T PRK14040         23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERF  102 (593)
T ss_pred             ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHH
Confidence            355667666677777788888753211        112255777777777766544432222    12223344444444


Q ss_pred             HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEE---EEcCCc----hhhHHHHHHHHHcCCCCcc---c
Q 020079          189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM---VHAENG----DAVFEGQKRMIELGITGPE---G  258 (331)
Q Consensus       189 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~---~H~e~~----~~~~~~~~~~~~~G~~~~~---~  258 (331)
                      .+...+.|++.+.++...+     +.+.+...++.|++.|..+.   .+..++    +......+.+.+.|.....   .
T Consensus       103 v~~a~~~Gid~~rifd~ln-----d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt  177 (593)
T PRK14040        103 VERAVKNGMDVFRVFDAMN-----DPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDM  177 (593)
T ss_pred             HHHHHhcCCCEEEEeeeCC-----cHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCC
Confidence            4444378999998875322     45788899999999999642   232222    2233333456666754221   1


Q ss_pred             ccccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE
Q 020079          259 HALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNFL  311 (331)
Q Consensus       259 ~~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~  311 (331)
                      .+...|     ..+.+.+... +..+.++++ +|++.+-+++-.-.+-++|+.+.
T Consensus       178 ~G~l~P-----~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~v  227 (593)
T PRK14040        178 AGLLKP-----YAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGV  227 (593)
T ss_pred             CCCcCH-----HHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEE
Confidence            111223     2333333333 334566544 47766767777777888998753

>PTZ00372 endonuclease 4-like protein; Provisional

Probab=85.98  E-value=31  Score=32.56  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             HHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC---CcCCHHHHHHHHHHHHHcCCc---EE
Q 020079          159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSLGAL---AM  232 (331)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~---v~  232 (331)
                      ..........+.++.|.+....   ....+.+.. ..|.+.+.+|......   ...+++...+..+.++++|+.   +.
T Consensus       121 ~~~~~~~~~~~~iGaHvSiaGG---~~~a~~~a~-~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~  196 (413)
T PTZ00372        121 KIAELAEKSNVYIGAHVSASGG---VDNSPINAY-NIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFIL  196 (413)
T ss_pred             HHHHHhhccCceEEEEEecccc---HHHHHHHHH-HcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEE
Confidence            3333333445555556554322   223444555 6799999998765432   235788999999999999774   78


Q ss_pred             EEc
Q 020079          233 VHA  235 (331)
Q Consensus       233 ~H~  235 (331)
                      +|+
T Consensus       197 ~Ha  199 (413)
T PTZ00372        197 PHG  199 (413)
T ss_pred             eec
Confidence            896

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=85.58  E-value=16  Score=30.33  Aligned_cols=90  Identities=20%  Similarity=0.187  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCCCCc------CC------HHHHHHHHHHHHHcCCcE-EEEcC---Cc--hhhHHH
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKGSFM------IN------DELLIEGFKRCKSLGALA-MVHAE---NG--DAVFEG  244 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~------~~------~~~l~~~~~~A~~~g~~v-~~H~e---~~--~~~~~~  244 (331)
                      ..+++++++.++.|...............      ..      .+.+++.++.|++.|.+. .+|..   ..  ...+..
T Consensus        27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~  106 (213)
T PF01261_consen   27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEEN  106 (213)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHH
Confidence            34667777776778764433322211111      12      578899999999999875 55644   11  111111


Q ss_pred             HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079          245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM  292 (331)
Q Consensus       245 ~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~  292 (331)
                      .+.+                    .+.+.+..+.+++.|+.+.+....
T Consensus       107 ~~~~--------------------~~~l~~l~~~a~~~gv~i~lE~~~  134 (213)
T PF01261_consen  107 WERL--------------------AENLRELAEIAEEYGVRIALENHP  134 (213)
T ss_dssp             HHHH--------------------HHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred             HHHH--------------------HHHHHHHHhhhhhhcceEEEeccc
Confidence            1111                    345677788888889887666544

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>TIGR00190 thiC thiamine biosynthesis protein ThiC

Probab=85.52  E-value=32  Score=32.16  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=17.0

Q ss_pred             HHHHHHHhCCceEEecCcCCCC
Q 020079          129 SGQAAALAGGTTMHIDFVIPIN  150 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~  150 (331)
                      .-++.+++.|.-|+.|....++
T Consensus        81 ~K~~~A~~~GADtiMDLStGgd  102 (423)
T TIGR00190        81 EKALIAIKYGADTVMDLSTGGD  102 (423)
T ss_pred             HHHHHHHHcCCCeEeeccCCCC
Confidence            3356789999999999876553

The thiC ortholog is designated thiA in Bacillus subtilis.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=85.52  E-value=25  Score=35.02  Aligned_cols=127  Identities=14%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             hhh-HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079          124 IDD-FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK  201 (331)
Q Consensus       124 ~~~-~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik  201 (331)
                      +++ ...-.+.+..+|+..++-+-...+. +....++..++.+......+++.... ..+.+...++.+.+.+.|++.|.
T Consensus        95 pddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~~~~~~~~~~a~~l~~~Gad~i~  173 (593)
T PRK14040         95 ADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSP-VHTLQTWVDLAKQLEDMGVDSLC  173 (593)
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC-ccCHHHHHHHHHHHHHcCCCEEE
Confidence            444 3444667889999988744222211 34445555555443322222222221 12233333333333367888764


Q ss_pred             EEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      +- +..  -...++.+..++...++ .++++.+|+++........ -...+.|..
T Consensus       174 i~-Dt~--G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~  225 (593)
T PRK14040        174 IK-DMA--GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGID  225 (593)
T ss_pred             EC-CCC--CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCC
Confidence            32 222  23467777777776654 5899999997765543332 223455553

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=85.42  E-value=6.5  Score=32.67  Aligned_cols=113  Identities=19%  Similarity=0.042  Sum_probs=67.1

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-c-CCchhhHHHHHHHHHcCCCCcccccccCC-hHHHHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-A-ENGDAVFEGQKRMIELGITGPEGHALSRP-PLLEGE  270 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~e~~  270 (331)
                      +.|.+++.+............+.++++.+.++++|+.+..+ . ........              ......+ ......
T Consensus         6 ~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~--------------~~~~~~~~r~~~~~   71 (213)
T PF01261_consen    6 EAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDE--------------ENGSANDEREEALE   71 (213)
T ss_dssp             HTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGT--------------TSTTSSSHHHHHHH
T ss_pred             HcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccc--------------cccCcchhhHHHHH
Confidence            67888887765432111101367889999999999997665 2 11110000              0000000 011134


Q ss_pred             HHHHHHHHHHhcCCCEEEEeCC---C-------------HHHH-HHHHHHHHcCCCEEEecCCcccc
Q 020079          271 ATTRAIRLAEFVNTPLYVVHVM---S-------------MDAM-EEIAKARKAGPNFLNTTIPLCDS  320 (331)
Q Consensus       271 ~i~~~~~l~~~~g~~~~i~H~~---~-------------~~~~-~~i~~~~~~Gi~v~~~~~p~~~~  320 (331)
                      .+.+.+++++..|++..+.|..   .             .+.+ +..+.+++.|+.+..++.+....
T Consensus        72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~  138 (213)
T PF01261_consen   72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS  138 (213)
T ss_dssp             HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred             HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence            5678899999999999999966   1             1222 34555678999999998877764

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=85.18  E-value=21  Score=31.74  Aligned_cols=66  Identities=21%  Similarity=0.330  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CC-----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KG-----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      .++..+++++.|++.+-+.++. |+     .+..+.+.|+++.+..   ++|+..|-.+.-..++ .++..+.|+.
T Consensus       150 pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~-~~~ai~~Gi~  221 (276)
T cd00947         150 PEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQ-IRKAIKLGVC  221 (276)
T ss_pred             HHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHH-HHHHHHcCCe
Confidence            5667777867799988665432 33     3345566666665544   8999999654322222 3444556654

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=85.00  E-value=22  Score=29.97  Aligned_cols=96  Identities=18%  Similarity=0.090  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc--CCchhhHHHHHHHHHcCCCCcccc
Q 020079          185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA--ENGDAVFEGQKRMIELGITGPEGH  259 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~--e~~~~~~~~~~~~~~~G~~~~~~~  259 (331)
                      .++++++. +.|++.+.+ .++.+..+  ...++.++++.+.   .++++.+|.  +++..                   
T Consensus        15 ~~~i~~l~-~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~---~~~~~DvHLMv~~P~~-------------------   71 (201)
T PF00834_consen   15 EEEIKRLE-EAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI---TDLPLDVHLMVENPER-------------------   71 (201)
T ss_dssp             HHHHHHHH-HTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT---SSSEEEEEEESSSGGG-------------------
T ss_pred             HHHHHHHH-HcCCCEEEEeecccccCCcccCCHHHHHHHhhc---CCCcEEEEeeeccHHH-------------------
Confidence            45555555 788888754 45555443  3456777766443   678999995  44432                   


Q ss_pred             cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-HHHHHHHHHHHHcCCCEEEecCCcc
Q 020079          260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGPNFLNTTIPLC  318 (331)
Q Consensus       260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-~~~~~~i~~~~~~Gi~v~~~~~p~~  318 (331)
                                     .++...+.|......|.-+ ....+.++..|++|+.+.+..+|..
T Consensus        72 ---------------~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T  116 (201)
T PF00834_consen   72 ---------------YIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET  116 (201)
T ss_dssp             ---------------HHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS
T ss_pred             ---------------HHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC
Confidence                           1123344566666667532 3345678899999999888888864

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=84.83  E-value=25  Score=34.94  Aligned_cols=127  Identities=17%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             Chhh-HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhH-HHHHHHHHHhCCCe
Q 020079          123 TIDD-FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINS  199 (331)
Q Consensus       123 ~~~~-~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  199 (331)
                      ++++ ...-.+.++.+|+..++-+....+. +....++..++.+........+.. ....+.+.. +.++++. +.|++.
T Consensus        88 ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~-~~Gad~  165 (582)
T TIGR01108        88 YADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELL-EMGVDS  165 (582)
T ss_pred             CchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHH-HcCCCE
Confidence            3444 3444677889999987743222221 344455555555433222222211 111233333 3344444 678887


Q ss_pred             EEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          200 FKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       200 ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      |.+- +..  -..++..+..++...++ .++++++|+++........ -...+.|..
T Consensus       166 I~i~-Dt~--G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~  219 (582)
T TIGR01108       166 ICIK-DMA--GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGAD  219 (582)
T ss_pred             EEEC-CCC--CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCC
Confidence            6432 222  23467777777777654 4899999997765543332 223455543

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=84.58  E-value=23  Score=31.61  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      .++..+++++.|++.+-+.++. |+.    +..+.+.|+++.+   ..++|+..|-.+.-. ++..++..+.|+..
T Consensus       157 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~vPLVLHGgSG~~-~e~~~~ai~~Gi~K  228 (284)
T PRK09195        157 PAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQ---WVNIPLVLHGASGLP-TKDIQQTIKLGICK  228 (284)
T ss_pred             HHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCeEEecCCCCC-HHHHHHHHHcCCeE
Confidence            4667777767899988665442 333    3566777777755   348999999644322 22344556666643

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=84.31  E-value=35  Score=36.86  Aligned_cols=130  Identities=13%  Similarity=0.072  Sum_probs=72.1

Q ss_pred             ChhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecccccccc-----CCChhhHHHHHHHHHHh
Q 020079          123 TIDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAIT-----KWDEVVSDEMEVMVKEK  195 (331)
Q Consensus       123 ~~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  195 (331)
                      +++++ +.-.+.+.++|+..++-+-...+. +....++..++.+.......++.+...     ..+.+...++.+.+.+.
T Consensus       622 ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~  701 (1143)
T TIGR01235       622 YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA  701 (1143)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc
Confidence            44444 334567789999999854333332 566667777776655444444443221     12233333333333367


Q ss_pred             CCCeEEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCCC
Q 020079          196 GINSFKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGITG  255 (331)
Q Consensus       196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~~  255 (331)
                      |++.|.+- +.  .-...+.....++...++ .++++++|+++........ -...+.|...
T Consensus       702 Gad~I~ik-Dt--~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~  760 (1143)
T TIGR01235       702 GAHILGIK-DM--AGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDV  760 (1143)
T ss_pred             CCCEEEEC-CC--cCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCE
Confidence            88876431 11  223467777777776654 4899999997765543332 2234566543

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=84.11  E-value=26  Score=31.38  Aligned_cols=66  Identities=26%  Similarity=0.317  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      .++..+++++.|++.+-+.++. |+.    +..+.+.|+++-+   ..++|+..|-.+.-.. +..+...+.|+.
T Consensus       157 peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~iPLVlHGgSG~~~-e~~~kai~~Gi~  227 (284)
T PRK12737        157 PDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIRE---KVSIPLVLHGASGVPD-EDVKKAISLGIC  227 (284)
T ss_pred             HHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCCCCCCH-HHHHHHHHCCCe
Confidence            4677778877899988665443 433    3456666766644   4489999996443222 223445666664

>PRK08005 epimerase; Validated

Probab=83.50  E-value=27  Score=29.72  Aligned_cols=47  Identities=4%  Similarity=-0.013  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079          185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~  235 (331)
                      .++++++. +.|++.+.+ .++.+..+  .+.++.++++.+.   ...++.+|.
T Consensus        16 ~~el~~l~-~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~---t~~~~DvHL   65 (210)
T PRK08005         16 AEALTALH-DAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ---TRHPLSFHL   65 (210)
T ss_pred             HHHHHHHH-HCCCCEEEEeccCCCcCCccccCHHHHHHHHhc---CCCCeEEEe
Confidence            35555555 678887754 33444433  3456777766543   478999995

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=83.02  E-value=16  Score=32.57  Aligned_cols=68  Identities=12%  Similarity=0.119  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEec-CCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAY-KGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      ..++..+++++.|++.+.+.++. |+.+   ..+.+.++++.+   ..++|+..|-.+.-..++ .+...+.|+..
T Consensus       154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~---~~~vPLVlHGgSG~~~e~-~~~ai~~Gi~K  225 (283)
T PRK07998        154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAE---VSPVPLVIHGGSGIPPEI-LRSFVNYKVAK  225 (283)
T ss_pred             CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHh---hCCCCEEEeCCCCCCHHH-HHHHHHcCCcE
Confidence            34666778867899988765432 4433   344556665544   459999999654332222 34456666643

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=83.02  E-value=29  Score=31.03  Aligned_cols=66  Identities=23%  Similarity=0.301  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      .++..+++++.|++.+-+.++. |+.    +..+.+.|+++.+   +.++|+..|-.+.-.. +..++..+.|+.
T Consensus       155 peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~---~~~iPLVlHGgSG~~~-e~~~~ai~~Gi~  225 (282)
T TIGR01858       155 PQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIRE---VVDVPLVLHGASDVPD-EDVRRTIELGIC  225 (282)
T ss_pred             HHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHH---HhCCCeEEecCCCCCH-HHHHHHHHcCCe
Confidence            4667777777899988665543 433    3456677776654   4589999996543322 223455666654

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=82.87  E-value=24  Score=30.51  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=26.0

Q ss_pred             hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      .-++.+|+.  +......+.+.+++.++.|+++|+++..
T Consensus        23 ~yID~lKfg--~Gt~~l~~~~~l~eki~la~~~~V~v~~   59 (237)
T TIGR03849        23 DYITFVKFG--WGTSALIDRDIVKEKIEMYKDYGIKVYP   59 (237)
T ss_pred             hheeeEEec--CceEeeccHHHHHHHHHHHHHcCCeEeC
Confidence            345777763  3333445668899999999999998753

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=82.62  E-value=30  Score=34.44  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             hhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079          124 IDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK  201 (331)
Q Consensus       124 ~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik  201 (331)
                      +++. ....+.+.++|+..++-+....+. +....++..++.+........+........+...+.++++. +.|++.|.
T Consensus        94 pd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~-~~Gad~I~  172 (592)
T PRK09282         94 PDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE-EMGCDSIC  172 (592)
T ss_pred             cchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH-HcCCCEEE
Confidence            4443 344667888999988744322222 44455555555543322222222221112223344444554 67888764


Q ss_pred             EEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCC
Q 020079          202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGI  253 (331)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~  253 (331)
                      +- +..  -...++.+.++++..++ .++++++|+++........ -...+.|.
T Consensus       173 i~-Dt~--G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGa  223 (592)
T PRK09282        173 IK-DMA--GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGV  223 (592)
T ss_pred             EC-CcC--CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCC
Confidence            32 222  23467788888777655 4899999987765543322 22345554

>PRK12999 pyruvate carboxylase; Reviewed

Probab=82.22  E-value=32  Score=37.24  Aligned_cols=128  Identities=13%  Similarity=0.067  Sum_probs=66.8

Q ss_pred             hhhHHHH-HHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccc-----cCCChhhHHHHHHHHHHhC
Q 020079          124 IDDFFSG-QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAI-----TKWDEVVSDEMEVMVKEKG  196 (331)
Q Consensus       124 ~~~~~~~-~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g  196 (331)
                      +++.... .+.+.++|+..++-+-...+. +....++..++.+......+++.+..     ...+.+...++.+.+.+.|
T Consensus       625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G  704 (1146)
T PRK12999        625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG  704 (1146)
T ss_pred             CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            4444443 677889999998844222211 34444455554443223333333111     1123333333333333678


Q ss_pred             CCeEEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          197 INSFKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      ++.|.+- +.  .-..+++....++...++ .++++++|+++........ -...+.|..
T Consensus       705 a~~i~ik-Dt--~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad  761 (1146)
T PRK12999        705 AHILAIK-DM--AGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVD  761 (1146)
T ss_pred             CCEEEEC-Cc--cCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCC
Confidence            8876431 11  223567777777776654 4899999997766544332 224455654

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=81.37  E-value=31  Score=31.21  Aligned_cols=115  Identities=13%  Similarity=0.037  Sum_probs=64.2

Q ss_pred             HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEc--CCchhhHHHHHHHHHcCCCCccccccc
Q 020079          188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHA--ENGDAVFEGQKRMIELGITGPEGHALS  262 (331)
Q Consensus       188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~--e~~~~~~~~~~~~~~~G~~~~~~~~~~  262 (331)
                      ++.+. ..|++++-+..+.......+.++-+++++.+.+.   .+++.+|+  .+..+.-+..+...+.|..+--.....
T Consensus        35 v~~li-~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~  113 (309)
T cd00952          35 VERLI-AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPM  113 (309)
T ss_pred             HHHHH-HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence            33344 5788887544333344567788777777655443   47888886  345555455566777787543211110


Q ss_pred             -CChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCH----HHHHHHHHHH
Q 020079          263 -RPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM----DAMEEIAKAR  304 (331)
Q Consensus       263 -~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~----~~~~~i~~~~  304 (331)
                       .+.. +...++-+-.++... +.++.+-|++..    -..+.++++.
T Consensus       114 y~~~~-~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~  160 (309)
T cd00952         114 WLPLD-VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA  160 (309)
T ss_pred             CCCCC-HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence             1111 222333344555666 589888888742    2345566665

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid

Probab=81.31  E-value=29  Score=32.27  Aligned_cols=50  Identities=14%  Similarity=0.105  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhcCCCE-EEEeCCCHHHHH---HHHHHHHcCCCE--EEecCCccc
Q 020079          270 EATTRAIRLAEFVNTPL-YVVHVMSMDAME---EIAKARKAGPNF--LNTTIPLCD  319 (331)
Q Consensus       270 ~~i~~~~~l~~~~g~~~-~i~H~~~~~~~~---~i~~~~~~Gi~v--~~~~~p~~~  319 (331)
                      ..+++..++..+.|.++ +++|.......+   ...+..++|..+  ...++|++.
T Consensus       200 ~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~  255 (387)
T cd01308         200 RALSPIFELIEETEIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSIDPQFR  255 (387)
T ss_pred             HHHHHHHHHHHhcCCCcceeECCcccCCHHHHHHHHHHHHcCCcEEEECCCCcccc
Confidence            45666767777778776 777766543323   233344455544  345677655

Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=81.27  E-value=37  Score=29.74  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=20.1

Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcCCchhhHH
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAENGDAVFE  243 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~  243 (331)
                      ..+.++.+.+.+++.|+++..=..+...++.
T Consensus        64 G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~   94 (250)
T PRK13397         64 GLQGIRYLHEVCQEFGLLSVSEIMSERQLEE   94 (250)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHH
Confidence            4567777777777778777665544444433

>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]

Probab=81.23  E-value=10  Score=33.23  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=23.2

Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                      +.+.+..+++.|++.|.+++.|.|+.+.
T Consensus       143 ~n~vl~~a~elA~dvdc~vqLHtes~~~  170 (285)
T COG1831         143 SNEVLEYAMELAKDVDCAVQLHTESLDE  170 (285)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEecCCCCh
Confidence            3466788999999999999999987543

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=81.20  E-value=30  Score=30.94  Aligned_cols=110  Identities=14%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPLL  267 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~  267 (331)
                      +.|++++-+..+.......+.++-+++++.+.+.   .+++.+|+.  +..+..+..+.+.+.|..+--..+.. .+. .
T Consensus        33 ~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~  111 (292)
T PRK03170         33 ANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKP-T  111 (292)
T ss_pred             HcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-C
Confidence            5788877543332334556777777776655553   478888863  44444444466777777543211111 111 1


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHH
Q 020079          268 EGEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKAR  304 (331)
Q Consensus       268 e~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~  304 (331)
                      +...++-.-+++...+.++.+-+++..    -..+.++++.
T Consensus       112 ~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~  152 (292)
T PRK03170        112 QEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA  152 (292)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence            223344455566666788888887631    1345666664

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=81.15  E-value=38  Score=29.87  Aligned_cols=44  Identities=9%  Similarity=0.021  Sum_probs=29.9

Q ss_pred             HHHHHhCCCeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          190 VMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       190 ~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      +.+++.|.+++.+.....    .....+++.++++.+.++++|+.+..
T Consensus        28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~   75 (283)
T PRK13209         28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS   75 (283)
T ss_pred             HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence            333378998887754321    11234678888999999999998754

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=81.02  E-value=32  Score=30.45  Aligned_cols=112  Identities=13%  Similarity=0.057  Sum_probs=60.5

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCcccccccCChHHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALSRPPLLE  268 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e  268 (331)
                      +.|++++-+..+.......+.++-+++++.+.+.   .+++.+|+.  +..+..+..+...+.|..+--..+.......+
T Consensus        29 ~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~  108 (281)
T cd00408          29 EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQ  108 (281)
T ss_pred             HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCH
Confidence            5688877443333334556777777777666543   478888863  33334444456677777543221111101112


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHH
Q 020079          269 GEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARK  305 (331)
Q Consensus       269 ~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~  305 (331)
                      ...++-...++...+.++.+-+.+..    -..+.++++.+
T Consensus       109 ~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~  149 (281)
T cd00408         109 EGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE  149 (281)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence            23344455566666788888877642    12455666554

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=80.84  E-value=31  Score=31.18  Aligned_cols=50  Identities=20%  Similarity=0.186  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CCC------CcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KGS------FMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .++..+++++.|++.+-+.++. |+.      +..+.+.|+++   .++.++|+.+|-.+
T Consensus       157 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I---~~~~~iPLVLHGgS  213 (307)
T PRK05835        157 PKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEV---KRLTNIPLVLHGAS  213 (307)
T ss_pred             HHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHH---HHHhCCCEEEeCCC
Confidence            4667778867899987665432 433      33556666665   44559999999543

>PRK09230 cytosine deaminase; Provisional

Probab=80.76  E-value=14  Score=35.12  Aligned_cols=69  Identities=6%  Similarity=-0.106  Sum_probs=35.2

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCC---cEEEEcCCch-----hhHHHHHHHHHcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGA---LAMVHAENGD-----AVFEGQKRMIELGI  253 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~---~v~~H~e~~~-----~~~~~~~~~~~~G~  253 (331)
                      .+.++.+.+++++.|. .+.+..+...  .......+..++..++.|+   .+..|+..-.     ......+.+.+.|.
T Consensus       194 ~e~l~~~~~~A~~~g~-~~~~H~~E~~--~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv  270 (426)
T PRK09230        194 VESLHKAFALAQKYDR-LIDVHCDEID--DEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI  270 (426)
T ss_pred             HHHHHHHHHHHHHhCC-CcEEEECCCC--CcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCC
Confidence            3456666666645554 3444443221  1112235567777777775   4677864331     12233455666664

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=80.54  E-value=37  Score=29.31  Aligned_cols=32  Identities=16%  Similarity=0.021  Sum_probs=22.3

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      |+|.|+|....  +..   .+....+.|.+-|...+.
T Consensus         3 ~~DlHvHt~~d--~~~---~~~e~i~~A~~~Gl~~i~   34 (237)
T PRK00912          3 FYDLNVHAVPD--GYD---TVLRLISEASHLGYSGIA   34 (237)
T ss_pred             ceEeccCCCCC--Ccc---hHHHHHHHHHHCCCCEEE
Confidence            68999998422  333   344447888899998776

>PRK10657 isoaspartyl dipeptidase; Provisional

Probab=80.38  E-value=32  Score=32.03  Aligned_cols=58  Identities=10%  Similarity=0.146  Sum_probs=36.7

Q ss_pred             CChHHHHHHHHHHHHHHHhcCCC--EEEEeCC-CHHHHHHHHHH-HHcCCCEEEecCCccccc
Q 020079          263 RPPLLEGEATTRAIRLAEFVNTP--LYVVHVM-SMDAMEEIAKA-RKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       263 ~~~~~e~~~i~~~~~l~~~~g~~--~~i~H~~-~~~~~~~i~~~-~~~Gi~v~~~~~p~~~~~  321 (331)
                      .+...+...+.+..+.+...+.+  .++.|++ +..+++.++++ ++.|+.+.. +|++|...
T Consensus       167 ~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~-~~~~H~~~  228 (388)
T PRK10657        167 QPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQ-FLPTHVNR  228 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcce-eeCcccCC
Confidence            34444444455555544444432  6788887 46777777544 688988885 88888664

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=80.21  E-value=41  Score=29.66  Aligned_cols=45  Identities=9%  Similarity=-0.025  Sum_probs=30.5

Q ss_pred             HHHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEE
Q 020079          188 MEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAM  232 (331)
Q Consensus       188 ~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~  232 (331)
                      .-+.+.+.|.+++.+.+....    ....+.+.+.++.+..+++|+.+.
T Consensus        21 ~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~   69 (279)
T TIGR00542        21 RLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP   69 (279)
T ss_pred             HHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence            334444789998877654321    123467788888889999999875

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=80.10  E-value=53  Score=30.82  Aligned_cols=178  Identities=19%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             hhhHHHHHHHHHhCCceEEecCcCCC--------CCcHHHHHHHHHHHhccceeec---ccc-ccccCCChhhHHHHHHH
Q 020079          124 IDDFFSGQAAALAGGTTMHIDFVIPI--------NGSLTAGFEAYEKKAKNSCMDY---GFH-MAITKWDEVVSDEMEVM  191 (331)
Q Consensus       124 ~~~~~~~~~~~l~~GvTtv~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~  191 (331)
                      .+++.-.+..+=+.|+.++--.++..        +.+-++.++..++.-++..+..   +.. .+.....++..+...+.
T Consensus        27 t~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~k  106 (472)
T COG5016          27 TEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEK  106 (472)
T ss_pred             HHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHH
Confidence            44554445556678888876443211        2245666666666655533321   111 22333445554444444


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-cCCchh---hHH---HHHHHHHcCCCCccc---ccc
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGDA---VFE---GQKRMIELGITGPEG---HAL  261 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~e~~~~---~~~---~~~~~~~~G~~~~~~---~~~  261 (331)
                      .-++|.+.|.+|-..+     +..-++..++.++++|.-+.+- +.+.+.   ++.   ....+.+.|+...-.   .+.
T Consensus       107 a~~nGidvfRiFDAlN-----D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGl  181 (472)
T COG5016         107 AAENGIDVFRIFDALN-----DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGL  181 (472)
T ss_pred             HHhcCCcEEEechhcc-----chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccccc
Confidence            4378999998875432     6678999999999999955443 222211   111   224466777643210   011


Q ss_pred             cCChHHHHHHHHHHHHHHHhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079          262 SRPPLLEGEATTRAIRLAEFVNTPLYV-VHVMSMDAMEEIAKARKAGPNF  310 (331)
Q Consensus       262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v  310 (331)
                      ..|    ..+.+-.-.+-+..+.++++ +|++++-+..-.-++-++|+.+
T Consensus       182 ltP----~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~  227 (472)
T COG5016         182 LTP----YEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDG  227 (472)
T ss_pred             CCh----HHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcch
Confidence            112    22233333444555776544 4776655544555667788764

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=80.09  E-value=44  Score=29.96  Aligned_cols=117  Identities=16%  Similarity=0.079  Sum_probs=61.7

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH---cCCcEEEEcC--CchhhHHHHHHHHHcCCCCcccccc-cCChHH
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS---LGALAMVHAE--NGDAVFEGQKRMIELGITGPEGHAL-SRPPLL  267 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~---~g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~  267 (331)
                      +.|++++-+.-+.......+.++-.++++.+.+   ...+|.+|+.  +..+.-+..+...+.|..+--.... -.++ .
T Consensus        32 ~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~-~  110 (294)
T TIGR02313        32 EGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKP-N  110 (294)
T ss_pred             HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-C
Confidence            578887644333333445677776666665433   2478888863  3333333445567777654221111 0111 1


Q ss_pred             HHHHHHHHHHHHHhc-CCCEEEEeCCCHH----HHHHHHHHHHcCCCEE
Q 020079          268 EGEATTRAIRLAEFV-NTPLYVVHVMSMD----AMEEIAKARKAGPNFL  311 (331)
Q Consensus       268 e~~~i~~~~~l~~~~-g~~~~i~H~~~~~----~~~~i~~~~~~Gi~v~  311 (331)
                      +...++-+..++... +.++.+-+++...    ..+.+.++.++--||.
T Consensus       111 ~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~  159 (294)
T TIGR02313       111 QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIV  159 (294)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEE
Confidence            223344455666667 7888888876421    2456666654333443

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
2ftw_A	521	Crystal Structure Of Dihydropyrimidinase From Dicty		8e-71
2vr2_A	541	Human Dihydropyrimidinase Length = 541		5e-70
3dc8_A	490	Crystal Structure Of Dihydropyrimidinase From Sinor		7e-63
1kcx_A	518	X-Ray Structure Of Nysgrc Target T-45 Length = 518		5e-62
2gse_A	501	Crystal Structure Of Human Dihydropyrimidinease-Lik		2e-59
4b91_A	484	Crystal Structure Of Truncated Human Crmp-5 Length		4e-56
4b90_A	586	Crystal Structure Of Wt Human Crmp-5 Length = 586		6e-56
1yny_A	461	Molecular Structure Of D-Hydantoinase From A Bacill		1e-51
3sfw_A	461	Crystal Structure Of Dihydropyrimidinase From Brevi		6e-51
1k1d_A	460	Crystal Structure Of D-Hydantoinase Length = 460		3e-47
1nfg_A	457	Structure Of D-Hydantoinase Length = 457		7e-39
1gkp_A	458	D-Hydantoinase (Dihydropyrimidinase) From Thermus S		2e-37
2fty_A	559	Crystal Structure Of Dihydropyrimidinase From Sacch		7e-26
3hm7_A	448	Crystal Structure Of Allantoinase From Bacillus Hal		2e-18
3e74_A	473	Crystal Structure Of E. Coli Allantoinase With Iron		2e-17
1gkr_A	458	L-Hydantoinase (Dihydropyrimidinase) From Arthrobac		4e-16
3gri_A	424	The Crystal Structure Of A Dihydroorotase From Stap		2e-09
3mpg_A	428	Dihydroorotase From Bacillus Anthracis Length = 428		7e-07
2z00_A	426	Crystal Structure Of Dihydroorotase From Thermus Th		7e-06
1xrf_A	467	The Crystal Structure Of A Novel, Latent Dihydrooro		6e-05
3d6n_A	422	Crystal Structure Of Aquifex Dihydroorotase Activat		7e-05
3ooq_A	396	Crystal Structure Of Amidohydrolase From Thermotoga		5e-04

>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521

Iteration: 1
 Score =  263 bits (673), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 137/262 (52%), Positives = 173/262 (66%), Gaps = 4/262 (1%)
Query: 49  IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
           +  +  ILIK GTVVN      +DV VE+GI+  +  NI   + +KV+DAT K ++PGGI
Sbjct: 4   VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
           D HTH  + FMG+ ++DDF  G  AA+AGGTT  IDFVIP  G SL   ++ ++K A  K
Sbjct: 64  DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
            +C DY  H+AIT W               G+NSF  FMAYK SFM+ D+ +   FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFXCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
            LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP  LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAG 307
           +Y+VHV S+ A + I K RK G
Sbjct: 243 VYIVHVQSIGAADVICKHRKEG 264

>pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541

Iteration: 1
 Score =  261 bits (666), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/265 (51%), Positives = 167/265 (63%), Gaps = 6/265 (2%)
Query: 49  IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVM 104
           + + S++LI+GG VVN    ++ADV VEDG+V A+     P       ++VLDA GK V+
Sbjct: 23  MAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVL 82
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
           PGGID HTH+   FMGS +IDDF  G  AAL+GGTTM IDF IP  G SL   FE +   
Sbjct: 83  PGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSW 142
Query: 164 AK-NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFK 222
           A    C DY  H+A+T W               G+NSFK FMAYK  +M+ D  L E F 
Sbjct: 143 ADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS 202
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
           RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP  +E EAT RAI +A  V
Sbjct: 203 RCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAV 262
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAG 307
           N PLY+VHVMS  A + IA AR+ G
Sbjct: 263 NCPLYIVHVMSKSAAKVIADARRDG 287

>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490

Iteration: 1
 Score =  237 bits (605), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 158/253 (62%), Gaps = 4/253 (1%)
Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
           +IKGGT+V A     ADV VE G +V + PN++     + LDATG +VMPGGIDPHTHL 
Sbjct: 4   VIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS---GAETLDATGCYVMPGGIDPHTHLE 60
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFH 174
           M FMG+ + DDF SG  AALAGGTTM +DF +P  G SL      ++ K+  +  DY FH
Sbjct: 61  MPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFH 120
Query: 175 MAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234
           MAIT W               GIN+F  FMAYKG+ M++D+ +   F+RC +LGAL +VH
Sbjct: 121 MAITWWGEQVFNEMETIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGALPLVH 180
Query: 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294
           AENGD V + Q +++  G +GPE HA SRP  +EGEA  RAI +A+    P+Y+VH    
Sbjct: 181 AENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSCE 240
Query: 295 DAMEEIAKARKAG 307
            A E I +AR  G
Sbjct: 241 QAHEAIRRARAKG 253

>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518

Iteration: 1
 Score =  234 bits (597), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 162/260 (62%), Gaps = 2/260 (0%)
Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LI+GG ++N      ADVY+EDG++  +  N+ V   VK ++A G+ V+PGGID 
Sbjct: 6   TSDRLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDV 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK-NSC 168
           +T+L     G  + DDFF G  AALAGGTTM ID V+P  GS L   FE + + A   SC
Sbjct: 66  NTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSC 125
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ IT W               G+NSF+ +MAYK  + ++D  L E F   K LG
Sbjct: 126 CDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+ +VHAENGD + + QKR++E+GITGPEGHALSRP  LE EA  RAI +A  +N P+Y+
Sbjct: 186 AVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRINCPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGP 308
             VMS  A + IA ARK GP
Sbjct: 246 TKVMSKSAADIIALARKKGP 265

>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 158/259 (61%), Gaps = 2/259 (0%)
Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LIKGG +VN      AD+Y+EDG++  +  N+ V   VK ++A  + V+PGGID 
Sbjct: 24  TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SC 168
           HT   M   G  + DDFF G  AALAGGTTM ID V+P  G SL A F+ + + A + SC
Sbjct: 84  HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ I++W               G+NSF  +MA+K  F + D  + E     + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD + E Q+R+++LGITGPEGH LSRP  +E EA  RAI +A   N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAG 307
             VMS  + E IA+ARK G
Sbjct: 264 TKVMSKSSAEVIAQARKKG 282

>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484

Iteration: 1
 Score =  215 bits (547), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 154/268 (57%), Gaps = 6/268 (2%)
Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S +ILIKGG VVN      ADVY+E+GI+  V   + +    KV+DATGK V+PGGID 
Sbjct: 7   ASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGIDT 66
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK----KAKN 166
            TH    FM +  +DDF+ G  AAL GGTTM I  V+P     T+  +AYEK        
Sbjct: 67  STHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLP--DKETSLVDAYEKCRGLADPK 124
Query: 167 SCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
            C DY  H+ IT W               G+NSF+ FM YK  +M+ D  L +    CK 
Sbjct: 125 VCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKD 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
           +GA+A VHAENG+ V EG K  ++LGITGPEG  +SRP  LE EAT R I +A   + P+
Sbjct: 185 IGAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPI 244
Query: 287 YVVHVMSMDAMEEIAKARKAGPNFLNTT 314
           Y+V+V S+ A + IA A+  G   L  T
Sbjct: 245 YLVNVSSISAGDVIAAAKMQGKVVLAET 272

>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586

Iteration: 1
 Score =  214 bits (545), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 154/268 (57%), Gaps = 6/268 (2%)
Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S +ILIKGG VVN      ADVY+E+GI+  V   + +    KV+DATGK V+PGGID 
Sbjct: 28  ASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGIDT 87
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK----KAKN 166
            TH    FM +  +DDF+ G  AAL GGTTM I  V+P     T+  +AYEK        
Sbjct: 88  STHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLP--DKETSLVDAYEKCRGLADPK 145
Query: 167 SCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
            C DY  H+ IT W               G+NSF+ FM YK  +M+ D  L +    CK 
Sbjct: 146 VCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKD 205
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
           +GA+A VHAENG+ V EG K  ++LGITGPEG  +SRP  LE EAT R I +A   + P+
Sbjct: 206 IGAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPI 265
Query: 287 YVVHVMSMDAMEEIAKARKAGPNFLNTT 314
           Y+V+V S+ A + IA A+  G   L  T
Sbjct: 266 YLVNVSSISAGDVIAAAKMQGKVVLAET 293

>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461

Iteration: 1
 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 151/265 (56%), Gaps = 3/265 (1%)
Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           K  I+GGTVV A     ADV +E   VVA+   ++V +  + +DATG +V+PGGIDPHTH
Sbjct: 2   KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSV-NGAEEIDATGCYVIPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
           L M F G+ T DDFF+G  AA  GGTT  +DF +   G SL +    + +KA+  + +DY
Sbjct: 61  LDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
           GFH+ I +                GI S K FMAYK  F  +DE L +   + K LGAL 
Sbjct: 121 GFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
            VHAENGD +    K+ +  G T P  HA +RPP  EGEAT RAI L     + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGPNFLNTTIP 316
               A++ IA+AR+ G N    T P
Sbjct: 241 SCASAVQRIAEAREKGWNVYGETCP 265

>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461

Iteration: 1
 Score =  197 bits (502), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 114/265 (43%), Positives = 149/265 (56%), Gaps = 3/265 (1%)
Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           K  I+ GTVV A     ADV ++   VVA+  ++    D +V+DATG +++PGGIDPHTH
Sbjct: 2   KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQ-ATDAEVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
           L M F G+ T D+FF+G  AA  GGTT  +DF +   G SL +    + +KA+  + +DY
Sbjct: 61  LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
           GFH+ ++                 GI S   FMAYK   M +DE L +   R K LGAL 
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
            VHAENGD +    K+ +  G T P  HA +RPP  EGEAT RAI L    +  LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGPNFLNTTIP 316
              DA+  IA+AR+ G N    T P
Sbjct: 241 SCADAVRRIAEAREKGWNVYGETCP 265

>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/263 (42%), Positives = 142/263 (53%), Gaps = 3/263 (1%)
Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
           +IK GT+V A     A + ++DG +  +  N+      +V+DA G +V PGGIDPHTHL 
Sbjct: 4   IIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE-EKGAEVIDAKGCYVFPGGIDPHTHLD 62
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK-NSCMDYGF 173
           M   G+ T DDF SG  AA  GGTT  IDF +   G  L    E +  KA   + +DYGF
Sbjct: 63  MPLGGTVTKDDFESGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNKANGKAVIDYGF 122
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
           H+ I++                GI S   FMAYK  F  +D  L       K LGAL MV
Sbjct: 123 HLMISEITDDVLEELPKVLEEEGITSLXVFMAYKNVFQADDGTLYCTLLAAKELGALVMV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
           HAENGD +    K+ +  G T P  HAL+RPP LEGEAT RA +L E   + LYVVHV  
Sbjct: 183 HAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTELAGSQLYVVHVTC 242
Query: 294 MDAMEEIAKARKAGPNFLNTTIP 316
             A+E+IA+AR  G +    T P
Sbjct: 243 AQAVEKIAEARNKGLDVWGETCP 265

>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457

Iteration: 1
 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 142/262 (54%), Gaps = 5/262 (1%)
Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           I+IK GT+V A     AD+ ++DG +   Q    +G   + +DA G++V PGGID HTH+
Sbjct: 3   IIIKNGTIVTADGISRADLGIKDGKIT--QIGGALGPAERTIDAAGRYVFPGGIDVHTHV 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
                 +++ D F +   AA  GGTT  +DF     G SL      ++  A   S +DYG
Sbjct: 61  ETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYG 120
Query: 173 FHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           +H+ +                  GI SF  FMAY+G  MI+D  L++   +    G+L M
Sbjct: 121 YHIIVLD-PTDSVIEELEVLPDLGITSFXVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVM 179
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
           VHAENGDA    + + +  G T P  HALSRPP +E EAT RA+ LAE VN P+Y+VHV 
Sbjct: 180 VHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVT 239
Query: 293 SMDAMEEIAKARKAGPNFLNTT 314
             +++EE+ +A+  G   L  T
Sbjct: 240 CEESLEEVMRAKSRGVRALAET 261

>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 4/265 (1%)
Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LIK G ++ A  +  AD+Y E   +  +  N+      +V+DATGK+V PG IDPH H+
Sbjct: 2   LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSCMDYG 172
            + FM +   D   +G  AAL GGTT +I+   P  N     G++ ++ KA+ NS  DY 
Sbjct: 62  YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           FHMA++K+               GI+SF  F++YK  F ++D  + +  +  K LG +  
Sbjct: 122 FHMAVSKF-DEKTEGQLREIVADGISSFXIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
            H EN + V   Q++++  G TGPE H  SRP  +E E T R     E      YVVH+ 
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAG-PNFLNTTIP 316
              A++    A+  G P ++ + IP
Sbjct: 241 CKPALDAAMAAKARGVPIYIESVIP 265

>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 129/278 (46%), Gaps = 18/278 (6%)
Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++IK G +  A     A++ V +G V  +  +I+     +V+DA G F+ PGGID H H+
Sbjct: 5   LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 --AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI-------PINGSLTAGFEAYEKKAK 165
              ++ +G + +D       +A+AGGTT  + F         P   + +   +  E   +
Sbjct: 65  DEPLKLLG-DVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQ 123
Query: 166 NSCMDYGFHMAI-------TKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLI 218
               DYG H+ +        +                G++S   FM Y G   I+D  ++
Sbjct: 124 TLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVXMFMTYPG-LQISDYDIM 182
Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRL 278
                 +  G   M+HAENGD V    + + E G+T    H +SRP ++EGEAT RAI L
Sbjct: 183 SAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITL 242
Query: 279 AEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
           A  ++TP+  VHV S  A E I +A+  G      T P
Sbjct: 243 ATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCP 280

>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 17/255 (6%)
Query: 71  ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129
           ADV + +GIV A+ +P     DD   +D TG  + PG +D H H      G    + F S
Sbjct: 24  ADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEGFAS 81
Query: 130 GQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEKKAK----NSCMDYGFHMAITKWXXXX 184
           G  +  AGG T + D  +P+N +  T   E  +KK +     S +DY F   +       
Sbjct: 82  GSKSLAAGGVTTYFD--MPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVP----G 135
Query: 185 XXXXXXXXXXXGINSFKFFMAYKGS--FMIN-DELLIEGFKRCKSLGALAMVHAENGDAV 241
                      G+  FK FM+  G+  F  + DE L++G K+  +LG++  VHAE+ + V
Sbjct: 136 NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMV 195
Query: 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIA 301
                  IE      + ++ +RP + E EA  R +R A+    P+++ HV S   ++ I 
Sbjct: 196 NALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIK 255
Query: 302 KARKAGPNFLNTTIP 316
           +A+  G N    T P
Sbjct: 256 QAKGEGVNVSVETCP 270

>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 125/288 (43%), Gaps = 40/288 (13%)
Query: 52  SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
           S  ++IK GTV+  +  ++ D+ V+ G + A+  ++  GD  +V DA+G  V PG +D H
Sbjct: 22  SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVXDASGLVVSPGXVDAH 79
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
           TH++    G    + + +G  AA  GG T  I+   P+N         S+   F+A + K
Sbjct: 80  THISEP--GRSHWEGYETGTRAAAKGGITTXIE--XPLNQLPATVDRASIELKFDAAKGK 135
Query: 164 AKNSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMI-------NDEL 216
                   G  ++                   G+  F  F+A  G   I       ND  
Sbjct: 136 LTIDAAQLGGLVSYN-------IDRLHELDEVGVVGFXCFVATCGDRGIDNDFRDVNDWQ 188
Query: 217 LIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
             +G ++   LG   +VH EN    D + E  KR    G      +  SRP   E EA  
Sbjct: 189 FFKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEAIR 245
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321
           R + LA+     L+V HV S + +EE+ +AR+ G +        C+SC
Sbjct: 246 RVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDI------TCESC 287

>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 14/271 (5%)
Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +++K   +V++     AD+ V+DG V A+  + +  +  + +DA GKFVMPG +D H H+
Sbjct: 4   VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHI 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174
               + +         ++AA+ G TT+     +PI    T   +A+ +K K +       
Sbjct: 64  IDMDLKNRYGRFELDSESAAVGGITTI---IEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 175 MAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFM---INDELLIEGFKRCKSLGALA 231
            A+                  G   F   MA     M   ++D  L E F+   + G++ 
Sbjct: 121 FALYGGGVPGNLPEIRKMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAACGSVI 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
           +VHAEN   +   QK++   G      +  S+P   E EA  RA+ L +     L V+HV
Sbjct: 181 VVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHV 240
Query: 292 MSMDAMEEIAKAR--------KAGPNFLNTT 314
            + D +E I +A+        ++GP +LN T
Sbjct: 241 SNPDGVELIHQAQSEGQDVHCESGPQYLNIT 271

>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 105/267 (39%), Gaps = 37/267 (13%)
Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
           LIK G V+     Q AD+ ++  ++  + P I   + V ++DA G FV PG +D H HL 
Sbjct: 3   LIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLR 62
Query: 116 MEFMGSETIDDFFSGQAAALAGG--TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF 173
               G E  +   +G  AA  GG  T        P+  S+   FEA +K      +D   
Sbjct: 63  EP--GGEYKETIETGTKAAARGGFTTVCPXPNTRPVPDSVEH-FEALQK-----LIDDNA 114
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKF-FMAYKGSFMINDE--------LLIEGFKRC 224
            + +  +               G     F  +  +G+F   D+           EG    
Sbjct: 115 QVRVLPY-------ASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASXXYEGXIEA 167
Query: 225 KSLGALAMVHAENGDAVFEGQ----KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280
             +    + H E+   ++ G     KR  ELGI G        P + E     R + LAE
Sbjct: 168 AKVNKAIVAHCEDNSLIYGGAXHEGKRSKELGIPG-------IPNICESVQIARDVLLAE 220
Query: 281 FVNTPLYVVHVMSMDAMEEIAKARKAG 307
                 +V HV + +++  I  A++AG
Sbjct: 221 AAGCHYHVCHVSTKESVRVIRDAKRAG 247

>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 56  LIKGGTVVNAHHQQIA-DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           L K G  +N   + +A D+ V+DG +  V  NI   D+ +V+D  GK + PG +D H HL
Sbjct: 4   LFKNGRYMNEEGKIVATDLLVQDGKIAKVAENI-TADNAEVIDVNGKLIAPGLVDVHVHL 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-------KKAKNS 167
                G E  +   +G  AA  GG T      +P    +    E  E       +KA  +
Sbjct: 63  REP--GGEHKETIETGTLAAAKGGFTTIC--AMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
            + YG   AIT                 G     F     G  + +  +++   KR   L
Sbjct: 119 VLPYG---AITVRQAGSEMTDFETLKELG----AFAFTDDGVGVQDASMMLAAMKRAAKL 171
Query: 228 GALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR-PPLLEGEATTRAIRLAEF 281
               + H E     N   V EG+           E H L+  P + E     R I LAE 
Sbjct: 172 NMAVVAHCEENTLINKGCVHEGKFS---------EKHGLNGIPSVCESVHIARDILLAEA 222
Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP----LCDS 320
            +   +V HV +  ++  I  A++AG        P    LC+ 
Sbjct: 223 ADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCED 265

>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 55  ILIKGGTVVNAHHQQ-IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           ILI+   +V+A  ++  ADV + +G +++++     G+  +V+D TG F+ PG +D H H
Sbjct: 2   ILIRNVRLVDARGERGPADVLIGEGRILSLE----GGEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTT 140
           L     G E  +D FSG  AA+ GG T
Sbjct: 58  LREP--GEEVKEDLFSGLLAAVRGGYT 82

>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 54  KILIKGGTVVNAHHQQIA--DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
           K+++K G V++         D+ VE+G +  +  NI V  + +++DA G  V PG ID H
Sbjct: 48  KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILV-PEAEIIDAKGLIVCPGFIDIH 106
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTT 140
            HL     G    +D  SG   A+AGG T
Sbjct: 107 VHLRDP--GQTYKEDIESGSRCAVAGGFT 133

>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 54  KILIKGGTVVNAHHQQIA--DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
           K+++K G V++         D+ VE+G +  +  NI V  + +++DA G  V PG ID H
Sbjct: 3   KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILV-PEAEIIDAKGLIVCPGFIDIH 61
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTT 140
            HL     G    +D  SG   A+AGG T
Sbjct: 62  VHLRDP--GQTYKEDIESGSRCAVAGGFT 88

>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga Maritima Msb8 Length = 396

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 52  SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           S KIL K  TV     +    DV V +G V  V  NI    D +++D TGKF+ PG +D 
Sbjct: 4   SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-DPDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM 116
           H+H+ +
Sbjct: 63  HSHIGL 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
3sfw_A	461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	1e-126
3dc8_A	490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	1e-126
1gkp_A	458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	1e-125
2vm8_A	501	Dihydropyrimidinase-related protein 2; neurogenesi	1e-123
1nfg_A	457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	1e-123
2vr2_A	541	Dihydropyrimidinase; hydantoinase, metal-binding,	1e-122
2ftw_A	521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	1e-121
1gkr_A	458	Hydantoinase, non-ATP dependent L-selective hydant	1e-113
2fty_A	559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	1e-108
3e74_A	473	Allantoinase; (beta/alpha)8-barrel domain, small b	2e-87
3hm7_A	448	Allantoinase; metallo-dependent hydrolase, protein	3e-87
2gwn_A	452	Dihydroorotase; zinc-binding prote structural geno	5e-44
3gri_A	424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	5e-26
3mpg_A	428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	7e-24
1e9y_B	569	Urease subunit beta; hydrolase, dodecamer; HET: KC	1e-23
1xrt_A	467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	3e-23
2ics_A	379	Adenine deaminase; TIM barrel, binuclear zinc, ade	2e-21
4ubp_C	570	Protein (urease (chain C)); bacillus pasteurii, ni	7e-21
2z00_A	426	Dihydroorotase; zinc binding protein, hydrolase, m	1e-19
2vun_A	386	Enamidase; nicotinate degradation, binuclear metal	3e-17
3nqb_A	608	Adenine deaminase 2; PSI-II, structural genomics,	5e-17
3ooq_A	396	Amidohydrolase; structural genomics, protein struc	5e-17
1onw_A	390	Isoaspartyl dipeptidase; amidohydrolase, hydrolase	7e-16
2ogj_A	417	Dihydroorotase; TIM barrel, binuclear zinc, imidaz	1e-15
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	1e-13
2qs8_A	418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	4e-13
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	9e-13
2qt3_A	403	N-isopropylammelide isopropyl amidohydrolase; N-is	1e-12
3h4u_A	479	Amidohydrolase; signature of Zn ligands, structura	3e-12
3ls9_A	456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	8e-12
1ra0_A	430	Cytosine deaminase; alpha-beta barrel, hexamer, co	1e-11
3be7_A	408	Zn-dependent arginine carboxypeptidase; unknown so	2e-11
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	2e-11
1ejx_C	567	Urease alpha subunit; alpha-beta barrel, nickel me	2e-11
1p1m_A	406	Hypothetical protein TM0936; putative metal depend	8e-11
2paj_A	492	Putative cytosine/guanine deaminase; NYSGXRC, PSI-	1e-10
4f0r_A	447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	2e-10
4dyk_A	451	Amidohydrolase; adenosine deaminase, nysgrc, struc	2e-10
4dzh_A	472	Amidohydrolase; adenosine deaminase, nysgrc, struc	2e-10
3gip_A	480	N-acyl-D-glutamate deacylase; amidohydrolase famil	4e-10
1rk6_A	496	D-aminoacylase; TIM barrel, beta barrel, insertion	1e-09
3lnp_A	468	Amidohydrolase family protein OLEI01672_1_465; TIM	1e-09
2p9b_A	458	Possible prolidase; protein structure initiative I	3e-09
2puz_A	419	Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino	3e-09
3iv8_A	381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	3e-09
2bb0_A	421	Imidazolonepropionase; TIM barrel, hydrolase; 2.00	6e-09
2q09_A	416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	1e-08
1yrr_A	382	N-acetylglucosamine-6-phosphate deacetylase; (beta	2e-08
2i9u_A	439	Cytosine/guanine deaminase related protein; protei	6e-08
3icj_A	534	Uncharacterized metal-dependent hydrolase; structu	9e-08
2imr_A	420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	1e-07
2vhl_A	396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	2e-07
3ggm_A	81	Uncharacterized protein BT9727_2919; bacillus cere	2e-07
3v7p_A	427	Amidohydrolase family protein; iron binding site,	3e-07
2ood_A	475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	8e-07
4f0l_A	458	Amidohydrolase; ssgcid, structural genomics, seatt	3e-06
1o12_A	376	N-acetylglucosamine-6-phosphate deacetylase; struc	3e-05
3mdu_A	453	N-formimino-L-glutamate iminohydrolase; amonohydra	2e-04
3la4_A	840	Urease; JACK bean, hydrolase, ME binding, nickel;	6e-04

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461

 Score =  368 bits (946), Expect = e-126
 Identities = 117/258 (45%), Positives = 158/258 (61%), Gaps = 3/258 (1%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           K  I+ GTVV A     ADV ++   VVA+  ++   D  +V+DATG +++PGGIDPHTH
Sbjct: 2   KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60

Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
           L M F G+ T D+FF+G  AA  GGTT  +DF +   G SL +    + +KA+  + +DY
Sbjct: 61  LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120

Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
           GFH+ ++  ++ V +E+E +V  +GI S K FMAYK   M +DE L +   R K LGAL 
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180

Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
            VHAENGD +    K+ +  G T P  HA +RPP  EGEAT RAI L    +  LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240

Query: 292 MSMDAMEEIAKARKAGPN 309
              DA+  IA+AR+ G N
Sbjct: 241 SCADAVRRIAEAREKGWN 258

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490

 Score =  368 bits (947), Expect = e-126
 Identities = 131/264 (49%), Positives = 170/264 (64%), Gaps = 4/264 (1%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
             +IKGGT+V A     ADV VE G +V + PN+      + LDATG +VMPGGIDPHTH
Sbjct: 2   STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58

Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172
           L M FMG+ + DDF SG  AALAGGTTM +DF +P  G SL      ++ K+  +  DY 
Sbjct: 59  LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYS 118

Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           FHMAIT W E V +EME +VK+KGIN+FK FMAYKG+ M++D+ +   F+RC +LGAL +
Sbjct: 119 FHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPL 178

Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
           VHAENGD V + Q +++  G +GPE HA SRP  +EGEA  RAI +A+    P+Y+VH  
Sbjct: 179 VHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238

Query: 293 SMDAMEEIAKARKAGPNFLNTTIP 316
              A E I +AR  G       + 
Sbjct: 239 CEQAHEAIRRARAKGMRVFGEPLI 262

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458

 Score =  366 bits (941), Expect = e-125
 Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 3/255 (1%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LIK G ++ A  +  AD+Y E   +  +  N+      +V+DATGK+V PG IDPH H+
Sbjct: 2   LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
            + FM +   D   +G  AAL GGTT +I+   P        G++ ++ KA+ NS  DY 
Sbjct: 62  YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121

Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
           FHMA++K+DE    ++  +V + GI+SFK F++YK  F ++D  + +  +  K LG +  
Sbjct: 122 FHMAVSKFDEKTEGQLREIVAD-GISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180

Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
            H EN + V   Q++++  G TGPE H  SRP  +E E T R     E      YVVH+ 
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240

Query: 293 SMDAMEEIAKARKAG 307
              A++    A+  G
Sbjct: 241 CKPALDAAMAAKARG 255

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501

 Score =  362 bits (931), Expect = e-123
 Identities = 123/268 (45%), Positives = 168/268 (62%), Gaps = 2/268 (0%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           +S ++LIKGG +VN      AD+Y+EDG++  +  N+ V   VK ++A  + V+PGGID 
Sbjct: 24  TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
           HT   M   G  + DDFF G  AALAGGTTM ID V+P  G SL A F+ + + A   SC
Sbjct: 84  HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+ I++W + + +EME +VK+ G+NSF  +MA+K  F + D  + E     + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203

Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD + E Q+R+++LGITGPEGH LSRP  +E EA  RAI +A   N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263

Query: 289 VHVMSMDAMEEIAKARKAGPNFLNTTIP 316
             VMS  + E IA+ARK G       I 
Sbjct: 264 TKVMSKSSAEVIAQARKKGTVVYGEPIT 291

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457

 Score =  359 bits (924), Expect = e-123
 Identities = 101/256 (39%), Positives = 150/256 (58%), Gaps = 5/256 (1%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
            I+IK GT+V A     AD+ ++DG +  +   +   +  + +DA G++V PGGID HTH
Sbjct: 2   DIIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPGGIDVHTH 59

Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
           +      +++ D F +   AA  GGTT  +DF     G SL      ++  A   S +DY
Sbjct: 60  VETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDY 119

Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
           G+H+ +    + V +E+EV+  + GI SFK FMAY+G  MI+D  L++   +    G+L 
Sbjct: 120 GYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLV 178

Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
           MVHAENGDA    + + +  G T P  HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 179 MVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238

Query: 292 MSMDAMEEIAKARKAG 307
              +++EE+ +A+  G
Sbjct: 239 TCEESLEEVMRAKSRG 254

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541

 Score =  359 bits (924), Expect = e-122
 Identities = 144/294 (48%), Positives = 186/294 (63%), Gaps = 9/294 (3%)

Query: 32  NNLFCDAGSEYGGPQCGIQSSSK---ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88
           ++    +G + G      QS +    +LI+GG VVN    ++ADV VEDG+V A+  ++ 
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLL 62

Query: 89  ----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
                   ++VLDA GK V+PGGID HTH+   FMGS +IDDF  G  AAL+GGTTM ID
Sbjct: 63  PPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIID 122

Query: 145 FVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF 202
           F IP  G SL   FE +   A    C DY  H+A+T W + V +EM+++V++KG+NSFK 
Sbjct: 123 FAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKM 182

Query: 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262
           FMAYK  +M+ D  L E F RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L 
Sbjct: 183 FMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELC 242

Query: 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
           RP  +E EAT RAI +A  VN PLY+VHVMS  A + IA AR+ G       I 
Sbjct: 243 RPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIA 296

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521

 Score =  357 bits (919), Expect = e-121
 Identities = 146/268 (54%), Positives = 183/268 (68%), Gaps = 2/268 (0%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
            +  ILIK GTVVN      +DV VE+GI+  +  NI   + +KV+DAT K ++PGGID 
Sbjct: 6   QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDT 65

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
           HTH  + FMG+ ++DDF  G  AA+AGGTT  IDFVIP  G SL   ++ ++K A     
Sbjct: 66  HTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN 125

Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
            DY  H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ +   FKRCK LG
Sbjct: 126 CDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELG 185

Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
           A+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP  LE EAT RAI +A+ V TP+Y+
Sbjct: 186 AIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYI 245

Query: 289 VHVMSMDAMEEIAKARKAGPNFLNTTIP 316
           VHV S+ A + I K RK G       I 
Sbjct: 246 VHVQSIGAADVICKHRKEGVRVYGEPIA 273

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458

 Score =  335 bits (861), Expect = e-113
 Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 10/260 (3%)

Query: 53  SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
             +++K   +V++     AD+ V+DG V A+  + +  +  + +DA GKFVMPG +D H 
Sbjct: 2   FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHV 61

Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMD 170
           H+ ++         F     +A  GG T  I+  I     +    F   +K+A     +D
Sbjct: 62  HI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120

Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSL 227
           +  +      +     E+  M  + G   FK  MA     M   ++D  L E F+   + 
Sbjct: 121 FALYGGGVPGNL---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAAC 176

Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
           G++ +VHAEN   +   QK++   G      +  S+P   E EA  RA+ L +     L 
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236

Query: 288 VVHVMSMDAMEEIAKARKAG 307
           V+HV + D +E I +A+  G
Sbjct: 237 VLHVSNPDGVELIHQAQSEG 256

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559

 Score =  326 bits (837), Expect = e-108
 Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 16/268 (5%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++IK G +  A     A++ V +G V  +  +I+     +V+DA G F+ PGGID H H+
Sbjct: 5   LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64

Query: 115 AMEF-MGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEA------YEKKAKN 166
                +  + +D       +A+AGGTT  + F    ++    +           E   + 
Sbjct: 65  DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124

Query: 167 SCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSFMINDELLIE 219
              DYG H+ + + ++   +  E++         + G++S K FM Y G   I+D  ++ 
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMS 183

Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
                +  G   M+HAENGD V    + + E G+T    H +SRP ++EGEAT RAI LA
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243

Query: 280 EFVNTPLYVVHVMSMDAMEEIAKARKAG 307
             ++TP+  VHV S  A E I +A+  G
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKG 271

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473

 Score =  269 bits (690), Expect = 2e-87
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 18/263 (6%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++IK GTV+  +  ++ D+ V+ G + A+  ++      +V+DA+G  V PG +D HTH+
Sbjct: 25  LIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAK--EVMDASGLVVSPGMVDAHTHI 82

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-DY 171
           +    G    + + +G  AA  GG T  I+  +    +    A  E     AK     D 
Sbjct: 83  SE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 140

Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM-------INDELLIEGFKRC 224
                +  ++    D +  + +  G+  FK F+A  G          +ND    +G ++ 
Sbjct: 141 AQLGGLVSYNI---DRLHELDEV-GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196

Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
             LG   +VH EN     E  +     G      +  SRP   E EA  R + LA+    
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256

Query: 285 PLYVVHVMSMDAMEEIAKARKAG 307
            L+V HV S + +EE+ +AR+ G
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEG 279

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448

 Score =  267 bits (686), Expect = 3e-87
 Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 13/262 (4%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTH 113
           ++I+  TVV       ADV + +GIV A+    ++  DD   +D TG  + PG +D H H
Sbjct: 8   LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67

Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-D 170
                 G    + F SG  +  AGG T + D  +  N         +   + A    + D
Sbjct: 68  FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125

Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSL 227
           Y F   +   +    D ++ +    G+  FK FM+  G+      +DE L++G K+  +L
Sbjct: 126 YRFWGGLVPGNI---DHLQDLHDG-GVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181

Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
           G++  VHAE+ + V       IE      + ++ +RP + E EA  R +R A+    P++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241

Query: 288 VVHVMSMDAMEEIAKARKAGPN 309
           + HV S   ++ I +A+  G N
Sbjct: 242 ICHVSSRKVLKRIKQAKGEGVN 263

>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452

 Score =  155 bits (395), Expect = 5e-44
 Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 19/263 (7%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGID 109
           KIL++   + N        V ++   +  +       DD     +V++ +G  + PG ID
Sbjct: 5   KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64

Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN- 166
              H   E  G        S   AA+AGG T  +D     P             +   + 
Sbjct: 65  DQVHF-REP-GLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWER-LLEKRQIGADT 121

Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCK 225
           +  +YGF    T  D +  DE++ +  +  +   K F+    G+ +++++  +E  K   
Sbjct: 122 AWANYGFFFGGTN-DNI--DEIKRV-DKHLVPGLKLFLGSSTGNMLVDNKETLE--KIFG 175

Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGIT--GPEGHALSRPPLLEGEATTRAIRLAEFVN 283
               L   H E  + +   ++              H L R       ++  A+ LAE +N
Sbjct: 176 ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMN 235

Query: 284 TPLYVVHVMSMDAMEEIAKARKA 306
             L+++H+ +   +         
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPT 258

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424

 Score =  106 bits (266), Expect = 5e-26
 Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 69/284 (24%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
            LIK G V+     Q AD+ ++  ++  + P I   + V ++DA G FV PG +D H HL
Sbjct: 2   KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61

Query: 115 AMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN-- 150
             E  G E  +   +G  AA  GG TT+                + +         +   
Sbjct: 62  R-E-PGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVL 119

Query: 151 --GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208
              S+T                 G  +           +   +  ++G  +F       G
Sbjct: 120 PYASITTRQL-------------GKELV----------DFPAL-VKEGAFAF----TDDG 151

Query: 209 SFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR 263
             +    ++ EG      +    + H E      G A+ EG KR  ELGI G        
Sbjct: 152 VGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEG-KRSKELGIPG-------I 203

Query: 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
           P + E     R + LAE      +V HV + +++  I  A++AG
Sbjct: 204 PNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAG 247

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428

 Score =  100 bits (251), Expect = 7e-24
 Identities = 69/286 (24%), Positives = 106/286 (37%), Gaps = 71/286 (24%)

Query: 54  KILIKGGTVVN-AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
             L K G  +N        D+ V+DG +  V  NI   D+ +V+D  GK + PG +D H 
Sbjct: 2   NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHV 60

Query: 113 HLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN 150
           HL  E  G E  +   +G  AA  GG TT+               ++ +         +N
Sbjct: 61  HLR-E-PGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVN 118

Query: 151 ----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
               G++T                 G  M           + E + KE G  +F      
Sbjct: 119 VLPYGAITVRQA-------------GSEMT----------DFETL-KELGAFAF----TD 150

Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
            G  + +  +++   KR   L    + H E     N   V EG K   + G+ G      
Sbjct: 151 DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEG-KFSEKHGLNG------ 203

Query: 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
             P + E     R I LAE  +   +V HV +  ++  I  A++AG
Sbjct: 204 -IPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAG 248

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569

 Score =  100 bits (250), Expect = 1e-23
 Identities = 43/283 (15%), Positives = 80/283 (28%), Gaps = 29/283 (10%)

Query: 43  GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVG 90
                  +    ++I    +V+      AD+ ++DG +              V+ N++VG
Sbjct: 56  SQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVG 115

Query: 91  DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150
              + L   G  V  GGID H H        +    F SG    + GGT           
Sbjct: 116 PATEALAGEGLIVTAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGTGPADGTNATTI 172

Query: 151 GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210
                  +   + A+   M+ GF       ++    +      E G   FK    +  + 
Sbjct: 173 TPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI----EAGAIGFKIHEDWGTTP 228

Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL-GITGPEGHALS-----RP 264
              +  L               +H +  +     +  M  + G T    H         P
Sbjct: 229 SAINHAL----DVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAP 284

Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
            +++       +  +     P  V        M  +   +   
Sbjct: 285 DIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKS 327

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467

 Score = 98.8 bits (247), Expect = 3e-23
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 73/288 (25%)

Query: 53  SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
            K+++K G V++         D+ VE+G +  +  NI    + +++DA G  V PG ID 
Sbjct: 47  LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDI 105

Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------- 147
           H HL  +  G    +D  SG   A+AGG TT+               +++++        
Sbjct: 106 HVHLR-D-PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL 163

Query: 148 ----PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFF 203
               P  G++T G +             G  +A          +   + KE G  +F   
Sbjct: 164 CRVLPT-GTITKGRK-------------GKEIA----------DFYSL-KEAGCVAF--- 195

Query: 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGH 259
               GS +++  ++ +  +    LG   M H E        + EG +    LG++     
Sbjct: 196 -TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEG-EVSALLGLSS---- 249

Query: 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
              R P  E     R   LA+     +++ HV +  ++E I   ++ G
Sbjct: 250 ---RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKG 294

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379

 Score = 92.5 bits (229), Expect = 2e-21
 Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 20/266 (7%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LIK G  VN       ++ +++  + AV   I+      +    G +V  G ID H H 
Sbjct: 7   LLIKNGQTVNG---MPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63

Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN--SCMDYG 172
              F       D+       +  G T  ID       ++   ++  ++   N    ++  
Sbjct: 64  ---FEKMALYYDYPD--EIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNIS 118

Query: 173 FHMAITKWDEVVSDEMEVMVKEK-------GINSFKFFMAYKGSFMINDELLIEGFKRCK 225
               + + +     +++  + +K        +   K  M+           L    +  +
Sbjct: 119 KWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQ 178

Query: 226 SLGALA-MVHAENGDAVFEGQKRMIELG-ITGPEGHALSRPPLLEGEATTR-AIRLAEFV 282
               +  MVH  +     +    ++E G +     +      L +     +     A   
Sbjct: 179 ENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNK 238

Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGP 308
                + H            A + G 
Sbjct: 239 GVVFDIGHGTDSFNFHVAETALREGM 264

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570

 Score = 92.4 bits (229), Expect = 7e-21
 Identities = 43/257 (16%), Positives = 71/257 (27%), Gaps = 45/257 (17%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKF 102
           +L+    +++      AD+ V+DG +V             V PN+ VG   +V+ A GK 
Sbjct: 69  LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128

Query: 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGSLTAG----- 156
           V  GGID H H                    ALA G TT+      P  GS         
Sbjct: 129 VTAGGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177

Query: 157 --FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214
              E   K  +   ++ G              E      + G    K    +        
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ----IDAGAAGLKIHEDWG----ATP 229

Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
             +               +H++  +     +  +            +     +EG     
Sbjct: 230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL------RAINGRVIHSFHVEGAGGGH 283

Query: 275 AIRLAEFVNTPLYVVHV 291
           A  +      P  +   
Sbjct: 284 APDIMAMAGHPNVLPSS 300

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 64/292 (21%), Positives = 106/292 (36%), Gaps = 82/292 (28%)

Query: 55  ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           ILI+   +V+A  +   ADV + +G +++++     G+  +V+D TG F+ PG +D H H
Sbjct: 2   ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57

Query: 114 LAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI----------- 147
           L  E  G E  +D FSG  AA+ GG T +               +  +            
Sbjct: 58  LR-E-PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARL 115

Query: 148 -PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
            P   +LT   E             G  +              ++ +E G          
Sbjct: 116 HPA-AALTEKQE-------------GKTLT----------PAGLL-REAGAVLL----TD 146

Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
            G    +  +L  G      LG    VHAE         + +G      LG+ G      
Sbjct: 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDG-PLADLLGLPG------ 199

Query: 262 SRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMSMDAMEEIAKARKAG 307
             PP  E     R + +  +          L+V H+ +   +E + +A++AG
Sbjct: 200 -NPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAG 250

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386

 Score = 80.8 bits (199), Expect = 3e-17
 Identities = 46/281 (16%), Positives = 87/281 (30%), Gaps = 26/281 (9%)

Query: 53  SKILIK-GGTVVNAHHQ----QIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMP 105
           SK +IK  G +V+   +    Q   + VEDG++ A+     +    D  ++DA G  V P
Sbjct: 2   SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61

Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE---- 161
           G +D H H+                 ++AL GG T  I    P            +    
Sbjct: 62  GLLDTHVHV--SGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAI 119

Query: 162 --KKAKNSCMDYGFHM---AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216
              K+  +    G  +   A+     +  ++   M KE G+          G+   N E 
Sbjct: 120 TLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKE-GVWIVGEVG--LGTIK-NPED 175

Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
                +     G    +H   G ++        +  I                 +     
Sbjct: 176 AAPMVEWAHKHGFKVQMHTG-GTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVD 234

Query: 277 RLAEFVNTPLYVVHVMSMDAMEEI---AKARKAGPNFLNTT 314
           R+ +  +  + +V   +    + +   A  +      +   
Sbjct: 235 RIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGN 275

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608

 Score = 80.8 bits (199), Expect = 5e-17
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           +LI GGT+V+    ++  AD+ +   ++ +V    +  D  +V+DA G +V PG ID H 
Sbjct: 37  VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96

Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
           H+      S      ++  A    G TT+  D     N     G     K  +N  +   
Sbjct: 97  HI----ESSMITPAAYA-AAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151

Query: 173 F---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
                             +  +  +  ++    I      M  +G     D  +    + 
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIE-RDPRMSGIVQA 210

Query: 224 CKSLGALAMVH 234
             +   L   H
Sbjct: 211 GLAAEKLVCGH 221

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396

 Score = 80.1 bits (197), Expect = 5e-17
 Identities = 56/278 (20%), Positives = 96/278 (34%), Gaps = 42/278 (15%)

Query: 52  SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
           S KIL K  TV     +    DV V +G V  V  NI    D +++D TGKF+ PG +D 
Sbjct: 4   SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIED-PDAEIVDLTGKFLFPGFVDA 62

Query: 111 HTHLAM--EFMGSETIDDFFSGQAA-------------------ALAGGTTMHIDFVIPI 149
           H+H+ +  E +G    D   +                       ALAGG T     ++P 
Sbjct: 63  HSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSV--MIVPG 120

Query: 150 NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209
           + +   G  +                     +E +  +   +    G N  + +   K +
Sbjct: 121 SANPVGGQGSV------------IKFRSIIVEECIVKDPAGLKMAFGENPKRVYGERKQT 168

Query: 210 F---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
               M    ++ + F + K+      +  + G    E   +M             +R   
Sbjct: 169 PSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVG-EMVLRKKIPARMHA 227

Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKA 303
              +    AIR+AE     L + H   +    + +A+ 
Sbjct: 228 HRADDILTAIRIAEEFGFNLVIEHGTEAYKISKVLAEK 265

>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390

 Score = 76.7 bits (189), Expect = 7e-16
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 16/219 (7%)

Query: 50  QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGG 107
            ++   L++G  +     + I DV V +G ++AV  NI   +  +  V+D +G+ + PG 
Sbjct: 5   TAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGF 64

Query: 108 IDPHTHLAM-EFMGSETIDDFFSGQAAALAGGTTMHI-----DFVIPINGSLTAGFEAYE 161
           ID H HL         T        +     G T  +     D +     SL A   A  
Sbjct: 65  IDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALN 124

Query: 162 KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF 221
           ++  ++ M  G +   ++      ++   ++                S   +   L    
Sbjct: 125 EEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISD--HRSAAPDVYHLANMA 182

Query: 222 KRCKSLGALA------MVHAENGDAVFEGQKRMIELGIT 254
              +  G L       + H  +     +    ++E    
Sbjct: 183 AESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDV 221

>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417

 Score = 76.3 bits (187), Expect = 1e-15
 Identities = 45/277 (16%), Positives = 84/277 (30%), Gaps = 13/277 (4%)

Query: 44  GPQCGIQSSSKILIKGGTVV---NAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDAT 99
           G Q      + IL+     V       Q   D+ +  DG + AV   +    D + +DA 
Sbjct: 6   GEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAK 65

Query: 100 GKFVMPGGIDPHTHL--AMEFMGSETIDDFF-SGQAAALAGGTTMHID---FVIPINGSL 153
           G F+ PG +D H H+      +     +     G    +  G+    +   F   I    
Sbjct: 66  GAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPS 125

Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFM 211
               +A+        +       +    ++  D +     E  + I   K   ++  +  
Sbjct: 126 RERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGS 185

Query: 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP-PLLEGE 270
                +  G K  K L    MVH     A+++    ++  G              ++E E
Sbjct: 186 WGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDE 245

Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
                          L + H  +  + +    A   G
Sbjct: 246 DLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARG 282

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 51  SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
           S +  L + G +++  H  +    ++ +EDG +  V        +  V+D  GK +MPG 
Sbjct: 2   SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61

Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALA 136
           ID H H+         +    +      A
Sbjct: 62  IDLHVHVVAIEFNLPRVATLPNVLVTLRA 90

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 52  SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
            SK LI  G +++    Q+     + ++  I+  ++   I+  D    +D     V+PG 
Sbjct: 6   DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPGL 65

Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF 157
           +D H H   E+            +  A+      ++        +  +GF
Sbjct: 66  MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYV--------TFKSGF 107

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 51  SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
           S +  +++GG V++     +     V ++   +V V        + + +D  GK VMPG 
Sbjct: 2   SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61

Query: 108 IDPHTHLAME 117
           ID H H+   
Sbjct: 62  IDCHVHVLAS 71

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           ++I+   +  +    + D+ +    ++ ++  I  G     +DA G  V PG +D HTH+
Sbjct: 7   LIIRNAYL--SEKDSVYDIGIVGDRIIKIEAKIE-GTVKDEIDAKGNLVSPGFVDAHTHM 63

Query: 115 AMEFMGSETIDDFFSGQAAALAGG 138
              F  +      F  +       
Sbjct: 64  DKSFTSTGERLPKFWSRPYTRDAA 87

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 55  ILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
           ILI+G T V   +   +++  AD+ ++   +VAV  +++     + +D  G   +PG I+
Sbjct: 2   ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61

Query: 110 PHTHLAMEFM-GSETIDD 126
            H HL    M     ++ 
Sbjct: 62  SHQHLYEGAMRAIPQLER 79

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 39/272 (14%), Positives = 74/272 (27%), Gaps = 44/272 (16%)

Query: 49  IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107
           + +++   I    +     + +  ++++DG + A+     V       LDA    V+P  
Sbjct: 4   MANNALQTIINARL--PGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPF 61

Query: 108 IDPHTHLAMEFMGSE-----------------------TIDDFFSGQAAAL----AGGTT 140
           ++PH HL       +                       T DD        L    A G  
Sbjct: 62  VEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQ 121

Query: 141 M---HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
               H+D       +L A  E  ++ A    +                + +       G 
Sbjct: 122 HVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGA 181

Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIEL----- 251
           +       ++ +     E L + F   +    L  VH  E  D      + +  L     
Sbjct: 182 DVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEG 241

Query: 252 ---GITGPEGHALSRPPLLEGEATTRAIRLAE 280
               +T     A+          +     L  
Sbjct: 242 MGARVTASHTTAMHSYN--GAYTSRLFRLLKM 271

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 51  SSSKILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
           +S   LIK    ++    +I  AD+ + +G +  +        D  V+      ++PG +
Sbjct: 4   TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLM 61

Query: 109 DPHTHLAME 117
           D H H+   
Sbjct: 62  DSHVHIVGN 70

>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 39/256 (15%), Positives = 69/256 (26%), Gaps = 27/256 (10%)

Query: 46  QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKV 95
           Q        +++    +V+      AD+ V+DG + A+    N          +G   +V
Sbjct: 59  QMLAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEV 118

Query: 96  LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTA 155
           + A GK V  GGID H H        E      SG    + GGT                
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEE---ALVSGVTTMVGGGTGPAAGTHATTCTPGPW 175

Query: 156 GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDE 215
                 + A +  ++ G              E        G+   K    +  +    D 
Sbjct: 176 YISRMLQAADSLPVNIGLLGKGNVSQPDALREQV----AAGVIGLKIHEDWGATPAAID- 230

Query: 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275
                      +     +H++  +     +  +  +      G         EG     A
Sbjct: 231 ---CALTVADEMDIQVALHSDTLNESGFVEDTLAAI------GGRTIHTFHTEGAGGGHA 281

Query: 276 IRLAEFVNTPLYVVHV 291
             +      P  +   
Sbjct: 282 PDIITACAHPNILPSS 297

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
           ++I    ++     +     V +E+G +  V      G+    LD +GK VMP   + HT
Sbjct: 1   MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQ----GEVKVDLDLSGKLVMPALFNTHT 56

Query: 113 HLAMEFM 119
           H  M  +
Sbjct: 57  HAPMTLL 63

>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 51  SSSKILIKGGTVVNAHHQQI---------ADVYVEDGIVVAVQPNINVGDDVKVLDATGK 101
           +    LI+    +    +            D+ +    + A+        +  ++DAT  
Sbjct: 8   TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGE-TIVDATDC 66

Query: 102 FVMPGGIDPHTHLAMEFM-GSETIDD 126
            + P  ++ H HL    + G     D
Sbjct: 67  VIYPAWVNTHHHLFQSLLKGEPAGLD 92

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 50  QSSSKILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVG--DDVKVLDATGKFV 103
           QS  + +I    ++      + + +  + + DG + A+ P  +    +  + L+     +
Sbjct: 3   QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVL 62

Query: 104 MPGGIDPHTHLAMEFM 119
           MPG I+ H H AM  +
Sbjct: 63  MPGLINLHGHSAMSLL 78

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 55  ILIKGGTVV--NAHHQQI--ADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGI 108
           +L+    +V        +    + + DG +  V P          ++ +  G  + PG +
Sbjct: 10  LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69

Query: 109 DPHTHLAM 116
           + H H AM
Sbjct: 70  NAHGHSAM 77

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 55  ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGG 107
           +LI+ G VV    H   + D  V V +G++VAV P  +        + +      +MPG 
Sbjct: 16  LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75

Query: 108 IDPHTHLAMEFM 119
           ++ HTH  M  +
Sbjct: 76  VNAHTHNPMTLL 87

>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 55  ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
             I GG +++     ++ AD+ V DG + A+             DA+GK V PG ID H 
Sbjct: 9   FKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPAR-HAWDASGKIVAPGFIDVHG 67

Query: 113 H 113
           H
Sbjct: 68  H 68

>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 55  ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
            ++ GGTV++      ++ADV V    + AV          ++ D  GK V PG ID HT
Sbjct: 23  YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRI-DVAGKVVSPGFIDSHT 81

Query: 113 H 113
           H
Sbjct: 82  H 82

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 31  SNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV--------NAHHQQIAD--VYVEDGIV 80
           SN +  D+ S     Q   ++ + + I    ++        N     + D  + ++DGI+
Sbjct: 1   SNAMSKDSESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGII 60

Query: 81  VAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAM 116
           +A++P  +      + LD   + +MPG ++ H H AM
Sbjct: 61  LAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAM 97

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 52  SSKILIKGGTVVNAH-----HQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVM 104
                +   T+V         + +  V   DG +  V P+   ++  +   LD TGK VM
Sbjct: 11  VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVM 70

Query: 105 PGGIDPHTHLAME 117
           PG I+ HTHL  +
Sbjct: 71  PGLINAHTHLFSQ 83

>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 51  SSSKILIKGGTVV--NAHHQQI-----ADVYVEDGIVVAVQPNINV----GDDVKVLDAT 99
            ++  L +   +   N     I     A + V +G +    P  ++        +  D  
Sbjct: 13  GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCG 72

Query: 100 GKFVMPGGIDPHTHLAM 116
           G+++ P  ID HTHL  
Sbjct: 73  GRWITPALIDCHTHLVF 89

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 51  SSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
           S++   +    +   +   +   V +    + AV P  ++  ++ V+D  G  + PG ID
Sbjct: 1   SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60

Query: 110 PHTHLAM--EFMGSETIDDFFSGQAAALAGGTT 140
              +      F    T +   +   A L  G T
Sbjct: 61  LQLNGCGGVMFNDEITAETIDTMHKANLKSGCT 93

>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 71  ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAM 116
           A V + +  +V           +  +++D +G+ V PG +DPHTHL  
Sbjct: 38  AVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVF 85

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 52  SSKILIKGGTVV-----NAHHQQI--ADVYVEDGIVVAVQP--NINVGDDVKVLDATGKF 102
           + + +    T        A +  +    + V +G + A+ P  ++         D  GK 
Sbjct: 4   NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL 63

Query: 103 VMPGGIDPHTHLAM 116
           V PG ID HTHL  
Sbjct: 64  VTPGLIDCHTHLIF 77

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 57  IKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH-- 113
           +  G +   H       V + DG++ +V P   +  +++     G  + PG ID   +  
Sbjct: 4   LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63

Query: 114 ---LAMEFMGSETIDDFFSGQAAALAGGTT 140
                 +   + +++     Q A    G T
Sbjct: 64  GGVQFNDTAEAVSVETLEIMQKANEKSGCT 93

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 49  IQSSSKILIKGGTVVNAHHQQI-----ADVYVEDGIVVAVQPNINVG-DDVKVLDATGKF 102
            +  +  + KG  +      +      + + V DG + +V  N+        ++D     
Sbjct: 5   EKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNI 64

Query: 103 VMPGGIDPHTHLAM 116
           ++PG  D H H + 
Sbjct: 65  IIPGMNDLHAHASQ 78

>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 13  LTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTV--VNAHHQQI 70
           L S+ +     +    +    +    G                 +  GT+    +  +++
Sbjct: 3   LASLPISNFFTFNHQSTLFTKVKNFMG-------VKHIGDCMKALINGTIYTSFSPVKKV 55

Query: 71  ADVYVEDGIVVAV-----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
           + + + +  V+          I      +++D  GKFVMP   D H HL  
Sbjct: 56  SGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 56  LIKGGTVVNAHHQQIAD--VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPH 111
           L+    +        +   V V    V A      +         +  G  + P  ++ H
Sbjct: 40  LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAPPPVNAH 99

Query: 112 THLAM 116
           THL M
Sbjct: 100 THLDM 104

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 52  SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGID 109
           +  +LIK   +V  +   +   V + DG +  V           ++       ++PG ID
Sbjct: 2   AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMID 61

Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
            H H        +         ++ L   GTT
Sbjct: 62  IHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93

>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 55  ILIKGGTV--VNAHHQQIADVYVEDGIVVAV---QPNINVGDDVKVLDATGKFVMPGGID 109
           +++  G +  ++    +++ + + DG++ AV   +   +  +  K +D   K  +PG  D
Sbjct: 6   MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65

Query: 110 PHTHL 114
            H H+
Sbjct: 66  SHIHV 70

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 55  ILIKGGTVVNAHHQQIADVYV-EDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDP 110
            +IK   ++      I D  V  D  + A+    N+     +  V       ++PG  +P
Sbjct: 2   RIIKPFAILTPQ-TIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANP 60

Query: 111 HTHLAM 116
           H HL  
Sbjct: 61  HLHLEF 66

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 71  ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPHTHLAM 116
             + V DG++ A  P   +      V++     + ++PG ID H HL  
Sbjct: 36  GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQ 84

>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 71  ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
             + +  G++ +++  +  G D    D     V+ G  + H+H     M
Sbjct: 29  VRIGIAGGVICSIETGVLAGPD----DERQSVVVAGMANLHSHAFQYGM 73

>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)

Query: 50  QSSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
                ++++   +V+    +   DV +E+G +V V+                  +MPG +
Sbjct: 8   HHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRE---------CIPRGVLMPGFV 58

Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
           DPH H     +G++T++  FS     L   G T
Sbjct: 59  DPHIHGV---VGADTMNCDFSEMEEFLYSQGVT 88

>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Length = 453

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 56  LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
           L+  G   N            DG++  ++P      +    +  G  V+PG  + H+H  
Sbjct: 10  LLPEGWARNV-----RFEISADGVLAEIRP----DANADGAERLGGAVLPGMPNLHSHAF 60

Query: 116 MEFM 119
              M
Sbjct: 61  QRAM 64

>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 2.05A {Canavalia ensiformis} Length = 840

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 24/95 (25%)

Query: 71  ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
           AD+ ++DG++ +            V  N+ +G + +V+   G  V  G ID H H     
Sbjct: 355 ADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQ 414

Query: 119 MGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGS 152
           +  E           A++ G TT+      P  G+
Sbjct: 415 LVYE-----------AISSGITTLVGGGTGPAAGT 438

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
3dc8_A	490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	100.0
3sfw_A	461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	100.0
2fty_A	559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	100.0
3e74_A	473	Allantoinase; (beta/alpha)8-barrel domain, small b	100.0
2ftw_A	521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	100.0
1gkp_A	458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	100.0
3hm7_A	448	Allantoinase; metallo-dependent hydrolase, protein	100.0
2vr2_A	541	Dihydropyrimidinase; hydantoinase, metal-binding,	100.0
2vm8_A	501	Dihydropyrimidinase-related protein 2; neurogenesi	100.0
1gkr_A	458	Hydantoinase, non-ATP dependent L-selective hydant	100.0
3gri_A	424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	100.0
1nfg_A	457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	100.0
3mpg_A	428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	99.97
2z00_A	426	Dihydroorotase; zinc binding protein, hydrolase, m	99.96
1xrt_A	467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	99.96
3gip_A	480	N-acyl-D-glutamate deacylase; amidohydrolase famil	99.95
2gwn_A	452	Dihydroorotase; zinc-binding prote structural geno	99.95
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	99.92
3h4u_A	479	Amidohydrolase; signature of Zn ligands, structura	99.92
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	99.92
4f0r_A	447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	99.92
3lnp_A	468	Amidohydrolase family protein OLEI01672_1_465; TIM	99.92
4dyk_A	451	Amidohydrolase; adenosine deaminase, nysgrc, struc	99.92
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	99.91
4dzh_A	472	Amidohydrolase; adenosine deaminase, nysgrc, struc	99.91
3ls9_A	456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	99.91
2paj_A	492	Putative cytosine/guanine deaminase; NYSGXRC, PSI-	99.9
1ra0_A	430	Cytosine deaminase; alpha-beta barrel, hexamer, co	99.9
2qt3_A	403	N-isopropylammelide isopropyl amidohydrolase; N-is	99.9
4aql_A	476	Guanine deaminase; hydrolase, purine metabolism; H	99.9
1rk6_A	496	D-aminoacylase; TIM barrel, beta barrel, insertion	99.89
2i9u_A	439	Cytosine/guanine deaminase related protein; protei	99.89
1e9y_B	569	Urease subunit beta; hydrolase, dodecamer; HET: KC	99.89
2ood_A	475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	99.89
3be7_A	408	Zn-dependent arginine carboxypeptidase; unknown so	99.89
2qs8_A	418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	99.88
2ics_A	379	Adenine deaminase; TIM barrel, binuclear zinc, ade	99.88
3v7p_A	427	Amidohydrolase family protein; iron binding site,	99.87
2imr_A	420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	99.87
3pnu_A	359	Dihydroorotase; TIM barrel, zinc binding, hydrolas	99.87
2p9b_A	458	Possible prolidase; protein structure initiative I	99.87
2vun_A	386	Enamidase; nicotinate degradation, binuclear metal	99.87
2ogj_A	417	Dihydroorotase; TIM barrel, binuclear zinc, imidaz	99.86
4ubp_C	570	Protein (urease (chain C)); bacillus pasteurii, ni	99.86
4ac7_C	570	Urease subunit alpha; hydrolase, bacillus pasteuri	99.86
4f0l_A	458	Amidohydrolase; ssgcid, structural genomics, seatt	99.84
3nqb_A	608	Adenine deaminase 2; PSI-II, structural genomics,	99.84
2z26_A	347	Dihydroorotase, dhoase; TIM barrel, hydrolase; HET	99.83
3mdu_A	453	N-formimino-L-glutamate iminohydrolase; amonohydra	99.82
2vhl_A	396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	99.82
4gy7_A	840	Urease; JACK bean, hydrolase, ME binding, nickel;	99.81
2q09_A	416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	99.81
2puz_A	419	Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino	99.8
1p1m_A	406	Hypothetical protein TM0936; putative metal depend	99.8
3hpa_A	479	Amidohydrolase; signature of Zn ligands, structura	99.8
1yrr_A	382	N-acetylglucosamine-6-phosphate deacetylase; (beta	99.78
1onw_A	390	Isoaspartyl dipeptidase; amidohydrolase, hydrolase	99.78
2bb0_A	421	Imidazolonepropionase; TIM barrel, hydrolase; 2.00	99.77
3ooq_A	396	Amidohydrolase; structural genomics, protein struc	99.77
3icj_A	534	Uncharacterized metal-dependent hydrolase; structu	99.77
3iv8_A	381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	99.7
4ep8_C	566	Urease subunit alpha; alpha-beta barrel, nickel me	99.65
3mtw_A	403	L-arginine carboxypeptidase CC2672; hydrolase; HET	99.63
3ggm_A	81	Uncharacterized protein BT9727_2919; bacillus cere	99.63
3mkv_A	426	Putative amidohydrolase; sargasso SEA, structural	99.56
1o12_A	376	N-acetylglucosamine-6-phosphate deacetylase; struc	99.48
1bf6_A	291	Phosphotriesterase homology protein; hypothetical	98.8
2ob3_A	330	Parathion hydrolase; metalloenzyme, TIM barrel, ne	98.68
2vc7_A	314	Aryldialkylphosphatase; phosphotriesterase, promis	98.66
1zzm_A	259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	98.63
3rcm_A	287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	98.46
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	98.42
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	98.4
3ipw_A	325	Hydrolase TATD family protein; niaid, ssgcid, seat	98.26
4i6k_A	294	Amidohydrolase family protein; enzyme function ini	98.24
3gg7_A	254	Uncharacterized metalloprotein; structural genomic	98.12
3guw_A	261	Uncharacterized protein AF_1765; alpha-beta protei	98.07
1yix_A	265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	97.99
1j6o_A	268	TATD-related deoxyribonuclease; structural genomic	97.98
2xio_A	301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	97.93
3tn4_A	360	Phosphotriesterase; lactonase, hydrolase; HET: KCX	97.89
3pnz_A	330	Phosphotriesterase family protein; amidohydrolase	97.86
3cjp_A	272	Predicted amidohydrolase, dihydroorotase family; s	97.85
3ovg_A	363	Amidohydrolase; structural genomics, PSI-2, protei	97.85
2ffi_A	288	2-pyrone-4,6-dicarboxylic acid hydrolase, putativ;	97.75
2gzx_A	265	Putative TATD related DNAse; deoxyribonuclease, NE	97.74
3k2g_A	364	Resiniferatoxin-binding, phosphotriesterase- relat	97.74
3gtx_A	339	Organophosphorus hydrolase; mutant, amidohydrolase	97.73
4d9a_A	303	2-pyrone-4,6-dicarbaxylate hydrolase; structural g	97.7
3rhg_A	365	Putative phophotriesterase; hydrolase, amidohydrol	97.6
2dvt_A	327	Thermophilic reversible gamma-resorcylate decarbo;	97.58
3rys_A	343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	97.53
3pao_A	326	Adenosine deaminase; structural genomics, PSI-2, p	97.47
2pgf_A	371	Adenosine deaminase; metallo-dependent hydrolase,	97.47
4do7_A	303	Amidohydrolase 2; enzyme function initiative, EFI,	97.21
2f6k_A	307	Metal-dependent hydrolase; metal dependent hydroly	97.2
3e2v_A	401	3'-5'-exonuclease; structural genomics, hydrolase,	97.1
3iar_A	367	Adenosine deaminase; purine metabolism structural	97.02
4gxw_A	380	Adenosine deaminase; amidohydrolase, COG1816, EFI,	97.02
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	96.12
3irs_A	291	Uncharacterized protein BB4693; structural genomic	96.01
2wje_A	247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	95.91
2wm1_A	336	2-amino-3-carboxymuconate-6-semialdehyde decarboxy	95.64
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	95.46
2yxo_A	267	Histidinol phosphatase; metal-dependent, hydrolase	95.23
3ij6_A	312	Uncharacterized metal-dependent hydrolase; structu	94.87
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	94.43
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	94.36
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	94.04
3nur_A	357	Amidohydrolase; TIM barrel; 1.75A {Staphylococcus	94.02
1m65_A	245	Hypothetical protein YCDX; structural genomics, be	92.59
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	90.24
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	89.96
2q02_A	272	Putative cytoplasmic protein; structural genomics,	89.56
2w9m_A	578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	89.26
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	88.77
3lgd_A	508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	87.9
2gwg_A	350	4-oxalomesaconate hydratase; TIM-barrel like prote	87.5
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	87.1
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	86.3
3dcp_A	283	Histidinol-phosphatase; HISK, histidine biosynthes	85.96
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	85.89
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	85.86
2hk0_A	309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	85.64
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	85.46
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	84.86
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	83.55
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	83.13
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	82.53
3iar_A	367	Adenosine deaminase; purine metabolism structural	82.51
3kws_A	287	Putative sugar isomerase; structural genomics, joi	82.25
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	81.74
3b0x_A	575	DNA polymerase beta family (X family); structural	81.65
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	81.47
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	81.27
3qxb_A	316	Putative xylose isomerase; structural genomics, jo	80.82
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	80.62
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	80.47
1xla_A	394	D-xylose isomerase; isomerase(intramolecular oxido	80.43

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.9e-38  Score=298.34  Aligned_cols=267  Identities=49%  Similarity=0.810  Sum_probs=233.2

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|++|++++...+++|+|+||+|++|++...   +.++||++|++|+|||||+|+|+..+..+..++++++.+.+.
T Consensus         2 ~~~i~~~~v~~~~~~~~~~v~I~~G~I~~i~~~~~---~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~a   78 (490)
T 3dc8_A            2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS---GAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRA   78 (490)
T ss_dssp             CEEEESCEEECSSCEEECEEEEETTEEEEEESSCC---CSEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred             cEEEEccEEECCCCceeeeEEEECCEEEEeccCCC---CCeEEECCCCEEecCEEeeccccCCCCCCCCCHHHHHHHHHH
Confidence            58999999999887788999999999999998643   468999999999999999999998875444688999999999


Q ss_pred             HHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC
Q 020079          134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI  212 (331)
Q Consensus       134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~  212 (331)
                      ++++||||++|+....+. ...+.++.+.+...+..+++.++.......++.++++.++.++.|+..+|.|+++.+...+
T Consensus        79 a~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~~~~d~~~~~~~~~~~~~~l~el~~l~~~~G~~~~k~~~~~~~~~~~  158 (490)
T 3dc8_A           79 ALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMV  158 (490)
T ss_dssp             HHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTTCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESCSTTTTBC
T ss_pred             HHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhcccceeeeEEEEecCcHHHHHHHHHHHHhCCCCEEEEEecCCCCccC
Confidence            999999999998755443 5667777776666566777777776666666667888888756899999999988877788


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM  292 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~  292 (331)
                      +++.+.++++.|+++|+++.+|+|+.+.+......+...|...+..+...+|+..|..++.+.+.+++..|+++|++|++
T Consensus       159 ~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~lhi~HvS  238 (490)
T 3dc8_A          159 DDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS  238 (490)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred             CHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence            99999999999999999999999998888777777888899999899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          293 SMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       293 ~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +.++++.++.+|++|++|++++||||+.+..
T Consensus       239 t~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~  269 (490)
T 3dc8_A          239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDE  269 (490)
T ss_dssp             SHHHHHHHHHHHHTTCCEEECCBHHHHHCCG
T ss_pred             CHHHHHHHHHHHHCCCeEEEEEchHHheeCH
Confidence            9999999999999999999999999987753

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A*

Probab=100.00  E-value=1.3e-36  Score=289.26  Aligned_cols=269  Identities=44%  Similarity=0.684  Sum_probs=229.6

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|++|++++...+++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..++.+...++++....+.
T Consensus         2 ~~~i~n~~v~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~~   80 (461)
T 3sfw_A            2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQ-ATDAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKA   80 (461)
T ss_dssp             EEEEESCEEECSSCEEECEEEEETTEEEEEESCCC-CSSCEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred             cEEEECeEEECCCCcEEEEEEEECCEEEEEeCCCC-CCCCeEEECCCCEEEeeeEEeEeccCcCCCCcccHhHHHHHHHH
Confidence            58999999999887788999999999999998653 34578999999999999999999998765556678889999999


Q ss_pred             HHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079          134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM  211 (331)
Q Consensus       134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~  211 (331)
                      ++++||||++|+....+. ...+.++....... ...+++.++.......++.+++++++.++.|+..+|.++++.+...
T Consensus        81 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ik~~~~~~~~~~  160 (461)
T 3sfw_A           81 AAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLM  160 (461)
T ss_dssp             HHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEEESSSTTTTB
T ss_pred             HHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCcc
Confidence            999999999998654433 55566666555433 4566666665555556777888988883389999999988876677


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      ++++.+.++++.|+++|+++.+|+++...+....+.+...|...+..+...+|...|..++.+.+.+++..+.++|++|+
T Consensus       161 ~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~hi~H~  240 (461)
T 3sfw_A          161 ADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV  240 (461)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred             cCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence            89999999999999999999999999888887777778889888888888999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      ++.+.++.++++|++|++|++++||||+.+..
T Consensus       241 s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~~  272 (461)
T 3sfw_A          241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDI  272 (461)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECHHHHHCCG
T ss_pred             CcHHHHHHHHHHHhcCCcEEEeeccceEEEcH
Confidence            99999999999999999999999999887643

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A*

Probab=100.00  E-value=9.7e-35  Score=281.76  Aligned_cols=269  Identities=32%  Similarity=0.480  Sum_probs=214.5

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSGQ  131 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~~~  131 (331)
                      ++++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.+++. +..++++++.+.
T Consensus         3 m~~li~n~~vv~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~~~~   82 (559)
T 2fty_A            3 YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHAT   82 (559)
T ss_dssp             EEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECEEECCBCCCCTTCTTSCCSCCHHHHH
T ss_pred             ceEEEECcEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEEcCEEeeccCcCccccccCCCHHHHHHHH
Confidence            4689999999998777789999999999999986432234589999999999999999999988631 223678888889


Q ss_pred             HHHHhCCceEEecCcCCC---CC-c-HHHHHHH-HHHHhc-cceeeccccccccCC---Chh---hH-HHHHHHHHHhCC
Q 020079          132 AAALAGGTTMHIDFVIPI---NG-S-LTAGFEA-YEKKAK-NSCMDYGFHMAITKW---DEV---VS-DEMEVMVKEKGI  197 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~---~~-~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~---~~~---~~-~~~~~~~~~~g~  197 (331)
                      +.++++||||++|+....   +. . ..+.+.. ..+... +..+++.++......   .++   .+ +++.++.++.|+
T Consensus        83 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~G~  162 (559)
T 2fty_A           83 RSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGV  162 (559)
T ss_dssp             HHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcceeEEEeeeeeccCcCCCchhhhhHHHHHHHHHHHCCC
Confidence            999999999999987543   22 3 3344400 022222 244455444333322   233   45 677777755699


Q ss_pred             CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079          198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR  277 (331)
Q Consensus       198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~  277 (331)
                      ..+|+++++++ ..+++++++++++.|+++|+++++|+++...+......+.+.|...++.+...+|...|..++.+.+.
T Consensus       163 ~~iki~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i~  241 (559)
T 2fty_A          163 SSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAIT  241 (559)
T ss_dssp             CEEEEESSSTT-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEecCCC-CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHHH
Confidence            99999998876 67899999999999999999999999888777766666778898888888888999999999999999


Q ss_pred             HHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       278 l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++...+.++|++|+++.++++.++++|++|++|++++||||+.+.
T Consensus       242 la~~~g~~vhi~H~s~~~~~~~i~~ak~~G~~Vt~e~~p~~l~l~  286 (559)
T 2fty_A          242 LATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLS  286 (559)
T ss_dssp             HHHHTTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCC
T ss_pred             HHHHhCCCEEEEcCCCHHHHHHHHHHHHcCCceEEeecCcccccC
Confidence            999999999999999998899999999999999999999987654

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli}

Probab=100.00  E-value=2e-34  Score=274.69  Aligned_cols=264  Identities=27%  Similarity=0.353  Sum_probs=207.5

Q ss_pred             CCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079           51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG  130 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~  130 (331)
                      |+.+++|+|++|++++...+++|+|+||+|++|++....  ..++||++|++|+|||||+|+|+..+  +....+++...
T Consensus        21 m~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~--~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~~   96 (473)
T 3e74_A           21 MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGD--AKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYETG   96 (473)
T ss_dssp             -CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCC--EEEEEECTTCEEEECEEEEEECC-----------CHHHH
T ss_pred             CcCCEEEEeeEEECCCCceeeeEEEECCEEEEEcCCCCC--CCcEEECCCCEEecCEEEEecccCCC--CCCcHHHHHHH
Confidence            556899999999998887789999999999999986532  26899999999999999999999887  66778889999


Q ss_pred             HHHHHhCCceEEecCc-CCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec-
Q 020079          131 QAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-  206 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~-  206 (331)
                      .+.++++||||++|+. ...+. ...+.++...+.. ....+++.++......   .++++.++. +.|+..+|+++.+ 
T Consensus        97 ~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~---~~~~l~~l~-~~G~~~~K~~~~~~  172 (473)
T 3e74_A           97 TRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NIDRLHELD-EVGVVGFKCFVATC  172 (473)
T ss_dssp             HHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTT---CTTTHHHHH-HHTCSCEEEEC---
T ss_pred             HHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccc---hHHHHHHHH-HcCCCEEEEecccc
Confidence            9999999999999997 44333 3344454444433 3356676665554432   245566666 6799999998874 


Q ss_pred             ------CCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHH
Q 020079          207 ------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE  280 (331)
Q Consensus       207 ------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~  280 (331)
                            +..+.++++.+.++++.|+++|+++.+|+++..............|......+...+|...|..++.+.+.+++
T Consensus       173 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la~  252 (473)
T 3e74_A          173 GDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAK  252 (473)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccCCCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHHH
Confidence                  24456789999999999999999999999987666555555667788888888889999999999999999999


Q ss_pred             hcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          281 FVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       281 ~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ..|.++|++|+++..+++.++++|++|++|++++||||+.+.
T Consensus       253 ~~g~~lhi~Hvst~~~l~li~~ak~~G~~vt~e~~ph~l~l~  294 (473)
T 3e74_A          253 VAGCRLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLD  294 (473)
T ss_dssp             HHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECTHHHHCC
T ss_pred             HhCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEEchHhhhcC
Confidence            999999999999999999999999999999999999998765

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6

Probab=100.00  E-value=5e-34  Score=275.22  Aligned_cols=271  Identities=54%  Similarity=0.844  Sum_probs=220.5

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      .+++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..++.+..++++++.+.+
T Consensus         8 ~~~lI~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~   87 (521)
T 2ftw_A            8 GTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQ   87 (521)
T ss_dssp             CCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHHH
T ss_pred             CCEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEeeecccCcCCCCccCHHHHHHHHH
Confidence            56999999999987777899999999999999864333356899999999999999999999876544456788888899


Q ss_pred             HHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCC
Q 020079          133 AALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF  210 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~  210 (331)
                      .++++||||++|+..+.. ....+.++.+..... ....++.++........+..+++.++.++.|+..+++++.+++..
T Consensus        88 ~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~l~~l~~~~G~~~~k~~~~~~~~~  167 (521)
T 2ftw_A           88 AAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSF  167 (521)
T ss_dssp             HHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEEESSCTTTT
T ss_pred             HHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCCChhHHHHHHHHHHhCCCCEEEEEeccCCCc
Confidence            999999999999764332 245555555444332 234455555544444455567777777557999999998877777


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      .+++++++++++.|+++|+++++|+++........+.+.+.|+..+.+|...+|...|..++.+.+.++...++++|+.|
T Consensus       168 ~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~hi~h  247 (521)
T 2ftw_A          168 MVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVH  247 (521)
T ss_dssp             BCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEECS
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            88999999999999999999999998876666667788999999998888788888888888888889989999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          291 VMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       291 ~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +++...++.++++++.|++|++++||+++...+
T Consensus       248 ~ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~d~  280 (521)
T 2ftw_A          248 VQSIGAADVICKHRKEGVRVYGEPIAAGLGVDG  280 (521)
T ss_dssp             CCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCG
T ss_pred             cCcHHHHHHHHHHHHcCCeEEEEEcchhhccCH
Confidence            999888899999999999999999999886543

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A*

Probab=100.00  E-value=1e-33  Score=268.63  Aligned_cols=266  Identities=34%  Similarity=0.553  Sum_probs=215.2

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA  134 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~  134 (331)
                      ++|+|++|++++...+++|+|+||||++|++....+++.++||++|++|+|||||+|+|+.+++.+..++++++...+.+
T Consensus         2 ~li~n~~vv~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~   81 (458)
T 1gkp_A            2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAA   81 (458)
T ss_dssp             EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECEEEEEECSSCEETTEECSCCHHHHHHHH
T ss_pred             EEEEeeEEECCCCceEeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEecccCCCcCCCCCcCHhHHHHHHHHH
Confidence            78999999998766788999999999999986432335689999999999999999999987643444678888888889


Q ss_pred             HhCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC
Q 020079          135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI  212 (331)
Q Consensus       135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~  212 (331)
                      +++||||++|+....+ ....+.++...+.. .+..+++.++.......++..++++++. +.|+..+|+++++++...+
T Consensus        82 ~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~  160 (458)
T 1gkp_A           82 LMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGV  160 (458)
T ss_dssp             HHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHH-HTTCCEEEEEECSTTTTBC
T ss_pred             HhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCCchhhHHHHHHHH-HhCCCEEEEEeccCCCcCC
Confidence            9999999999865432 24555555544432 2344455444433334445677888887 6789999999888777788


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079          213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM  292 (331)
Q Consensus       213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~  292 (331)
                      +++.+.++++.|+++++++++|+|+..+.....+.+.+.|.....++...+|...|..++.+.+.++...|.+++++|++
T Consensus       161 ~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~~  240 (458)
T 1gkp_A          161 DDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS  240 (458)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCC
T ss_pred             CHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            99999999999999999999999887777666666778898888888878888888888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          293 SMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       293 ~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                      +...++.++.+++.|++|++++||+|+.+
T Consensus       241 ~~~~~~~i~~~~~~G~~v~~~~~p~~~~~  269 (458)
T 1gkp_A          241 CKPALDAAMAAKARGVPIYIESVIPHFLL  269 (458)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEEHHHHHC
T ss_pred             CHHHHHHHHHHHHcCCeEEEEecccceee
Confidence            98888999999999999999999996533

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans}

Probab=100.00  E-value=1.6e-33  Score=266.99  Aligned_cols=265  Identities=29%  Similarity=0.396  Sum_probs=213.6

Q ss_pred             CCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeC--CCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079           51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF  128 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~--~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~  128 (331)
                      ++++++|+|++|++++...+++|+|+||+|++|++  ... +++.++||++|++|+|||||+|+|+..+  +....+++.
T Consensus         4 ~~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~   80 (448)
T 3hm7_A            4 KRFDLIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSIS-SDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEGFA   80 (448)
T ss_dssp             -CCSEEEEEEEEECSSCEEEEEEEEETTEEEEEESTTCSC-TTSSCEEECTTCEEEECEEEEEECCCTT--TSGGGCCSH
T ss_pred             CcccEEEEeeEEECCCCceEeEEEEECCEEEEeeCccCCC-CCCCeEEECCCCEEecCEEEeeeccCCC--CCCcHhHHH
Confidence            34679999999999887788999999999999998  432 3456899999999999999999999877  555567778


Q ss_pred             HHHHHHHhCCceEEecCc-CCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079          129 SGQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA  205 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~  205 (331)
                      ...+.++++|||+++++. ...+. ...+.+....+... ...+++.++.+.....   .+++.++. +.|+.+++.+++
T Consensus        81 ~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~-~~g~~~~~~~l~  156 (448)
T 3hm7_A           81 SGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---IDHLQDLH-DGGVIGFKAFMS  156 (448)
T ss_dssp             HHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---GGGHHHHH-HTTCSEEEEESS
T ss_pred             HHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---HHHHHHHH-HcCCCEEEEeec
Confidence            888999999999999986 43332 33444444433332 2445555555443322   45566666 589999998887


Q ss_pred             cCCC---CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhc
Q 020079          206 YKGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV  282 (331)
Q Consensus       206 ~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~  282 (331)
                      +...   ...+++.+.++++.|+++|+++.+|+++........+.+...|......+...+|...|..++.+.+.+++..
T Consensus       157 ~~~~~~~~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~  236 (448)
T 3hm7_A          157 ECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLT  236 (448)
T ss_dssp             SCSSSSSCCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccCcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHh
Confidence            6432   3458999999999999999999999998877666666677888888888888899999999999999999999


Q ss_pred             CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      |.+++++|+++...++.++++|++|++|++++||||+.+.
T Consensus       237 g~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~  276 (448)
T 3hm7_A          237 CCPIHICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFS  276 (448)
T ss_dssp             TCCEEECCCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCC
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHhcCCCEEEEechHHHccC
Confidence            9999999999999999999999999999999999998764

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=270.19  Aligned_cols=271  Identities=52%  Similarity=0.870  Sum_probs=216.2

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCc----eEEeCCCCeeecccccccccccCCCCCCCChhhH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF  127 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~----~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~  127 (331)
                      +.+++|+|++|++++...+++|+|+||+|++|++....+.+.    ++||++|++|+|||||+|+|+.+++.+..+++++
T Consensus        26 ~~~~lI~ng~Vv~~~~~~~~dV~I~dGrI~~Ig~~~~~~~~~~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~~~~~e~~  105 (541)
T 2vr2_A           26 PSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDF  105 (541)
T ss_dssp             -CEEEEESCEEECSSCEEECEEEEETTEEEEEEC-----------CEEEECTTSEEEECEEEEEECTTCBCSSSBCSCCT
T ss_pred             cCCEEEECcEEEcCCCceEeeEEEECCEEEEeccCCCCCcccccCceEEECCCCEEccCEEEecccCCCCCCCCcCHHHH
Confidence            357999999999987767899999999999999864322222    8999999999999999999998875444567888


Q ss_pred             HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079          128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA  205 (331)
Q Consensus       128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~  205 (331)
                      +.+.+.++++||||++|+..+... ...+.++.+..... ....++.++.......++..+++.++.++.|+..+|.+++
T Consensus       106 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~el~~l~~~~G~~~~k~~~~  185 (541)
T 2vr2_A          106 HQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMA  185 (541)
T ss_dssp             THHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSCSHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             HHHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence            888899999999999998654322 45555555544332 2344555554444444556677777775579999999998


Q ss_pred             cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079          206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP  285 (331)
Q Consensus       206 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~  285 (331)
                      +++.+.+++++++++++.|+++++++++|+|+........+.+.+.|+..+.+|...++...|..++.+.+.++...+++
T Consensus       186 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p  265 (541)
T 2vr2_A          186 YKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCP  265 (541)
T ss_dssp             STTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCC
Confidence            88778889999999999999999999999988776666677889999999888877788888888888888999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          286 LYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       286 ~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      +|+.|+++...++.++++++.|+.|++++||+++...
T Consensus       266 ~~~~h~ss~~~~~~i~~ar~~G~~v~~e~~~~~L~~d  302 (541)
T 2vr2_A          266 LYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTD  302 (541)
T ss_dssp             EEEEEECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCC
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCeEEEEeehhhhcCC
Confidence            9999999888889999999999999999999887543

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A

Probab=100.00  E-value=1.8e-32  Score=263.21  Aligned_cols=269  Identities=45%  Similarity=0.755  Sum_probs=212.4

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      .+++|+|++|++++...+++|+|+||||++|++....+++.++||++|++|+|||||+|+|+..+..+..++++++...+
T Consensus        26 ~~~li~n~~v~~~~~~~~~~V~I~~grI~~Ig~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~  105 (501)
T 2vm8_A           26 DRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQGTK  105 (501)
T ss_dssp             CCEEEEEEEEECSSCEEEEEEEEETTEEEEEESSCCCCSSSCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHHH
T ss_pred             CCEEEEeeEEECCCCceEeeEEEECCEEEEeccCCCCCCCCeEEECCCCEEeeCEEEeeecccccccCCCcHHHHHHHHH
Confidence            57899999999987767899999999999999864333456899999999999999999999876433345788888889


Q ss_pred             HHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhcc-ceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCC
Q 020079          133 AALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF  210 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~  210 (331)
                      .++++||||++|+....+ ....+.++...+...+ ...+++++........+..++++++.++.|+..++.++.++...
T Consensus       106 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~l~~~~G~~~i~~~~~~~~~~  185 (501)
T 2vm8_A          106 AALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRF  185 (501)
T ss_dssp             HHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESSSTTTT
T ss_pred             HHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCCCcccHHHHHHHHHhCCceEEEEeeccCCCC
Confidence            999999999999865433 2444555554443322 23344444332233334556777777557899999988766556


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ..+.++++++++.|+++|+++.+|+++..........+.+.|.....++...+|...+..++.+.+.++...|.++|+.|
T Consensus       186 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~h  265 (501)
T 2vm8_A          186 QLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYITK  265 (501)
T ss_dssp             BCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence            78999999999999999999999998776656666677888998888888888888888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          291 VMSMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       291 ~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                      +++...++.++++++.|+.|++++|||++.+
T Consensus       266 ~~~~~~~~~i~~~~~~G~~v~~~~~~~~l~~  296 (501)
T 2vm8_A          266 VMSKSSAEVIAQARKKGTVVYGEPITASLGT  296 (501)
T ss_dssp             ECCHHHHHHHHHHHHTTCCEEEEEBHHHHHC
T ss_pred             CCcHHHHHHHHHHHhCCCcEEEEEChhHhhc
Confidence            9998888999999999999988898877543

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6

Probab=100.00  E-value=2.7e-31  Score=251.87  Aligned_cols=263  Identities=26%  Similarity=0.305  Sum_probs=201.5

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC-CCChhhHHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ  131 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~~~~~~~~~~~  131 (331)
                      .+++|+|++|++++...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+  + ..++++++...
T Consensus         2 ~~~li~~~~v~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~~~~   79 (458)
T 1gkr_A            2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHIIDM--DLKNRYGRFELDS   79 (458)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEECEEEEEEECCCG--GGTTTSCCHHHHH
T ss_pred             ceEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCEEEeeecccCC--CCCCchhHHHHHH
Confidence            46899999999987667899999999999999864323346899999999999999999999875  3 34567788888


Q ss_pred             HHHHhCCceEEecCc-CCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC-
Q 020079          132 AAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG-  208 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~-  208 (331)
                      +.++++||||++|+. ...+. ...+.++...+......+++.++.+...   +..++++++. +.|+..+|++++++. 
T Consensus        80 ~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~g~~~i~~~~~~~~~  155 (458)
T 1gkr_A           80 ESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVP---GNLPEIRKMH-DAGAVGFKSMMAASVP  155 (458)
T ss_dssp             HHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCT---TCHHHHHHHH-HTTCCEEEEESSCSBT
T ss_pred             HHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCceeEEEEeccCC---CCHHHHHHHH-HcCCcEEEEeecccCC
Confidence            889999999999987 33222 3344444433332211144433332221   2345677777 578999999887653 


Q ss_pred             --CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079          209 --SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL  286 (331)
Q Consensus       209 --~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~  286 (331)
                        ....+.+.++++++.|+++|+++++|+++..........+.+.|......|....+...+...+++.+.++.+.|.++
T Consensus       156 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G~~~~~~h~~~~~~~~~~~~~~~~~~la~~~g~~~  235 (458)
T 1gkr_A          156 GMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRL  235 (458)
T ss_dssp             TTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcCccchhhccccCCHHHHHHHHHHHHHHHHHhCCCE
Confidence              356789999999999999999999999877666555556667787555566666777777788888899999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          287 YVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       287 ~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                      |+.|+++...++.++++|+.|+++++++|||++.+
T Consensus       236 h~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~  270 (458)
T 1gkr_A          236 IVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNI  270 (458)
T ss_dssp             EECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSC
T ss_pred             EEEeCCCHHHHHHHHHHHHCCCcEEEEEchHHhee
Confidence            99999988888889889999999999999998653

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.1e-32  Score=257.52  Aligned_cols=258  Identities=24%  Similarity=0.310  Sum_probs=192.4

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHH
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA  134 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~  134 (331)
                      ++|+|++|++.....+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+  +....+++....+.+
T Consensus         2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~~~~~~   79 (424)
T 3gri_A            2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLREP--GGEYKETIETGTKAA   79 (424)
T ss_dssp             EEEESCEEEETTEEEECEEEEETTEEEEEESCCCCCSSCEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHHH
T ss_pred             EEEEeeEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEEeCeEEeeecCCCC--CCCCHHHHHHHHHHH
Confidence            789999999944457899999999999999875534467899999999999999999999876  667788899999999


Q ss_pred             HhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceeeccccccccC-CChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079          135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM  211 (331)
Q Consensus       135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~  211 (331)
                      +++|||+++++....+. ...+.++...+.... ...++..+..... ...+.+.++.++. +.|...+    .+++.+.
T Consensus        80 ~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~~G~~~~----~~~~~~~  154 (424)
T 3gri_A           80 ARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALV-KEGAFAF----TDDGVGV  154 (424)
T ss_dssp             HHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCSSSBCCHHHHH-TTTCCCE----EECSSCC
T ss_pred             HhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCcchHHHHHHHH-hcCcEEE----ecCCcCc
Confidence            99999999998754333 333444443333322 2223333322221 1122334566666 5676655    3455667


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      .+++.++++++.|+++|+++++|+++........   ...|....+.+...+|...|..++.+.+.+++..|.++|++|+
T Consensus       155 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~---~~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~g~~~~i~H~  231 (424)
T 3gri_A          155 QTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGA---MHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHV  231 (424)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTCC---EESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSC
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhhh---hhcCccchhhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence            8999999999999999999999998876432100   0001111122334578888999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++...++.++++|++|++|++++||||+.++
T Consensus       232 s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~  262 (424)
T 3gri_A          232 STKESVRVIRDAKRAGIHVTAEVTPHHLLLT  262 (424)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEECHHHHHCC
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEecHHHHhcC
Confidence            9999999999999999999999999999765

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6

Probab=100.00  E-value=2.8e-31  Score=251.89  Aligned_cols=266  Identities=38%  Similarity=0.613  Sum_probs=206.7

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      +++|+|++|++++...+++|+|+||+|++|++...  ++.++||++|++|+|||||+|+|+.+......++++++...+.
T Consensus         2 ~~li~n~~v~~~~~~~~~~v~I~~g~I~~ig~~~~--~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~   79 (457)
T 1nfg_A            2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFATATVA   79 (457)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECEEEEEECCSCEETTEECSCCHHHHHHH
T ss_pred             cEEEEeeEEEeCCCceeeeEEEECCEEEEecCCCC--CCCeEEeCCCCEEccceEeeccccccCcCCCCChhhHHHHHHH
Confidence            48999999999877678999999999999997542  3468999999999999999999997432122256788888899


Q ss_pred             HHhCCceEEecCcCCCC-CcHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079          134 ALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM  211 (331)
Q Consensus       134 ~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~  211 (331)
                      ++++||||++|+....+ ....+.++....... ...+++.++......+.+..++++++. +.|+..+|.++++.....
T Consensus        80 ~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~k~~~~~~~~~~  158 (457)
T 1nfg_A           80 AACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNM  158 (457)
T ss_dssp             HHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHTTTGG-GGTCCEEEEESSSTTTTB
T ss_pred             HHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCCchhHHHHHHHHH-HcCCCEEEEeeccCCCCC
Confidence            99999999999865322 245555655544432 244455555444444444445555555 679999999877653345


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      .+.+.+.++++.+++.++++.+|+++........+.+.+.|......|....|...+.+.+++.++++++.|.++|+.|+
T Consensus       159 ~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~H~  238 (457)
T 1nfg_A          159 IDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV  238 (457)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCC
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeC
Confidence            67888999999999999999999998777666666667788766666666678888888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ++...++.++++|+.|++++++++||+..+.
T Consensus       239 ~~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~  269 (457)
T 1nfg_A          239 TCEESLEEVMRAKSRGVRALAETCTHYLYLT  269 (457)
T ss_dssp             CSHHHHHHHHHHHHHTCCEEECEEGGGGTCC
T ss_pred             CcHHHHHHHHHHHHcCCeEEEEEchHHhEeC
Confidence            9888889999999999999999999987654

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}

Probab=99.97  E-value=2.7e-31  Score=250.21  Aligned_cols=258  Identities=24%  Similarity=0.304  Sum_probs=188.2

Q ss_pred             cEEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079           54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA  132 (331)
Q Consensus        54 ~~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~  132 (331)
                      +++|+|++|++... ..+++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+  +....+++....+
T Consensus         2 ~~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~   78 (428)
T 3mpg_A            2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHVHLREP--GGEHKETIETGTL   78 (428)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEESSBEEECCSSCC-CTTSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHH
T ss_pred             cEEEEeeEEEeCCCCeeeeeEEEECCEEEEecCCCC-CCCCeEEECCCCEEeeCEEEEeeccCCC--CCCchhHHHHHHH
Confidence            58999999997443 578999999999999998654 3457899999999999999999999876  6667888989999


Q ss_pred             HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceeeccccccccC-CChhhHHHHHHHHHHhCCCeEEEEEecCCC
Q 020079          133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS  209 (331)
Q Consensus       133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~  209 (331)
                      .++++|||+++++....+. ...+.++...+.... ...++..+..... ...+.+.++.++. +.|...+    .+++.
T Consensus        79 ~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~G~~~~----~~~~~  153 (428)
T 3mpg_A           79 AAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLK-ELGAFAF----TDDGV  153 (428)
T ss_dssp             HHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCSSSBCCHHHHH-HTTCCCE----ECTTS
T ss_pred             HHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCcchHHHHHHHH-HhCCEEE----ECCCc
Confidence            9999999999998654332 233333333332211 2222222221111 1122334456666 5677665    44556


Q ss_pred             CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                      +..+++.++++++.|+++|+++.+|+++........   ...|......+...+|...|..++.+.+.+++..+.+++++
T Consensus       154 ~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~---~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~g~~~~i~  230 (428)
T 3mpg_A          154 GVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGC---VHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVC  230 (428)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTCS---EETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhHH---hhcCccchhhCcCCCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            677899999999999999999999998765432100   00011111223344778888889999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          290 HVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       290 H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      |+++...++.++++|++|++|++++||||+.+.
T Consensus       231 H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~  263 (428)
T 3mpg_A          231 HVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLC  263 (428)
T ss_dssp             SCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCC
T ss_pred             eCCCHHHHHHHHHHHhcCCCEEEEEchHHhEEC
Confidence            999999999999999999999999999998654

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus}

Probab=99.96  E-value=1.2e-28  Score=231.60  Aligned_cols=250  Identities=26%  Similarity=0.338  Sum_probs=176.4

Q ss_pred             EEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079           55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA  133 (331)
Q Consensus        55 ~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~  133 (331)
                      ++|+|++|+++.. ..+++|+|+||+|++|++.    ++.++||++|++|+|||||+|+|+..+  +..+.++++...+.
T Consensus         2 ~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~   75 (426)
T 2z00_A            2 ILIRNVRLVDARGERGPADVLIGEGRILSLEGG----EAKQVVDGTGCFLAPGFLDLHAHLREP--GEEVKEDLFSGLLA   75 (426)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEETTEEEESBCC----CCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHH
T ss_pred             EEEEeeEEECCCCceecceEEEECCEEEEEecC----CCceEEeCCCCEEecCEEEeccccCCC--CCCchHHHHHHHHH
Confidence            6899999999775 4688999999999999975    245799999999999999999999876  44456778888899


Q ss_pred             HHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccce-eecccccccc-CCChhhHHHHHHHHHHhCCCeEEEEEecCCCC
Q 020079          134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSC-MDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF  210 (331)
Q Consensus       134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~  210 (331)
                      ++++||||++|+....+. ...+.++...+...... +++....... ....+.+++++++. +.|...++    ++...
T Consensus        76 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~i~----~~~~~  150 (426)
T 2z00_A           76 AVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTPAGLLR-EAGAVLLT----DDGRT  150 (426)
T ss_dssp             HHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSSSBCCHHHHH-HHTCCEEE----CTTSC
T ss_pred             HHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChhhHHHHHHHH-HcCCEEEE----CCCcC
Confidence            999999999998653321 22233333333222211 2222221111 01112234455555 45766553    34455


Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHH----HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHh-----
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF-----  281 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~-----  281 (331)
                      ..+.+.++++++.|+++|+++.+|+++........    ......|.       ..+|...|...+.+.+.++..     
T Consensus       151 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~g~~~~~~g~-------~~~~~~~e~~~~~~~~~~a~~~~~~~  223 (426)
T 2z00_A          151 NEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDGPLADLLGL-------PGNPPEAEAARIARDLEVLRYALRRS  223 (426)
T ss_dssp             CCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCSEECSHHHHHHTC-------CEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhhccCccchhccc-------ccCChHHHHHHHHHHHHHHhhccccc
Confidence            67899999999999999999999997654322100    01112222       235566676777788888887     


Q ss_pred             -cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          282 -VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       282 -~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                       .+.++++.|+++...++.+++++++|++|++++||+++.+.
T Consensus       224 ~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~  265 (426)
T 2z00_A          224 PATPRLHVQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLT  265 (426)
T ss_dssp             SSCCCEEETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCC
T ss_pred             cCCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhEeC
Confidence             89999999999888889999999999999999999987654

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A*

Probab=99.96  E-value=6e-28  Score=229.84  Aligned_cols=258  Identities=23%  Similarity=0.226  Sum_probs=171.6

Q ss_pred             CccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079           52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS  129 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~  129 (331)
                      |++++|+|++|++++.  ..+++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+  +..+.++++.
T Consensus        46 mm~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~  122 (467)
T 1xrt_A           46 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDIHVHLRDP--GQTYKEDIES  122 (467)
T ss_dssp             CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCC-CSSEEEEECTTSEEEECEEEEEECCCTT--TCTTTCCHHH
T ss_pred             eeeEEEEeeEEECCCCCceecceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEccCEEEEeecccCC--CCCchhhHHH
Confidence            3468999999998764  468899999999999997543 2346899999999999999999999875  4455677888


Q ss_pred             HHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccc-eeecccccccc-CCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079          130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-CMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAY  206 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~~  206 (331)
                      ..+.++++||||++|+....+. ...+.++...+..... .+++....... ....+..++++++. +.|+..+    .+
T Consensus       123 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~-~~g~~~i----~~  197 (467)
T 1xrt_A          123 GSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSLK-EAGCVAF----TD  197 (467)
T ss_dssp             HHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSSSBCCHHHHH-HHTCCCB----CC
T ss_pred             HHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcccHHHHHHHH-HcCCEEE----Ec
Confidence            8889999999999998754322 2223333333322221 12322221111 01111233455555 3566554    33


Q ss_pred             CCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079          207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL  286 (331)
Q Consensus       207 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~  286 (331)
                      ++....+.+.++++++.|+++|+++.+|+++........    +.|.....+.....+...|...+.+.+.++...+.++
T Consensus       198 ~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~~~  273 (467)
T 1xrt_A          198 DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI----NEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHV  273 (467)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC------------------------CHHHHHHHHHHHHHHHCCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHH----hcCccchhcccccCChHHHHHHHHHHHHHHHHhCCCE
Confidence            444567899999999999999999999987654332111    1121111111222344455566677778888889999


Q ss_pred             EEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          287 YVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       287 ~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                      |+.|++..+.++.+++++++|+++++++||+++.+
T Consensus       274 hi~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~  308 (467)
T 1xrt_A          274 HIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLF  308 (467)
T ss_dssp             EESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC-
T ss_pred             EEEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhc
Confidence            99999988888999999999999999999998654

>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A*

Probab=99.95  E-value=3e-27  Score=225.72  Aligned_cols=239  Identities=21%  Similarity=0.191  Sum_probs=172.8

Q ss_pred             CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079           51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF  128 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~  128 (331)
                      |+.+++|+|++|++++.  ...++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+......  .+    
T Consensus         5 ~~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~--~~----   77 (480)
T 3gip_A            5 EKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-HPARHAWDASGKIVAPGFIDVHGHDDLMFVE--KP----   77 (480)
T ss_dssp             CCEEEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCEEEEEECTTSEEEECEEESSCCCTTHHHH--ST----
T ss_pred             ccCCEEEECcEEECCCCCeeeeeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEccCEEeccccccccccC--Ch----
Confidence            55789999999999875  478999999999999998643 3457899999999999999999998754111  11    


Q ss_pred             HHHHHHHhCCceEEecC---------cCCCCC-cH---------HHHHHHHHHHh--ccceeecccccccc---------
Q 020079          129 SGQAAALAGGTTMHIDF---------VIPING-SL---------TAGFEAYEKKA--KNSCMDYGFHMAIT---------  178 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~---------~~~~~~-~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~---------  178 (331)
                       +....+++||||+++.         ....+. ..         ++.+..+.+..  ....+++.++.+..         
T Consensus        78 -~~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g~  156 (480)
T 3gip_A           78 -DLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRD  156 (480)
T ss_dssp             -TCHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSS
T ss_pred             -hHHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCCCCceEEEccccHHHHHHhcCC
Confidence             1234589999999983         111100 00         01122222221  12344544432211         


Q ss_pred             ---CCChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079          179 ---KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG  252 (331)
Q Consensus       179 ---~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G  252 (331)
                         ..+.+.++++.++.+   +.|+.+++.++.+......+.+++.++++.++++|.++.+|+++....           
T Consensus       157 ~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~~-----------  225 (480)
T 3gip_A          157 PQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNEADG-----------  225 (480)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTTGGGCCHHHHHHHHHHHHHTTCEEEEECSCSSTT-----------
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCCcccCCHHHHHHHHHHHHHcCCEEEEEecCcccc-----------
Confidence               123455666666653   479999998876654445688999999999999999999999764321           


Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC---------CHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------SMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~---------~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                                     +..++.+.+.+++..|+++|++|++         +.+.++.+++++++|++|++++|||+..++.
T Consensus       226 ---------------~~~a~~e~i~la~~~g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~  290 (480)
T 3gip_A          226 ---------------VEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTI  290 (480)
T ss_dssp             ---------------HHHHHHHHHHHHHHHCCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCEEEEECSCSCEEEE
T ss_pred             ---------------HHHHHHHHHHHHHHhCCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCceEEEeeccccCcch
Confidence                           1356778889999999999999998         4788999999999999999999999998854

>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis}

Probab=99.95  E-value=8.6e-27  Score=220.97  Aligned_cols=259  Identities=19%  Similarity=0.235  Sum_probs=183.3

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeC-CCCC---CCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP-NINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF  128 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~-~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~  128 (331)
                      ++++|+|++|++++...+++|+|+||+|++|++ ....   +++.++||++|++|+|||||+|+|+..+  +..++++++
T Consensus         4 m~~li~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~e~~~   81 (452)
T 2gwn_A            4 MKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREP--GLTHKATIA   81 (452)
T ss_dssp             SEEEEEEEEEEETTEEEEEEEEEETTEEEEEEESCCCTTCCTTCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHH
T ss_pred             ccEEEECeEEECCCceeeeeEEEECCEEEEEecCCCccccCCCCCeEEeCCCCEEecCEEeeccccCCC--CCCcHHHHH
Confidence            468999999999876678899999999999997 5332   2346899999999999999999999876  555778888


Q ss_pred             HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079          129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY  206 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~  206 (331)
                      ...+.++++||||++|+....+. ...+.++...+.. ....+++.++.......   .+++.++. ..|..++|.+++.
T Consensus        82 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~-~~g~~g~k~~~~~  157 (452)
T 2gwn_A           82 SESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDN---IDEIKRVD-KHLVPGLKLFLGS  157 (452)
T ss_dssp             HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSSC---HHHHHTCC-TTSCSCEEEESSS
T ss_pred             HHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCCC---HHHHHHHH-HcCCCEEEEEecc
Confidence            88999999999999998754332 3334444433332 22455555554443322   23454444 4578889988764


Q ss_pred             CC--CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHH-HHcCC-CCcccccccCChHHHHHHHHHHHHHHHhc
Q 020079          207 KG--SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM-IELGI-TGPEGHALSRPPLLEGEATTRAIRLAEFV  282 (331)
Q Consensus       207 ~~--~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~-~~~G~-~~~~~~~~~~~~~~e~~~i~~~~~l~~~~  282 (331)
                      ..  ....+.+.+++.++   +.+.++..|+++...+......+ ...|. ..+..|...+|+..|...+++.+++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~G~~~~~~~h~~~~~~~~~~~~l~~~~~la~~~  234 (452)
T 2gwn_A          158 STGNMLVDNKETLEKIFG---ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERM  234 (452)
T ss_dssp             CCGGGBCCCHHHHHHHHH---HCCSCEEEECCCHHHHHHHHHHHHHHHCSCCCGGGHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHH---HcCCEEEEcCCCHHHHHhHHhhhhhhcCcccchhhccccCChHHHHHHHHHHHHHHHHh
Confidence            31  12235666665544   45889999998766554443332 34453 45555656678888888999999999999


Q ss_pred             CCCEEEEeCCCHHHHHHHHH---HHHcCCCEEEecCCccccch
Q 020079          283 NTPLYVVHVMSMDAMEEIAK---ARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       283 g~~~~i~H~~~~~~~~~i~~---~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      |.++++.|+++...++.+++   +++.  +|+++++||++.+.
T Consensus       235 g~~v~i~H~~~~~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~  275 (452)
T 2gwn_A          235 NARLHILHLSTEKELSLFRNDIPTAQK--RITSEVCVHHLWFS  275 (452)
T ss_dssp             TCCEEECCCCCTGGGGGSCCSSCGGGC--SEEEEEEHHHHHCC
T ss_pred             CCCEEEEeCCCHHHHHHHHHhhcccCC--CeEEEEchHHhhcC
Confidence            99999999987766666666   2443  68999999987643

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*

Probab=99.92  E-value=2.6e-24  Score=201.69  Aligned_cols=249  Identities=17%  Similarity=0.098  Sum_probs=158.8

Q ss_pred             CccEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC-----CCC
Q 020079           52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SET  123 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-----~~~  123 (331)
                      |.+++|+|++|++++.   .++++|+|+||||++|++....+++.++||++|++|+|||||+|+|+......     ...
T Consensus         3 ~~~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~   82 (423)
T 3feq_A            3 LTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQP   82 (423)
T ss_dssp             -CEEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEECSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSC
T ss_pred             ceEEEEEccEEEeCCCCcccCCceEEEECCEEEEecCCCCCCCCCeEEeCCCCEECCCeeeeEeeecccCCChhhhhcCC
Confidence            4578999999999874   35789999999999999865445577999999999999999999999876221     011


Q ss_pred             hhhH----HHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc------c-------------------
Q 020079          124 IDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF------H-------------------  174 (331)
Q Consensus       124 ~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------------------  174 (331)
                      ++..    ....+.++++||||++|++.... ...+.++.....+++.......      +                   
T Consensus        83 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~~~~~~~~g~r~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (423)
T 3feq_A           83 NILAAIRSLPILDAMLSRGFTSVRDAGGADW-SLMQAVETGLVSGPRIFPSGKALSQTGGHGDFRPRGDLLEPCSCCFRT  161 (423)
T ss_dssp             HHHHHHTHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCSCEEECCCSEEECTTSTTCCCCC---CCCCCSSCCT
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCcccccCCCCccccccccccccccccccc
Confidence            2222    23445679999999999875331 2222222221122221111000      0                   


Q ss_pred             ---ccccCCChhhHHHHHHHHHHhCCCeEEEEEe--------cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHH
Q 020079          175 ---MAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE  243 (331)
Q Consensus       175 ---~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~  243 (331)
                         .......++..+.++++. +.|.+.+|++..        +++...++++.++++++.|+++|+++++|+.+...+..
T Consensus       162 ~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~  240 (423)
T 3feq_A          162 GAIARVVDGVEGVRLAVREEI-QKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRAIAR  240 (423)
T ss_dssp             TCSEEECCSHHHHHHHHHHHH-HTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHHHHH
T ss_pred             cccceecCCHHHHHHHHHHHH-HcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence               001122244556666666 679999999875        34455789999999999999999999999875554433


Q ss_pred             HHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEE---------------EeCCC---------HHHHHH
Q 020079          244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV---------------VHVMS---------MDAMEE  299 (331)
Q Consensus       244 ~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i---------------~H~~~---------~~~~~~  299 (331)
                      .    .+.|.....+ +....        ++.++++.+.|+.++-               .+++.         ......
T Consensus       241 ~----l~~g~~~i~H-~~~~~--------~~~~~~l~~~gv~~~pt~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  307 (423)
T 3feq_A          241 A----VRCGVRTIEH-GNLVD--------EAAAKLMHEHGAFVVPTLVTYDALAKHGAEFGMPPESVAKVASVQQKGRES  307 (423)
T ss_dssp             H----HHHTCCEEEE-EEECC--------HHHHHHHHHHTCEEECCTHHHHHHHHHTGGGTCCTTTSSTHHHHHHHHHHH
T ss_pred             H----HHcCCCEEec-cCcCC--------HHHHHHHHHCCCccccchHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            3    3456543332 22211        2234555556654311               12222         125567


Q ss_pred             HHHHHHcCCCEEEecC
Q 020079          300 IAKARKAGPNFLNTTI  315 (331)
Q Consensus       300 i~~~~~~Gi~v~~~~~  315 (331)
                      ++.+.++|++|..++.
T Consensus       308 ~~~l~~~Gv~v~~gTD  323 (423)
T 3feq_A          308 LEIYANAGVKMGFGSD  323 (423)
T ss_dssp             HHHHHHHTCCBCCCCC
T ss_pred             HHHHHHCCCEEEECCC
Confidence            8999999999987655

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*

Probab=99.92  E-value=2.5e-24  Score=203.46  Aligned_cols=255  Identities=19%  Similarity=0.189  Sum_probs=165.7

Q ss_pred             CCCccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC--CCCceEEeCCCCeeecccccccccccCCCC-C--
Q 020079           50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--  120 (331)
Q Consensus        50 ~~~~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~--~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~--  120 (331)
                      .|+.+++|+|++|+++++    .++++|+|+||+|++||+....  .++.++||++|++|+|||||+|+|+.+... +  
T Consensus         3 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~   82 (447)
T 4f0r_A            3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVLMPGLINLHGHSAMSLLRGLA   82 (447)
T ss_dssp             --CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHTTSCEEEEEEEEEEEEEECEEEEEECGGGGGGTTSS
T ss_pred             CCcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccccCCCCeEEeCCCcEEeeCccchhhChhhHhhccCC
Confidence            356789999999998653    4689999999999999985432  245789999999999999999999965421 1  


Q ss_pred             -------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc--
Q 020079          121 -------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM--  175 (331)
Q Consensus       121 -------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  175 (331)
                                         ..++++.+.    ....++++||||++|+...    .....+...+.+.+..+......  
T Consensus        83 ~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~~~~~  158 (447)
T 4f0r_A           83 DDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMYFY----NAAVARAGLASGMRTFVGCSILEFP  158 (447)
T ss_dssp             CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECBSC----HHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred             CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhcCCC
Confidence                               123444433    3445788999999998432    23344445555555433332221  


Q ss_pred             -cccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH-------
Q 020079          176 -AITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ-------  245 (331)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~-------  245 (331)
                       ......++.++++.++.++ .|...+++.+.++..+.++++.++++++.|+++|+++++|+ ++..++....       
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~~~g~~~  238 (447)
T 4f0r_A          159 TNYASNADDYIAKGMAERSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVKEHGQRP  238 (447)
T ss_dssp             CSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCH
T ss_pred             cccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCH
Confidence             1111223445555565533 36677888888888888999999999999999999999997 5545554432       


Q ss_pred             -HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          246 -KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       246 -~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                       +.+.+.|+.++.....+.....     .+.++++.+.|+.  +++++..     .....++++.+.|+++..++.
T Consensus       239 i~~~~~~g~~~~~~~~~H~~~~~-----~~~~~~~~~~g~~--~~~~p~~~~~~~~~~~~~~~~~~~Gv~v~lgTD  307 (447)
T 4f0r_A          239 LARLQRLGLLSPRLVAAHMVHLN-----DAEVELAARHGLS--TAHNPASNMKLASGISPVSKLMDAGVAVGIGTD  307 (447)
T ss_dssp             HHHHHHHTCCSTTEEEEECCSCC-----HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHHHTTCEEEECCC
T ss_pred             HHHHHHcCCCCCCcEEEeccCCC-----HHHHHHHHHcCCE--EEECchhhhhcCCCCCcHHHHHHCCCcEEEeCC
Confidence             3456677766553332222111     1234555566664  4454321     223457788889998887654

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}

Probab=99.92  E-value=1.2e-23  Score=199.94  Aligned_cols=254  Identities=16%  Similarity=0.148  Sum_probs=165.9

Q ss_pred             CCccEEEECcEEEeCCC----------ceeeeEEEeCCEEEEeeCCCC-CCCCceEEeCCCCeeecccccccccccCCCC
Q 020079           51 SSSKILIKGGTVVNAHH----------QQIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~----------~~~~~v~i~~g~I~~ig~~~~-~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ++++++|+|++|+++++          .++++|+|+||+|++||+... .+++.++||++|++|+|||||+|+|+.+...
T Consensus        21 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~  100 (468)
T 3lnp_A           21 AHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAMSLF  100 (468)
T ss_dssp             CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTTCCCCEEEEEECCSEEEEECEEECSCCGGGGGG
T ss_pred             ccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCccccCCCCeEEeCCCcEEEeCeechhhChhhhhh
Confidence            45689999999998653          358999999999999998654 2346789999999999999999999965421


Q ss_pred             -C---------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc
Q 020079          120 -G---------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF  173 (331)
Q Consensus       120 -~---------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (331)
                       +                     ..++++.+.    ....++++||||+.|+...    .....+...+.+.+..+....
T Consensus       101 ~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~  176 (468)
T 3lnp_A          101 RGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFY----PQQSGEAALAAGIRAVCFAPV  176 (468)
T ss_dssp             TTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECCSC----HHHHHHHHHHHTCEEEEEEEE
T ss_pred             ccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEeccc
Confidence             1                     133444433    3455789999999998432    233344445555444333322


Q ss_pred             cc-c--ccCCChhhHHHHHHHHHH-hCCC-----eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHH
Q 020079          174 HM-A--ITKWDEVVSDEMEVMVKE-KGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE  243 (331)
Q Consensus       174 ~~-~--~~~~~~~~~~~~~~~~~~-~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~  243 (331)
                      .. +  .....++..+...++.+. .+..     .++..+.++..+.++++.++++++.|+++|+++++|+ ++..+...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~  256 (468)
T 3lnp_A          177 LDFPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSE  256 (468)
T ss_dssp             CSSCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHH
T ss_pred             cCCCcccccCHHHHHHHHHHHHHHhhcCCcccCceEEEEEEcCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence            21 1  111223444555555433 2433     6777888888888999999999999999999999997 55455544


Q ss_pred             HH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCE
Q 020079          244 GQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNF  310 (331)
Q Consensus       244 ~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v  310 (331)
                      ..        +.+.+.|+++++....+.....+     +.++++.+.|+.  ++||+..     .....++.+.+.|+++
T Consensus       257 ~~~~~g~~~i~~~~~~g~l~~~~~~~H~~~~~~-----~~~~~l~~~g~~--v~~~p~s~~~~~~~~~~~~~~~~~Gv~v  329 (468)
T 3lnp_A          257 SLETFNKRPTQRLADIGFLNERVSCVHMTQVDD-----GDIKILQKTGAS--IIHCPESNLKLASGFCPIAKLSAANIPL  329 (468)
T ss_dssp             HHHHHSSCHHHHHHHTTCCSTTEEEEECCSCCH-----HHHHHHHHHCCE--EEECHHHHHHTTCCCCCHHHHHHTTCCE
T ss_pred             HHHHhCCCHHHHHHHcCCCCCCeEEEeccCCCH-----HHHHHHHhcCCE--EEEChhhhhhcCCCCCCHHHHHHCCCeE
Confidence            33        34566777666543333221111     234566666764  5555432     2233578888999998


Q ss_pred             EEecC
Q 020079          311 LNTTI  315 (331)
Q Consensus       311 ~~~~~  315 (331)
                      ..++.
T Consensus       330 ~lgtD  334 (468)
T 3lnp_A          330 AIGTD  334 (468)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            87665

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}

Probab=99.92  E-value=7.1e-24  Score=200.56  Aligned_cols=254  Identities=17%  Similarity=0.178  Sum_probs=167.3

Q ss_pred             CCccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCC--CCCCceEEeCCCCeeecccccccccccCCCCC----
Q 020079           51 SSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG----  120 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~--~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~----  120 (331)
                      ++.+++|+|++|+++++    .++++|+|+||+|++||+...  ..++.++||++|++|+|||||+|+|+.+....    
T Consensus         6 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~   85 (451)
T 4dyk_A            6 NPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGLAD   85 (451)
T ss_dssp             CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHTTTCEEEEEEEEEEEEEECEEECCCCGGGGGGTTSSC
T ss_pred             chhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCccccccCCCCeEEeCCCCEEeecccchhhChhhHHhccCCC
Confidence            45789999999999652    368999999999999998542  23457899999999999999999999654221    


Q ss_pred             ------------------CCChhhHHHHH----HHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---
Q 020079          121 ------------------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---  175 (331)
Q Consensus       121 ------------------~~~~~~~~~~~----~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  175 (331)
                                        ..++++++...    ..++++||||++|+...    .....+...+.+.+..+......   
T Consensus        86 ~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~a~~~~g~r~~~~~~~~~~~~  161 (451)
T 4dyk_A           86 DLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFY----PQAICGVVHDSGVRAQVAIPVLDFPI  161 (451)
T ss_dssp             SSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC----HHHHHHHHHHHTCEEEEEEEECSSCB
T ss_pred             CCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhhCCCC
Confidence                              13344444433    44569999999998432    23334444555544433322211   


Q ss_pred             cccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------
Q 020079          176 AITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------  245 (331)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------  245 (331)
                      ......++..++..++.++ .+...++..+.++..+.++++.++++++.|+++|+++++|+ ++..+.....        
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~i  241 (451)
T 4dyk_A          162 PGARDSAEAIRQGMALFDDLKHHPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMERNGERPL  241 (451)
T ss_dssp             TTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCHH
T ss_pred             ccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHH
Confidence            1111223445555555533 35667888888888888999999999999999999999997 5555554433        


Q ss_pred             HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          246 KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       246 ~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+.+.|+++++....+.....+     +.++++.+.|+.  ++||+..     .....++++.++|++++.++.
T Consensus       242 ~~~~~~g~~~~~~~~~H~~~~~~-----~~~~~l~~~g~~--v~~~p~s~~~~~~~~~~~~~~~~~Gv~v~lgtD  309 (451)
T 4dyk_A          242 ARLHRLGLLGPRFQAVHMTQVDN-----DDLAMLVETNSS--VIHCPESNLKLASGFCPVEKLWQAGVNVAIGTD  309 (451)
T ss_dssp             HHHHHTTCCSTTEEEEECCCCCH-----HHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHHHHTCCEEECCC
T ss_pred             HHHHHCCCCCCCeEEEECCCCCH-----HHHHHHHHcCCE--EEEChhhhhhccCCcccHHHHHhCCCeEEEECC
Confidence            34667777766543333221111     234556666764  5555422     223467888889999887665

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*

Probab=99.91  E-value=1.5e-23  Score=197.04  Aligned_cols=220  Identities=17%  Similarity=0.168  Sum_probs=145.0

Q ss_pred             ccEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC-----CCCh
Q 020079           53 SKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETI  124 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-----~~~~  124 (331)
                      .+++|+|++|++++.   .++++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+......     ..++
T Consensus         4 ~~~~i~n~~i~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~~~~~~~~~   83 (426)
T 2r8c_A            4 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPN   83 (426)
T ss_dssp             CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSCH
T ss_pred             ccEEEEeeEEEeCCCCcccCCceEEEECCEEEEEcCCCCCCCCCeEEECCCCEEcCCeEeeeeccccccCCchhhccCCH
Confidence            468999999999863   35789999999999999864445567999999999999999999999876321     0122


Q ss_pred             hhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc---------------------------
Q 020079          125 DDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF---------------------------  173 (331)
Q Consensus       125 ~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  173 (331)
                      +...    ...+.++++||||++|++.... ...+.++.....+++.......                           
T Consensus        84 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~i~~~~~~gpri~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  162 (426)
T 2r8c_A           84 VLVTLRAVPIMRAMLRRGFTTVRDAGGAGY-PFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCV  162 (426)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSCSSSSBC
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCCcccCCCCCcccccccccccccccccccc
Confidence            2221    3345679999999999975432 2222222211122221111000                           


Q ss_pred             ----cccccCCChhhHHHHHHHHHHhCCCeEEEEEe--------cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          174 ----HMAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       174 ----~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                          +.......++..+.++++. +.|++.+|++.+        +.+...++++.++++++.|+++|+++++|+.+...+
T Consensus       163 ~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i  241 (426)
T 2r8c_A          163 RVGALGRVADGVDEVRRAVREEL-QMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAI  241 (426)
T ss_dssp             CTTCCEEECCSHHHHHHHHHHHH-HHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHHHH
T ss_pred             cccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence                0011122344556666666 679999999876        334457899999999999999999999998754432


Q ss_pred             HHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEE
Q 020079          242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL  311 (331)
Q Consensus       242 ~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~  311 (331)
                      ...                                   .+.|.. .+.|+...+. +.++++++.|+.+.
T Consensus       242 ~~a-----------------------------------l~~G~~-~i~H~~~~~~-~~~~~~~~~gv~~~  274 (426)
T 2r8c_A          242 ARA-----------------------------------VRCGVR-TIEHGNLIDD-ETARLVAEHGAYVV  274 (426)
T ss_dssp             HHH-----------------------------------HHTTCS-EEEECTTCCH-HHHHHHHHTTCEEE
T ss_pred             HHH-----------------------------------HHcCCC-EEecCCcCCH-HHHHHHHHcCCeEe
Confidence            211                                   123443 3677754433 66777888887664

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}

Probab=99.91  E-value=6.4e-24  Score=202.27  Aligned_cols=253  Identities=19%  Similarity=0.184  Sum_probs=166.7

Q ss_pred             CccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCCC---CCceEEeCCCCeeecccccccccccCCCCC----
Q 020079           52 SSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG----  120 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~~----  120 (331)
                      ..+++|+|++|+++++    .++++|+|+||+|++|++....+   ++.++||++|++|+|||||+|+|+.++...    
T Consensus        13 ~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~~   92 (472)
T 4dzh_A           13 PCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVAD   92 (472)
T ss_dssp             EEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHEEEEEEEEEEEEEEEECEEEEEECGGGGGGTTSSC
T ss_pred             cCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcCCCCeEEeCCCcEEEECccccccChhhHHhccccC
Confidence            3678999999998653    46899999999999999854322   256899999999999999999999774211    


Q ss_pred             ------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---
Q 020079          121 ------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---  175 (331)
Q Consensus       121 ------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  175 (331)
                                        ..++++.+.    ....++++||||++|+..    .....++...+.+.+..+......   
T Consensus        93 ~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~a~~~~g~r~~~~~~~~~~~~  168 (472)
T 4dzh_A           93 DLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYF----FADVQAAVYKQHGFRALVGAVIIDFPT  168 (472)
T ss_dssp             SCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECS----CHHHHHHHHHHTTCEEEEEEEECSSCC
T ss_pred             CCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEccc----CHHHHHHHHHHhCCeEEEEecccCCCc
Confidence                              123333333    334478999999999862    223344455555544433332221   


Q ss_pred             cccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------
Q 020079          176 AITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------  245 (331)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------  245 (331)
                      ......++.++++.++.++ .+...+++.+.++..+.++++.++++++.|+++|+++++|+ ++..+.....        
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~~g~~~i  248 (472)
T 4dzh_A          169 AWASSDDEYFARAGELHDQWRDDPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQYGQRPL  248 (472)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCHH
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCCHH
Confidence            1111223455555555533 35567888888888888999999999999999999999997 5655554443        


Q ss_pred             HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079          246 KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       246 ~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+.+.|+++++....+.....     .+.++++++.|+.  ++||+..     .....++++.++|++++.++.
T Consensus       249 ~~~~~~g~~~~~~~~~H~~~l~-----~~~i~~l~~~g~~--v~~~p~s~~~~~~~~~~~~~~~~~Gv~v~lgtD  316 (472)
T 4dzh_A          249 ARLDRLGLVNDRLIAVHMTQLT-----EAEIHLCAERGVS--VVHCPESNLKLASGFCPACALQRASVNLAIGTD  316 (472)
T ss_dssp             HHHHHHTCCSTTEEEEECCSCC-----HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHHHTTCEEEECCC
T ss_pred             HHHHHcCCCCCCeEEEeccCCC-----HHHHHHHHHcCCE--EEEChHHHHhcCCCCccHHHHHHCCCCEEEECC
Confidence            3456777776553332222111     1235566666765  4555421     223457888899999887665

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*

Probab=99.91  E-value=5.3e-23  Score=194.69  Aligned_cols=253  Identities=17%  Similarity=0.100  Sum_probs=162.6

Q ss_pred             EEEECc-EEEeCCC----ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC---------
Q 020079           55 ILIKGG-TVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG---------  120 (331)
Q Consensus        55 ~~i~n~-~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~---------  120 (331)
                      ++|+|+ .|+++++    .++++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+.++...         
T Consensus         2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~~~~   81 (456)
T 3ls9_A            2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERVT   81 (456)
T ss_dssp             EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCCCTTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGGGSSCC
T ss_pred             EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCCCCCCCeEEeCCCCEEecCeeecccccchhhhcccccCCCCC
Confidence            789999 6777664    37899999999999999975544567899999999999999999999754221         


Q ss_pred             -------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCC-----cHHHHHHHHHHHhccceeecc
Q 020079          121 -------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       121 -------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  172 (331)
                                         ..++++++.    ....++++||||+.|+....+.     .....++...+.+.+..+...
T Consensus        82 l~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~  161 (456)
T 3ls9_A           82 MASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARS  161 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCEEEEEcc
Confidence                               122333332    3345789999999998432221     223334555555555333222


Q ss_pred             cccc-----------ccCCChhhHHHHHHHHHHh-C---CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-C
Q 020079          173 FHMA-----------ITKWDEVVSDEMEVMVKEK-G---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E  236 (331)
Q Consensus       173 ~~~~-----------~~~~~~~~~~~~~~~~~~~-g---~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e  236 (331)
                      ....           .....++.+++..++.++. +   ...++..+.++..+.++++.++++++.|+++|+++++|+ +
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e  241 (456)
T 3ls9_A          162 SMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYE  241 (456)
T ss_dssp             CCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEECCCCTTTSCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             ccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            1110           0011233455555655332 3   345677788888888999999999999999999999997 5


Q ss_pred             CchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHH
Q 020079          237 NGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKA  303 (331)
Q Consensus       237 ~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~  303 (331)
                      +..+ ....        +.+.+.|+++++....+.....+     +.++++++.|+.  ++||+..     .....++++
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~i~H~~~~~~-----~~~~~l~~~g~~--~~~~p~s~~~l~~~~~~~~~~  313 (456)
T 3ls9_A          242 PLDA-GMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPR-----EEIPEFADAGVA--IAHLIAPDLRMGWGLAPIREY  313 (456)
T ss_dssp             TTHH-HHHHHHHSSCHHHHHHHTTCSSTTEEEEECCSCCG-----GGHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHH
T ss_pred             CchH-HHHHHHhCCCHHHHHHHcCCCCCCcEEEeccCCCH-----HHHHHHHHcCCE--EEEChhHHhhcCCCcchHHHH
Confidence            5444 3332        44667787766532222211111     234556666765  5555432     223467888


Q ss_pred             HHcCCCEEEecC
Q 020079          304 RKAGPNFLNTTI  315 (331)
Q Consensus       304 ~~~Gi~v~~~~~  315 (331)
                      .++|++++.++.
T Consensus       314 ~~~Gv~v~lgtD  325 (456)
T 3ls9_A          314 LDAGITVGFGTT  325 (456)
T ss_dssp             HHTTCEEEECCC
T ss_pred             HHCCCcEEEECC
Confidence            899999887664

>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9

Probab=99.90  E-value=5.6e-23  Score=196.57  Aligned_cols=253  Identities=15%  Similarity=0.089  Sum_probs=151.8

Q ss_pred             CccEEEECcE-EEeCC--------CceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC-
Q 020079           52 SSKILIKGGT-VVNAH--------HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-  121 (331)
Q Consensus        52 ~~~~~i~n~~-i~~~~--------~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-  121 (331)
                      +++++|+|++ |++++        ...+++|+|+||||++||+... +++.++||++|++|+|||||+|+|+..+.... 
T Consensus         9 ~~~~li~n~~~i~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~g~   87 (492)
T 2paj_A            9 QPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP-RPGETIVDATDCVIYPAWVNTHHHLFQSLLKGE   87 (492)
T ss_dssp             -CEEEEECBSEEBCCCCSSSSSCSBCCCCCEEEETTEEEEESSCCC-CTTCEEEECBTCEEEECEECCCCCGGGGGCCSC
T ss_pred             CCCeEEECCEEEEecCCccccccceecccEEEEECCEEEEEcCCCC-CCCCeEEECCCcEEeeCccccccChhhHhhcCc
Confidence            3568999999 99876        3467899999999999998653 33568999999999999999999997652110 


Q ss_pred             ----------------------CChhhHHHHHHH----HHhCCceEEecCcCCCCC-----cHHHHHHHHHHHhccceee
Q 020079          122 ----------------------ETIDDFFSGQAA----ALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMD  170 (331)
Q Consensus       122 ----------------------~~~~~~~~~~~~----~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~  170 (331)
                                            .++++++...+.    ++++||||++|+....+.     ......+...+.+.+....
T Consensus        88 ~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~  167 (492)
T 2paj_A           88 PAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLL  167 (492)
T ss_dssp             C-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcCCEEEEE
Confidence                                  234666555555    899999999998642221     1222233333333332221


Q ss_pred             cccc-cc------cc-----CCChhhHHHHHHHHHHh-CC---CeEEEEEecCCC-CcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          171 YGFH-MA------IT-----KWDEVVSDEMEVMVKEK-GI---NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       171 ~~~~-~~------~~-----~~~~~~~~~~~~~~~~~-g~---~~ik~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      .... .+      ..     ...++.+++++++.+.. +.   ..++.++.+++. ..++++.++++++.|+++|+++++
T Consensus       168 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~  247 (492)
T 2paj_A          168 RGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHS  247 (492)
T ss_dssp             ECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             chhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEecccCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence            1110 00      00     01123455666666432 21   247777777776 678999999999999999999999


Q ss_pred             EcCC-chhhHHH--------HHHHHHcCCCCccc---ccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HH
Q 020079          234 HAEN-GDAVFEG--------QKRMIELGITGPEG---HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DA  296 (331)
Q Consensus       234 H~e~-~~~~~~~--------~~~~~~~G~~~~~~---~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~  296 (331)
                      |+.+ ..+.+..        .+.+.+.|+.++..   |..+..   +     +.++++++.|+.  +++|+..     ..
T Consensus       248 H~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~i~H~~~~~---~-----~~i~~l~~~gv~--v~~~p~~~~~l~~~  317 (492)
T 2paj_A          248 HLSETVGYQDSAYSMYGKSPVAFCGEHDWLGSDVWYAHLVKVD---A-----DEIALLAQTGTG--VAHCPQSNGRLGSG  317 (492)
T ss_dssp             ECC-------------CCCHHHHHHHTTCCSTTEEEESCCSCC---H-----HHHHHHHHHTCE--EEECHHHHHCC---
T ss_pred             EeCCChHHHHHHHHHcCCCHHHHHHHCCCCCCCcEEEEEecCC---H-----HHHHHHHHcCCE--EEECchhhcccCCC
Confidence            9854 3333322        23455667655442   222211   1     124455555643  4555321     22


Q ss_pred             HHHHHHHHHcCCCEEEecC
Q 020079          297 MEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       297 ~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ...++.+.+.|++++.++.
T Consensus       318 ~~p~~~~~~~Gv~v~lgTD  336 (492)
T 2paj_A          318 ICPVREMADAGVPVSIGVD  336 (492)
T ss_dssp             --CCTTHHHHTCCEEECCC
T ss_pred             CCCHHHHHHCCCcEEEeCC
Confidence            3446667788888876553

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A

Probab=99.90  E-value=4.6e-23  Score=193.92  Aligned_cols=179  Identities=17%  Similarity=0.137  Sum_probs=112.5

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCC-C---------
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------  120 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~---------  120 (331)
                      +.+++|+|++|++++  .+++|+|+||||++||+....+ ++.++||++|++|+|||||+|+|+..... +         
T Consensus         7 ~~~~li~n~~v~~~~--~~~~v~I~~g~I~~vg~~~~~~~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~   84 (430)
T 1ra0_A            7 NALQTIINARLPGEE--GLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGT   84 (430)
T ss_dssp             -CCCEEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESCEEEEEECTTTTTCTTSSSCCSSCC
T ss_pred             CCcEEEEeeEecCCC--ceeEEEEECCEEEEeecCCCCCCCCcceEccCCCEecccccccccchhhhhhcCCCcCCCCCC
Confidence            357899999999875  6889999999999999864432 35689999999999999999999976421 1         


Q ss_pred             -------------CCChhhHHHHH----HHHHhCCceEEecCcCCCCCc--HHHHHHHHHHHhccceeeccccc-cc--c
Q 020079          121 -------------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGS--LTAGFEAYEKKAKNSCMDYGFHM-AI--T  178 (331)
Q Consensus       121 -------------~~~~~~~~~~~----~~~l~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~--~  178 (331)
                                   ..++++++...    +.++++||||++|+.......  ..+.+....+. .+..+++.... +.  .
T Consensus        85 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  163 (430)
T 1ra0_A           85 LFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQE-VAPWIDLQIVAFPQEGI  163 (430)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHH-HTTTCEEEEEEECTTCS
T ss_pred             HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCChHHHHHHHHHHHHHh-hhhhEEEEEEecCCccc
Confidence                         11335554433    445799999999986432211  12222211111 11222221110 00  0


Q ss_pred             CCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc--CCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      ...++..+.++++. +.|...+..  .++.++.  ++++.++++++.|+++|+++++|+.
T Consensus       164 ~~~~~~~~~~~~~~-~~g~~~~~~--~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~  220 (430)
T 1ra0_A          164 LSYPNGEALLEEAL-RLGADVVGA--IPHFEFTREYGVESLHKTFALAQKYDRLIDVHCD  220 (430)
T ss_dssp             SSSTTHHHHHHHHH-HTTCSEECC--CGGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             ccCchHHHHHHHHH-HhCCCeEee--eecccccccccHHHHHHHHHHHHHcCCCEEEEEC
Confidence            01223344466665 455444322  1333443  6789999999999999999999984

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}

Probab=99.90  E-value=5.7e-22  Score=184.62  Aligned_cols=257  Identities=16%  Similarity=0.070  Sum_probs=153.5

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC----------CC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~----------~~  121 (331)
                      +.+++|+|++|+++...  ++|+|+||||++|++.... +..++||++|++|+|||||+|+|+.++..          +.
T Consensus         4 ~~~~li~n~~v~~~~~~--~~v~I~~g~I~~vg~~~~~-~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~g~   80 (403)
T 2qt3_A            4 DFDLIIRNAYLSEKDSV--YDIGIVGDRIIKIEAKIEG-TVKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFWSR   80 (403)
T ss_dssp             CEEEEEEEEEETTTTEE--EEEEEETTEEEEEESSCCS-CEEEEEECTTCBEEECEEEEEECGGGTTTTCSSSSCTTCSS
T ss_pred             ccceEEEeeEecCCCee--EEEEEECCEEEEeecCCCC-CccceEcCCCCEecccceeeeeccchhhcccccccccccCC
Confidence            46799999999986543  8999999999999986543 24579999999999999999999987532          21


Q ss_pred             C-----------------ChhhHHH----HHHHHHhCCceEEecCcCCCCCc---HHHHH-HHHHHHhccceeecc-ccc
Q 020079          122 E-----------------TIDDFFS----GQAAALAGGTTMHIDFVIPINGS---LTAGF-EAYEKKAKNSCMDYG-FHM  175 (331)
Q Consensus       122 ~-----------------~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~-~~~  175 (331)
                      .                 ++++++.    ..+.++++||||++++....+..   ..+.+ +...+.......... +..
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (403)
T 2qt3_A           81 PYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTKAVEAVLEAKEELKDLIDIQVVAFAQ  160 (403)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTTTTHHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             CcccCcCHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCccccchHHHHHHHHHHhhcceeEEEEEcCC
Confidence            0                 2223332    35667899999998665432211   11222 222221111111110 100


Q ss_pred             cccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC-Cchhh----HHHHHHHHH
Q 020079          176 AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAV----FEGQKRMIE  250 (331)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e-~~~~~----~~~~~~~~~  250 (331)
                      ......++..+.++++. +.|...++. +.++.....+++.++++++.|+++|+++++|+. +..+.    +...+.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~p~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~  238 (403)
T 2qt3_A          161 SGFFVDLESESLIRKSL-DMGCDLVGG-VDPATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVGVYSINRLAQKTIE  238 (403)
T ss_dssp             TCTTTSTTHHHHHHHHH-HTTCSEEEC-BCTTTTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCcchHHHHHHHH-hcCCCeEEE-ecCCCCCCChHHHHHHHHHHHHHcCCCeEEEeCCcccchhHHHHHHHHHHHH
Confidence            00111223344455555 566655543 245545556679999999999999999999974 43322    222344556


Q ss_pred             cCCCCcccccccCChHHH--HHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecC
Q 020079          251 LGITGPEGHALSRPPLLE--GEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       251 ~G~~~~~~~~~~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .|+ ..+....+.....+  .....+.++++++.|+.+.++... ......++++.++|+++..++.
T Consensus       239 ~g~-~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~~-~~~~~~~~~~~~~Gv~v~lgtD  303 (403)
T 2qt3_A          239 NGY-KGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSS-TPPTMPVIKLLEAGINLGCASD  303 (403)
T ss_dssp             TTC-TTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEEEEETTT-CCTTCCHHHHHHTTCEEEEECC
T ss_pred             cCC-CCCeEEEehhhhccCChhhHHHHHHHHHHcCCEEEECCCC-CCCCCCHHHHHHcCCcEEEeCC
Confidence            776 33322222221111  111245667777788765554432 2334567888899999987665

>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A

Probab=99.90  E-value=8.5e-23  Score=194.67  Aligned_cols=267  Identities=16%  Similarity=0.066  Sum_probs=171.6

Q ss_pred             ccEEEECcEEEeCCC-----ceeeeEEEeC-CEEEEeeCCCCC--------CCCceEEeC-CCCeeecccccccccccCC
Q 020079           53 SKILIKGGTVVNAHH-----QQIADVYVED-GIVVAVQPNINV--------GDDVKVLDA-TGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~-----~~~~~v~i~~-g~I~~ig~~~~~--------~~~~~~id~-~g~~v~PG~ID~H~H~~~~  117 (331)
                      .+++|+|..|.+...     .++++|+|+| |||++|++....        .++.++||+ +|++|+|||||+|+|+.+.
T Consensus        31 ~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~~~  110 (476)
T 4aql_A           31 LAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQY  110 (476)
T ss_dssp             CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGGGG
T ss_pred             ccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchHHH
Confidence            568999999987542     3689999998 999999986321        134689995 5899999999999999654


Q ss_pred             CC-CC--------------------CChhh----HHH-HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeec
Q 020079          118 FM-GS--------------------ETIDD----FFS-GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDY  171 (331)
Q Consensus       118 ~~-~~--------------------~~~~~----~~~-~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (331)
                      .. +.                    ..+++    .+. ....++++||||+.++............+...+.+.+..+..
T Consensus       111 ~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~r~~~~~  190 (476)
T 4aql_A          111 SFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGK  190 (476)
T ss_dssp             GGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCCEEEEee
Confidence            21 11                    01111    112 234689999999997754332233334555666665543332


Q ss_pred             cccc-c-----ccCCChhhHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhh
Q 020079          172 GFHM-A-----ITKWDEVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV  241 (331)
Q Consensus       172 ~~~~-~-----~~~~~~~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~  241 (331)
                      .... +     .....++.+++.++++++   .+...++..+.++..+.++++.++++++.|+++|+++++|+ |+..++
T Consensus       191 ~~~d~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~~~v~~~l~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~  270 (476)
T 4aql_A          191 VCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEV  270 (476)
T ss_dssp             EECSCCSSCTTSCCCHHHHHHHHHHHHHHHHHHTCSSEEECBEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSHHHH
T ss_pred             ccccCCCCCcccccCHHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCceEEEecCCHHHH
Confidence            2111 0     111223344455554432   34557888888999999999999999999999999999996 766665


Q ss_pred             HHHH----------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHc
Q 020079          242 FEGQ----------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKA  306 (331)
Q Consensus       242 ~~~~----------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~  306 (331)
                      +...          +.+.+.|+++++....+.....     ++.++++.+.|+.  ++||+..     .++..++++.++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~-----~~~~~~l~~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~  343 (476)
T 4aql_A          271 EAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLS-----AEELNVFHERGAS--IAHCPNSNLSLSSGFLNVLEVLKH  343 (476)
T ss_dssp             HHHHHHCTTSSSHHHHHHTTTCCSTTEEEEECTTCC-----HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHHHT
T ss_pred             HHHHHHhCCCCCHHHHHHHcCCCCCCEEEEeCCCCC-----HHHHHHHHHcCCE--EEECchhhhhhCcchHHHHHHHHC
Confidence            5443          3467788887664333332221     2235666667765  5666532     234578899999


Q ss_pred             CCCEEEecCCccccchhhhh
Q 020079          307 GPNFLNTTIPLCDSCSNIIR  326 (331)
Q Consensus       307 Gi~v~~~~~p~~~~~~~~~~  326 (331)
                      |++|+.++.-......++..
T Consensus       344 Gv~v~lGtD~~~~~~~~~~~  363 (476)
T 4aql_A          344 EVKIGLGTDVAGGYSYSMLD  363 (476)
T ss_dssp             TCEEEECCCTTTSSCCCHHH
T ss_pred             CCcEEEeCCCCCCCCCCHHH
Confidence            99999887743333333333

>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A

Probab=99.89  E-value=3.3e-22  Score=191.57  Aligned_cols=232  Identities=18%  Similarity=0.225  Sum_probs=153.8

Q ss_pred             ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079           53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG  130 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~  130 (331)
                      ++++|+|++|++++.  ..+++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+...       ...
T Consensus        21 ~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~~-------~~~   92 (496)
T 1rk6_A           21 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSPGFIDSHTHDDNYLLK-------HRD   92 (496)
T ss_dssp             BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEECEEESSCCCTTHHHH-------CTT
T ss_pred             ccEEEECCEEEeCCCCceeccEEEEECCEEEEecCCCC-CCCCeEEeCCCCEEecCEeeeeecCCccccc-------cHH
Confidence            368999999998764  468899999999999997542 2346799999999999999999999764210       112


Q ss_pred             HHHHHhCCceEEecCcC-----CCC-------------------CcHHHHHHHHHHHhccceeecccccc----------
Q 020079          131 QAAALAGGTTMHIDFVI-----PIN-------------------GSLTAGFEAYEKKAKNSCMDYGFHMA----------  176 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~-----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------  176 (331)
                      .+.++++||||++++..     +..                   ......++..+..  ...+++.+..+          
T Consensus        93 ~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~g~~~~~~~~~~  170 (496)
T 1rk6_A           93 MTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAA--PPAVNAACMVGHSTLRAAVMP  170 (496)
T ss_dssp             CHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHS--CCSSEEEEEEEHHHHHHHHCS
T ss_pred             HHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHhcc--CCccceEEecccccceeeecc
Confidence            46788999999998742     110                   0111122222211  11222211110          


Q ss_pred             c--cCCChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHc
Q 020079          177 I--TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL  251 (331)
Q Consensus       177 ~--~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~  251 (331)
                      .  .....+...+++.+.+   +.|+..++....+......+.+++.++++.++++|.++.+|+++....          
T Consensus       171 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~~----------  240 (496)
T 1rk6_A          171 DLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEH----------  240 (496)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSSTT----------
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHcCCcEEeeccccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeCCCccc----------
Confidence            0  0112233444544442   468887765432211124577888899999999999999999754321          


Q ss_pred             CCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC---------CHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------SMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       252 G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~---------~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                                      +...+.+.++++.++|.++|+.|+.         +...++.+++++++| +|++++||++..+
T Consensus       241 ----------------~~~~l~~~~~~a~~~g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g-~v~~~~~~~~~~~  302 (496)
T 1rk6_A          241 ----------------IVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQ-DVSLDAYPYVAGS  302 (496)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHS-CEEEEECSCSCEE
T ss_pred             ----------------HHHHHHHHHHHHHHcCCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcC-CeEEEEeccCCCC
Confidence                            1345667778888999999999983         345577888889899 9999999977544

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9

Probab=99.89  E-value=2.5e-22  Score=189.40  Aligned_cols=191  Identities=17%  Similarity=0.104  Sum_probs=122.7

Q ss_pred             CccEEEECcEEEeCCC-----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCC-CC---
Q 020079           52 SSKILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~-----~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~---  121 (331)
                      |.+++|+|++|++++.     ..+++|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+.++.. +.   
T Consensus         8 m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~g~~~~   87 (439)
T 2i9u_A            8 INLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHASQYKNLGIGMD   87 (439)
T ss_dssp             -CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCGGGTTSCEEEEEEEEEEECEEEEEEEGGGGGGTTCCCS
T ss_pred             cccEEEEeeEEEecCCccceEEeccEEEEECCEEEEecccccccCCCceEEcCCCeEEEecceecccccchHhhhCCcCC
Confidence            4678999999998762     35889999999999999753321 34589999999999999999999986421 10   


Q ss_pred             -C-----------------ChhhHHHH----HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccc---cc
Q 020079          122 -E-----------------TIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH---MA  176 (331)
Q Consensus       122 -~-----------------~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  176 (331)
                       .                 ++++++..    .+.++++||||++|+...........++...+.+.+........   .+
T Consensus        88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~p  167 (439)
T 2i9u_A           88 KELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCP  167 (439)
T ss_dssp             SCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCC
T ss_pred             CCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEEEEeeeccccCC
Confidence             0                 22233322    35689999999999754321122334444444444432221111   11


Q ss_pred             --ccCCChhhHHHHHHHHHH--hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC-CchhhH
Q 020079          177 --ITKWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVF  242 (331)
Q Consensus       177 --~~~~~~~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e-~~~~~~  242 (331)
                        .....++..++..++.++  .+...++.+++++....++.+.++++++.|+++|+++++|+. +..+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~  238 (439)
T 2i9u_A          168 DYLTENYITSLNDTEEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIA  238 (439)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCceEEEEecCCcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHHH
Confidence              001111233444455533  234457777777666678999999999999999999999985 444433

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C*

Probab=99.89  E-value=8.5e-23  Score=197.54  Aligned_cols=208  Identities=17%  Similarity=0.212  Sum_probs=146.7

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|+++.+..+++|+|+||||++||+....            .++.++||++|++|+|||||+|+|+..+  
T Consensus        65 ~~dllI~n~~Vid~~gi~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p--  142 (569)
T 1e9y_B           65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP--  142 (569)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCT--
T ss_pred             cCCEEEEeeEEECCCCcEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecCCCc--
Confidence            45799999999997666789999999999999975321            2356899999999999999999999765  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +     .    .+.++++||||++|++.....        .....++...+......+++.+.....   ....++++++
T Consensus       143 ~-----~----~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~~~~~~~~~~g~g~---~~~~~~l~e~  210 (569)
T 1e9y_B          143 Q-----Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGN---ASNDASLADQ  210 (569)
T ss_dssp             T-----H----HHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECC---CSCHHHHHHH
T ss_pred             H-----H----HHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhcccCceEEEECCCC---cCCHHHHHHH
Confidence            1     1    577899999999998542210        113334444444444445554432211   1234567777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA  271 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~  271 (331)
                      . +.|+.++|.+..    +..+++.++++++.|+++|+++++|+++..+...                       .+ . 
T Consensus       211 ~-~~Ga~gik~~~~----~~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~g~-----------------------~~-~-  260 (569)
T 1e9y_B          211 I-EAGAIGFKIHED----WGTTPSAINHALDVADKYDVQVAIHTDTLNEAGC-----------------------VE-D-  260 (569)
T ss_dssp             H-HTTCSEEEECGG----GCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCC-----------------------HH-H-
T ss_pred             H-HcCCCEEEecCC----CCCCHHHHHHHHHHHHHhCCEEEEEcCCcccchH-----------------------HH-H-
Confidence            7 578888887643    3468999999999999999999999875322100                       00 1 


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCHHH---HHHHHHHHHcCC
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMSMDA---MEEIAKARKAGP  308 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~~~~---~~~i~~~~~~Gi  308 (331)
                           .++...|.++|+.|++....   .+.++++++.|+
T Consensus       261 -----~la~~~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv  295 (569)
T 1e9y_B          261 -----TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNI  295 (569)
T ss_dssp             -----HHHHHTTCCEEETTTTSTTSCSTTTGGGGGGSTTE
T ss_pred             -----HHHHHcCCCEEEEEcccCcccccHHHHHHHHHcCC
Confidence                 12234678999999987543   578899999886

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9

Probab=99.89  E-value=1.5e-22  Score=192.97  Aligned_cols=254  Identities=16%  Similarity=0.110  Sum_probs=150.5

Q ss_pred             cEEEECcEEEeCCC---------------ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeeccccccccccc
Q 020079           54 KILIKGGTVVNAHH---------------QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLA  115 (331)
Q Consensus        54 ~~~i~n~~i~~~~~---------------~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~  115 (331)
                      .++|.+++|+++..               .++++|+|+||||++||+....   .++.++||++|++|+|||||+|+|+.
T Consensus         4 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~Hl~   83 (475)
T 2ood_A            4 TTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLP   83 (475)
T ss_dssp             CEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEEECEEEEEEEGG
T ss_pred             cceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhccccCCCeEEeCCCcEEecceecCcccHH
Confidence            36788999998643               3578999999999999975321   13468999999999999999999986


Q ss_pred             CCCC----CCC-----------------ChhhH----HHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceee
Q 020079          116 MEFM----GSE-----------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD  170 (331)
Q Consensus       116 ~~~~----~~~-----------------~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (331)
                      +...    +..                 +++++    ....+.++++||||++|+............+..++.+.+....
T Consensus        84 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~g  163 (475)
T 2ood_A           84 QTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRVIAG  163 (475)
T ss_dssp             GTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred             hHhhcCCCCCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeEEEE
Confidence            5421    110                 23333    3346678999999999975432212223334444444443221


Q ss_pred             ccccc---c--ccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcC-CchhhH
Q 020079          171 YGFHM---A--ITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAE-NGDAVF  242 (331)
Q Consensus       171 ~~~~~---~--~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e-~~~~~~  242 (331)
                      .....   +  .....++.++++.++.++ .+...++..+.++..+.++++.++++++.|+++ |+++++|+. +..+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~~g~~v~~H~~e~~~~~~  243 (475)
T 2ood_A          164 LTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECS  243 (475)
T ss_dssp             CEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEEEECSCCHHHHH
T ss_pred             eeecccCCCcccccCHHHHHHHHHHHHHHhccCCceEEEEeccccCcCCHHHHHHHHHHHHhCCCCcEEEeeCCChHHHH
Confidence            11110   0  111122344555555533 244567777788777888999999999999999 999999984 555444


Q ss_pred             HHH----------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHH-----HHHHHHHHHHcC
Q 020079          243 EGQ----------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD-----AMEEIAKARKAG  307 (331)
Q Consensus       243 ~~~----------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~-----~~~~i~~~~~~G  307 (331)
                      ...          +.+.+.|+.+.+....+.....+     +.++++++.|+.  +.+|+...     ....++++.+.|
T Consensus       244 ~~~~~~g~~~~~~~~~~~~g~~~~~~~i~H~~~~~~-----~~i~~~~~~g~~--~~~~P~~~~~l~~~~~~~~~~~~~G  316 (475)
T 2ood_A          244 GVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSN-----NEFRRMSKKGAA--VVFCPCSNLFLGSGLFRLGRATDPE  316 (475)
T ss_dssp             HHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCH-----HHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHTCTT
T ss_pred             HHHHHcCCCccHHHHHHHcCCCCCCcEEEEeecCCH-----HHHHHHHHcCCE--EEEChhhhhhcccCcCCHHHHHhCC
Confidence            432          22444555444321111111111     234445555543  44443211     122456677777


Q ss_pred             CC--EEEec
Q 020079          308 PN--FLNTT  314 (331)
Q Consensus       308 i~--v~~~~  314 (331)
                      ++  ++.++
T Consensus       317 v~~~~~lgT  325 (475)
T 2ood_A          317 HRVKMSFGT  325 (475)
T ss_dssp             SCCEEEECC
T ss_pred             CCCcEEEEc
Confidence            77  66543

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*

Probab=99.89  E-value=2.5e-21  Score=180.66  Aligned_cols=218  Identities=16%  Similarity=0.112  Sum_probs=138.8

Q ss_pred             CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC------C
Q 020079           51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------E  122 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~------~  122 (331)
                      |+.+++|+|++|++++.  ...++|+|+||||++|++. . +++.++||++|++|+|||||+|+|+. .....      .
T Consensus         4 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~g~I~~ig~~-~-~~~~~viD~~g~~v~PGlID~H~H~~-~~~~~~~~~~~~   80 (408)
T 3be7_A            4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI-N-TKDATVISIPDLILIPGLMDSHVHIV-GNDSKGEESIAD   80 (408)
T ss_dssp             -CCCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECC-C-CSSSEEEEEEEEEEEECEEEEEECCS-SCCCCSGGGTTC
T ss_pred             ccceEEEEeeEEEeCCCCceeeeEEEEECCEEEEEeCC-C-CCCCeEEECCCCEECcCceeeeEccc-CCCCcchhhhcC
Confidence            45679999999999765  3348999999999999986 2 34568999999999999999999998 32111      1


Q ss_pred             ChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc----cceee------cccccccc----------
Q 020079          123 TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMD------YGFHMAIT----------  178 (331)
Q Consensus       123 ~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~----------  178 (331)
                      +++...    ...+.++++||||++|+.....  ....++...+.+.    +....      ...+....          
T Consensus        81 ~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~  158 (408)
T 3be7_A           81 SSHMGTVWGVVNAEKTLMAGFTTVRNVGAANY--ADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSS  158 (408)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTEEEEEECCCSTT--HHHHHHHHHHTTSSCCCEEEECCSCBBCTTSTTSCCCSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCEEEeCCCccc--cCHHHHHHHHCCCCCCCEEEEccceeeccCCCCccccccccccccC
Confidence            223221    2467789999999999864322  2223333333322    11110      00111000          


Q ss_pred             ----CCChhhHHHHHHHHHHhCCCeEEEEEecC--------CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHH
Q 020079          179 ----KWDEVVSDEMEVMVKEKGINSFKFFMAYK--------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQK  246 (331)
Q Consensus       179 ----~~~~~~~~~~~~~~~~~g~~~ik~~~~~~--------~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~  246 (331)
                          ...++..+.+++.. +.|.+.+|.+.+..        +...++++.++++++.|+++|+++.+|+.+...+..   
T Consensus       159 ~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~i~~---  234 (408)
T 3be7_A          159 EGVVDSPWEARKMVRKNR-KYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKA---  234 (408)
T ss_dssp             TTBCCSHHHHHHHHHHHH-HTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHH---
T ss_pred             CcccCCHHHHHHHHHHHH-hcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---
Confidence                01112222233333 46888899885431        135678999999999999999999999875433211   


Q ss_pred             HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEE
Q 020079          247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL  311 (331)
Q Consensus       247 ~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~  311 (331)
                                                      +.+.|.. .+.|+..... +.+++++++|+.+.
T Consensus       235 --------------------------------~~~~g~~-~i~H~~~~~~-~~i~~~~~~g~~v~  265 (408)
T 3be7_A          235 --------------------------------AIKAGVD-SVEHASFIDD-ETIDMAIKNNTVLS  265 (408)
T ss_dssp             --------------------------------HHHHTCS-EEEECTTCCH-HHHHHHHHTTCEEE
T ss_pred             --------------------------------HHHcCCC-EEEECCCCCH-HHHHHHHHCCCEEe
Confidence                                            1123444 5888876543 77888888997665

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18

Probab=99.88  E-value=6.7e-21  Score=178.42  Aligned_cols=184  Identities=15%  Similarity=0.173  Sum_probs=120.7

Q ss_pred             CccEEEECcEEEeCCC--c-eeeeEEEeCCEEEEeeCCCCCCCCc--eEEeCCCCeeecccccccccccCCCCCC-----
Q 020079           52 SSKILIKGGTVVNAHH--Q-QIADVYVEDGIVVAVQPNINVGDDV--KVLDATGKFVMPGGIDPHTHLAMEFMGS-----  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~--~-~~~~v~i~~g~I~~ig~~~~~~~~~--~~id~~g~~v~PG~ID~H~H~~~~~~~~-----  121 (331)
                      .++++|+|++|++++.  . .+++|+|+||+|++|++.. .+++.  ++||++|++|+|||||+|+|+..+....     
T Consensus         6 ~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~-~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~   84 (418)
T 2qs8_A            6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPI   84 (418)
T ss_dssp             -CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESC-CCCTTSSEEEEEEEEEEEECEEEEEECTTCCCCCTTTSCS
T ss_pred             CccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCCC-CCCCCcceEEECCCCEECCCeeeeeeccccCCCCCchhhh
Confidence            3568999999999875  2 5789999999999999864 23456  8999999999999999999998752110     


Q ss_pred             -CChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc----cceeec------ccccc----------
Q 020079          122 -ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDY------GFHMA----------  176 (331)
Q Consensus       122 -~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~----------  176 (331)
                       .+++....    ..+.++++||||++|+.....  ....++...+.+.    +.....      +.+..          
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~g~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~  162 (418)
T 2qs8_A           85 KVEREMQAILATQHAYVTFKSGFTTVRQVGDSGL--VAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDY  162 (418)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSSS--HHHHHHHHHHTTSSCCCEEEECCSCBEETTCTTCTTTTCCGGGC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcc--ccHHHHHHHHCCCCCCCeEEecCccccccCCCcccccccccccc
Confidence             23343322    567789999999999854321  2223333333332    211100      00100          


Q ss_pred             --------ccCCChhhHHHHHHHHHHhCCCeEEEEEecC--------CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch
Q 020079          177 --------ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK--------GSFMINDELLIEGFKRCKSLGALAMVHAENGD  239 (331)
Q Consensus       177 --------~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~--------~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~  239 (331)
                              .....++..+.+++.. +.|.+.+|++.+..        +...++++.++++++.|+++|+++.+|+++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~  240 (418)
T 2qs8_A          163 DYPVPEQGVVNGPYEVYAAVRQRY-KDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAE  240 (418)
T ss_dssp             CCCCGGGTEECSHHHHHHHHHHHH-HHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             ccccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence                    0001112223333333 46888999986431        23567899999999999999999999997544

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14

Probab=99.88  E-value=2.7e-22  Score=185.26  Aligned_cols=177  Identities=16%  Similarity=0.124  Sum_probs=117.5

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCC-CeeecccccccccccCCCCCCCChhhHHHH
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSG  130 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g-~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~  130 (331)
                      +++++|+|++|++++   +++|+|+||||++|++... +++.++||++| ++|+|||||+|+|+..+  +....+   ..
T Consensus         4 ~~~~~i~~~~v~~~~---~~~v~i~~g~I~~ig~~~~-~~~~~~iD~~g~~~v~PG~ID~H~H~~~~--~~~~~~---~~   74 (379)
T 2ics_A            4 DYDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATIS-GSAKETIHLEPGTYVSAGWIDDHVHCFEK--MALYYD---YP   74 (379)
T ss_dssp             CEEEEEEEEECTTSC---EEEEEEETTEEEEEESCCC-CCEEEEEECCTTCEEEECEEEEEECCCTT--SSSSCC---CH
T ss_pred             cccEEEECCEEEcCC---cceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEEccCEEEeccccCcc--CccccC---ch
Confidence            357899999999864   7899999999999998542 23458999999 99999999999999875  222222   22


Q ss_pred             HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc--cceeecccccccc--CC---ChhhHHHHHHHHHH--hCCCeEE
Q 020079          131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDYGFHMAIT--KW---DEVVSDEMEVMVKE--KGINSFK  201 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~--~g~~~ik  201 (331)
                      .+.++++||||++|+......+.....+...+...  ...+++...+...  ..   .+...++++++.++  .++.++|
T Consensus        75 ~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  154 (379)
T 2ics_A           75 DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIK  154 (379)
T ss_dssp             HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTSSGGGCCHHHHHHHHHHCTTTEEEEE
T ss_pred             hhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccccCCCCHHHHHHHHHHHHHHHHHHHHhhhCcceEEE
Confidence            46789999999999864323233333332222221  1222222111111  01   11224566666643  3667788


Q ss_pred             EEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCC
Q 020079          202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAEN  237 (331)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~  237 (331)
                      .+..+.....++.+.++++++.|++ +|+++.+|++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~  191 (379)
T 2ics_A          155 ARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGS  191 (379)
T ss_dssp             EEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECS
T ss_pred             EeccccccccchHHHHHHHHHHHHHhcCCeEEEeCCC
Confidence            8776533334677889999999999 99999999854

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}

Probab=99.87  E-value=1.6e-21  Score=183.47  Aligned_cols=185  Identities=16%  Similarity=0.073  Sum_probs=122.4

Q ss_pred             EEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCCCCC--------
Q 020079           55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE--------  122 (331)
Q Consensus        55 ~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~--------  122 (331)
                      ++|+|++|++++. .++++|+| ||+|++||+..+.   .++.++||++|++|+|||||+|+|+.++.....        
T Consensus         2 ~~i~~~~v~~~~~~~~~~~v~i-~g~I~~Vg~~~~~~~~~~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~~~l~~   80 (427)
T 3v7p_A            2 RIIKPFAILTPQTIIQDKAVAF-DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIP   80 (427)
T ss_dssp             EEEEEEEEECSSSEEESCEEEE-SSBEEEEECHHHHHHHCTTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCCSSHHH
T ss_pred             EEEECCEEEcCCCEEeCcEEEE-CCEEEEecChhhhccccCCceEEeCCCCEEecCEeecccCcchhhcccccccCCHHH
Confidence            6899999999876 46899999 9999999985432   135689999999999999999999986532110        


Q ss_pred             ------------ChhhH----HHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHH
Q 020079          123 ------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD  186 (331)
Q Consensus       123 ------------~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (331)
                                  ++++.    ..+...++++||||+.|+..... .    ++...+.+.+................+..+
T Consensus        81 wl~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~-~----~~a~~~~Gir~~~~~~~~~~~~~~~~~~~~  155 (427)
T 3v7p_A           81 WLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAISSYGE-D----LQACIDSALKVVYFNEVIGSNAATADVMYA  155 (427)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTEEEEEEEESSST-T----HHHHHHBSSEEEEEEEECBCCGGGHHHHHH
T ss_pred             HHHHHHHhHHhcCHHHHHHHHHHHHHHHHHhCCEEEEEecCcHH-H----HHHHHhcCCeEEEeccccCCChhhhhHHHH
Confidence                        01111    22334578899999999865432 1    344444444433222111110101111222


Q ss_pred             HHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH
Q 020079          187 EMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ  245 (331)
Q Consensus       187 ~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~  245 (331)
                      +..+..+.   .+...++..+++++++.++++.++++++.|+++|+++++|+ |+..+.+...
T Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~  218 (427)
T 3v7p_A          156 SFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLD  218 (427)
T ss_dssp             HHHHHHHHHHTTCBTTEEEEEEECCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHH
Confidence            22222211   23456788888999999999999999999999999999995 7776665543

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16

Probab=99.87  E-value=1.4e-21  Score=183.35  Aligned_cols=186  Identities=13%  Similarity=0.085  Sum_probs=118.3

Q ss_pred             CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC------
Q 020079           51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM------  119 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~------  119 (331)
                      .|.+++|+|++|++++.  ..+++|+|+||||++|++....   .++.++||++ ++|+|||||+|+|+..+..      
T Consensus        35 ~~~~~li~n~~v~~~~~~~~~~~~V~I~~g~I~~vg~~~~~~~~~~~~~viD~~-~~v~PGlID~H~H~~~~~~~g~~~~  113 (420)
T 2imr_A           35 AHTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG-AVIAPPPVNAHTHLDMSAYEFQALP  113 (420)
T ss_dssp             -CCEEEEEESEEECC---EESSEEEEEETTEEEEEECHHHHHHHCTTCEEEECC-SEESSCCCEEEEESSCCHHHHHHCH
T ss_pred             ccccEEEECCEEEeCCCCeeeccEEEEECCEEEEecCcccccccCCCCeeecCC-eEECCCCEecCcCcchhhhhhccCC
Confidence            35679999999999874  4678999999999999975321   1346899999 9999999999999976410      


Q ss_pred             --CC-----------CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHH-HHHHhccceeeccccccccCCChhhH
Q 020079          120 --GS-----------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA-YEKKAKNSCMDYGFHMAITKWDEVVS  185 (331)
Q Consensus       120 --~~-----------~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (331)
                        ..           .++.......+.++++||||++|+...     .+.++. ..+.+.+....+.+.........+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~  188 (420)
T 2imr_A          114 YFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWA-----PEVMDALLAREDLSGTLYFEVLNPFPDKADEVF  188 (420)
T ss_dssp             HHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECS-----HHHHHHHHTCTTCCEEEEEEECBCCGGGHHHHH
T ss_pred             HHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCcEEEEEccCC-----HHHHHHHHHhcCcEEEEEeeecCCCchhhHHHH
Confidence              00           001222445677899999999998632     122321 22222232222211110000001122


Q ss_pred             HHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhH
Q 020079          186 DEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVF  242 (331)
Q Consensus       186 ~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~  242 (331)
                      ++..+++++   .+...+++++.++....++++.++++++.|+++|+++++|+ ++..+.+
T Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~  249 (420)
T 2imr_A          189 AAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELE  249 (420)
T ss_dssp             HHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHH
T ss_pred             HHHHHHHHHHhcccCCceEEEecCCcCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence            333333322   23456788888877777899999999999999999999998 5544443

>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}

Probab=99.87  E-value=4.2e-22  Score=181.83  Aligned_cols=185  Identities=16%  Similarity=0.107  Sum_probs=137.7

Q ss_pred             CCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ce-eeccccc
Q 020079           99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SC-MDYGFHM  175 (331)
Q Consensus        99 ~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~  175 (331)
                      .|++++||+||.|+|+..   |.     ......+++++|+|+++||.+..+. ...+.++.+++.... .. +++.+++
T Consensus        22 ~~~~vlPG~ID~HvHlre---G~-----~~~e~~aA~aGG~Ttvi~mPnt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~   93 (359)
T 3pnu_A           22 SNAMKLKNPLDMHLHLRD---NQ-----MLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACKDENFTPLM   93 (359)
T ss_dssp             SCCEEEESCEEEEECCCS---HH-----HHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CCcEEccCcEEccccCCC---CC-----cchhHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHHhccCCCceEEEee
Confidence            589999999999999976   21     2333457888999999999865554 456666665554433 44 7777776


Q ss_pred             c--ccCCChhhHHHHHHHHHHhCCCeEEEEEecC------CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHH
Q 020079          176 A--ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR  247 (331)
Q Consensus       176 ~--~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~------~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~  247 (331)
                      .  .+..   ..+++.++. +. +.++|.|+.+.      +....+.+.+.++++.+++.|.++.+|+|+.+.+.     
T Consensus        94 ~l~lt~~---~~~el~~l~-~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~-----  163 (359)
T 3pnu_A           94 TLFFKNY---DEKFLYSAK-DE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVM-----  163 (359)
T ss_dssp             EEECSCC---CHHHHHHHT-TT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGG-----
T ss_pred             eeEecCC---CHHHHHHHH-Hh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhH-----
Confidence            6  5522   245666665 44 77889887541      12233889999999999999999999999876421     


Q ss_pred             HHHcCCCCcccccccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       248 ~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                                        ..|..++.+.+.+++++ |.++|++|+|+.++++.++++    .+|++++||||+.++.
T Consensus       164 ------------------~~E~~ai~r~~~la~~~~g~~lhi~HvSt~~~v~~I~~A----~~VtaEv~phhL~lt~  218 (359)
T 3pnu_A          164 ------------------DRESNFAKIYEKLAKHFPRLKIVMEHITTKTLCELLKDY----ENLYATITLHHLIITL  218 (359)
T ss_dssp             ------------------GTTGGGHHHHHHHHHHCTTSCEEECSCCSHHHHHHHHHC----TTEEEEECSGGGTCCH
T ss_pred             ------------------HHHHHHHHHHHHHHHHcCCCcEEEEecCcHHHHHHHHhc----CCceEEEechhhEEcH
Confidence                              12345677788888865 999999999999998988887    7999999999998764

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17

Probab=99.87  E-value=1.5e-20  Score=178.15  Aligned_cols=184  Identities=18%  Similarity=0.162  Sum_probs=117.9

Q ss_pred             ccEEEECcEEEeCCC---ceeeeEEE-eCCEEEEeeC--CCCCCCCceEEeCCCCeeecccccccccccCCCCCCC----
Q 020079           53 SKILIKGGTVVNAHH---QQIADVYV-EDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE----  122 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~---~~~~~v~i-~~g~I~~ig~--~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~----  122 (331)
                      .+++|+|++|++++.   ..+++|+| +||||++||+  ....+++.++||++|++|+|||||+|+|+..+.....    
T Consensus        13 ~~~li~n~~i~~~~~~~~~~~~~v~I~~~g~I~~Vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~   92 (458)
T 2p9b_A           13 PFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPLNPKLA   92 (458)
T ss_dssp             CEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEEECEEEEEECSCC----------
T ss_pred             CcEEEEeeEEEeCCCCccccCcEEEEecCCEEEEEeccccCCCCCCCeEEECCCCEEccceeeeeecccccccccccccc
Confidence            568999999999764   24689999 9999999997  4332345689999999999999999999987631100    


Q ss_pred             -----------Ch---------hhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc----cceeecc---ccc
Q 020079          123 -----------TI---------DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDYG---FHM  175 (331)
Q Consensus       123 -----------~~---------~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~  175 (331)
                                 ..         ..+....+.++++||||++|+.....  ....++...+.+.    +......   ...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~g~~~g~r~~~~g~~~~~~g  170 (458)
T 2p9b_A           93 TPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGY--EVVTLRDQIDAGQILGPRILASGPLMAIPE  170 (458)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSS--HHHHHHHHHHTTSSCCCEEECCCSCEECCC
T ss_pred             chhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCcc--ccHHHHHHHHcCCCCCCeEEecccccccCC
Confidence                       11         12344667789999999999864322  2223333333322    1111000   000


Q ss_pred             ccc--------CCChhhHHHHHHHHHHhCCCeEEEEEec-----C-----CCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          176 AIT--------KWDEVVSDEMEVMVKEKGINSFKFFMAY-----K-----GSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       176 ~~~--------~~~~~~~~~~~~~~~~~g~~~ik~~~~~-----~-----~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ...        ...++..+.++++. +.|.+.+|++...     .     +.+.++++.++++++.|+++|+++.+|+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  249 (458)
T 2p9b_A          171 GHGAPLIALTSGTPEEARTAVAQNL-KAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQS  249 (458)
T ss_dssp             SSCCCCEECCSCCHHHHHHHHHHHH-HTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCccccCccCCCHHHHHHHHHHHH-HcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            000        11122233444444 5688889988642     1     234678899999999999999999999976


Q ss_pred             ch
Q 020079          238 GD  239 (331)
Q Consensus       238 ~~  239 (331)
                      ..
T Consensus       250 ~~  251 (458)
T 2p9b_A          250 PE  251 (458)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri}

Probab=99.87  E-value=1.9e-20  Score=173.37  Aligned_cols=244  Identities=18%  Similarity=0.108  Sum_probs=148.7

Q ss_pred             ccEEEECcEE-EeCCC----ceeeeEEEeCCEEEEeeCCCC-CCCC-ceEEeCCCCeeecccccccccccCCCCCCCCh-
Q 020079           53 SKILIKGGTV-VNAHH----QQIADVYVEDGIVVAVQPNIN-VGDD-VKVLDATGKFVMPGGIDPHTHLAMEFMGSETI-  124 (331)
Q Consensus        53 ~~~~i~n~~i-~~~~~----~~~~~v~i~~g~I~~ig~~~~-~~~~-~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~-  124 (331)
                      .+++|+|++| ++++.    ..+++|+|+||+|++|++... .+++ .++||++|++|+|||||+|+|+..+  +.. + 
T Consensus         2 ~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~-~~   78 (386)
T 2vun_A            2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHVSGG--DYA-PR   78 (386)
T ss_dssp             CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGTTCTTCEEEECTTCEEEECEEEEEECCCST--TEE-GG
T ss_pred             ccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccCCCCCceEEcCCCCEEccceeeccccccCC--CcC-hh
Confidence            5689999999 98764    357899999999999997322 1234 5899999999999999999999753  211 1 


Q ss_pred             hhHHHHHHHHHhCCceEEecCcCC---CCCcHHHHHH---HHHH---Hhccceeecccccc---ccCCChhhHHHHHHHH
Q 020079          125 DDFFSGQAAALAGGTTMHIDFVIP---INGSLTAGFE---AYEK---KAKNSCMDYGFHMA---ITKWDEVVSDEMEVMV  192 (331)
Q Consensus       125 ~~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  192 (331)
                      .......+.++++||||++|+.+.   ......+.++   ....   .+.+.. ...+..+   .....  ..++++++.
T Consensus        79 ~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~--~~~~~~~~~  155 (386)
T 2vun_A           79 QKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNARPA-GVKVHGGAVILEKGL--TEEDFIEMK  155 (386)
T ss_dssp             GTEESHHHHHHTTTEEEEEECCCTTSTTCCCSHHHHHHHHHHHHHHHHHCCGG-GCEEECCEECCCTTC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCceEEEeccccccCCChhhHHHHHHHHHHhhccccccccc-ceeeccCcccccCCc--CHHHHHHHH
Confidence            011125788899999999998631   1111111222   1111   111100 0001111   11111  135677776


Q ss_pred             HHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC-------CchhhHHHHHHHHHcCCCCcccccccCCh
Q 020079          193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-------NGDAVFEGQKRMIELGITGPEGHALSRPP  265 (331)
Q Consensus       193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e-------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~  265 (331)
                       +.|...+|.+...   ..++++.++++++.|+++|+++.+|++       +.+.+.    .+.+.|... -.|+...+.
T Consensus       156 -~~g~~~ik~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~i~----~~~~~G~~~-i~H~~~~~~  226 (386)
T 2vun_A          156 -KEGVWIVGEVGLG---TIKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPGSSTVTAD----DVIKTKPDV-VSHINGGPT  226 (386)
T ss_dssp             -HTTCCEEEEETSS---SCCSHHHHHHHHHHHHHTTCEEEEECSCCSCSTTCSCCHH----HHHHHCCSE-EETTTCSSS
T ss_pred             -HhCCCeEEEeecC---CCCCHHHHHHHHHHHHHCCCeEEEecCCccccccCHHHHH----HHHHcCCCE-EEEccCCCC
Confidence             5788889886422   235899999999999999999999984       333332    233456542 233322110


Q ss_pred             HHHHHHHHHHHHHHHhcCCCE-EEEeCC-CHHHHHHHHHHHHcCC--CEEEecC
Q 020079          266 LLEGEATTRAIRLAEFVNTPL-YVVHVM-SMDAMEEIAKARKAGP--NFLNTTI  315 (331)
Q Consensus       266 ~~e~~~i~~~~~l~~~~g~~~-~i~H~~-~~~~~~~i~~~~~~Gi--~v~~~~~  315 (331)
                      ...    .+.++.+.+.|+.+ .+.+.. .....+.++++.+.|+  ++..+|.
T Consensus       227 ~~~----~~~~~~~~~~g~~vl~~~~~g~~~~~~~~~~~~~~~g~~d~v~lgTD  276 (386)
T 2vun_A          227 AIS----VQEVDRIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGND  276 (386)
T ss_dssp             CCC----HHHHHHHHHHCCCEEEEESSSCHHHHHHHHHHHHHHTCGGGEEEECC
T ss_pred             CCC----HHHHHHHHHcCCeEEEeccCCcccccHHHHHHHHHcCCCceeEEecC
Confidence            011    12345555668776 333333 3445678899999999  8876654

>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens}

Probab=99.86  E-value=3.1e-22  Score=187.56  Aligned_cols=257  Identities=18%  Similarity=0.122  Sum_probs=147.1

Q ss_pred             CCccEEEECcEEEeCCC---ceeeeEEEe-CCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhh
Q 020079           51 SSSKILIKGGTVVNAHH---QQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD  126 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~---~~~~~v~i~-~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~  126 (331)
                      |+.+++|+|++|++++.   ..+++|+|+ ||||++|++....+++.++||++|++|+|||||+|+|+..+..  ...+.
T Consensus        13 ~~~~~li~n~~vv~~~~~~~~~~~~v~I~~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~--~~~~~   90 (417)
T 2ogj_A           13 LQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGT--DISIR   90 (417)
T ss_dssp             -CCCEEEEEEEECSSCTTCCCSCEEEEECTTSBEEEEETTCCCSSCEEECCC--CEEEECEEEEEECCCBTTB--SSCCC
T ss_pred             CCCcEEEECCEEEcCCCCccCccceEEEecCCEEEEeccCCCCCCCCeEEECCCCEEccCeeecccccccccc--ccCCC
Confidence            44679999999998764   368899999 9999999985433334689999999999999999999987621  11111


Q ss_pred             HHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc---cceeecccccccc-----CC---ChhhHHHHHHHHHHh
Q 020079          127 FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK---NSCMDYGFHMAIT-----KW---DEVVSDEMEVMVKEK  195 (331)
Q Consensus       127 ~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~  195 (331)
                         ..+.++++||||++|+....+.......+...+...   +..+++...+...     ..   .....++++++.++.
T Consensus        91 ---~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~~~~~~~~  167 (417)
T 2ogj_A           91 ---PSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAEN  167 (417)
T ss_dssp             ---GGGTSGGGTEEEEEEESSCCSTTHHHHHHHTTTTCSSEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHHHHHHHTC
T ss_pred             ---HHHHHHhCCcCeEEeCCcCCCcCHHHHHHHHhhccccCeEEEeccccCcCCCCCCcccccchhhcCHHHHHHHHHhC
Confidence               123578999999999864433222222221222211   1222221111000     00   011234555555332


Q ss_pred             --CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC-chhhHHHHHHHHHcCCCCccccccc-CCh--HHHH
Q 020079          196 --GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALS-RPP--LLEG  269 (331)
Q Consensus       196 --g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~-~~~~~~~~~~~~~~G~~~~~~~~~~-~~~--~~e~  269 (331)
                        +...+|.++++.....++.+.++++++.|+++|+++.+|+++ ....+..... .+.|  ....|+.. .+.  ..+.
T Consensus       168 ~~~~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~-l~~g--~~~~H~~~~~~~~~~~~~  244 (417)
T 2ogj_A          168 SEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEI-LGPG--DVVTHCFNGKSGSSIMED  244 (417)
T ss_dssp             TTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHHHTCCEEEEECSSSSCHHHHHHH-CCTT--CEEETTTCCCTTTCTTSC
T ss_pred             CCceEEEEEEecCCccccccHHHHHHHHHHHHHcCCcEEEEcCCCcccHHHHHHH-hcCC--CEEEeccCCCccchhccC
Confidence              345678877654334467788899999999999999999864 3222222221 1223  11122211 110  0011


Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcC-CCEEEecC
Q 020079          270 EATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG-PNFLNTTI  315 (331)
Q Consensus       270 ~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~G-i~v~~~~~  315 (331)
                      ....+.+..+.+.|+.+.+++.........++.+.++| +++..++.
T Consensus       245 ~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~G~~~~~lgtD  291 (417)
T 2ogj_A          245 EDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTD  291 (417)
T ss_dssp             HHHHHHHHHC--CCCEEECCBCSSSCCHHHHHHHHHTTCCCSBCCBC
T ss_pred             HHHHHHHHHHHhcCcEEEecCCCccccchHHHHHHHcCCCceEEEcC
Confidence            11334455556677766666654434457788899999 87665443

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*

Probab=99.86  E-value=3.6e-21  Score=184.12  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=129.9

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|+++.+...++|+|+||||++|++....            .++.++||++|++|+|||||+|+|+..+  
T Consensus        66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P--  143 (570)
T 4ubp_C           66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP--  143 (570)
T ss_dssp             BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred             CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCCCCc--
Confidence            46899999999998777889999999999999985321            2356899999999999999999999766  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCC-------CC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +.         .+.++++||||+++.+...       +. .....++...+.....++++.++.....   ..++++.++
T Consensus       144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el  211 (570)
T 4ubp_C          144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ  211 (570)
T ss_dssp             TH---------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred             ch---------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence            21         3678999999999643211       11 2344555555555566777777654322   245677777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                      . +.|+.++|.+..+    ..+++.++++++.|+++|+++.+|+++..+
T Consensus       212 ~-~aGa~gfK~~~~~----~~~~~~L~~aL~~A~~~g~~V~iHae~l~e  255 (570)
T 4ubp_C          212 I-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLNE  255 (570)
T ss_dssp             H-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCS
T ss_pred             H-HcCCCeEeeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCcch
Confidence            7 7899999988654    358999999999999999999999986544

>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C*

Probab=99.86  E-value=3.6e-21  Score=184.12  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=129.9

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|+|++|+++.+...++|+|+||||++|++....            .++.++||++|++|+|||||+|+|+..+  
T Consensus        66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P--  143 (570)
T 4ac7_C           66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP--  143 (570)
T ss_dssp             BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred             CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccccCCc--
Confidence            46899999999998777889999999999999985321            2356899999999999999999999766  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCC-------CC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                      +.         .+.++++||||+++.+...       +. .....++...+.....++++.++.....   ..++++.++
T Consensus       144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el  211 (570)
T 4ac7_C          144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ  211 (570)
T ss_dssp             TH---------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred             ch---------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence            21         3678999999999643211       11 2344555555555566777777654322   245677777


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                      . +.|+.++|.+..+    ..+++.++++++.|+++|+++.+|+++..+
T Consensus       212 ~-~aGa~gfK~~~~~----~~~~~~L~~aL~~A~~~g~~V~iHae~l~e  255 (570)
T 4ac7_C          212 I-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLNE  255 (570)
T ss_dssp             H-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCS
T ss_pred             H-HcCCCeEeeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCcch
Confidence            7 7899999988654    358999999999999999999999986544

>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus}

Probab=99.84  E-value=5.2e-21  Score=181.36  Aligned_cols=251  Identities=12%  Similarity=0.014  Sum_probs=153.5

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-C----------
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----------  120 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~----------  120 (331)
                      |.+++++|+.+.+ ...++++|+|+||||++||+...    .++||++|++|+|||||+|+|+.+... +          
T Consensus        11 m~~l~~~~~~~~~-~~~~~~~v~I~~g~I~~Ig~~~~----~~~iD~~g~~v~PGlID~H~H~~~~~~rg~~~~~~~~~~   85 (458)
T 4f0l_A           11 QHFIHARQALLPD-GWAENVRIGIAGGVICSIETGVL----AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSAD   85 (458)
T ss_dssp             CEEEEEEEEEETT-EEEEEEEEEEETTEEEEEECSCC----CCTTCEEEEEEEECEEEEEECGGGGGGTTSSCBCCSCSS
T ss_pred             hhHhhhcceeccC-ccccCceEEEECCEEEEEeCCCc----cccccCCCCEEccCceecccchhhhhhcccccccccCCC
Confidence            3467788887632 22578999999999999998653    356999999999999999999964421 0          


Q ss_pred             --------------CCChhhHHHH----HHHHHhCCceEEecCcCCCC-------Cc----HHHHHHHHHHHhccceeec
Q 020079          121 --------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN-------GS----LTAGFEAYEKKAKNSCMDY  171 (331)
Q Consensus       121 --------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~  171 (331)
                                    ..++++++..    ...++++||||+.|+.....       ..    ....++...+.+.+..+..
T Consensus        86 ~~~~w~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~g~r~~~~~  165 (458)
T 4f0l_A           86 SFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLP  165 (458)
T ss_dssp             TTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHHHcCCeEEEec
Confidence                          0133444433    33468899999999743211       01    2234444555554433221


Q ss_pred             cccc--------c------ccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-
Q 020079          172 GFHM--------A------ITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-  235 (331)
Q Consensus       172 ~~~~--------~------~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-  235 (331)
                      .+..        +      .....++..+.++++.+. .+...+++.+.++..+.++++.++++++.|+  |+++++|+ 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~--g~~v~~H~~  243 (458)
T 4f0l_A          166 VFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDSVTQLLP--DAPVHIHVA  243 (458)
T ss_dssp             EECCEEETTTEECCGGGTTTCCCHHHHHHHHHHHHHHHTTCTTCEECBEECBTTTSCHHHHHHHTTSST--TSCEEEEES
T ss_pred             chhccccccccCCchhhhhhhcCHHHHHHHHHHHHHHhccCCceEEEEecCCcCcCCHHHHHHHHHHhc--CCCEEEEeC
Confidence            1100        0      011112233333343322 2334456666778888899999999999998  99999996 


Q ss_pred             CCchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHH
Q 020079          236 ENGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAK  302 (331)
Q Consensus       236 e~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~  302 (331)
                      |+..+.+...        +.+.+.|.++++....+.....     ++.++++.+.|+.  ++||+..     ..+..++.
T Consensus       244 e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~-----~~~~~~l~~~g~~--~~~~p~s~~~l~~~~~~~~~  316 (458)
T 4f0l_A          244 EQVKEVEDCIAWSGKRPVEWLLDHQDVTARWCLIHATHMS-----DEETKHMAKAGAI--AGLCPVTEANLGDGTFNATE  316 (458)
T ss_dssp             CSHHHHHHHHHHHSSCHHHHHHHHSCCCTTEEEEECCSCC-----HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHH
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEeccCC-----HHHHHHHHHcCCe--EEECccccccccCCCccHHH
Confidence            6766665554        3456778777654333322111     1234555666665  5555432     22346888


Q ss_pred             HHHcCCCEEEecCC
Q 020079          303 ARKAGPNFLNTTIP  316 (331)
Q Consensus       303 ~~~~Gi~v~~~~~p  316 (331)
                      +.++|++++.++..
T Consensus       317 ~~~~Gv~v~lgtD~  330 (458)
T 4f0l_A          317 FAAAGGKFGIGSDS  330 (458)
T ss_dssp             HHHTTCEEEECCBT
T ss_pred             HHHCCCeEEEECCC
Confidence            99999999987774

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A

Probab=99.84  E-value=4.1e-20  Score=180.38  Aligned_cols=244  Identities=17%  Similarity=0.144  Sum_probs=154.8

Q ss_pred             CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079           51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF  128 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~  128 (331)
                      ++++++|+|++|+++..  ...++|+|+||||++|++.....++.++||++|++|+|||||+|+|+..+   ..+++.+ 
T Consensus        33 ~~~dlli~n~~ivd~~~~~~~~~dI~I~~G~I~~Vg~~~~~~~~~~vID~~G~~v~PG~ID~H~Hl~~~---~~~~~~~-  108 (608)
T 3nqb_A           33 QRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHMHIESS---MITPAAY-  108 (608)
T ss_dssp             SCEEEEEESCEEECTTTCCEEECEEEEETTEEEEEECTTSCCCEEEEEECTTSEEEECEEEEEECGGGG---TSCHHHH-
T ss_pred             CCCCEEEECeEEEECCCCeEEeeEEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCeEecccCcccc---cCCHHHH-
Confidence            35689999999999763  56789999999999999865334467899999999999999999999765   2344444 


Q ss_pred             HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccc----cc---cC--CChhhHHHHHHHHHHhCCC
Q 020079          129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHM----AI---TK--WDEVVSDEMEVMVKEKGIN  198 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~--~~~~~~~~~~~~~~~~g~~  198 (331)
                        .+.++.+||||++++...... ...+.++...+.....+.++.+..    +.   ..  ......++++++.+..++.
T Consensus       109 --~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~~~v~  186 (608)
T 3nqb_A          109 --AAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIG  186 (608)
T ss_dssp             --HHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTSTTEE
T ss_pred             --HHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhccCcc
Confidence              678899999999975321111 123344444444433333332221    10   00  1112356777777446777


Q ss_pred             eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHH
Q 020079          199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRL  278 (331)
Q Consensus       199 ~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l  278 (331)
                      +++.++++.+. ..+++.+.+.++.|+++|+++.+|+++...  .....+.+.|...  .|.   +...     ++..+.
T Consensus       187 glgE~~~~~~v-~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~--~~L~~~~~aGv~~--~H~---~~~~-----eea~e~  253 (608)
T 3nqb_A          187 GIAEIMNMRGV-IERDPRMSGIVQAGLAAEKLVCGHARGLKN--ADLNAFMAAGVSS--DHE---LVSG-----EDLMAK  253 (608)
T ss_dssp             EEEEECCHHHH-HTTCHHHHHHHHHHHHHTCEEEECCTTCCH--HHHHHHHHTTCCE--ECC---CCSH-----HHHHHH
T ss_pred             eeeEeeccCCc-CCCcHHHHHHHHHHHHcCCEEEEcCCCCCH--HHHHHHHHcCCCe--eec---cCCH-----HHHHHH
Confidence            88877655322 235678889999999999999999865433  2234455667654  222   1111     222233


Q ss_pred             HHhcCCCEEEEeCCCHHHHHHHHHHH----HcCCCEEEecC
Q 020079          279 AEFVNTPLYVVHVMSMDAMEEIAKAR----KAGPNFLNTTI  315 (331)
Q Consensus       279 ~~~~g~~~~i~H~~~~~~~~~i~~~~----~~Gi~v~~~~~  315 (331)
                      ++ .|..+.+. .+.....+.+..+.    ..|.++..+|.
T Consensus       254 l~-~G~~i~i~-gs~~~~~~~l~~~i~~~~~~g~~v~lgTD  292 (608)
T 3nqb_A          254 LR-AGLTIELR-GSHDHLLPEFVAALNTLGHLPQTVTLCTD  292 (608)
T ss_dssp             HH-TTCEEEEE-SSSGGGHHHHHHHHHHHTSCCTTEEEECB
T ss_pred             HH-CCCEEEEe-ccccccHHHHHHHHHhHhhcCceEEEecC
Confidence            32 47777676 55544434443333    37899988776

>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*

Probab=99.83  E-value=7.2e-21  Score=173.99  Aligned_cols=192  Identities=15%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             CCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cce--eecccc
Q 020079           99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC--MDYGFH  174 (331)
Q Consensus        99 ~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~--~~~~~~  174 (331)
                      ++++|+||+||.|+|+...        ....+.+.++++||||++||.+..+. ...+.+..+.+... ...  +++...
T Consensus         4 ~~~~v~PG~ID~HvH~~~g--------~~~~e~~aa~~gGvTtvv~mpnt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (347)
T 2z26_A            4 SQVLKIRRPDDWHLHLRDG--------DMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPL   75 (347)
T ss_dssp             CCEEEEECCCEEEECCCSH--------HHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEE
T ss_pred             CCeEECCCcceeeecCCCC--------CchhhHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHhcccCCcccEEEE
Confidence            4679999999999999762        11234577899999999999754443 33444444444332 223  233222


Q ss_pred             ccccCCChhhHHHHHHHHHHhCC-CeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHH
Q 020079          175 MAITKWDEVVSDEMEVMVKEKGI-NSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI  249 (331)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~g~-~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~  249 (331)
                      +......+...+++..+. +.|+ .++|+|+.+.    +....+.+.+.++++.+++.|.++.+|+|+....        
T Consensus        76 ~~~~~~~~~~~~ei~~l~-~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~--------  146 (347)
T 2z26_A           76 MTCYLTDSLDPNELERGF-NEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD--------  146 (347)
T ss_dssp             EEEECCTTCCHHHHHHHH-HTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT--------
T ss_pred             EEEEeCCCCCHHHHHHHH-HCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc--------
Confidence            332112222367787777 6897 7999998753    2233577899999999999999999999876411        


Q ss_pred             HcCCCCcccccccCChHHHHHHHHHHH--HHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          250 ELGITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~--~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                          .        .+...|..++.+.+  .+++..|.++|++|+++.++++.++++|   .+|++++||||+.++
T Consensus       147 ----~--------~~~~~E~~~~~~~i~~~la~~~~~~~hi~Hvst~~~~~~i~~ak---~~Vt~e~~ph~L~l~  206 (347)
T 2z26_A          147 ----I--------DIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDGN---ERLAATITPQHLMFN  206 (347)
T ss_dssp             ----S--------CGGGHHHHHHHHTHHHHHHHSTTCCEEECSCCSHHHHHHHHTSC---TTEEEEECHHHHHCC
T ss_pred             ----c--------CHHHHHHHHHHHHHHHHHHhhcCCcEEEEECCcHHHHHHHHHhC---CCceEeecchHheec
Confidence                0        01123455677777  5788889999999999999988888775   589999999998764

>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*

Probab=99.82  E-value=5e-20  Score=174.45  Aligned_cols=245  Identities=11%  Similarity=0.027  Sum_probs=151.8

Q ss_pred             EECcEEEeCCC-ceeeeEEE-eCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC--------------
Q 020079           57 IKGGTVVNAHH-QQIADVYV-EDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--------------  120 (331)
Q Consensus        57 i~n~~i~~~~~-~~~~~v~i-~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~--------------  120 (331)
                      +...+++.+++ .++++|+| +||+|++|++....   .+++|++| +|+|||||+|+|+.+....              
T Consensus         4 ~~~~~~~~~~~~~~~~~v~i~~~g~I~~ig~~~~~---~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~~~~~~~l~   79 (453)
T 3mdu_A            4 IFAERALLPEGWARNVRFEISADGVLAEIRPDANA---DGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFW   79 (453)
T ss_dssp             EEEEEEEETTEEEEEEEEEECTTSBEEEEESSCCC---TTSEECSS-CEEECEEEEEECGGGGGGTTTTCCCSSTTCCHH
T ss_pred             cchhheecCCceecCeEEEEecCCEEEEecCCCCc---ccccccCC-cccccceecccchHHHhhccccccccCCCCcHH
Confidence            34556666665 57899999 89999999986542   24679999 9999999999999654211              


Q ss_pred             -----------CCChhhHHHHH----HHHHhCCceEEecCcCCCC-------C----cHHHHHHHHHHHhccceeecccc
Q 020079          121 -----------SETIDDFFSGQ----AAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYGFH  174 (331)
Q Consensus       121 -----------~~~~~~~~~~~----~~~l~~GvTtv~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~  174 (331)
                                 ..++++++..+    ..++++||||+.|+.....       .    .....++..++.+.+..+...+.
T Consensus        80 ~wl~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~  159 (453)
T 3mdu_A           80 TWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLY  159 (453)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEECBC
T ss_pred             HHHHHHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCCeEEEecchh
Confidence                       12445554443    3478899999999743211       0    12344555555565533221110


Q ss_pred             --ccc------------cCCChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-C
Q 020079          175 --MAI------------TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E  236 (331)
Q Consensus       175 --~~~------------~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e  236 (331)
                        .+.            ....++..+.++++.+   ..+.   +..+++++.+.++++.++++++.|+ .|+++++|+ |
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~e~l~~~~~~A~-~g~~v~~H~~e  235 (453)
T 3mdu_A          160 SHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGH---SLGLCFHSLRAVTPQQIATVLAAGH-DDLPVHIHIAE  235 (453)
T ss_dssp             CBSSTTTCBCCGGGGGGCCCHHHHHHHHHHHHHHHHHHTC---EECEEEEETTTSCHHHHHHHHTSSC-TTSCEEEEESC
T ss_pred             ccccccCCCCchhhhhccCCHHHHHHHHHHHHHHhhcCCC---eEEEecCCCCcCCHHHHHHHHHHHh-cCCCEEEEeCC
Confidence              000            0111223333333332   2232   4556777788899999999999999 999999995 7


Q ss_pred             CchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHH
Q 020079          237 NGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKA  303 (331)
Q Consensus       237 ~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~  303 (331)
                      +..++....        +.+.+.|.++++....+.....     ++.++++++.|+.  ++||+..     .....++.+
T Consensus       236 ~~~e~~~~~~~~g~~~v~~l~~~g~~~~~~~~~H~~~~~-----~~~i~~la~~g~~--v~~~P~sn~~lg~g~~p~~~~  308 (453)
T 3mdu_A          236 QQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHAD-----PAEVAAMARSGAV--AGLCLSTEANLGDGIFPATDF  308 (453)
T ss_dssp             SHHHHHHHHHHHSSCHHHHHHHHSCCCTTEEEEECCSCC-----HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHH
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEcCCCC-----HHHHHHHHHcCCE--EEECchhHhhcCCCCCCHHHH
Confidence            776666544        3467778777654333322221     1234566666765  5555432     234567888


Q ss_pred             HHcCCCEEEecCC
Q 020079          304 RKAGPNFLNTTIP  316 (331)
Q Consensus       304 ~~~Gi~v~~~~~p  316 (331)
                      .++|++|+.++..
T Consensus       309 ~~~Gv~v~lgtD~  321 (453)
T 3mdu_A          309 LAQGGRLGIGSDS  321 (453)
T ss_dssp             HHTTCEEEECCBT
T ss_pred             HHCCCEEEEECCC
Confidence            8999999887763

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}

Probab=99.82  E-value=3.8e-19  Score=165.33  Aligned_cols=192  Identities=14%  Similarity=0.134  Sum_probs=119.8

Q ss_pred             CccEEEECcEEEeCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEeCC-CCeeecccccccccccCCC-CCCCChhhHH
Q 020079           52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDAT-GKFVMPGGIDPHTHLAMEF-MGSETIDDFF  128 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~-~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~-g~~v~PG~ID~H~H~~~~~-~~~~~~~~~~  128 (331)
                      ..+++|+|++|++++.. .+++|+|+||+|++|++..+..++.++||++ |++|+|||||+|+|+..+. .+..++++++
T Consensus         2 ~~~~li~~~~v~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~   81 (396)
T 2vhl_A            2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFSTLD   81 (396)
T ss_dssp             -CCEEEEEEEEECSSCEEEEEEEEEETTEEEEEESSCCSSCCSEEEECCTTCEEEECEEEEEECEETTEEGGGCSHHHHH
T ss_pred             CccEEEEeeEEEcCCccccCceEEEECCEEEEEECCCCCCCCCceEcCCCCCEEcCCEEEEeecCCcCccccCCCHHHHH
Confidence            34689999999998763 5789999999999999321111245899999 9999999999999997641 0234678888


Q ss_pred             HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc--c----c--eeeccccccc--------cC---CChhhHHHH
Q 020079          129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK--N----S--CMDYGFHMAI--------TK---WDEVVSDEM  188 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~--~----~--~~~~~~~~~~--------~~---~~~~~~~~~  188 (331)
                      ...+.++++||||++|+....+. .....++...+...  .    .  ...+....+.        ..   ......+.+
T Consensus        82 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  161 (396)
T 2vhl_A           82 IMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELF  161 (396)
T ss_dssp             HHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSSSEEEEEEEECSSSCGGGCTTSCGGGCCCCCHHHH
T ss_pred             HHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccccceEEEeeecCccCccccCCCCHHHccCCCHHHH
Confidence            88899999999999998643322 12223333333221  1    1  1111111100        00   011124556


Q ss_pred             HHHHHHhCCCeEEEE-EecCCCCcCCHHHHHHHHHHHHHcCCcEEE-Ec-CCchhhHHHHHHHHHcCCC
Q 020079          189 EVMVKEKGINSFKFF-MAYKGSFMINDELLIEGFKRCKSLGALAMV-HA-ENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       189 ~~~~~~~g~~~ik~~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~-H~-e~~~~~~~~~~~~~~~G~~  254 (331)
                      +++. +.+.+.+|.+ +.++..      ...++++.|+++|++++. |+ ++..+...    ..+.|..
T Consensus       162 ~~~~-~~~~~~ik~~~~~p~~~------~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~----a~~~G~~  219 (396)
T 2vhl_A          162 KKWQ-QEAGGLIKIVTLAPEED------QHFELIRHLKDESIIASMGHTDADSALLSD----AAKAGAS  219 (396)
T ss_dssp             HHHH-HHTTTCEEEEEECGGGS------GGGHHHHHHHHTTCEEEECSBCCCHHHHHH----HHHTTCC
T ss_pred             HHHH-HhcCCcceEEEECCCCC------CHHHHHHHHHHCCCEEeecccCCCHHHHHH----HHHcCCC
Confidence            6666 4556667744 333322      123678889999999998 97 45554443    3445653

>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*

Probab=99.81  E-value=3.5e-19  Score=178.16  Aligned_cols=171  Identities=15%  Similarity=0.209  Sum_probs=122.0

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCC------------CCCCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI------------NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~------------~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..|++|+|++|+|+++..+++|.|+||||++||+..            ..++++++||++|++|+|||||+|+|+..+  
T Consensus       336 ~~DLVItNA~IVD~tGi~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl~~P--  413 (840)
T 4gy7_A          336 SLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICP--  413 (840)
T ss_dssp             SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred             cCCEEEeCeEEECCCCeEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCCCCC--
Confidence            358999999999998888999999999999999632            223567999999999999999999998765  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM  191 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (331)
                           .    ....++.+||||+++.......        .................+++.+.......   ..+.+.++
T Consensus       414 -----~----~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a~~~~~vn~g~~~~~~~~---~~~~L~el  481 (840)
T 4gy7_A          414 -----Q----LVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSS---KPDELHEI  481 (840)
T ss_dssp             -----H----HHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHHTTTSSSEEEEEEECCCS---SSHHHHHH
T ss_pred             -----C----chHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHHhhhhcceeEEEEeCCCCcc---cHHHHHHh
Confidence                 1    1345678999999976432211        11222333333333344555444332222   23455566


Q ss_pred             HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                      . +.|+.++|.+..+    ..+++.+.++++.+++++..+.+|.+.....
T Consensus       482 ~-~aGa~g~K~~~~~----~~t~~~i~~aL~~A~e~g~~V~ih~e~~~~~  526 (840)
T 4gy7_A          482 I-KAGAMGLKLHEDW----GSTPAAIDNCLTIAEHHDIQINIHTDTLNEA  526 (840)
T ss_dssp             H-HHTCSEEEEETTT----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSS
T ss_pred             h-hceeeEEEecccc----CCCHHHHHHHHHHHHHhCCEEEEeccCcchh
Confidence            6 6789999987543    4578999999999999999999998765443

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*

Probab=99.81  E-value=9.9e-19  Score=163.58  Aligned_cols=248  Identities=14%  Similarity=0.083  Sum_probs=140.9

Q ss_pred             ccEEEECcEEEeCCC-------ceeeeEEEeCCEEEEeeCCCCCCC--CceEEeCCCCeeecccccccccccCCCCC---
Q 020079           53 SKILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFMG---  120 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~-------~~~~~v~i~~g~I~~ig~~~~~~~--~~~~id~~g~~v~PG~ID~H~H~~~~~~~---  120 (331)
                      ++++|+|+++++++.       ..+++|+|+||||++||+....+.  +.++||++|++|+|||||+|+|+......   
T Consensus         5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~   84 (416)
T 2q09_A            5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEE   84 (416)
T ss_dssp             CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEEECEEEEEECCCCCSCCHHH
T ss_pred             ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhccccCCCeEEeCCCCEECCcccccccCcchhhhhHHH
Confidence            468999999998664       257899999999999998643332  45799999999999999999999764210   


Q ss_pred             ----------------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhcc
Q 020079          121 ----------------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKN  166 (331)
Q Consensus       121 ----------------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~  166 (331)
                                                  ..++++++..    .+.++++||||+.|+......  .....++...+....
T Consensus        85 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2q09_A           85 FELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEA  164 (416)
T ss_dssp             HHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCSCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCcccChHhHHHHHHHHHHHHhh
Confidence                                        0133444332    366789999999986532221  112333333332211


Q ss_pred             ceeecc--c---cc-ccc--CCChhhHHHHH-HHHH---HhC-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          167 SCMDYG--F---HM-AIT--KWDEVVSDEME-VMVK---EKG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       167 ~~~~~~--~---~~-~~~--~~~~~~~~~~~-~~~~---~~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      ..+...  +   +. +..  ...++..+... ++.+   ..+ .+.++.+   .....++.+.++++++.|+++|+++++
T Consensus       165 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~g~~v~~  241 (416)
T 2q09_A          165 LPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVF---CEHIGFSLAQTEQVYLAADQYGLAVKG  241 (416)
T ss_dssp             SSSEEEEEEEEETSCCGGGTTCHHHHHHHHHHTHHHHHHHTTCCSEEEEB---BSTTSBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEeeeccccCCccccCCHHHHHHHHHhhhhHHHHhcccccccccc---cCCCcCCHHHHHHHHHHHHHCCCcEEE
Confidence            111110  0   10 000  00112222211 1111   223 4444432   223346889999999999999999999


Q ss_pred             EcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHH------HHHHHHHHHHcC
Q 020079          234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKARKAG  307 (331)
Q Consensus       234 H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~------~~~~i~~~~~~G  307 (331)
                      |+......+ ..+.+.+.|..... |.....        ++.++++.+.|+.  +.+++...      ....++.+.+.|
T Consensus       242 H~~~~~~~~-~~~~~~~~g~~~~~-H~~~~~--------~~~~~~~~~~g~~--~~~~p~~~~~~~~~~~~~~~~~~~~G  309 (416)
T 2q09_A          242 HMDQLSNLG-GSTLAANFGALSVD-HLEYLD--------PEGIQALAHRGVV--ATLLPTAFYFLKETKLPPVVALRKAG  309 (416)
T ss_dssp             EESSSCCCS-HHHHHHHTTCSEEE-ECTTCC--------HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCCHHHHHHTT
T ss_pred             EECCCCchH-HHHHHHHcCCCEEe-ecccCC--------HHHHHHHHHcCCe--EEEcCccHHhhccccccCHHHHHHCC
Confidence            975432111 12233455654322 222222        1345566666765  44443211      123467888999


Q ss_pred             CCEEEecC
Q 020079          308 PNFLNTTI  315 (331)
Q Consensus       308 i~v~~~~~  315 (331)
                      +++..++.
T Consensus       310 v~~~~gtD  317 (416)
T 2q09_A          310 VPMAVSSD  317 (416)
T ss_dssp             CCEEECCC
T ss_pred             CeEEEecC
Confidence            99887654

>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A

Probab=99.80  E-value=1.7e-18  Score=162.07  Aligned_cols=262  Identities=14%  Similarity=0.098  Sum_probs=143.2

Q ss_pred             CccEEEECcEEEeCCC-------ceeeeEEEeCCEEEEeeCCCCCCC----CceEEeCCCCeeecccccccccccCCCC-
Q 020079           52 SSKILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVGD----DVKVLDATGKFVMPGGIDPHTHLAMEFM-  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~-------~~~~~v~i~~g~I~~ig~~~~~~~----~~~~id~~g~~v~PG~ID~H~H~~~~~~-  119 (331)
                      +.+++|+|+++++++.       ..+++|+|+||||++||+....+.    +.++||++|++|+|||||+|+|+..... 
T Consensus        14 ~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~   93 (419)
T 2puz_A           14 NATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNR   93 (419)
T ss_dssp             -CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCSSCC
T ss_pred             CCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccchhhh
Confidence            4679999999998654       257899999999999998643322    2589999999999999999999965411 


Q ss_pred             ---------C---------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHH
Q 020079          120 ---------G---------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK  163 (331)
Q Consensus       120 ---------~---------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~  163 (331)
                               +                     ..++++.+.    ..+.++++|||++.|+......  .....++.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~  173 (419)
T 2puz_A           94 AMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRL  173 (419)
T ss_dssp             HHHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCSCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCchhHHHHHHHHHHH
Confidence                     0                     012222222    2356788999999985322211  122333444433


Q ss_pred             hccceeec-----cccccccC---CChhhHHH-----HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCc
Q 020079          164 AKNSCMDY-----GFHMAITK---WDEVVSDE-----MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL  230 (331)
Q Consensus       164 ~~~~~~~~-----~~~~~~~~---~~~~~~~~-----~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~  230 (331)
                      .....+..     ..+.....   ..++..+.     +..+......+.++.+..   ...++.+.++++++.|+++|++
T Consensus       174 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~g~~  250 (419)
T 2puz_A          174 ETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAHAEGLADAVDGFCE---GIAFSVKEIDRVFAAAQQRGLP  250 (419)
T ss_dssp             TTTSSCEEEEEECCTTCCCGGGTTCHHHHHHHTHHHHHHHHHHTTCCSEECCEES---TTSBCHHHHHHHHHHHHHTTCC
T ss_pred             hhhcCceEEEEecccccCchhhcccHHHHHHHHHhhhhhhhhhcccccccccccC---CCCcCHHHHHHHHHHHHHCCCc
Confidence            32211111     01110000   01111111     111111112333333221   2345789999999999999999


Q ss_pred             EEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHH------HHHHHHHHH
Q 020079          231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKAR  304 (331)
Q Consensus       231 v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~------~~~~i~~~~  304 (331)
                      +.+|+....... ..+...+.|..... |.....        ++.++++.+.|+.  +++++...      ....++.+.
T Consensus       251 v~~H~~~~~~~~-~~~~~~~~g~~~~~-H~~~~~--------~~~~~~~~~~g~~--~~~~p~~~~~l~~~~~~~~~~~~  318 (419)
T 2puz_A          251 VKLHAEQLSNLG-GAELAASYNALSAD-HLEYLD--------ETGAKALAKAGTV--AVLLPGAFYALREKQLPPVQALR  318 (419)
T ss_dssp             BEEEESSSSCCS-HHHHHHHTTCSEEE-ECTTCC--------HHHHHHHHHHTCE--EEECHHHHHHHTCCCCCCHHHHH
T ss_pred             EEEEecccccCC-HHHHHHhcCCceeh-HhccCC--------HHHHHHHHHcCCc--EEECCchhhhhcccccccHHHHH
Confidence            999974322111 12333455654433 222211        1234556666764  44443211      123457888


Q ss_pred             HcCCCEEEecC--Cccccchhhhhhh
Q 020079          305 KAGPNFLNTTI--PLCDSCSNIIRMV  328 (331)
Q Consensus       305 ~~Gi~v~~~~~--p~~~~~~~~~~~~  328 (331)
                      +.|+++..++.  |..+...++..+|
T Consensus       319 ~~Gv~~~lgsD~~~~~~~~~~l~~~~  344 (419)
T 2puz_A          319 DAGAEIALATDCNPGTSPLTSLLLTM  344 (419)
T ss_dssp             HHTCCEEECCCCCSSSCCBCCHHHHH
T ss_pred             HCCCeEEEECCCCCCCCccccHHHHH
Confidence            99999887554  3333333444433

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A

Probab=99.80  E-value=1.5e-18  Score=161.89  Aligned_cols=180  Identities=21%  Similarity=0.253  Sum_probs=119.1

Q ss_pred             EEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-C-----------
Q 020079           55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-----------  120 (331)
Q Consensus        55 ~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~-----------  120 (331)
                      ++|+|++|++++.  ..+++|+|+||||++||+..   ++.+ ||++|++|+|||||+|+|+..... +           
T Consensus         1 ~li~n~~v~~~~~~~~~~~~v~I~~g~I~~vg~~~---~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~   76 (406)
T 1p1m_A            1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGE---VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWL   76 (406)
T ss_dssp             CEEEEEEECCSTTSCCEEEEEEEETTEEEEEEESS---CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCSCCHHHHH
T ss_pred             CEEEccEEEecCccccccceEEEECCEEEEeeCCC---Ccce-ecCCCcEEeecccchhhccchhhhccccCCCCHHHHH
Confidence            3799999998764  57899999999999999864   2456 999999999999999999976421 0           


Q ss_pred             ---------CCChhhHHHHH----HHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHH
Q 020079          121 ---------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE  187 (331)
Q Consensus       121 ---------~~~~~~~~~~~----~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (331)
                               ..++++++...    +.++++||||++|+..    .....++...+.+.+......+. .......+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~g~r~~~~~~~~-~~~~~~~~~~~~  151 (406)
T 1p1m_A           77 FSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYF----HEEWIAKAVRDFGMRALLTRGLV-DSNGDDGGRLEE  151 (406)
T ss_dssp             HTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEES----SHHHHHHHHHHHCCEEEEEEEEC-CBTTBCTTHHHH
T ss_pred             HhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechh----CHHHHHHHHHHcCCEEEEEcccc-cCCCCHHHHHHH
Confidence                     02345554433    4568899999999753    12333344444443332211111 001112233444


Q ss_pred             HHHHHHH-hCC-CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHH
Q 020079          188 MEVMVKE-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE  243 (331)
Q Consensus       188 ~~~~~~~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~  243 (331)
                      ..+.++. .+. ..++....++.++.++++.++++++.|+++|+++++|+ ++.+....
T Consensus       152 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~  210 (406)
T 1p1m_A          152 NLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYD  210 (406)
T ss_dssp             HHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCC
T ss_pred             HHHHHHHhhCCCCcEEEEEecCccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHH
Confidence            4344422 222 35777777777777899999999999999999999998 45444443

>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}

Probab=99.80  E-value=9.3e-18  Score=158.59  Aligned_cols=257  Identities=19%  Similarity=0.245  Sum_probs=143.2

Q ss_pred             CccEEEECcEEE-eCCC----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCC-----
Q 020079           52 SSKILIKGGTVV-NAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----  120 (331)
Q Consensus        52 ~~~~~i~n~~i~-~~~~----~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-----  120 (331)
                      +.+++|+|++|+ ++++    .++++|+|+||||++||+..+.+ ++.++||++|++|+|||||+|+|+.+....     
T Consensus        28 p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~~~~~~~vIDa~G~~v~PG~ID~H~H~~~~~~~g~~~~  107 (479)
T 3hpa_A           28 PKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAA  107 (479)
T ss_dssp             -CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGSCSCCSEEEECTTEEEEECEEECCCCGGGGGSCSCTTT
T ss_pred             CCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccCCCCCCeEEECCCCEEeeCceeHhhCcchhcccccccC
Confidence            467999999976 4442    46899999999999999865543 356899999999999999999998654210     


Q ss_pred             -----------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccccc--
Q 020079          121 -----------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHM--  175 (331)
Q Consensus       121 -----------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--  175 (331)
                                       ....++.+    .....++..|+|++.+.......  ............+.+.........  
T Consensus       108 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (479)
T 3hpa_A          108 QNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVG  187 (479)
T ss_dssp             TTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHHHHHHHHHTCEEEEEEEECC--
T ss_pred             CCcchHHHHhhhhhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchhhHHHHHHHHHHhcchhhhhhheeecc
Confidence                             01112221    23455688999999987544332  334444444444433221111100  


Q ss_pred             ---------cccCCChhhHHHHHHHHHH---hCC-CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhh
Q 020079          176 ---------AITKWDEVVSDEMEVMVKE---KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV  241 (331)
Q Consensus       176 ---------~~~~~~~~~~~~~~~~~~~---~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~  241 (331)
                               ..........+...++...   .+. ........+......+.+.+.++.+.|++.|.++..|. +...+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~  267 (479)
T 3hpa_A          188 QRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVNDI  267 (479)
T ss_dssp             --------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEESCTTTSCHHHHHHHHHHHHHHTCEEEEEESCSHHHH
T ss_pred             ccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeEecccccccCCHHHHHHHHHHHHhcCCeEEeecccchHHH
Confidence                     0000111222233333322   111 23344556666777899999999999999999999996 444333


Q ss_pred             HHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCC
Q 020079          242 FEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGP  308 (331)
Q Consensus       242 ~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi  308 (331)
                      ....        +...+.+...+.....+.....+     ....+..+.+..  ..+++..     ......+.+.+.|+
T Consensus       268 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~  340 (479)
T 3hpa_A          268 AYSREKFGMTPAEYAEDLGWVGHDVWHAHCVQLDD-----AGIGLFARTGTG--VAHCPCSNMRLASGIAPVKKMRLAGV  340 (479)
T ss_dssp             HC-------CHHHHHHHTTCCSTTEEEEECTTCCH-----HHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHHHHTC
T ss_pred             HHHHHHcCCchHHHHhhhccccccceeeeeEecch-----hHHHHHHhcCCc--eeeccccccccccCccchhHHHhcCC
Confidence            2221        23444555444332222111111     112333444443  3333211     11234566777888


Q ss_pred             CEEEecC
Q 020079          309 NFLNTTI  315 (331)
Q Consensus       309 ~v~~~~~  315 (331)
                      ++..++.
T Consensus       341 ~v~~gtD  347 (479)
T 3hpa_A          341 PVGLGVD  347 (479)
T ss_dssp             CEEECCC
T ss_pred             cEEeecc
Confidence            8876654

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*

Probab=99.78  E-value=2.3e-18  Score=159.29  Aligned_cols=180  Identities=13%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             EEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC--C---CCCChhhHH
Q 020079           55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--M---GSETIDDFF  128 (331)
Q Consensus        55 ~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~--~---~~~~~~~~~  128 (331)
                      ++|+|++|++++. .++++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+....  .   ...+++.++
T Consensus         2 ~li~~~~v~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~g~~~~~~~~~~~~~~~~   81 (382)
T 1yrr_A            2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLE   81 (382)
T ss_dssp             EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEECEEEEEESEETTEESSSSTTTSSHHHHH
T ss_pred             EEEEeeEEEcCCceeeCCEEEEECCEEEEEecCCCCCccceeecCCCCEEccCEEEEeecccCCcCccccccCCCHHHHH
Confidence            6899999999875 357899999999999997643333568999999999999999999986421  0   112567777


Q ss_pred             HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHH----hccceeeccccccc--c--C---CC----hhhHHHHHHHH
Q 020079          129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK----AKNSCMDYGFHMAI--T--K---WD----EVVSDEMEVMV  192 (331)
Q Consensus       129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~--~--~---~~----~~~~~~~~~~~  192 (331)
                      ...+.++++||||++|+....+. ...+.+...++.    +.+ ........+.  .  .   ..    ....+.++ +.
T Consensus        82 ~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~  159 (382)
T 1yrr_A           82 IMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQ-ALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVD-FL  159 (382)
T ss_dssp             HHHHHHHHTTEEEEEEEEECCCHHHHHHHHHHHHHHHHHCTTS-BCCEEEECSSCCCSCC-CCCSCSCCHHHHHHHH-HH
T ss_pred             HHHHHHHhCCeEEEEeecCCCCHHHHHHHHHHHHHHhhccCCc-eeEEEEeCCcCCccccCCCCHHHccCCCHHHHH-HH
Confidence            77888999999999997543322 122222222222    222 1111111100  0  0   00    11134444 55


Q ss_pred             HHhCCCeEEEEE-ecCCCCcCCHHHHHHHHHHHHHcCCcEEE-EcC-CchhhHHH
Q 020079          193 KEKGINSFKFFM-AYKGSFMINDELLIEGFKRCKSLGALAMV-HAE-NGDAVFEG  244 (331)
Q Consensus       193 ~~~g~~~ik~~~-~~~~~~~~~~~~l~~~~~~A~~~g~~v~~-H~e-~~~~~~~~  244 (331)
                       +.+.+.+|.+. .+       .+.+.++++.|+++|+++++ |+. +.+++...
T Consensus       160 -~~~~~~ik~~~~~~-------~~~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~~  206 (382)
T 1yrr_A          160 -CENADVITKVTLAP-------EMVPAEVISKLANAGIVVSAGHSNATLKEAKAG  206 (382)
T ss_dssp             -HHTTTTEEEEEECG-------GGSCHHHHHHHHHTTCEEEECSCCCCHHHHHHH
T ss_pred             -HhcCCCEEEEEECC-------CCChHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Confidence             56777887652 21       24556789999999999998 985 55554433

>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*

Probab=99.78  E-value=1.5e-17  Score=154.32  Aligned_cols=249  Identities=18%  Similarity=0.128  Sum_probs=135.2

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC--CCCceEEeCCCCeeecccccccccccCCCCCC-CChhhHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-ETIDDFFS  129 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~--~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-~~~~~~~~  129 (331)
                      ..++|+|++|++++...+++|+|+||+|++|++....  +++.++||++|++|+|||||+|+|+....... ........
T Consensus         8 ~~~~i~n~~v~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~   87 (390)
T 1onw_A            8 GFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEV   87 (390)
T ss_dssp             CCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEECEEEEEECTTCCBCTTSGGGBCCCC
T ss_pred             ceEEEECcEEECCCCCccceEEEECCEEEEEecCcccCCCCCCeEEeCCCCEECcCeeEeeECccccCccccccccCHHH
Confidence            4589999999998766678999999999999985432  13468999999999999999999986431000 00011112


Q ss_pred             HHHHHHhCCceEEecCcCCCCC--cH---HHHHHHHHHHhccceeecccc-ccccCCChhhHHHHHHHHHHhCCCeEEEE
Q 020079          130 GQAAALAGGTTMHIDFVIPING--SL---TAGFEAYEKKAKNSCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSFKFF  203 (331)
Q Consensus       130 ~~~~~l~~GvTtv~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ik~~  203 (331)
                      ..+.++++||||++|+....+.  ..   ....+...+.+.+.......+ .+...........+ ...  ....++++.
T Consensus        88 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~~~~g~~~~  164 (390)
T 1onw_A           88 ALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDV-AII--DRVIGVKCA  164 (390)
T ss_dssp             CHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSCCCSSSCHHHHH-HHC--TTEEEEEEE
T ss_pred             HHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCCceEEeccccCCCchhhhhhhcchh-hhH--HHhhcceee
Confidence            3577899999999998644322  11   122223333332221111111 11111111111111 111  111223666


Q ss_pred             EecCCCCcCCHHHHHHHHHHHHHcCC------cEEEEc-CCchhhHHHHHHHHHcCCCCccc-ccccCChHHHHHHHHHH
Q 020079          204 MAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEG-HALSRPPLLEGEATTRA  275 (331)
Q Consensus       204 ~~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~e~~~i~~~  275 (331)
                      +.++.....+.++++++++.+++.+.      .+++|. ++....+...+.. +.|.....+ +..+.. .. ...+.+.
T Consensus       165 ~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~~~~~~~~~~-~~g~~~v~~l~~~h~~-~~-~~~~~~~  241 (390)
T 1onw_A          165 ISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLL-ENCDVPISKLLPTHVN-RN-VPLFEQA  241 (390)
T ss_dssp             ESSTTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTTTTHHHHHHH-HTCCCCGGGEEEECGG-GS-HHHHHHH
T ss_pred             ecCCCCCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHHHHHHHHHHH-hccCCceEEeeccccc-cC-HHHHHHH
Confidence            66665566789999999888876553      377896 5555554443333 333322221 111110 00 1122334


Q ss_pred             HHHHHhcCCCEEEEeCC-CH--HHHHHHHHHHHcCCC
Q 020079          276 IRLAEFVNTPLYVVHVM-SM--DAMEEIAKARKAGPN  309 (331)
Q Consensus       276 ~~l~~~~g~~~~i~H~~-~~--~~~~~i~~~~~~Gi~  309 (331)
                      ++.++..+. ..+ ++. ..  ...+.++++.+.|++
T Consensus       242 ~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~g~~  276 (390)
T 1onw_A          242 LEFARKGGT-IDI-TSSIDEPVAPAEGIARAVQAGIP  276 (390)
T ss_dssp             HHHHHTTCC-EEE-ETTCCSSSCHHHHHHHHHHTTCC
T ss_pred             HHHHhcCCc-ccc-ccccCCCCcCHHHHHHHHHcCCC
Confidence            444444332 222 222 11  356788888899974

>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A

Probab=99.77  E-value=2e-17  Score=154.88  Aligned_cols=248  Identities=15%  Similarity=0.112  Sum_probs=137.7

Q ss_pred             ccEEEEC-cEEEeCCC--------------ceeeeEEEeCCEEEEeeCCC-CC-CCCceEEeCCCCeeeccccccccccc
Q 020079           53 SKILIKG-GTVVNAHH--------------QQIADVYVEDGIVVAVQPNI-NV-GDDVKVLDATGKFVMPGGIDPHTHLA  115 (331)
Q Consensus        53 ~~~~i~n-~~i~~~~~--------------~~~~~v~i~~g~I~~ig~~~-~~-~~~~~~id~~g~~v~PG~ID~H~H~~  115 (331)
                      .+++|+| ++|++++.              ..+++|+|+||||++||+.. .. .+..++||++|++|+|||||+|+|+.
T Consensus         5 ~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~   84 (421)
T 2bb0_A            5 IDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLV   84 (421)
T ss_dssp             EEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTTTTTCEEEEEEECTTCEEEECEEECCBCCC
T ss_pred             ccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEecccccccCCCCeEEeCCCCEeccCeeccCcCcc
Confidence            4689999 99997652              25789999999999999854 20 12357999999999999999999986


Q ss_pred             CCCCC-------------------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCC--cHHHHHH
Q 020079          116 MEFMG-------------------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFE  158 (331)
Q Consensus       116 ~~~~~-------------------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~  158 (331)
                      .....                               ..+++.+..    ..+.++++||||+.|+......  .....++
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~  164 (421)
T 2bb0_A           85 FGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLR  164 (421)
T ss_dssp             CCSCCGGGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSHHHHHHHHH
T ss_pred             ccccchHHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEeccccCcCccchHHHHH
Confidence            54110                               012222222    2366788999999985422211  1122333


Q ss_pred             HHHHHhccceeecc-----ccc-c--ccCCChhhHHHHHHHHH---Hh-CCCeEEEEEecCCCCcCCHHHHHHHHHHHHH
Q 020079          159 AYEKKAKNSCMDYG-----FHM-A--ITKWDEVVSDEMEVMVK---EK-GINSFKFFMAYKGSFMINDELLIEGFKRCKS  226 (331)
Q Consensus       159 ~~~~~~~~~~~~~~-----~~~-~--~~~~~~~~~~~~~~~~~---~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~  226 (331)
                      ..++......+...     .+. +  .....++..+...+..+   .. ..+.++.+.   ....++.+.++++++.|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~l~~~~~~a~~  241 (421)
T 2bb0_A          165 VAKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFT---ETGVFTVSQSRRYLQKAAE  241 (421)
T ss_dssp             HHHHHHHHSSSEEEEEEEEESSCCGGGTTCHHHHHHHHHTTHHHHHHTTCCSEEEEBB---CTTSBCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCceEEEEeeccccCChhhcccHHHHHHHHHHhhHHhhccCccccccccC---CcCCCCHHHHHHHHHHHHH
Confidence            33332211111110     010 0  00001112222111111   12 234444321   2234588999999999999


Q ss_pred             cCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHH------HHHHH
Q 020079          227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEI  300 (331)
Q Consensus       227 ~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~------~~~~i  300 (331)
                      +|+++++|+....... ..+...+.|..... |+....        ++.++++.+.|+.  ++|++...      .+..+
T Consensus       242 ~g~~v~~H~~~~~~~~-~~~~~~~~g~~~~~-H~~~~~--------~~~i~~~~~~g~~--~~~~p~~~~~l~~~~~~~~  309 (421)
T 2bb0_A          242 AGFGLKIHADEIDPLG-GAELAGKLKAVSAD-HLVGTS--------DEGIKKLAEAGTI--AVLLPGTTFYLGKSTYARA  309 (421)
T ss_dssp             TTCEEEEEECSSSCCS-HHHHHHHTTCSEEE-ECTTCC--------HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCCH
T ss_pred             CCCCEEEEeccccccC-HHHHHHHcCCcEEh-hhhcCC--------HHHHHHHHHcCCe--EEECCchhhhhcccccchH
Confidence            9999999973221111 12233445544322 222111        2345566666764  55554311      22346


Q ss_pred             HHHHHcCCCEEEecC
Q 020079          301 AKARKAGPNFLNTTI  315 (331)
Q Consensus       301 ~~~~~~Gi~v~~~~~  315 (331)
                      +.+.++|++++.++.
T Consensus       310 ~~~~~~Gv~v~lgtD  324 (421)
T 2bb0_A          310 RAMIDEGVCVSLATD  324 (421)
T ss_dssp             HHHHHTTCCEEECCC
T ss_pred             HHHHHCCCeEEEeCC
Confidence            889999999887654

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}

Probab=99.77  E-value=1.9e-18  Score=160.68  Aligned_cols=95  Identities=37%  Similarity=0.450  Sum_probs=73.0

Q ss_pred             CccEEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC---------
Q 020079           52 SSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~---------  121 (331)
                      +.+++|+|++|+++++ ...++|+|+||+|++|++... +++.++||++|++|+|||||+|+|++....+.         
T Consensus         4 ~~~~~i~~~~i~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~~~~~~~~~~   82 (396)
T 3ooq_A            4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-DPDAEIVDLTGKFLFPGFVDAHSHIGLFEEGVGYYYSDGNE   82 (396)
T ss_dssp             --CEEEEEEEECCSSSCCEEEEEEEETTEEEEEESCCC-CTTSEEEECTTCEEEECEEEEEECTTTSCTTSCGGGCCSCC
T ss_pred             cceEEEECcEEEeCCCCeEEeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEecCEEecccccCccccCcccccccccc
Confidence            3568999999999874 334899999999999998765 55679999999999999999999998642211         


Q ss_pred             --------CChhhHH----HHHHHHHhCCceEEecCcC
Q 020079          122 --------ETIDDFF----SGQAAALAGGTTMHIDFVI  147 (331)
Q Consensus       122 --------~~~~~~~----~~~~~~l~~GvTtv~d~~~  147 (331)
                              ...++.+    .....++++|||++.++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~g  120 (396)
T 3ooq_A           83 ATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPG  120 (396)
T ss_dssp             TTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCC
T ss_pred             ccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCC
Confidence                    1111111    3567889999999999854

>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*

Probab=99.77  E-value=2.6e-18  Score=165.20  Aligned_cols=63  Identities=22%  Similarity=0.357  Sum_probs=52.8

Q ss_pred             cEEEECcEEEeCCCc--eeeeEEEeCCEEEEeeCCCCC-----CCCceEEeCCCCeeecccccccccccC
Q 020079           54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINV-----GDDVKVLDATGKFVMPGGIDPHTHLAM  116 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~--~~~~v~i~~g~I~~ig~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~  116 (331)
                      +++|+|++|++++..  ...+|+|+||||++||+..+.     .++.++||++|++|+|||||+|+|+..
T Consensus        37 ~~li~ng~I~t~~~~~~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~  106 (534)
T 3icj_A           37 MKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE  106 (534)
T ss_dssp             EEEEESSEEEEEETTEEEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHH
T ss_pred             CEEEECCEEECCCCCCceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhh
Confidence            379999999997754  477999999999999985432     235689999999999999999999643

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A*

Probab=99.70  E-value=1.9e-16  Score=145.29  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=82.9

Q ss_pred             EEEECcEEEeCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC--CCCCCChhhHHHHH
Q 020079           55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMGSETIDDFFSGQ  131 (331)
Q Consensus        55 ~~i~n~~i~~~~~~-~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~  131 (331)
                      ++|+|++|++++.. .+++|+|+||+|.+|++....+++.++||++|++|+|||||+|+|....  +....+++.+....
T Consensus         5 ~~i~n~~i~~~~~~~~~~~i~I~dG~I~~i~~~~~~~~~~~viD~~G~~v~PGfID~HvHg~~G~~~~d~~~~e~l~~~~   84 (381)
T 3iv8_A            5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETIDTMH   84 (381)
T ss_dssp             EEEEEEEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCEEEEEEEEEEEECEEEEEECEETTEETTTSCSHHHHHHHH
T ss_pred             EEEEccEEEcCCCeEeccEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEccCeEeeeecccCCCCCCCCCCHHHHHHHH
Confidence            68999999998764 4679999999999999865444567899999999999999999997643  11224678889999


Q ss_pred             HHHHhCCceEEecCcCCCCC-cHHHHHHHHHH
Q 020079          132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEK  162 (331)
Q Consensus       132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~  162 (331)
                      +.++++|||+++++....+. ...+.++.+++
T Consensus        85 ~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~  116 (381)
T 3iv8_A           85 KANLKSGCTSFLPTLITSSDENMRQAIAAARE  116 (381)
T ss_dssp             HHHHHTTEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccCCCCHHHHHHHHHHHHH
Confidence            99999999999976543332 33444444433

>4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ...

Probab=99.65  E-value=4.2e-15  Score=144.48  Aligned_cols=170  Identities=18%  Similarity=0.193  Sum_probs=109.8

Q ss_pred             CCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCC----------CCCCCceEEeCCCCeeecccccccccccCCCCC
Q 020079           51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----------NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG  120 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~----------~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~  120 (331)
                      ...|++|+|++|+|++++.+++|+|+||||++||+..          ..++++++||++|++|+|||||+|+|+.++  +
T Consensus        63 ~~~DlvI~Na~Ivd~~Gi~kaDIlIkDGrIaaIG~ag~pd~~d~vdl~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~--~  140 (566)
T 4ep8_C           63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICP--Q  140 (566)
T ss_dssp             GSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECEEEEEEECSCT--T
T ss_pred             CCCCEEEECcEEECCCCeEEeEEEEECCEEEEeecCCCcccccccccccCCCCEEEECCCCEEEcCEEEecccccCC--C
Confidence            3568999999999998888999999999999999732          123578999999999999999999999876  2


Q ss_pred             CCChhhHHHHHHHHHhCCceEEecCcCCC--------CCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHH
Q 020079          121 SETIDDFFSGQAAALAGGTTMHIDFVIPI--------NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV  192 (331)
Q Consensus       121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (331)
                      .     .    ......+.++........        ....................++.+.........   .....+.
T Consensus       141 ~-----~----~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~  208 (566)
T 4ep8_C          141 Q-----A----EEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQP---DALREQV  208 (566)
T ss_dssp             H-----H----HHHHHHTEEEEEEECSSSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCH---HHHHHHH
T ss_pred             c-----c----chhhhhhHHHHhhCceEEEEecCCCCCchHHHHHHHHHHhccccceeeeeecccccccc---hhhHHHh
Confidence            1     1    112223333333111110        112333334444444445566655544433332   2333333


Q ss_pred             HHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch
Q 020079          193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD  239 (331)
Q Consensus       193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~  239 (331)
                       ..+...++.+..+    .............+...+.....|.+...
T Consensus       209 -~a~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  250 (566)
T 4ep8_C          209 -AAGVIGLKIHEDW----GATPAAIDCALTVADEMDIQVALHSDTLN  250 (566)
T ss_dssp             -HHTCSEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred             -hhccccccccccc----cccchhhhhHhHHHHHhcchhhhhhhhHH
Confidence             5677777765543    24567777888888889999999975443

>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}

Probab=99.63  E-value=2.1e-14  Score=130.42  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=107.3

Q ss_pred             EEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCC-CCCceEEeCCCCeeecccccccccccCCCCCCC-----Chh
Q 020079           55 ILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE-----TID  125 (331)
Q Consensus        55 ~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~-----~~~  125 (331)
                      .+|+|++|+|+..   .++++|+|+||||++||+..+. +++.++||++|++|+|||||+|+|+........     ..+
T Consensus         4 ~aI~narviD~~~g~~i~~~~V~I~dG~I~~Ig~~~~~~~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~   83 (403)
T 3mtw_A            4 KAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEYSD   83 (403)
T ss_dssp             EEEEEEEEEETTTTEEEESEEEEEETTEEEEEEETTCCCCTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGGGGSCH
T ss_pred             EEEEceEEEECCCCcEecCcEEEEECCEEEEEeCCCCCCCCCCEEEECCCCEEEeChheeeeCCccccccCccccccccH
Confidence            7899999999764   4689999999999999986543 456799999999999999999999976521110     011


Q ss_pred             hHH-----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc-ce--eecc-------cccc-------------c
Q 020079          126 DFF-----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SC--MDYG-------FHMA-------------I  177 (331)
Q Consensus       126 ~~~-----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-------~~~~-------------~  177 (331)
                      ...     ......+..|+|+..+.......  ............. ..  ....       ....             .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (403)
T 3mtw_A           84 RFWSVVQTANAKKTLEAGFTTVRNVGAADYD--DVGLREAIDAGYVPGPRIVTAAISFGATGGHCDSTFFPPSMDQKNPF  161 (403)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEECCCSTTH--HHHHHHHHHTTSSCCCEEEECCSCEESTTSTTSCCSSCGGGCCCCTT
T ss_pred             HHHhhhhhhhhhhccccccceeecccccccc--chhhhhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            111     12234577899999877543321  1111111111100 00  0000       0000             0


Q ss_pred             cCC-ChhhHHHHHHHHHHhCCCeEEEEEec--------CCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          178 TKW-DEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       178 ~~~-~~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                      ... ..+......... ..+....+.....        ........+.+.++++.|++.+.++..|.......
T Consensus       162 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  233 (403)
T 3mtw_A          162 NSDSPDEARKAVRTLK-KYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGI  233 (403)
T ss_dssp             CCCSHHHHHHHHHHHH-HTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHH
T ss_pred             ccchhHHHhhhhHhhh-hhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeEEEEeccchhH
Confidence            000 011122222222 3455544433221        12234568899999999999999999998655443

>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}

Probab=99.63  E-value=7.4e-16  Score=110.09  Aligned_cols=65  Identities=20%  Similarity=0.398  Sum_probs=55.9

Q ss_pred             ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCC
Q 020079           53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~  117 (331)
                      .+++|+|++|++++.  ...++|+|+||+|++|++....   .++.++||++|++|+|||||+|+|+.++
T Consensus         4 ~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~p   73 (81)
T 3ggm_A            4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHVIRG   73 (81)
T ss_dssp             CSEEEESSEEECSCTTCSEESEEEEETTEEEEEESGGGGGGCCTTCEEEECTTCEEEECCCCTTEEEECC
T ss_pred             CCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCchHhcccCCCCEEEECCCCEEeeCeEeeeeCCCCc
Confidence            568999999999764  4678999999999999985432   2356899999999999999999999987

>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}

Probab=99.56  E-value=3.8e-15  Score=135.99  Aligned_cols=66  Identities=29%  Similarity=0.514  Sum_probs=58.4

Q ss_pred             CccEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC
Q 020079           52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~  117 (331)
                      |.+++|+|++|+|++.   .++++|+|+||||++|++....+++.++||++|++|+|||||+|+|+...
T Consensus         3 M~~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~~~~~~~~~vID~~G~~v~PGfID~H~H~~~~   71 (426)
T 3mkv_A            3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAI   71 (426)
T ss_dssp             CCEEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCC
T ss_pred             cCcEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCCCCCCCCCEEEECCCCEEEeChhhhhhCcccc
Confidence            5679999999999874   46789999999999999976666678999999999999999999998765

>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10

Probab=99.48  E-value=5e-14  Score=129.99  Aligned_cols=70  Identities=24%  Similarity=0.328  Sum_probs=56.8

Q ss_pred             ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcC
Q 020079           68 QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI  147 (331)
Q Consensus        68 ~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~  147 (331)
                      ..+++|+|+||+|++|++     .  + || +|++|+|||||+|+|+.++.. ... .++....++++++||||++|+..
T Consensus        27 ~~~~~V~I~~g~I~~vg~-----~--~-iD-~g~~v~PGlID~H~H~~~~~~-~~~-~~l~~~~~~~l~~GvTtv~d~~~   95 (376)
T 1o12_A           27 EFTGDVEIEEGKIVKVEK-----R--E-CI-PRGVLMPGFVDPHIHGVVGAD-TMN-CDFSEMEEFLYSQGVTTFLATTV   95 (376)
T ss_dssp             EEEEEEEEETTEEEEEEE-----C--C-SC-CSSEEEECEEEEEECEETTEE-TTT-TCHHHHHHHHHTTTEEEEEEECC
T ss_pred             ccCceEEEECCEEEEeCC-----C--c-cC-CCCEEccCeEEEeecCCCCCC-CCh-hhHHHHHHHHHhCCcEEEEeccC
Confidence            468999999999999987     1  5 99 999999999999999986521 111 13666788899999999999864


Q ss_pred             C
Q 020079          148 P  148 (331)
Q Consensus       148 ~  148 (331)
                      .
T Consensus        96 ~   96 (376)
T 1o12_A           96 S   96 (376)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3

Probab=98.80  E-value=4.3e-08  Score=86.58  Aligned_cols=131  Identities=13%  Similarity=0.089  Sum_probs=64.3

Q ss_pred             ccccccccccCCCC--------CCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccc---
Q 020079          106 GGIDPHTHLAMEFM--------GSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF---  173 (331)
Q Consensus       106 G~ID~H~H~~~~~~--------~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---  173 (331)
                      |+||+|+|+..+..        ....++......+.+.++|||+++++...... +.....+..++.+.+.....++   
T Consensus         6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~   85 (291)
T 1bf6_A            6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD   85 (291)
T ss_dssp             SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred             ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccC
Confidence            99999999974310        01122344455667788999999988753221 2332222222222122222222   


Q ss_pred             --cccc-cCCChhhH-HHHHHHHHHhCCC-------eEEE-EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          174 --HMAI-TKWDEVVS-DEMEVMVKEKGIN-------SFKF-FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       174 --~~~~-~~~~~~~~-~~~~~~~~~~g~~-------~ik~-~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                        +... .....+.+ +.+.+.. ..|+.       .++. .+++........+.+++.++.|+++|+|+.+|+++
T Consensus        86 ~~hP~~~~~~~~~~l~~~~~~~l-~~gi~~~~~~~~~iGe~gld~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~  160 (291)
T 1bf6_A           86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSF  160 (291)
T ss_dssp             GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGG
T ss_pred             ccCcHhhhcCCHHHHHHHHHHHH-HhccCCcCcceeeEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCC
Confidence              1100 00111222 2333333 23321       2222 12211111112356888999999999999999864

>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...

Probab=98.68  E-value=1.4e-07  Score=85.13  Aligned_cols=175  Identities=11%  Similarity=0.004  Sum_probs=92.5

Q ss_pred             ccccccccccCCCCCC--CCh------hhHHH----HHHHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhccceeecc
Q 020079          106 GGIDPHTHLAMEFMGS--ETI------DDFFS----GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--~~~------~~~~~----~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  172 (331)
                      ||||+|+|+.......  ..+      ++...    ....+.++|||++++.+.... .+.....+..++.+...+...+
T Consensus        16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~la~~~~~~i~~~~G   95 (330)
T 2ob3_A           16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG   95 (330)
T ss_dssp             CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred             CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHHHHHHHHhCCcEEEEec
Confidence            9999999998631111  011      22222    256678899999998864321 1233333222222213333344


Q ss_pred             ccc--ccc--CCChhhH-HHHHHHHHH----h--CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC--ch
Q 020079          173 FHM--AIT--KWDEVVS-DEMEVMVKE----K--GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN--GD  239 (331)
Q Consensus       173 ~~~--~~~--~~~~~~~-~~~~~~~~~----~--g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~--~~  239 (331)
                      ++.  +..  ....+.+ +.+.+....    .  .+..+++.++ ........+.|++.++.|+++|+|+.+|++.  .+
T Consensus        96 ~hp~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld-~~~~~~q~~~f~~q~~lA~~~glPv~iH~~~~~r~  174 (330)
T 2ob3_A           96 LWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATT-GKATPFQELVLKAAARASLATGVPVTTHTAASQRD  174 (330)
T ss_dssp             CCSCCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECS-SSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTH
T ss_pred             CCcCCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCeEEEECCCCCCC
Confidence            442  111  1111222 223333211    1  2344555444 1111112344888999999999999999852  21


Q ss_pred             hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC---CEEEEeCC-CHHHHHHHHHHHHcCCCEEEec
Q 020079          240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT---PLYVVHVM-SMDAMEEIAKARKAGPNFLNTT  314 (331)
Q Consensus       240 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~---~~~i~H~~-~~~~~~~i~~~~~~Gi~v~~~~  314 (331)
                      .                               . +.++++++.|.   ++.+.||. +. +.+.++++.++|..++.++
T Consensus       175 a-------------------------------~-e~l~iL~~~g~~~~~~~i~H~f~~~-~~e~a~~~~~~G~~i~~~~  220 (330)
T 2ob3_A          175 G-------------------------------E-QQAAIFESEGLSPSRVCIGHSDDTD-DLSYLTALAARGYLIGLDH  220 (330)
T ss_dssp             H-------------------------------H-HHHHHHHHTTCCGGGEEECSGGGCC-CHHHHHHHHHTTCEEEECC
T ss_pred             H-------------------------------H-HHHHHHHHcCcCcccEEEeCCCCCC-CHHHHHHHHhCCCEEEeCC
Confidence            1                               1 22344444454   44688985 33 3488889999999888763

>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*

Probab=98.66  E-value=7.1e-08  Score=86.29  Aligned_cols=148  Identities=16%  Similarity=0.114  Sum_probs=74.1

Q ss_pred             ccccccccccCCCCCC--CCh------hhHHH---HHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccc
Q 020079          106 GGIDPHTHLAMEFMGS--ETI------DDFFS---GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF  173 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--~~~------~~~~~---~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (331)
                      ||||+|+|+.......  ..+      ++...   ..+.+.++|||++++....... ......+..++.+.+.....++
T Consensus        17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~   96 (314)
T 2vc7_A           17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGI   96 (314)
T ss_dssp             CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEB
T ss_pred             CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeec
Confidence            9999999997631110  011      11111   2355778999999988644222 2333333233222233333333


Q ss_pred             ccccc--CC-ChhhHHHHHHHHH---HhCCC-------eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC-C-c
Q 020079          174 HMAIT--KW-DEVVSDEMEVMVK---EKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-N-G  238 (331)
Q Consensus       174 ~~~~~--~~-~~~~~~~~~~~~~---~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e-~-~  238 (331)
                      +....  .. .+...+++.++..   ..|+.       .+++.+++........+.+++.++.|+++|+|+.+|+. . .
T Consensus        97 hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~~~~~~q~~~~~~~~~lA~~~~~pv~iH~~~~~~  176 (314)
T 2vc7_A           97 YIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNN  176 (314)
T ss_dssp             CCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTTCSCHHHHHHHHHHHHHHHHHCCCEEEECCTTTT
T ss_pred             CCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHHCCEEEEeCCCccc
Confidence            33111  11 0112344444432   12322       23444444322222235688899999999999999985 2 3


Q ss_pred             hhhHHHHHHHHHcCCC
Q 020079          239 DAVFEGQKRMIELGIT  254 (331)
Q Consensus       239 ~~~~~~~~~~~~~G~~  254 (331)
                      .. .+..+.+.+.|+.
T Consensus       177 ~~-~~~~~~l~~~~~~  191 (314)
T 2vc7_A          177 TG-LEQQRILTEEGVD  191 (314)
T ss_dssp             HH-HHHHHHHHHTTCC
T ss_pred             Ch-HHHHHHHHHcCCC
Confidence            22 3444556666654

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12

Probab=98.63  E-value=1.1e-06  Score=76.35  Aligned_cols=125  Identities=17%  Similarity=0.132  Sum_probs=69.2

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  185 (331)
                      +||+|+|+....    ...+.....+.+.++||+++++.+... .+.... ....+..+......+++.... ...++..
T Consensus         5 ~iD~H~Hl~~~~----~~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~-~~l~~~~~~~~~~~G~hP~~~~~~~~~~~   78 (259)
T 1zzm_A            5 FIDTHCHFDFPP----FSGDEEASLQRAAQAGVGKIIVPATEA-ENFARV-LALAENYQPLYAALGLHPGMLEKHSDVSL   78 (259)
T ss_dssp             EEESCBCTTSTT----TTTCHHHHHHHHHHTTEEEEEEECCSG-GGHHHH-HHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred             EEEeeecCCchh----hccCHHHHHHHHHHcCCCEEEEecCCH-HHHHHH-HHHHHhCCCeEEEEEecccccccCCHHHH
Confidence            899999998651    122344446678889999998764322 222222 222233333222333332211 1223456


Q ss_pred             HHHHHHHHH--hCCCeEEE-EEecCCC---CcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKE--KGINSFKF-FMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~--~g~~~ik~-~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++++++..+  .++.+++. .++++..   .....+.+++.++.|+++|+|+.+|+.+
T Consensus        79 ~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~  136 (259)
T 1zzm_A           79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR  136 (259)
T ss_dssp             HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             HHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecc
Confidence            777776644  23334422 2333211   1123457889999999999999999854

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}

Probab=98.46  E-value=5.4e-06  Score=73.02  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=72.5

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc----ceeeccccccc-cCCC
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN----SCMDYGFHMAI-TKWD  181 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~  181 (331)
                      |||+|+|+....    ..++.....+.+.+.||..++..+... .+....+ .+.+..+.    ....++++... ....
T Consensus         3 ~iD~H~HL~~~~----~~~d~~~vl~~a~~~gV~~~v~~g~~~-~~~~~~~-~la~~~~~~~~~v~~~~GiHP~~~~~~~   76 (287)
T 3rcm_A            3 LIDIGVNLTNSS----FHDQQAAIVERALEAGVTQMLLTGTSL-AVSEQAL-ELCQQLDASGAHLFATAGVHPHDAKAWD   76 (287)
T ss_dssp             EEEEEECTTCGG----GTTCHHHHHHHHHHTTEEEEEECCCSH-HHHHHHH-HHHHHHCTTSSSEEEEECCCGGGGGGCC
T ss_pred             eEEEeecCCchh----cccCHHHHHHHHHHcCCeEEEEecCCH-HHHHHHH-HHHHhCCCCCceEEEEEEECcCccccCC
Confidence            799999998641    123455557778899999887553211 1222222 22222232    33444444322 2223


Q ss_pred             hhhHHHHHHHHHHhCCCeEEEE-EecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFF-MAYKGSF---MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~-~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++.+++++++++...+.+|... +++....   ....+.|++.++.|+++++|+.+|+.+
T Consensus        77 ~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~  136 (287)
T 3rcm_A           77 TDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERD  136 (287)
T ss_dssp             TTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence            4556777777733444555433 4443211   113567899999999999999999854

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12

Probab=98.42  E-value=9.2e-06  Score=70.53  Aligned_cols=125  Identities=10%  Similarity=0.117  Sum_probs=66.6

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccc-cCCChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  185 (331)
                      +||+|+|+....    ...+.....+.+.++||+++++..... ..... +....+..+......+++... ....++..
T Consensus         5 ~iD~H~Hl~~~~----~~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~-~~~l~~~~~~i~~~~G~hP~~~~~~~~~~~   78 (264)
T 1xwy_A            5 MFDIGVNLTSSQ----FAKDRDDVVACAFDAGVNGLLITGTNL-RESQQ-AQKLARQYSSCWSTAGVHPHDSSQWQAATE   78 (264)
T ss_dssp             CEEEEECTTSGG----GTTTHHHHHHHHHHTTCCEEEECCCSH-HHHHH-HHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred             EEEEeeCCCChh----hccCHHHHHHHHHHCCCCEEEEeCCCH-HHHHH-HHHHHHhCCCEEEEEEECCcccccCCHHHH
Confidence            899999997641    112344445667889999988764321 11222 222222222222222333211 11223455


Q ss_pred             HHHHHHHHHhCCCeEEE-EEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGINSFKF-FMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~-~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++++++.+..++.+++. .+++....   ....+.+++.++.|+++|+|+.+|+.+
T Consensus        79 ~~l~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~  134 (264)
T 1xwy_A           79 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRD  134 (264)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             HHHHHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCC
Confidence            66777663333444433 23332111   111346889999999999999999843

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}

Probab=98.40  E-value=1.7e-05  Score=69.18  Aligned_cols=126  Identities=14%  Similarity=0.090  Sum_probs=69.7

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc-cceeeccccccc-cC----
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAI-TK----  179 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~----  179 (331)
                      ++||+|+|+....    ...+.....+.+.++||+++++.+... .+.....+ ..+..+ +.....+++... ..    
T Consensus         5 ~~iD~H~Hl~~~~----~~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~~~-l~~~~~~~i~~~~GihP~~~~~~~~~   78 (272)
T 2y1h_A            5 GLVDCHCHLSAPD----FDRDLDDVLEKAKKANVVALVAVAEHS-GEFEKIMQ-LSERYNGFVLPCLGVHPVQGLPPEDQ   78 (272)
T ss_dssp             CEEEEEECTTSGG----GTTTHHHHHHHHHHTTEEEEEECCSSG-GGHHHHHH-HHHHTTTTEEEEECCCSBC-------
T ss_pred             cEEEEeeCCCchh----hhcCHHHHHHHHHHCCCCEEEEeCCCH-HHHHHHHH-HHHHCCCCEEEEEEECCCcccccccc
Confidence            5999999998641    112344446677889999998775432 12222222 223333 233333444322 11    


Q ss_pred             --CChhhHHHHHHHHHH--hCCCeEEEE-EecCCCC-------cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          180 --WDEVVSDEMEVMVKE--KGINSFKFF-MAYKGSF-------MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       180 --~~~~~~~~~~~~~~~--~g~~~ik~~-~~~~~~~-------~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                        ...+.++++.+++.+  ..+.+++.. ++++...       ....+.|++.++.|+++|+|+.+|+.+
T Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~  148 (272)
T 2y1h_A           79 RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRS  148 (272)
T ss_dssp             CBCCHHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred             ccCCHHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence              122345666666633  244555432 2221111       112457889999999999999999854

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}

Probab=98.26  E-value=1.3e-05  Score=71.62  Aligned_cols=130  Identities=13%  Similarity=-0.011  Sum_probs=73.3

Q ss_pred             ccccccccccCCCC-C-----CCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc-----cceeecccc
Q 020079          106 GGIDPHTHLAMEFM-G-----SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-----NSCMDYGFH  174 (331)
Q Consensus       106 G~ID~H~H~~~~~~-~-----~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  174 (331)
                      -|||+|+|+..+.. +     ....++.......+.+.||..++..+... .+....++ +.+..+     .....++++
T Consensus        27 ~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~-~~~~~~~~-La~~~~~~~~~~v~~~~GiH  104 (325)
T 3ipw_A           27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCL-NDFKKAIE-IINKYQNLTNIKLVTTIGVH  104 (325)
T ss_dssp             CEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSH-HHHHHHHH-HHHHHGGGCSSEEEEEECCC
T ss_pred             CeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCH-HHHHHHHH-HHHHCCCcccceEEEEEEEC
Confidence            58999999987521 1     01134555667788899999988654321 12222222 222333     334444444


Q ss_pred             cccc-CCChh-hHHHHHHHHHHh--CCCeEEE-EEecCCCC----cCCHHHHHHHHHHHHH-cCCcEEEEcCC
Q 020079          175 MAIT-KWDEV-VSDEMEVMVKEK--GINSFKF-FMAYKGSF----MINDELLIEGFKRCKS-LGALAMVHAEN  237 (331)
Q Consensus       175 ~~~~-~~~~~-~~~~~~~~~~~~--g~~~ik~-~~~~~~~~----~~~~~~l~~~~~~A~~-~g~~v~~H~e~  237 (331)
                      .... ...++ .+++++++++..  .+.+|.. .+++....    ....+.|++.+++|++ +++|+.+|+.+
T Consensus       105 P~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~  177 (325)
T 3ipw_A          105 PTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRK  177 (325)
T ss_dssp             GGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEES
T ss_pred             cchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCc
Confidence            3221 12222 567777777432  3444433 33432111    1124678899999999 99999999854

>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}

Probab=98.24  E-value=1.3e-05  Score=70.94  Aligned_cols=127  Identities=13%  Similarity=-0.008  Sum_probs=69.2

Q ss_pred             eecccccccccccCCCCC-----CCC---hhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceee-cc
Q 020079          103 VMPGGIDPHTHLAMEFMG-----SET---IDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMD-YG  172 (331)
Q Consensus       103 v~PG~ID~H~H~~~~~~~-----~~~---~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~  172 (331)
                      +=|++||+|+|+...-..     ...   ..+.......+-+.||..++-....... .....++..+ ..+..... ..
T Consensus        23 ~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~-~~p~r~~g~~~  101 (294)
T 4i6k_A           23 MKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQ-QYPDRLKGIAV  101 (294)
T ss_dssp             --CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHH-HSTTTEEEEEC
T ss_pred             CCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHH-HCCCeEEEEEE
Confidence            445789999999864110     000   2334444666778999887744321111 1111222222 22211111 11


Q ss_pred             ccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++.      ....++++++. +.|+.+++.............+.+...++.|+++|+++.+|+..
T Consensus       102 v~P------~~~~~eL~~l~-~~gv~Gi~l~~~~~~~~~~~~~~~~~~~~~a~~~glpv~iH~~~  159 (294)
T 4i6k_A          102 VQH------TTTFNELVNLK-AQGIVGVRLNLFGLNLPALNTPDWQKFLRNVESLNWQVELHAPP  159 (294)
T ss_dssp             CCT------TCCHHHHHHHH-TTTEEEEEEECTTSCCCCSSSHHHHHHHHHHHHTTCEEEEECCH
T ss_pred             eCC------cccHHHHHHHH-HCCCcEEEeccCCCCCCCcccHHHHHHHHHHHHcCCEEEEeeCc
Confidence            111      11235666666 56888888544222222346689999999999999999999853

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0

Probab=98.12  E-value=4.4e-06  Score=72.16  Aligned_cols=119  Identities=13%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD  186 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (331)
                      +||+|+|+...       ++.......+.+.||..+.-  +....+....+ .+.+..+.....++++........+.++
T Consensus         3 liDtH~HL~~~-------~d~~~vl~~a~~~gV~~i~v--~~~~~~~~~~~-~la~~~~~v~~~~GiHP~~~~~~~~~l~   72 (254)
T 3gg7_A            3 LIDFHVHLDLY-------PDPVAVARACEERQLTVLSV--TTTPAAWRGTL-ALAAGRPHVWTALGFHPEVVSERAADLP   72 (254)
T ss_dssp             CEEEEECGGGS-------SSHHHHHHHHHHTTCEEEEC--CSSGGGHHHHH-GGGTTCTTEEECBCCCGGGTTTTGGGTH
T ss_pred             eEEEeeCCCCC-------CCHHHHHHHHHHCCCcEEEe--cCCHHHHHHHH-HHHHhCCCeEEEEeeCcccccccHHHHH
Confidence            89999999854       24444466778899988662  22222222222 2222223334444555432222224455


Q ss_pred             HHHHHHHHhCCCeEEE-EEecCC----CCcCCHHHHHHHHHHHHHcCCcEE-EEcCC
Q 020079          187 EMEVMVKEKGINSFKF-FMAYKG----SFMINDELLIEGFKRCKSLGALAM-VHAEN  237 (331)
Q Consensus       187 ~~~~~~~~~g~~~ik~-~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~-~H~e~  237 (331)
                      .+.++. . .+..|.. .+++..    ......+.|++.+++|+++++|+. +|+.+
T Consensus        73 ~l~~~~-~-~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~  127 (254)
T 3gg7_A           73 WFDRYL-P-ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRR  127 (254)
T ss_dssp             HHHHHG-G-GCSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             HHHHHh-h-hccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            666665 2 2344433 223221    111234668899999999999998 99864

>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}

Probab=98.07  E-value=8.1e-05  Score=64.51  Aligned_cols=164  Identities=15%  Similarity=0.089  Sum_probs=86.8

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--cHH---HHHHHHHH-------Hh-ccceeeccc
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLT---AGFEAYEK-------KA-KNSCMDYGF  173 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~---~~~~~~~~-------~~-~~~~~~~~~  173 (331)
                      |||+|+|+...  .   .+    ..+.+..+||+.++..+.....  ...   +..+...+       .. ...+..+++
T Consensus         2 ~iDtH~Hld~~--~---~~----~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~v~~~~Gi   72 (261)
T 3guw_A            2 YFDSHLHSEGL--G---FS----ELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGI   72 (261)
T ss_dssp             CCBCCCCGGGC--C---HH----HHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTTTCEECCBCCC
T ss_pred             eEEeccCCCCC--C---hH----HHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Confidence            79999999864  1   12    2456788999998855432211  111   11222211       11 122333444


Q ss_pred             cccccCCChhhHHHHHHHHHHhCCCeEEEE-EecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079          174 HMAITKWDEVVSDEMEVMVKEKGINSFKFF-MAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG  252 (331)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G  252 (331)
                      +.....  +. .++..+..++..+.+|... +++.  .....+.|++.+++|+++++|+.+|+......           
T Consensus        73 HP~~~~--~~-~~~~~~~l~~~~vvaIGEiGLD~~--~~~Q~~~f~~ql~lA~e~~lPv~iH~r~~~~~-----------  136 (261)
T 3guw_A           73 HPRCIP--PD-YEFVLGYLEEGEWVAFGEIGLELV--TDEEIEVLKSQLELAKRMDVPCIIHTPRGNKL-----------  136 (261)
T ss_dssp             CGGGCC--TT-THHHHHHHTTSCCSCEEEEECSSC--CHHHHHHHHHHHHHHHHHTCCEEEECCSSSTT-----------
T ss_pred             Cccccc--cc-HHHHHHHhCcCCeEEEEEecCCCC--hHHHHHHHHHHHHHHHHhCCeEEEEcCCCccc-----------
Confidence            432211  11 1222233323455566433 3322  12235578999999999999999998643100           


Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHhcCC---CEEEEeCCCHHHHHHHHHHHHcCCCEEEecCC
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNT---PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~---~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p  316 (331)
                                       .+..+.++++++.+.   +..+.||+    .+.++++.+.|..++..++|
T Consensus       137 -----------------~a~~~~~~il~~~~~~~~~~vi~H~~----~~~a~~~l~~G~yis~~~~p  182 (261)
T 3guw_A          137 -----------------KATRKTLEILESLDFPADLAVIDHVN----FETLDMVLETEYWIGLTVQP  182 (261)
T ss_dssp             -----------------HHHHHHHHHHHHTTCCTTSEEEESCC----TTTHHHHHTSSSEEEEECC-
T ss_pred             -----------------chHHHHHHHHHHcCCCCCCEEEEeCC----HHHHHHHHhCCEEEEecCCC
Confidence                             122334455555543   35577883    25567777889888876443

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12

Probab=97.99  E-value=7e-05  Score=64.82  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD  186 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (331)
                      +||+|+|+....... ...+.....+.+.+.||+.++..... . ...+.+....+..+......+++.... ......+
T Consensus         3 ~iD~H~Hl~~~~~~~-~~~~~~~~l~~~~~~Gv~~~v~~~~~-~-~~~~~~~~~~~~~p~~~~~~g~hP~~~-~~~~~~~   78 (265)
T 1yix_A            3 LVDSHCHLDGLDYES-LHKDVDDVLAKAAARDVKFCLAVATT-L-PSYLHMRDLVGERDNVVFSCGVHPLNQ-NDPYDVE   78 (265)
T ss_dssp             EEEEEECGGGSCTTT-TCSSHHHHHHHHHHTTEEEEEECCSS-H-HHHHHHHHHHCSCTTEEEEECCCTTCC-SSCCCHH
T ss_pred             EEEEeeCCCchhhcc-cccCHHHHHHHHHHCCCCEEEEeCCC-H-HHHHHHHHHHHHCCCeEEEEEeCCCcc-cccchHH
Confidence            799999998652100 02234444666778999998765321 1 111112222212122111122221111 1001256


Q ss_pred             HHHHHHHHhCCCeEEE-EEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          187 EMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       187 ~~~~~~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      +++++.+...+..+.. .+....   ......+.+.+.++.|+++|+|+.+|+.
T Consensus        79 ~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~  132 (265)
T 1yix_A           79 DLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTR  132 (265)
T ss_dssp             HHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHhccCCeEEEEccccCCCcCCCChHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence            6766663222223322 122221   1122356788999999999999999984

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12

Probab=97.98  E-value=2.9e-05  Score=67.62  Aligned_cols=125  Identities=13%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccc-cCCChhh
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVV  184 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  184 (331)
                      -++|+|+|+....    ...+.....+.+.++||+.++......  ...+.+....+..+.....++++... ....++.
T Consensus        12 ~~~~~~~hl~~~~----~~~~~~~~l~~~~~~GV~~~v~~~~~~--~~~~~~~~l~~~~p~i~~~~G~hP~~~~~~~~~~   85 (268)
T 1j6o_A           12 HMVDTHAHLHFHQ----FDDDRNAVISSFEENNIEFVVNVGVNL--EDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDF   85 (268)
T ss_dssp             CEEEEEECTTSGG----GTTTHHHHHHTTTTTTEEEEEEECSSH--HHHHHHHHHHTTCTTEEEEECCCGGGGGGCCTTH
T ss_pred             cccccccCCCChh----hccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHHCCCEEEEEeeccccccccCHHH
Confidence            3689999998651    123444445667789999888654311  11122222222222222222222211 1112344


Q ss_pred             HHHHHHHHHHhCCCeEEE-EEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          185 SDEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      +++++++.+...+..++. .+....   ......+.+++.++.|+++|+|+.+|+.
T Consensus        86 ~~~l~~~~~~~~~~~iGe~Gld~~~~~~~~~~q~~~f~~~~~~a~~~~lPv~iH~~  141 (268)
T 1j6o_A           86 IEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIR  141 (268)
T ss_dssp             HHHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHHhccCCEEEEEccccCCcccCCChHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            566666652222223322 123221   1123467789999999999999999985

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}

Probab=97.93  E-value=1e-05  Score=71.81  Aligned_cols=130  Identities=10%  Similarity=0.016  Sum_probs=66.6

Q ss_pred             ccccccccccCCCCCC------CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC
Q 020079          106 GGIDPHTHLAMEFMGS------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK  179 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~------~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (331)
                      .+||+|+|+.......      ....+.....+.+.++||++++..+... .+. ..+....+..+......+++.....
T Consensus         2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~~-~~~-~~~~~la~~~~~v~~~~GiHP~~~~   79 (301)
T 2xio_A            2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNL-QDS-KDALHLAQTNGMFFSTVGCHPTRCG   79 (301)
T ss_dssp             CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCSH-HHH-HHHHHHHTTCTTEEEEECCCGGGTH
T ss_pred             eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCCH-HHH-HHHHHHHHHCCCEEEEEEECcChhh
Confidence            4899999997652110      0013444456677889999988764311 111 1111222222222222333321110


Q ss_pred             -C----ChhhHHHHHHHHHHh--CCCeEEE-EEecCCCC----cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          180 -W----DEVVSDEMEVMVKEK--GINSFKF-FMAYKGSF----MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       180 -~----~~~~~~~~~~~~~~~--g~~~ik~-~~~~~~~~----~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                       .    .++.++++++++++.  .+.+|+. .+++....    ....+.|++.++.|+++|+|+.+|+.+
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~  149 (301)
T 2xio_A           80 EFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRN  149 (301)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEES
T ss_pred             hCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecC
Confidence             0    113356666666332  2334433 23432101    112367889999999999999999843

>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*

Probab=97.89  E-value=0.0002  Score=64.87  Aligned_cols=203  Identities=13%  Similarity=0.066  Sum_probs=98.6

Q ss_pred             ccccccccccCCCCCC--------CChh-hH---HHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHH-Hhccceeecc
Q 020079          106 GGIDPHTHLAMEFMGS--------ETID-DF---FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK-KAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--------~~~~-~~---~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  172 (331)
                      |++++|-|+...+.+.        ...+ .+   ....+...+.|+.|++|.....-+.....+....+ .+-.....-+
T Consensus        52 G~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG  131 (360)
T 3tn4_A           52 GKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATG  131 (360)
T ss_dssp             CSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCc
Confidence            8899999975432111        1111 11   22334466799999999876655433333333322 2222222222


Q ss_pred             ccccccCCC---------hhhHHHHHHHH-H--HhCCC-------eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          173 FHMAITKWD---------EVVSDEMEVMV-K--EKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       173 ~~~~~~~~~---------~~~~~~~~~~~-~--~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      ++......+         ....+++.++. +  ..|++       .||+..+.........+.|++.+++|++.|+|+.+
T Consensus       132 ~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~i  211 (360)
T 3tn4_A          132 YYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIIT  211 (360)
T ss_dssp             CCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             cccCcccCCcccchhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence            221110000         00112222221 1  23332       35654433322222356689999999999999999


Q ss_pred             EcCCchhhHHHHHHHHHcCCCCccc---ccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC---------CHHHHHHHH
Q 020079          234 HAENGDAVFEGQKRMIELGITGPEG---HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------SMDAMEEIA  301 (331)
Q Consensus       234 H~e~~~~~~~~~~~~~~~G~~~~~~---~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~---------~~~~~~~i~  301 (331)
                      |........+..+.+.+.|....+.   |.+..+ ..      +.++.+.+.|+-+.+....         .....+.++
T Consensus       212 Ht~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~~~-d~------~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~  284 (360)
T 3tn4_A          212 HTQEGTMGPEQAAYLLEHGADPKKIVIGHMCDNT-DP------DYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLL  284 (360)
T ss_dssp             ECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCC-CH------HHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHH
T ss_pred             EcCcccCCHHHHHHHHHcCCCCCceEEEcCCCCC-CH------HHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHH
Confidence            9854433223445567777754432   321111 11      1122333456666555432         134456677


Q ss_pred             HHHHcCC--CEEEecC
Q 020079          302 KARKAGP--NFLNTTI  315 (331)
Q Consensus       302 ~~~~~Gi--~v~~~~~  315 (331)
                      ++.++|.  +|..++.
T Consensus       285 ~lv~~g~~drILLstD  300 (360)
T 3tn4_A          285 ALLRDGYEKQIMLSHD  300 (360)
T ss_dssp             HHHHTTCGGGEEECCC
T ss_pred             HHHHhcCcceEEEecC
Confidence            7777664  3555444

>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0

Probab=97.86  E-value=0.00012  Score=65.59  Aligned_cols=202  Identities=12%  Similarity=0.006  Sum_probs=98.2

Q ss_pred             ccccccccccCCCC----------CCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHH-HHhccceeecccc
Q 020079          106 GGIDPHTHLAMEFM----------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-KKAKNSCMDYGFH  174 (331)
Q Consensus       106 G~ID~H~H~~~~~~----------~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  174 (331)
                      |++.+|=|+.....          .....+......+...+.|++|++|+....-+.....+.... +.+.+....-+++
T Consensus        17 G~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y   96 (330)
T 3pnz_A           17 GFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFN   96 (330)
T ss_dssp             CSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECC
T ss_pred             CCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCC
Confidence            78888999865310          011223344455667789999999997554443333333332 2332222222222


Q ss_pred             cccc--------------------C-----CChhhHHHHHHHHHHhCC-----Ce--EEEEEecCCCCcCCHHHHHHHHH
Q 020079          175 MAIT--------------------K-----WDEVVSDEMEVMVKEKGI-----NS--FKFFMAYKGSFMINDELLIEGFK  222 (331)
Q Consensus       175 ~~~~--------------------~-----~~~~~~~~~~~~~~~~g~-----~~--ik~~~~~~~~~~~~~~~l~~~~~  222 (331)
                      ....                    .     ..++..+.+.+-+ ..|+     ..  +++.++++.......+.|++.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~t~vkaGvIEiGld~~~~~~~q~~~f~aq~~  175 (330)
T 3pnz_A           97 KSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEV-ENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVAR  175 (330)
T ss_dssp             CGGGGGSBCCGGGHHHHCSCSBHHHHHHTSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccCchhhccCCHHHHHHHHHHHH-HhhCCCcCcCcCeEEEEcCCCCCCHHHHHHHHHHHH
Confidence            1100                    0     0111112222222 2333     22  56655554333334567889999


Q ss_pred             HHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc---ccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------
Q 020079          223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG---HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------  293 (331)
Q Consensus       223 ~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~---~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------  293 (331)
                      .|++.|+|+.+|+.......+..+.+.+.|......   |+...+ ..+      .+..+.+.|.-+.+....+      
T Consensus       176 ~A~~~glPViiH~r~g~~a~~~l~iL~e~~~~~~~vvi~H~~~s~-~~e------~a~~~l~~G~~i~~~g~~t~~~~~~  248 (330)
T 3pnz_A          176 AHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNL-DPY------YHKQVAKTGAFMSFDGIAKIKYAPE  248 (330)
T ss_dssp             HHHHHCCCEEEECGGGCCHHHHHHHHHHTTCCGGGEEETTGGGSC-CHH------HHHHHHTTTCEEEECCTTCTTTCCH
T ss_pred             HHHHHCCeEEEeCCCCcChHHHHHHHHHcCCCCCeEEEecCCCCC-CHH------HHHHHHHcCcEEEEccCcccCCCCh
Confidence            999999999999854211122245566666543221   221111 111      1222334566555555432      


Q ss_pred             HHHHHHHHHHHHcCC--CEEEecC
Q 020079          294 MDAMEEIAKARKAGP--NFLNTTI  315 (331)
Q Consensus       294 ~~~~~~i~~~~~~Gi--~v~~~~~  315 (331)
                      ....+.++++.++|.  ++.+++.
T Consensus       249 ~~~~~~l~~lv~~g~~drilleTD  272 (330)
T 3pnz_A          249 SARIAAILYLVSEGFEDQILVSGD  272 (330)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCeEEEeCC
Confidence            223455666666663  3555544

>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}

Probab=97.85  E-value=0.00031  Score=61.01  Aligned_cols=51  Identities=14%  Similarity=-0.012  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCC
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAEN  237 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~  237 (331)
                      +..++++++.++.|..+++.+.-..   . ..+.+..+++.|+++ |+|+.+|+..
T Consensus       102 ~~~~el~~~~~~~g~~gi~~~g~~~---~-~~~~~~~~~~~a~~~~~lpv~iH~~~  153 (272)
T 3cjp_A          102 DTNSYIEENIVNNKLVGIGELTPAS---G-QIKSLKPIFKYSMDSGSLPIWIHAFN  153 (272)
T ss_dssp             HHHHHHHHHTTTTTCSEEEEECCCT---T-CGGGGHHHHHHHHHTTCCCEEECCST
T ss_pred             HHHHHHHHHHHhcCceEEEecCCCC---C-ccHHHHHHHHHHHhccCCcEEEeCCC
Confidence            4566777766456888887653221   2 567899999999999 9999999864

>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*

Probab=97.85  E-value=0.00033  Score=63.51  Aligned_cols=147  Identities=19%  Similarity=0.124  Sum_probs=77.5

Q ss_pred             ccccccccccCCCC---------CCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHH----hccceeecc
Q 020079          106 GGIDPHTHLAMEFM---------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~---------~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  172 (331)
                      |++.+|=|+...+.         .....+......+.+.+.|++|++|.....-+.....+....+.    +-.....-+
T Consensus        21 G~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~is~~t~~~Gv~Iv~~TG  100 (363)
T 3ovg_A           21 GITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEIANAVKNLGGNVIMSTG  100 (363)
T ss_dssp             CEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHHHHhcccCCcEEEEeCC
Confidence            88899999865321         11223344445556678999999998755444333334433333    233222222


Q ss_pred             cccccc-----C-----CChhhHHHHHHHHHHhCC-----------------CeEEEEEecCCCCcCCHHHHHHHHHHHH
Q 020079          173 FHMAIT-----K-----WDEVVSDEMEVMVKEKGI-----------------NSFKFFMAYKGSFMINDELLIEGFKRCK  225 (331)
Q Consensus       173 ~~~~~~-----~-----~~~~~~~~~~~~~~~~g~-----------------~~ik~~~~~~~~~~~~~~~l~~~~~~A~  225 (331)
                      ++....     .     ..++..+.+.+-+ ..|+                 ..||+..+++.......+.|++.+++|+
T Consensus       101 ~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~~t~~Q~~~f~aq~~~A~  179 (363)
T 3ovg_A          101 FHKAKFYDKYSSWLAVVPTEEIVKMCVAEI-EEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSI  179 (363)
T ss_dssp             CCCGGGSCTTTSHHHHSCHHHHHHHHHHHH-HTCCBTTTTSSSCCCBCSCCCCEEEEEEEETBEEHHHHHHHHHHHHHHH
T ss_pred             CCcCcccccCcHhhhcCCHHHHHHHHHHHH-HhcccccccccccccCCCccCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            222111     0     0122222222222 2332                 2357666665333334567899999999


Q ss_pred             HcCCcEEEEcCC-chhhHHHHHHHHHcCCC
Q 020079          226 SLGALAMVHAEN-GDAVFEGQKRMIELGIT  254 (331)
Q Consensus       226 ~~g~~v~~H~e~-~~~~~~~~~~~~~~G~~  254 (331)
                      +.|+||.+|+.. .... +..+.+.+.|..
T Consensus       180 e~glPViiH~r~gr~a~-d~l~iL~e~g~~  208 (363)
T 3ovg_A          180 LTGCPILVHTQLGTMAL-EVAKHLIGFGAN  208 (363)
T ss_dssp             HHCCCEEEEEETTCSHH-HHHHHHHHHTCC
T ss_pred             HhCCEEEEeCCCCCCHH-HHHHHHHhcCCC
Confidence            999999999853 2222 333445555543

>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15

Probab=97.75  E-value=5.2e-05  Score=66.52  Aligned_cols=125  Identities=10%  Similarity=0.036  Sum_probs=68.3

Q ss_pred             ccccccccccCCCC----C----CCChhhHHHHHHHHHhCCceEEecCcCC-CCCcHHHHHHHHHHHhccceeecccccc
Q 020079          106 GGIDPHTHLAMEFM----G----SETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHMA  176 (331)
Q Consensus       106 G~ID~H~H~~~~~~----~----~~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (331)
                      ++||+|+|+..+..    +    .....+.....+.+-+.||+..+-.... ........++..+ ..+.-...+   ..
T Consensus        13 ~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~~~-~~p~r~~~~---~~   88 (288)
T 2ffi_A           13 TAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQ-TVPGQLRGV---VM   88 (288)
T ss_dssp             CCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHH-HSTTTBCCB---BC
T ss_pred             CceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHHHH-HCCCCEEEE---EE
Confidence            68999999975410    0    0001223333555667999976644321 1111222222222 222101111   11


Q ss_pred             ccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          177 ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +.  +....++++++. +.|..++++...+.+....+++.+..+++.|+++|+++.+|+..
T Consensus        89 v~--p~~~~~el~~~~-~~g~~Gi~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~  146 (288)
T 2ffi_A           89 LE--RDVEQATLAEMA-RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQV  146 (288)
T ss_dssp             CC--SSCCHHHHHHHH-TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCT
T ss_pred             eC--CCCCHHHHHHHH-HCCCeEEEEecccCCCCCcccHHHHHHHHHHHHCCCeEEEeech
Confidence            11  111135677766 56888887765543223456678999999999999999999854

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=97.74  E-value=0.00034  Score=60.38  Aligned_cols=125  Identities=16%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccc-cCCChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  185 (331)
                      +||+|+|+....    ...+.....+.+.+.||+.++......  ...+.+....+..+......+++... ....++..
T Consensus         2 ~iD~H~Hl~~~~----~~~~~~~~l~~~~~~Gv~~~v~~~~~~--~~~~~~~~~~~~~p~~~~~~g~~P~~~~~~~~~~~   75 (265)
T 2gzx_A            2 LIDTHVHLNDEQ----YDDDLSEVITRAREAGVDRMFVVGFNK--STIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHL   75 (265)
T ss_dssp             CEEEEECTTSGG----GTTTHHHHHHHHHHTTCCEEEEEECSH--HHHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred             eEEEeeCCCCcc----cccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCEEEEEEeccCccccCCHHHH
Confidence            699999997641    112344445667789998877654321  11122222222222211111222111 11112345


Q ss_pred             HHHHHHHHHhCCCeEEEE-EecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGINSFKFF-MAYKG---SFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~~-~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++++++.+..++.+++.. +....   ......+.+.+.++.|+++|+|+.+|+..
T Consensus        76 ~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~  131 (265)
T 2gzx_A           76 EWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNRE  131 (265)
T ss_dssp             HHHHHHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             HHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            666665522233344322 22211   11234567899999999999999999853

>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}

Probab=97.74  E-value=0.0004  Score=63.10  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc-cceeeccccccccC---CChhhHHHHHHHHHH---hCC--
Q 020079          127 FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAITK---WDEVVSDEMEVMVKE---KGI--  197 (331)
Q Consensus       127 ~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~g~--  197 (331)
                      .....+.+.++||+++++............+.+..+... ......+++.....   ......+++.++..+   .|+  
T Consensus        88 ~~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~Gi~~  167 (364)
T 3k2g_A           88 AIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLASSMPETAARLSADDIADEIVAEALEGTDG  167 (364)
T ss_dssp             HHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHTCBTT
T ss_pred             HHHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHhcccc
Confidence            334556678899999999874322222333333333322 33333344311110   011123444333211   222  


Q ss_pred             -----CeEE-EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          198 -----NSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       198 -----~~ik-~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                           ..|+ +.+++ .......+.|++.++.|++.|+||.+|+.
T Consensus       168 ~~vkag~IGEiGld~-~~t~~q~~~f~aq~~~A~~~glPV~iH~~  211 (364)
T 3k2g_A          168 TDARIGLIGEIGVSS-DFTAEEEKSLRGAARAQVRTGLPLMVHLP  211 (364)
T ss_dssp             BSCCCSSEEEEECCT-TCCHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred             CCcceeEEEEEEcCC-CCCHHHHHHHHHHHHHHHHHCCeEEEecC
Confidence                 1243 33333 11122345688899999999999999984

>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*

Probab=97.73  E-value=0.0003  Score=63.35  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=74.5

Q ss_pred             ccccccccccCCCCCC--------CCh-hhH---HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecc
Q 020079          106 GGIDPHTHLAMEFMGS--------ETI-DDF---FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--------~~~-~~~---~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (331)
                      |++.+|=|+.....+.        ... +++   ....+.+.++||+++++....... +.....+..++.+...+...+
T Consensus        32 G~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG  111 (339)
T 3gtx_A           32 GATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATG  111 (339)
T ss_dssp             CEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEEC
T ss_pred             CCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcC
Confidence            8888899985432111        111 122   234455788999999988643222 333333323322323333334


Q ss_pred             ccccc------cCCC---hhhHHHHHHHHHH---hCC-------CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          173 FHMAI------TKWD---EVVSDEMEVMVKE---KGI-------NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       173 ~~~~~------~~~~---~~~~~~~~~~~~~---~g~-------~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      ++...      ....   ....+++.++..+   .|+       ..+++.++++.......+.|++.++.|++.|+|+.+
T Consensus       112 ~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~~~~~~q~~~f~aq~~lA~~~glPVii  191 (339)
T 3gtx_A          112 FYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIIT  191 (339)
T ss_dssp             CCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence            43310      0000   0123445443322   121       234666666533223355788899999999999999


Q ss_pred             EcCC-chhhHHHHHHHHHcCCC
Q 020079          234 HAEN-GDAVFEGQKRMIELGIT  254 (331)
Q Consensus       234 H~e~-~~~~~~~~~~~~~~G~~  254 (331)
                      |+.. .... +..+.+.+.|..
T Consensus       192 H~~~gr~a~-~~~~iL~~~~~~  212 (339)
T 3gtx_A          192 HTQEGQQGP-QQAELLTSLGAD  212 (339)
T ss_dssp             ECSTTCCHH-HHHHHHHHTTCC
T ss_pred             eCCCCcCHH-HHHHHHHHcCCC
Confidence            9843 2222 234445555543

>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}

Probab=97.60  E-value=0.0011  Score=60.19  Aligned_cols=22  Identities=14%  Similarity=-0.080  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHc-CCcEEEEc
Q 020079          214 DELLIEGFKRCKSL-GALAMVHA  235 (331)
Q Consensus       214 ~~~l~~~~~~A~~~-g~~v~~H~  235 (331)
                      .+.|++.++.|++. |+||.+|+
T Consensus       178 ~~~f~aq~~~A~~~~glPV~iH~  200 (365)
T 3rhg_A          178 KNSLRAAALAQNNNPYASMNIHM  200 (365)
T ss_dssp             HHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEC
Confidence            45688899999999 99999997

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*

Probab=97.58  E-value=0.00011  Score=65.51  Aligned_cols=55  Identities=11%  Similarity=0.070  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCC-----CCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +..++++++.++.|..++++...+..     ....+++.+..+++.|+++|+++.+|+..
T Consensus       108 ~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~  167 (327)
T 2dvt_A          108 AATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN  167 (327)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHcCCeEEECCCC
Confidence            46788888875569999987655431     23456788999999999999999999854

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0

Probab=97.53  E-value=0.0014  Score=59.05  Aligned_cols=122  Identities=13%  Similarity=0.031  Sum_probs=72.5

Q ss_pred             CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHH
Q 020079          196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA  275 (331)
Q Consensus       196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~  275 (331)
                      ++.++.+...   ....+.+.+.++++.|++.|+++++|+..........+.+...|... -+|+......      .+.
T Consensus       164 ~vvG~dL~g~---E~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~r-IgHgv~l~~d------~~l  233 (343)
T 3rys_A          164 PIAGIGLDSA---EVGNPPSKFERLYQRAAEAGLRRIAHAGEEGPASYITEALDVLHVER-IDHGIRCMED------TDV  233 (343)
T ss_dssp             CCCEEEEESC---CTTCCGGGGHHHHHHHHHTTCEEEEEESSSSCHHHHHHHHHTSCCSE-EEECGGGGGC------HHH
T ss_pred             CEEEEecCCc---ccCCCHHHHHHHHHHHHHCCCeEEEeeCCCCCHHHHHHHHhcCCcce-eeeeeeecCC------hHH
Confidence            4555554322   23446788999999999999999999843322333223333344322 2344322110      245


Q ss_pred             HHHHHhcCCCEEEEeCCCHH-------HHHHHHHHHHcCCCEEEecC-Cccccchhhhhhh
Q 020079          276 IRLAEFVNTPLYVVHVMSMD-------AMEEIAKARKAGPNFLNTTI-PLCDSCSNIIRMV  328 (331)
Q Consensus       276 ~~l~~~~g~~~~i~H~~~~~-------~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~~~~~  328 (331)
                      ++++++.++.+.+|..|+..       ...+++++.++|++|+.+|. |-.... ++...+
T Consensus       234 ~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~-~l~~E~  293 (343)
T 3rys_A          234 VQRLVAEQVPLTVCPLSNVRLRAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGG-YVDDNF  293 (343)
T ss_dssp             HHHHHHHTCCEEECHHHHHHTTSSSCGGGCSHHHHHHTTCCEEECCBSTTTTTC-CHHHHH
T ss_pred             HHHHHhcCCCeeEchhHHHHhCCCCCcccchHHHHHHCCCeEEEeCCCccccCC-CHHHHH
Confidence            67778888887666654321       22478999999999998776 333332 555444

>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*

Probab=97.47  E-value=0.00021  Score=63.96  Aligned_cols=123  Identities=13%  Similarity=0.004  Sum_probs=72.9

Q ss_pred             CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHH
Q 020079          196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA  275 (331)
Q Consensus       196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~  275 (331)
                      ++.++.+....   ...+.+.++++++.|++.|+++++|+..........+.+...|... -+|+......      .+.
T Consensus       161 ~vvG~dL~g~E---~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~r-igHgv~l~~d------~~l  230 (326)
T 3pao_A          161 AFIAVGLDSSE---VGHPPSKFQRVFDRARSEGFLTVAHAGEEGPPEYIWEALDLLKVER-IDHGVRAFED------ERL  230 (326)
T ss_dssp             GCSEEEEESCC---TTCCGGGGHHHHHHHHHTTCEECEEESSSSCHHHHHHHHHTTCCSS-EEECGGGGGC------HHH
T ss_pred             cceeeCCCCCC---CCCCHHHHHHHHHHHHHcCCceeeecCCCCCHHHHHHHHhcCCCce-eeeeeeeccc------HHH
Confidence            55566543221   2346788999999999999999999833222233333333344432 2444322111      345


Q ss_pred             HHHHHhcCCCEEEEeCCCHH-------HHHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079          276 IRLAEFVNTPLYVVHVMSMD-------AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV  328 (331)
Q Consensus       276 ~~l~~~~g~~~~i~H~~~~~-------~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~  328 (331)
                      ++++++.++.+.+|+.|+..       ...+++++.++|++|+.+|.--..+..++...+
T Consensus       231 ~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~~l~~e~  290 (326)
T 3pao_A          231 MRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSDDPAYFGGYVTENF  290 (326)
T ss_dssp             HHHHHHHTCCEEECHHHHHHTTSSSSGGGCCHHHHHHHTCCEEECCBSHHHHTCCHHHHH
T ss_pred             HHHHHHcCCeEEECchhHHHhCCCCCcccChHHHHHHCCCeEEEeCCCcccCCCCHHHHH
Confidence            67788889887766654321       234789999999999987763222222454444

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A

Probab=97.47  E-value=0.00023  Score=65.02  Aligned_cols=108  Identities=18%  Similarity=0.033  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEc-CCc-hhh-HHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          214 DELLIEGFKRCKSLGALAMVHA-ENG-DAV-FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       214 ~~~l~~~~~~A~~~g~~v~~H~-e~~-~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ++.++++++.|+++|+++++|+ |.. ... ....+.+...|.. .-.|+......      ++.++++++.|+.+.+|+
T Consensus       214 ~~~~~~~~~~A~~~gl~~~~HagE~~~~~~~~~i~~al~~lg~~-ri~Hgv~l~~~------~~l~~~l~~~~i~v~~cP  286 (371)
T 2pgf_A          214 LKEYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVE-RIGHGIRVAES------QELIDMVKEKNILLEVCP  286 (371)
T ss_dssp             GGGGHHHHHHHHHTTCCBEEEESCCTTSSSSHHHHHHHHTSCCS-EEEECGGGGGC------HHHHHHHHHTTCEEEECH
T ss_pred             HHHHHHHHHHHHHcCCcEEEeeCCCCCCCchHHHHHHHhccCCC-EEecchhcccc------HHHHHHHHHcCCeEEECc
Confidence            7789999999999999999997 441 112 2222333323433 22444332211      234677788787655444


Q ss_pred             CCCHH-------HHHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079          291 VMSMD-------AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV  328 (331)
Q Consensus       291 ~~~~~-------~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~  328 (331)
                      .|+..       ....++++.++|++|+.+|.--..+..++.+.|
T Consensus       287 ~SN~~l~~~~~~~~~pi~~ll~~Gv~V~lgTD~~~~~~~~l~~e~  331 (371)
T 2pgf_A          287 ISNVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDPGMFLTNINDDY  331 (371)
T ss_dssp             HHHHHTTSSSCGGGCTHHHHHHTTCEEEECCBCHHHHTCCHHHHH
T ss_pred             chhHHhCCCCccccChHHHHHHCCCeEEEeCCCCcccCCCHHHHH
Confidence            43211       123799999999999988772222223554444

>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A

Probab=97.21  E-value=0.00082  Score=59.44  Aligned_cols=100  Identities=9%  Similarity=0.038  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCC-C-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGS-F-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL  261 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~-~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~  261 (331)
                      ..++++++. ..|+.+++....+... . ...++.+...++.++++|+++.+|+....                      
T Consensus        90 ~~~~L~~l~-~~gv~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~~~----------------------  146 (303)
T 4do7_A           90 LAERVAEWR-GTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFERQ----------------------  146 (303)
T ss_dssp             HHHHHTTCC-SSCEEEEECCGGGSSCHHHHHHCHHHHHHHHHHHHTTCEEEECCCGGG----------------------
T ss_pred             HHHHHHHHh-hcCceEEEecCcCCCCccccccCHHHHHHHHHHHHCCCeEEEecCHHH----------------------
Confidence            455666655 5677777754332211 1 23456788999999999999999975321                      


Q ss_pred             cCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCHH---------H----HHHHHHHHHcCCCEEEecCCc
Q 020079          262 SRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMD---------A----MEEIAKARKAGPNFLNTTIPL  317 (331)
Q Consensus       262 ~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~~---------~----~~~i~~~~~~Gi~v~~~~~p~  317 (331)
                                +.+..++++++ ++++.+.|+....         .    .+.+..+.+ .-||+++++-.
T Consensus       147 ----------l~~l~~ll~~~P~l~iVi~H~G~p~~~~~~~~~~~~~~w~~~l~~la~-~~nv~~klSg~  205 (303)
T 4do7_A          147 ----------LPDVQAFCARHDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELAA-LPHVVCKLSGL  205 (303)
T ss_dssp             ----------HHHHHHHHHHCCSSCEEEGGGGCCCGGGCC---CHHHHHHHHHHHHHT-STTEEEEECSC
T ss_pred             ----------HHHHHHHHHHCCCCCEEEeCCCCCCccccccccchHHHHHHHHHHHHh-CCCEEEEeCCc
Confidence                      11223555566 5899999986521         1    123444433 34899888743

>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15

Probab=97.20  E-value=0.0008  Score=59.32  Aligned_cols=55  Identities=9%  Similarity=0.168  Sum_probs=42.4

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++..++++++.++.|..++++...+.+ ...+++.+..+++.|+++|+++.+|+..
T Consensus       103 ~~~~~el~~~~~~~g~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~lpv~iH~~~  157 (307)
T 2f6k_A          103 LDAVKTVQQALDQDGALGVTVPTNSRG-LYFGSPVLERVYQELDARQAIVALHPNE  157 (307)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHTTTCEEEEECCC
T ss_pred             HHHHHHHHHHHhccCCcEEEEeccCCC-CCCCcHhHHHHHHHHHHcCCeEEECCCC
Confidence            456778888875579999987665433 2345678999999999999999999854

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.0027  Score=58.04  Aligned_cols=42  Identities=10%  Similarity=-0.130  Sum_probs=29.9

Q ss_pred             cccccccccccCCCCC------CCChhhHHHHHHHHHhCCceEEecCc
Q 020079          105 PGGIDPHTHLAMEFMG------SETIDDFFSGQAAALAGGTTMHIDFV  146 (331)
Q Consensus       105 PG~ID~H~H~~~~~~~------~~~~~~~~~~~~~~l~~GvTtv~d~~  146 (331)
                      +-|||+|+|+..+...      ....+++......+...||+.++..+
T Consensus        12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g   59 (401)
T 3e2v_A           12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTG   59 (401)
T ss_dssp             CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC
T ss_pred             CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEec
Confidence            5699999999876221      12235666667888999999988554

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...

Probab=97.02  E-value=0.011  Score=53.54  Aligned_cols=94  Identities=12%  Similarity=0.015  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079          215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM  294 (331)
Q Consensus       215 ~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~  294 (331)
                      +.+..+++.|++.|+++++|+..........+.+...|.. .-+|+......      .+.++++++.++.+.+|..|+.
T Consensus       192 ~~f~~~f~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~-RIgHgv~l~~d------~~l~~~l~~~~i~le~cP~SN~  264 (367)
T 3iar_A          192 PGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTE-RLGHGYHTLED------QALYNRLRQENMHFEICPWSSY  264 (367)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESSSSCHHHHHHHHHTSCCS-EEEECGGGGGC------HHHHHHHHHTTCEEEECHHHHH
T ss_pred             HHHHHHHHHHHHcCCeeEEecCCcCChHHHHHHHHccCCc-eeeeeeeecCC------HHHHHHHHhCCcEEEECHHHHH
Confidence            6889999999999999999983322223333333334432 22444322111      2356777787877666554431


Q ss_pred             H-------HHHHHHHHHHcCCCEEEecC
Q 020079          295 D-------AMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       295 ~-------~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      .       ....++++.++|++|+.+|.
T Consensus       265 ~l~~~~~~~~hPi~~ll~~Gv~v~l~TD  292 (367)
T 3iar_A          265 LTGAWKPDTEHAVIRLKNDQANYSLNTD  292 (367)
T ss_dssp             HTSSSCTTSCCHHHHHHHTTCCEEECCB
T ss_pred             HhCCCCCcccChHHHHHHCCCEEEECCC
Confidence            1       12479999999999998776

>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}

Probab=97.02  E-value=0.0082  Score=54.67  Aligned_cols=109  Identities=14%  Similarity=-0.016  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchh-hHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      .+.+.+..+++.|++.|+++.+|+..... .+...+.+...|.. +-+|+......      .+.++.+.+.++++.+|.
T Consensus       194 ~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~-RIgHG~~~~~d------~~L~~~l~~~~I~lEvCP  266 (380)
T 4gxw_A          194 RPPELFWKAYRDARAAGFRTTAHAGEFGMPWRNVETAVDLLHVD-RVDHGYTIVDN------PELCARYAERGIVFTVVP  266 (380)
T ss_dssp             CCGGGGHHHHHHHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCS-EEEECGGGGGC------HHHHHHHHHHTCEEEECT
T ss_pred             CCHHHHHHHHHHHHHcCCCeeeeccccCCchHHHHHHHHHcCCc-ccccceeeccC------hHHHHHHHHhCceeEECC
Confidence            35677899999999999999999843221 12222333333432 22344321111      234566777899999998


Q ss_pred             CCCH--------HHHH--HHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079          291 VMSM--------DAME--EIAKARKAGPNFLNTTIPLCDSCSNIIRM  327 (331)
Q Consensus       291 ~~~~--------~~~~--~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~  327 (331)
                      .|+-        ..++  +++.+.++|++|++.|.--..+.+++++.
T Consensus       267 ~SN~~l~~v~~~~~~~~HP~~~l~~~Gv~vtinTDDp~~f~t~Ls~E  313 (380)
T 4gxw_A          267 TNSYYLRTLPPDQWAERHPMRKMPGLGLKIHPNTDDPTLHKVNPSEA  313 (380)
T ss_dssp             TCHHHHHHSCTTTHHHHCGGGGTGGGTCEEEECCBSHHHHTCCHHHH
T ss_pred             cchhhhcccccccccccChHHHHHHCCCeEEECCCCchhhCCCHHHH
Confidence            8762        1123  58889999999998776444444444443

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=96.12  E-value=0.026  Score=48.62  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             cccccccccCCC-CCCCChhhHHHHHHHHHhCCceEEe
Q 020079          107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       107 ~ID~H~H~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      +||.|+|+..+. -|..+.++.....+.+.+.|++.+.
T Consensus         1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~   38 (262)
T 3qy7_A            1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTII   38 (262)
T ss_dssp             CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence            589999996421 2445666655668889999999987

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A

Probab=96.01  E-value=0.025  Score=49.46  Aligned_cols=55  Identities=13%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecC-CCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYK-GSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~-~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ++..+++++ +.+.|..++++..... .....+++.+..+++.|.++|+++.+|+..
T Consensus       105 ~~a~~eL~~-~~~~g~~Gi~~~~~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~  160 (291)
T 3irs_A          105 KEAMAQMQE-ILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGG  160 (291)
T ss_dssp             HHHHHHHHH-HHHTTCCCEEECGGGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSS
T ss_pred             HHHHHHHHH-HHhCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCC
Confidence            455677888 5478999998864432 123456788999999999999999999854

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A

Probab=95.91  E-value=0.069  Score=45.42  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             cccccccccccCCC-CCCCChhhHHHHHHHHHhCCceEEe
Q 020079          105 PGGIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       105 PG~ID~H~H~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      +|++|.|+|.-.+. .|..+.++.....+.+.+.|++.+.
T Consensus         3 ~~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~   42 (247)
T 2wje_A            3 MGMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIV   42 (247)
T ss_dssp             -CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence            46899999995432 2455667666778899999999887

>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}

Probab=95.64  E-value=0.039  Score=49.15  Aligned_cols=55  Identities=24%  Similarity=0.278  Sum_probs=42.7

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +...++++++.++.|..++++.....+ ...+++.+..+++.|.++|+++.+|+..
T Consensus       123 ~~a~~el~~~~~~~g~~Gv~l~~~~~~-~~l~d~~~~~~~~~~~e~~lpv~iH~~~  177 (336)
T 2wm1_A          123 ELAVKEMERCVKELGFPGVQIGTHVNE-WDLNAQELFPVYAAAERLKCSLFVHPWD  177 (336)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred             HHHHHHHHHHHHccCCeEEEECCcCCC-CCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence            356778888885579999987654433 3456788999999999999999999853

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=95.46  E-value=0.069  Score=47.49  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +...++++++. +.|..++++.....+ ...+++.+..+++.|.++|+++.+|+..
T Consensus       127 ~~a~~el~~~~-~~g~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~~lpv~iH~~~  180 (334)
T 2hbv_A          127 DLACKEASRAV-AAGHLGIQIGNHLGD-KDLDDATLEAFLTHCANEDIPILVHPWD  180 (334)
T ss_dssp             HHHHHHHHHHH-HHTCCCEEEESCBTT-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred             HHHHHHHHHHH-HcCCeEEEECCCCCC-CCCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence            35678888888 789999887654433 3457789999999999999999999854

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A

Probab=95.23  E-value=0.82  Score=38.84  Aligned_cols=52  Identities=15%  Similarity=-0.015  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCH-------HHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +.+.++.+.+.|..+.+.+.+..       .....++.+++.|++++++..-|+..-.+
T Consensus       174 ~~~~l~~~~~~g~~iEvn~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gSDaH~~~~~~  232 (267)
T 2yxo_A          174 AEPALRAVAEAGLFLDVNTAGLRRPAKEVYPAPALLRRARELGIGLVLGSDAHRPEEVG  232 (267)
T ss_dssp             HHHHHHHHHHHTCEEEEEGGGGGSTTCSCBSCHHHHHHHHHHTCCEEEECCBSSGGGTT
T ss_pred             HHHHHHHHHHcCCEEEEEchHhcCCCCCCCCCHHHHHHHHHcCCCEEEecCCCCHHHHH
Confidence            34455666667777777664321       12467888889999998888887765443

>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}

Probab=94.87  E-value=0.022  Score=50.47  Aligned_cols=55  Identities=13%  Similarity=0.125  Sum_probs=42.7

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +...++++++.++.|..++++.....+ ...+++.+..+++.+.++|+++.+|...
T Consensus       110 ~~a~~el~r~~~~~G~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~g~pv~iH~g~  164 (312)
T 3ij6_A          110 ESACKVISSIKDDENLVGAQIFTRHLG-KSIADKEFRPVLAQAAKLHVPLWMHPVF  164 (312)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEESEETT-EETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCceEeccCCCCC-CCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence            456788888875578888887654433 3456788999999999999999999743

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=94.43  E-value=0.25  Score=42.01  Aligned_cols=96  Identities=10%  Similarity=0.045  Sum_probs=53.0

Q ss_pred             HhCCCeEEEEEecC------C---CCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCcccccccC
Q 020079          194 EKGINSFKFFMAYK------G---SFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSR  263 (331)
Q Consensus       194 ~~g~~~ik~~~~~~------~---~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~  263 (331)
                      +.|.+.+.++....      +   ....+++.++++.+.++++|+.+..|. .....                       
T Consensus        33 ~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~-----------------------   89 (262)
T 3p6l_A           33 ELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVAEK-----------------------   89 (262)
T ss_dssp             HTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECCSS-----------------------
T ss_pred             HcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCCcc-----------------------
Confidence            67888776653210      0   223467777888888888888877663 21100                       


Q ss_pred             ChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCc
Q 020079          264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPL  317 (331)
Q Consensus       264 ~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~  317 (331)
                           ...+++.++++...|++..+.|.....--+..+.+++.|+.+..+..|.
T Consensus        90 -----~~~~~~~i~~A~~lGa~~v~~~~~~~~~~~l~~~a~~~gv~l~~En~~~  138 (262)
T 3p6l_A           90 -----SSDWEKMFKFAKAMDLEFITCEPALSDWDLVEKLSKQYNIKISVHNHPQ  138 (262)
T ss_dssp             -----TTHHHHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCEEEEECCSS
T ss_pred             -----HHHHHHHHHHHHHcCCCEEEecCCHHHHHHHHHHHHHhCCEEEEEeCCC
Confidence                 1224445566666666666666432211233444556666666665554

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=94.36  E-value=0.35  Score=40.98  Aligned_cols=40  Identities=10%  Similarity=0.001  Sum_probs=24.7

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH  234 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H  234 (331)
                      +.|.+++.++.. +-+...+++.++++.+.++++|+.+..+
T Consensus        41 ~~G~~~vEl~~~-~~~~~~~~~~~~~~~~~l~~~gl~i~~~   80 (257)
T 3lmz_A           41 RLDIHYLCIKDF-HLPLNSTDEQIRAFHDKCAAHKVTGYAV   80 (257)
T ss_dssp             HTTCCEEEECTT-TSCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HhCCCEEEEecc-cCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            667777765432 1122345667777777777777776655

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=94.04  E-value=1.5  Score=37.15  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             HHHHHhCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCC-cEEEEcCCchhhHHHHHHHHHcCCCCcccccccCCh
Q 020079          190 VMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGA-LAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP  265 (331)
Q Consensus       190 ~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~~g~-~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~  265 (331)
                      +.+.+.|.+.+.++.....   ....+++.++++.+.++++|+ .+.+|..-.-.            +..       .+.
T Consensus        21 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~h~~~~~~------------l~s-------~~~   81 (270)
T 3aam_A           21 EEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLPAVIHASYLVN------------LGA-------EGE   81 (270)
T ss_dssp             HHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEEEECCTTCC------------TTC-------SST
T ss_pred             HHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCceEEEecCcccC------------CCC-------CHH
Confidence            3333678888877543211   123457788888888999998 88888521000            000       000


Q ss_pred             --HHHHHHHHHHHHHHHhcCCCEEEEeCCC---H---HHHHH-HHHHH-HcCCCEEEecCC
Q 020079          266 --LLEGEATTRAIRLAEFVNTPLYVVHVMS---M---DAMEE-IAKAR-KAGPNFLNTTIP  316 (331)
Q Consensus       266 --~~e~~~i~~~~~l~~~~g~~~~i~H~~~---~---~~~~~-i~~~~-~~Gi~v~~~~~p  316 (331)
                        ......+.+.++++...|++..+.|...   .   +.+.. .+.++ +.|+.+..+..|
T Consensus        82 ~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~~~~~~~~~l~~l~~~a~~~~gv~l~lEn~~  142 (270)
T 3aam_A           82 LWEKSVASLADDLEKAALLGVEYVVVHPGSGRPERVKEGALKALRLAGVRSRPVLLVENTA  142 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCEEEECCCBSCHHHHHHHHHHHHHHHTCCSSSEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHhhcccCCCEEEEecCC
Confidence              1113456677788888888877777543   1   22222 23333 568888887765

>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}

Probab=94.02  E-value=0.27  Score=44.23  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=43.8

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG  238 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~  238 (331)
                      +...+++++++++.|..++++...+. ....+++.+..+++.+.++|++|.+|....
T Consensus       141 ~~a~~El~r~~~~~G~~Gv~l~~~~~-~~~~~d~~~~p~~~~~~e~g~pV~iH~g~~  196 (357)
T 3nur_A          141 EAAAREFERCINDLGFKGALIMGRAQ-DGFLDQDKYDIIFKTAENLDVPIYLHPAPV  196 (357)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEESCBT-TBCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred             HHHHHHHHHHHhhcCceEEEeCCCCC-CCCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence            45678888877568999999874333 234567889999999999999999998653

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A

Probab=92.59  E-value=0.46  Score=39.90  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=24.3

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      ++|.|+|...+..+..+++++   .+.+.+.|++.+.
T Consensus         3 ~~DlH~Ht~~Sd~g~~~~~e~---v~~A~~~Gl~~ia   36 (245)
T 1m65_A            3 PVDLHMHTVASTHAYSTLSDY---IAQAKQKGIKLFA   36 (245)
T ss_dssp             CEECCBCCTTSTTCCCCHHHH---HHHHHHHTCCEEE
T ss_pred             ceEeCcCCCCCCCCCCcHHHH---HHHHHHCCCCEEE
Confidence            689999997663333355544   7778889998765

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=90.24  E-value=5  Score=34.20  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~  235 (331)
                      +.|.+++.+....  ....+++.++++.+.++++|+.+..+.
T Consensus        32 ~~G~~~vEl~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~   71 (290)
T 3tva_A           32 DLKVPTVQVHAPH--PHTRTREHAQAFRAKCDAAGIQVTVIF   71 (290)
T ss_dssp             HTTCSEEEEECCC--GGGCSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HcCCCEEEecCCC--CCcCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            7899999876532  123578889999999999999998873

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=89.96  E-value=2.1  Score=37.02  Aligned_cols=119  Identities=14%  Similarity=0.124  Sum_probs=70.5

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEec---CCCCcCCHHHHHHHHHHHHH----cCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAY---KGSFMINDELLIEGFKRCKS----LGALAMVHAENGDAVFEGQKRMIELGIT  254 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~---~~~~~~~~~~l~~~~~~A~~----~g~~v~~H~e~~~~~~~~~~~~~~~G~~  254 (331)
                      +...+..+++. +.|++.|.+....   ...+...+++++++....+.    .++|+.++..+.+..+...    +.|..
T Consensus        38 ~~a~~~a~~~v-~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~~~~va~aAl----~aGa~  112 (282)
T 1aj0_A           38 IDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESA----KVGAH  112 (282)
T ss_dssp             HHHHHHHHHHH-HHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH----HTTCC
T ss_pred             HHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCCCHHHHHHHH----HcCCC
Confidence            34455556666 6899999876522   11122225666555444433    3999999988777665543    33543


Q ss_pred             CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC---C----------------HHHHHHHHHHHHcCCC---EEE
Q 020079          255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---S----------------MDAMEEIAKARKAGPN---FLN  312 (331)
Q Consensus       255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~---~----------------~~~~~~i~~~~~~Gi~---v~~  312 (331)
                      --.....        ....+.+.+++++|+++.+.|..   .                ..-.+.+++++++|++   |..
T Consensus       113 iINdvsg--------~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~Iil  184 (282)
T 1aj0_A          113 IINDIRS--------LSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLL  184 (282)
T ss_dssp             EEEETTT--------TCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             EEEECCC--------CCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence            2111110        01223456788899999999963   1                1123467778899997   887


Q ss_pred             e
Q 020079          313 T  313 (331)
Q Consensus       313 ~  313 (331)
                      |
T Consensus       185 D  185 (282)
T 1aj0_A          185 D  185 (282)
T ss_dssp             E
T ss_pred             e
Confidence            7

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=89.56  E-value=3.6  Score=34.59  Aligned_cols=21  Identities=24%  Similarity=0.029  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHhcCCCEEEEe
Q 020079          270 EATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       270 ~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      ..+.+..+++++.|+++.+..
T Consensus       120 ~~l~~l~~~a~~~gv~l~~E~  140 (272)
T 2q02_A          120 EAIKRLSDLFARYDIQGLVEP  140 (272)
T ss_dssp             HHHHHHHHHHHTTTCEEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEEEe
Confidence            445666677777777765543

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}

Probab=89.26  E-value=2.6  Score=40.43  Aligned_cols=49  Identities=12%  Similarity=-0.059  Sum_probs=30.5

Q ss_pred             HHHHHHHhcCCCEEEEeCCC--HHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          274 RAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       274 ~~~~l~~~~g~~~~i~H~~~--~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +.++.+.+.|+-+.+...+.  ......++.+++ |+++++++..|+....+
T Consensus       474 ~il~~~~e~g~~lEIN~~~~r~~~~~~~~~~a~e-Gl~i~igSDAH~~~~~~  524 (578)
T 2w9m_A          474 AVLGACEANGTVVEINANAARLDLDWREALRWRE-RLKFAINTDAHVPGGLR  524 (578)
T ss_dssp             HHHHHHHHHTCEEEEECSTTTCBSCHHHHHHHTT-TCCEEEECCCSSGGGGG
T ss_pred             HHHHHHHHCCCEEEEECCCCCcCcHHHHHHHHHc-CCEEEEECCCCChhhcc
Confidence            34455556677666665442  123356777888 88888888877765443

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=88.77  E-value=6.8  Score=33.69  Aligned_cols=121  Identities=12%  Similarity=0.024  Sum_probs=67.9

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEec---CCCCcCCHHHHHHHHHHHHHc---CCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAY---KGSFMINDELLIEGFKRCKSL---GALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~---~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      +...+..+++. +.|++.|.+....   .......++++++++...+..   ++++.+...+.+..+...    +.|..-
T Consensus        29 ~~a~~~a~~~v-~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSIDT~~~~va~aAl----~aGa~i  103 (280)
T 1eye_A           29 DDAVKHGLAMA-AAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAAL----QNGAQM  103 (280)
T ss_dssp             HHHHHHHHHHH-HTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH----HTTCCE
T ss_pred             HHHHHHHHHHH-HCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEeCCCHHHHHHHH----HcCCCE
Confidence            44556666666 7899999876422   112223356666655544443   999999988776665443    345422


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC-----------C--------HH-HHHHHHHHHHcCCC---EEE
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-----------S--------MD-AMEEIAKARKAGPN---FLN  312 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~-----------~--------~~-~~~~i~~~~~~Gi~---v~~  312 (331)
                      -......       ....+.+.+++++|+++.+.|..           .        .. -.+.++++.++|++   |..
T Consensus       104 INdvsg~-------~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~Iil  176 (280)
T 1eye_A          104 VNDVSGG-------RADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVL  176 (280)
T ss_dssp             EEETTTT-------SSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             EEECCCC-------CCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence            1111100       00123567788999999999972           0        11 12467778899996   887


Q ss_pred             ec
Q 020079          313 TT  314 (331)
Q Consensus       313 ~~  314 (331)
                      |.
T Consensus       177 DP  178 (280)
T 1eye_A          177 DP  178 (280)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*

Probab=87.90  E-value=0.71  Score=43.45  Aligned_cols=95  Identities=13%  Similarity=0.027  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHH--HHHcCCcEEEEc-CCch-h---hHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079          213 NDELLIEGFKR--CKSLGALAMVHA-ENGD-A---VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP  285 (331)
Q Consensus       213 ~~~~l~~~~~~--A~~~g~~v~~H~-e~~~-~---~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~  285 (331)
                      +.+.+..+++.  |++.|+++.+|+ |... .   .+...+.+ ..|... -+|+......      .++++++.+.++.
T Consensus       307 p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g~~~~~~i~~Al-~Lga~R-IgHGv~l~~d------p~l~~~l~~~~I~  378 (508)
T 3lgd_A          307 SLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDAL-MLNTTR-IGHGFALSKH------PAVRTYSWKKDIP  378 (508)
T ss_dssp             CTGGGHHHHTHHHHTTCCCCBCCEECCSSCCSSTTTTHHHHHH-HTTCSS-EEECTTGGGC------HHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHcCCceeeecccccCCCCCcHHHHHHHH-hcCCce-eeeeEecCcc------HHHHHHHHhcCCe
Confidence            45678888888  889999999997 5421 1   22233333 344322 2444332211      2456777888888


Q ss_pred             EEEEeCCCH-----H--HHHHHHHHHHcCCCEEEecC
Q 020079          286 LYVVHVMSM-----D--AMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       286 ~~i~H~~~~-----~--~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      +.+|..|+.     .  ...+++.+.++|++|+.+|.
T Consensus       379 levCP~SN~~l~~v~~~~~hP~~~ll~~Gv~V~l~TD  415 (508)
T 3lgd_A          379 IEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSD  415 (508)
T ss_dssp             EEECHHHHHHTTSCSSGGGCTHHHHHHTTCCEEECCB
T ss_pred             EEECcchHHHhCCCCCcccChHHHHHHCCCcEEEcCC
Confidence            877776542     1  12478899999999998765

>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15

Probab=87.50  E-value=1.7  Score=38.53  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENG  238 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~  238 (331)
                      +...++++++.++.|..++++.....+    ....+++.+..+++.|.++|+++.+|+...
T Consensus       122 ~~a~~eL~r~~~~~g~~Gv~l~~~~~~~~~~~~~l~d~~~~p~~~~a~e~~lpv~iH~~~~  182 (350)
T 2gwg_A          122 KTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS  182 (350)
T ss_dssp             GGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred             HHHHHHHHHHHhccCCeEEEECCCCCCccCCCCCCCCHHHHHHHHHHHHcCCeEEECCCCC
Confidence            456788888886679999976443222    123567889999999999999999998543

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=87.10  E-value=11  Score=32.06  Aligned_cols=45  Identities=16%  Similarity=0.032  Sum_probs=33.3

Q ss_pred             HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE-Ec
Q 020079          189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV-HA  235 (331)
Q Consensus       189 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~-H~  235 (331)
                      .+.+.+.|.+++.+....  ....+++.++++.+.++++|+.+.. |.
T Consensus        23 l~~~~~~G~~~vEl~~~~--~~~~~~~~~~~~~~~l~~~gl~i~~~~~   68 (294)
T 3vni_A           23 IEKVAKLGFDILEIAASP--LPFYSDIQINELKACAHGNGITLTVGHG   68 (294)
T ss_dssp             HHHHHHHTCSEEEEESTT--GGGCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHcCCCEEEecCcc--cCCcCHHHHHHHHHHHHHcCCeEEEeec
Confidence            333447899999876431  2235788999999999999999988 54

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=86.30  E-value=12  Score=32.54  Aligned_cols=120  Identities=11%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEec---CCCCcCCHHHHHHHH---HHHHH-cCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAY---KGSFMINDELLIEGF---KRCKS-LGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~---~~~~~~~~~~l~~~~---~~A~~-~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      ...+..+++. +.|++.|.+....   .......+|++++++   +..++ .++|+.+...+.+..+...+.    |..-
T Consensus        64 ~a~~~a~~~v-~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~~~~V~~aAl~a----Ga~i  138 (297)
T 1tx2_A           64 AAVRHAKEMR-DEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEA----GAHI  138 (297)
T ss_dssp             HHHHHHHHHH-HTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHHH----TCCE
T ss_pred             HHHHHHHHHH-HcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHc----CCCE
Confidence            3444555555 6899998875422   112222366776655   54444 499999998777666554432    4322


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC---C---------HHHHHHHHHHHHcCCC---EEEec
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---S---------MDAMEEIAKARKAGPN---FLNTT  314 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~---~---------~~~~~~i~~~~~~Gi~---v~~~~  314 (331)
                      -......       ...++.+.+++++|+++.+.|..   .         ..-.+.++.+++.|++   |..|.
T Consensus       139 INdvsg~-------~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDP  205 (297)
T 1tx2_A          139 INDIWGA-------KAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDP  205 (297)
T ss_dssp             EEETTTT-------SSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             EEECCCC-------CCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeC
Confidence            1111000       00124456788889999999963   1         1223467778899997   88773

>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}

Probab=85.96  E-value=16  Score=31.37  Aligned_cols=54  Identities=9%  Similarity=-0.095  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCH--------HHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          270 EATTRAIRLAEFVNTPLYVVHVMSM--------DAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       270 ~~i~~~~~l~~~~g~~~~i~H~~~~--------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      ..+++.++.+.+.|+.+.+.-.+..        ...+.++++++.|++++++...|.-.-++
T Consensus       205 ~~~~~il~~~~~~g~~lEiN~~~l~~~~~~~~yp~~~~~~~~~~~g~~i~igSDAH~~~~vg  266 (283)
T 3dcp_A          205 EKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIG  266 (283)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECGGGGSTTCCSCBSCHHHHHHHHHTTCCEEEECCBSSGGGTT
T ss_pred             HHHHHHHHHHHHcCCEEEEechHhcCCCCCCcCCHHHHHHHHHHcCCCEEEEcCCCCHHHHh
Confidence            4578888999999998887764321        12478999999999999998888765543

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=85.89  E-value=8.4  Score=32.51  Aligned_cols=110  Identities=15%  Similarity=0.088  Sum_probs=60.9

Q ss_pred             HHHHHhCCCeEEEEEecCCC---CcCCHHHHHHHHHHHHHcCCc---EEEEcCCchhhHHHHHHHHHcCCCCcccccccC
Q 020079          190 VMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSLGAL---AMVHAENGDAVFEGQKRMIELGITGPEGHALSR  263 (331)
Q Consensus       190 ~~~~~~g~~~ik~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~---v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~  263 (331)
                      +.+.+.|.+++.++......   ...+.+.++++.+.++++|+.   +.+|..-.-.            +..      ..
T Consensus        19 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~------------l~~------~~   80 (285)
T 1qtw_A           19 IRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLIN------------LGH------PV   80 (285)
T ss_dssp             HHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCC------------TTC------SS
T ss_pred             HHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCceeEEecCCcccc------------cCC------CC
Confidence            33337899998774321111   124678899999999999998   6777521000            000      00


Q ss_pred             Ch--HHHHHHHHHHHHHHHhcCCCEEEEeCCC-------HHH----HHHHHHH--HHcCCCEEEecCCc
Q 020079          264 PP--LLEGEATTRAIRLAEFVNTPLYVVHVMS-------MDA----MEEIAKA--RKAGPNFLNTTIPL  317 (331)
Q Consensus       264 ~~--~~e~~~i~~~~~l~~~~g~~~~i~H~~~-------~~~----~~~i~~~--~~~Gi~v~~~~~p~  317 (331)
                      +.  ......+++.++++...|++..+.|...       ...    .+.++++  ++.|+.+..+..+.
T Consensus        81 ~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~lEn~~~  149 (285)
T 1qtw_A           81 TEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAG  149 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEecCCC
Confidence            00  0112445677788888888877777532       111    1222222  33677777776653

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=85.86  E-value=14  Score=31.08  Aligned_cols=44  Identities=14%  Similarity=0.061  Sum_probs=31.2

Q ss_pred             HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079          190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~  235 (331)
                      +.+++.|.+++.+....  .....++.++++.+.++++|+.+..|.
T Consensus        24 ~~~~~~G~~~vEl~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~   67 (290)
T 2qul_A           24 KRIAGLGFDLMEISLGE--FHNLSDAKKRELKAVADDLGLTVMCCI   67 (290)
T ss_dssp             HHHHHTTCSEEEEESTT--GGGSCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHhCCCEEEEecCC--ccccchhhHHHHHHHHHHcCCceEEec
Confidence            33437899998875432  122235778889999999999998884

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*

Probab=85.64  E-value=13  Score=31.83  Aligned_cols=46  Identities=15%  Similarity=0.046  Sum_probs=32.5

Q ss_pred             HHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079          187 EMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       187 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~  235 (331)
                      +++.+. +.|.+++.+.....  ....++.++++.+.++++|+.+..|.
T Consensus        41 ~l~~~~-~~G~~~vEl~~~~~--~~~~~~~~~~l~~~l~~~gl~i~~~~   86 (309)
T 2hk0_A           41 YIEKVA-KLGFDIIEVAAHHI--NEYSDAELATIRKSAKDNGIILTAGI   86 (309)
T ss_dssp             HHHHHH-HTTCSEEEEEHHHH--TTSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHH-HhCCCEEEeccCCc--cccchhhHHHHHHHHHHcCCeEEEec
Confidence            344444 78999998764321  11234778889999999999999985

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=85.46  E-value=4.3  Score=35.63  Aligned_cols=50  Identities=10%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CCCCc--------CCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KGSFM--------INDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~~~~--------~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .++..+++++.|++.+-+.++. |+.+.        .+.+.|+++-+   +.++|+..|-.+
T Consensus       155 Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~---~~~vpLVlHGgS  213 (323)
T 2isw_A          155 PQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISD---LTGIPLVMHGSS  213 (323)
T ss_dssp             HHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHH---HHCSCEEECSCC
T ss_pred             HHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHH---HhCCCeEEECCC
Confidence            5667777767899988664432 44332        44556666644   348999999644

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=84.86  E-value=12  Score=31.43  Aligned_cols=111  Identities=16%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             HHHHHHHhCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCc---EEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079          188 MEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGAL---AMVHAENGDAVFEGQKRMIELGITGPEGHAL  261 (331)
Q Consensus       188 ~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~---v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~  261 (331)
                      ++.+. +.|.+++.++.....   ....+++.++++.+.++++|+.   +.+|..-.-.            +..+     
T Consensus        18 l~~~~-~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~------------~~~~-----   79 (287)
T 2x7v_A           18 PQDTV-NIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLIN------------LASP-----   79 (287)
T ss_dssp             HHHHH-HTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCC------------TTCS-----
T ss_pred             HHHHH-HcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcceeEEecccccc------------cCCC-----
Confidence            33444 789999887542211   1234678899999999999998   7888521000            0000     


Q ss_pred             cCCh--HHHHHHHHHHHHHHHhcCCCEEEEeCCC------HH----HHHHHHHHHH--cCCCEEEecCCc
Q 020079          262 SRPP--LLEGEATTRAIRLAEFVNTPLYVVHVMS------MD----AMEEIAKARK--AGPNFLNTTIPL  317 (331)
Q Consensus       262 ~~~~--~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~----~~~~i~~~~~--~Gi~v~~~~~p~  317 (331)
                       .+.  ......+++.+++++..|++..+.|...      ..    ..+.++++.+  .|+.+..+..+.
T Consensus        80 -~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~  148 (287)
T 2x7v_A           80 -KDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQ  148 (287)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCC
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCC
Confidence             000  0112345677788888888877776431      11    1222333222  577777776553

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=83.55  E-value=7.8  Score=32.95  Aligned_cols=122  Identities=14%  Similarity=0.037  Sum_probs=74.0

Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHAL  261 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~  261 (331)
                      ...+..+++. +.|++.|.+..+  ......+|++++++...++. ++|+.+=..+++..+...+.+  .|..   ....
T Consensus        26 ~a~~~a~~~v-~~GAdiIDIg~g--~~~v~~~ee~~rvv~~i~~~~~~pisIDT~~~~v~~aAl~a~--~Ga~---iINd   97 (262)
T 1f6y_A           26 PVQEWARRQE-EGGARALDLNVG--PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLKKC--KNRA---MINS   97 (262)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEBCC------CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHC--SSCE---EEEE
T ss_pred             HHHHHHHHHH-HCCCcEEEECCC--CCCCChHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHhhC--CCCC---EEEE
Confidence            3445555666 689988876542  12233577888888887766 889988877666555444332  1321   1111


Q ss_pred             cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----------HHHHHHHHHHHHcCCC---EEEecC
Q 020079          262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----------MDAMEEIAKARKAGPN---FLNTTI  315 (331)
Q Consensus       262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----------~~~~~~i~~~~~~Gi~---v~~~~~  315 (331)
                      ....   .+..++.+.+++++|+++.+.|...           ..-.+.++++++.|++   |..|..
T Consensus        98 vs~~---~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg  162 (262)
T 1f6y_A           98 TNAE---REKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPL  162 (262)
T ss_dssp             ECSC---HHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECC
T ss_pred             CCCC---cccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCC
Confidence            1111   1334567788899999999999731           1113467778899995   887654

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=83.13  E-value=16  Score=33.88  Aligned_cols=123  Identities=13%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079          128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY  206 (331)
Q Consensus       128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~  206 (331)
                      ....+.++.+|+..++-+....+. +....++..++.+......+.+..+.....+...+.++++. +.|++.|.+- +.
T Consensus       103 ~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~-~~Gad~I~l~-DT  180 (464)
T 2nx9_A          103 DTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLA-ELGVDSIALK-DM  180 (464)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHH-HTTCSEEEEE-ET
T ss_pred             HHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHH-HCCCCEEEEc-CC
Confidence            444667888999887744322222 45555666665554433333322222222233334444444 7899877542 22


Q ss_pred             CCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079          207 KGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT  254 (331)
Q Consensus       207 ~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~  254 (331)
                      .+  ...+..+.++++..++ .++++.+|+.++....-.. ....+.|..
T Consensus       181 ~G--~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~laAv~AGa~  228 (464)
T 2nx9_A          181 AG--ILTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMTLLKAIEAGVD  228 (464)
T ss_dssp             TS--CCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCS
T ss_pred             CC--CcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence            22  3467777777776654 5899999997765543322 223455553

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=82.53  E-value=22  Score=30.19  Aligned_cols=45  Identities=9%  Similarity=-0.006  Sum_probs=30.8

Q ss_pred             HHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079          189 EVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMV  233 (331)
Q Consensus       189 ~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~  233 (331)
                      .+.+.+.|.+++.+......    ....+.+.++++.+.++++|+.+..
T Consensus        36 l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~   84 (295)
T 3cqj_A           36 LQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPS   84 (295)
T ss_dssp             HHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEE
Confidence            33343789999887543210    1234678889999999999999864

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...

Probab=82.51  E-value=10  Score=33.94  Aligned_cols=40  Identities=13%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             cCCCEEEEeCCCHH-HHHHHHHHHHcCCCEEEecCCccccchhh
Q 020079          282 VNTPLYVVHVMSMD-AMEEIAKARKAGPNFLNTTIPLCDSCSNI  324 (331)
Q Consensus       282 ~g~~~~i~H~~~~~-~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~  324 (331)
                      .|.. .+.|+.... .-+.++.++++|+.+.  +||.+|..++.
T Consensus       228 lg~~-RIgHgv~l~~d~~l~~~l~~~~i~le--~cP~SN~~l~~  268 (367)
T 3iar_A          228 LKTE-RLGHGYHTLEDQALYNRLRQENMHFE--ICPWSSYLTGA  268 (367)
T ss_dssp             SCCS-EEEECGGGGGCHHHHHHHHHTTCEEE--ECHHHHHHTSS
T ss_pred             cCCc-eeeeeeeecCCHHHHHHHHhCCcEEE--ECHHHHHHhCC
Confidence            3443 367765432 2367889999997665  88988877653

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=82.25  E-value=11  Score=32.02  Aligned_cols=33  Identities=9%  Similarity=-0.176  Sum_probs=18.3

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEE
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM  232 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~  232 (331)
                      +.|.+++.+....      ..+.++++.+.++++|+.+.
T Consensus        49 ~~G~~~vEl~~~~------~~~~~~~~~~~l~~~gl~v~   81 (287)
T 3kws_A           49 KLGVVGFEPGGGG------LAGRVNEIKQALNGRNIKVS   81 (287)
T ss_dssp             HTTCCEEECBSTT------CGGGHHHHHHHHTTSSCEEC
T ss_pred             HcCCCEEEecCCc------hHHHHHHHHHHHHHcCCeEE
Confidence            5676666543210      12445666666667777664

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=81.74  E-value=22  Score=30.32  Aligned_cols=123  Identities=14%  Similarity=0.028  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCCCccccc
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHA  260 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~  260 (331)
                      +...+..+++. +.|++.|.+....  +..-..+.+..+++..++. ++|+.+=..+.+..+...+.+  .|..-   ..
T Consensus        34 ~~a~~~a~~~v-~~GAdiIDIg~~s--~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~--~Ga~i---IN  105 (271)
T 2yci_X           34 RPIQEWARRQA-EKGAHYLDVNTGP--TADDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVH--RGHAM---IN  105 (271)
T ss_dssp             HHHHHHHHHHH-HTTCSEEEEECCS--CSSCHHHHHHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHC--CSCCE---EE
T ss_pred             HHHHHHHHHHH-HCCCCEEEEcCCc--CchhHHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhC--CCCCE---EE
Confidence            34455555666 6888888765432  1122355666666666554 889988877666555544332  13211   11


Q ss_pred             ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC------C-----HHHHHHHHHHHHcCCC---EEEecC
Q 020079          261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM------S-----MDAMEEIAKARKAGPN---FLNTTI  315 (331)
Q Consensus       261 ~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~------~-----~~~~~~i~~~~~~Gi~---v~~~~~  315 (331)
                      .....   .+...+.+.+++++|+++.+.|..      +     ..-.+.++.+.+.|++   |..|..
T Consensus       106 dvs~~---~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg  171 (271)
T 2yci_X          106 STSAD---QWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPL  171 (271)
T ss_dssp             EECSC---HHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECC
T ss_pred             ECCCC---ccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecC
Confidence            11111   122356677888899999999972      1     1123456777889987   776643

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*

Probab=81.65  E-value=8.1  Score=36.94  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      ++|.|+|...+ -|..+++++   .+.+.+.|++.+.
T Consensus       338 ~~DlH~HT~~S-DG~~t~ee~---v~~A~~~G~~~ia  370 (575)
T 3b0x_A          338 KGDLQVHSTYS-DGQNTLEEL---WEAAKTMGYRYLA  370 (575)
T ss_dssp             CEEEEECCTTT-TCSCCHHHH---HHHHHHTTCSEEE
T ss_pred             CeeEeecCCcc-CCCCCHHHH---HHHHHHCCCCEEE
Confidence            78999998766 354555544   7778889998765

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=81.47  E-value=16  Score=34.76  Aligned_cols=122  Identities=12%  Similarity=0.021  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCCCccccccc
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHALS  262 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~  262 (331)
                      ..+..+++. +.|++.|.+.  +.......++++++++...++. ++|+.+=..+.+..+...+.+  .|..-   ....
T Consensus       342 a~~~A~~~v-~~GAdiIDIg--pg~~~v~~~ee~~rvv~~i~~~~~vpisIDT~~~~v~eaal~~~--~G~~i---INdi  413 (566)
T 1q7z_A          342 VIKEAKTQV-EKGAEVLDVN--FGIESQIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAY--PGRSL---FNSA  413 (566)
T ss_dssp             HHHHHHHHH-HTTCSEEEEE--CSSGGGSCHHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHC--SSCCE---EEEE
T ss_pred             HHHHHHHHH-HCCCCEEEEC--CCCCCCCHHHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHHhc--CCCCE---EEEC
Confidence            344445555 6899999875  3333345688888888777655 999998877776665554433  13221   1110


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCEEEEeCCC----------HHHHHHHHHHHHcCCC--EEEecCC
Q 020079          263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMS----------MDAMEEIAKARKAGPN--FLNTTIP  316 (331)
Q Consensus       263 ~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~----------~~~~~~i~~~~~~Gi~--v~~~~~p  316 (331)
                         ..+.+.+.+.+.+++++|+++.+.|...          ..-.+.++.+.+.|++  |..|...
T Consensus       414 ---s~~~~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~Gi~~~IilDPg~  476 (566)
T 1q7z_A          414 ---KVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDRVIFDPGV  476 (566)
T ss_dssp             ---ESCHHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred             ---CcchhhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCCCCCcEEEeCCC
Confidence               1111233567788999999999999752          1123467778899995  7776443

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=81.27  E-value=25  Score=31.18  Aligned_cols=97  Identities=12%  Similarity=0.074  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHH-----------------HHHcCCCCcccccc-cCChHHHHHHHH
Q 020079          212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR-----------------MIELGITGPEGHAL-SRPPLLEGEATT  273 (331)
Q Consensus       212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~-----------------~~~~G~~~~~~~~~-~~~~~~e~~~i~  273 (331)
                      .+.+.++.+.+.+++.|+++..=+-+...++...+.                 +.+.+-.+...... +...   ...+.
T Consensus        88 l~~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGmat---~~Ei~  164 (349)
T 2wqp_A           88 LNEEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNS---IESIK  164 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCC---HHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCC---HHHHH
Confidence            578899999999999999998877666555444211                 22222222111111 1111   23344


Q ss_pred             HHHHHHHhcCCCEEEEeCCCH-------HHHHHHHHHHHc--CCCEE
Q 020079          274 RAIRLAEFVNTPLYVVHVMSM-------DAMEEIAKARKA--GPNFL  311 (331)
Q Consensus       274 ~~~~l~~~~g~~~~i~H~~~~-------~~~~~i~~~~~~--Gi~v~  311 (331)
                      ..++.....|..+.++||.+.       -.+..+..+|+.  +++|.
T Consensus       165 ~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg  211 (349)
T 2wqp_A          165 KSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIG  211 (349)
T ss_dssp             HHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEE
Confidence            555556666668888888752       123445555553  56664

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}

Probab=80.82  E-value=26  Score=30.07  Aligned_cols=46  Identities=11%  Similarity=0.097  Sum_probs=29.7

Q ss_pred             HHHHHHHhCCCeEEEEEecCCCCcCC----HHHHHHHHHHHHHcCCcEEEE
Q 020079          188 MEVMVKEKGINSFKFFMAYKGSFMIN----DELLIEGFKRCKSLGALAMVH  234 (331)
Q Consensus       188 ~~~~~~~~g~~~ik~~~~~~~~~~~~----~~~l~~~~~~A~~~g~~v~~H  234 (331)
                      +.+.+++.|.+++.++...... ..+    .+..+++.+.++++|+.+..+
T Consensus        40 ~~~~a~~~G~~~vEl~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gl~i~~~   89 (316)
T 3qxb_A           40 AGLVRDDLGLEYVQYTYDLTDP-WWPDIERDRRAIAYAKAFRKAGLTIEST   89 (316)
T ss_dssp             HHHHHHTSCCCEEEEETTTSCT-TSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCCEEEeeccccCc-cccccchhhHHHHHHHHHHHcCCeEEEe
Confidence            3344447899999876432211 112    236778888999999998764

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=80.62  E-value=4  Score=34.39  Aligned_cols=87  Identities=14%  Similarity=0.044  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCCCcCC-------HHHHHHHHHHHHHcCCcEE-EEcCCchh---hHHHHHHHHHcC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGSFMIN-------DELLIEGFKRCKSLGALAM-VHAENGDA---VFEGQKRMIELG  252 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~-------~~~l~~~~~~A~~~g~~v~-~H~e~~~~---~~~~~~~~~~~G  252 (331)
                      ..+++++..++.|.....+..... ....+       .+.+++.++.|++.|.+.. +|......   .+...+.     
T Consensus        47 ~~~~~~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~-----  120 (278)
T 1i60_A           47 SLDDLAEYFQTHHIKPLALNALVF-FNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKS-----  120 (278)
T ss_dssp             CHHHHHHHHHTSSCEEEEEEEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHH-----
T ss_pred             CHHHHHHHHHHcCCCeeeeccccc-cccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHH-----
Confidence            455666666556664332222111 11012       3456778888888888644 45422110   0111111     


Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                                     -...+.+..+.+++.|+++.+...
T Consensus       121 ---------------~~~~l~~l~~~a~~~gv~l~lEn~  144 (278)
T 1i60_A          121 ---------------SVDVLTELSDIAEPYGVKIALEFV  144 (278)
T ss_dssp             ---------------HHHHHHHHHHHHGGGTCEEEEECC
T ss_pred             ---------------HHHHHHHHHHHHHhcCCEEEEEec
Confidence                           134566777778888888766544

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=80.47  E-value=7.7  Score=33.35  Aligned_cols=88  Identities=18%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhCCCeEEEEEecCCC---CcCCHHHHHHHHHHHHHcCC-cEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079          186 DEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSLGA-LAMVHAENGDAVFEGQKRMIELGITGPEGHAL  261 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~~~~~~~~---~~~~~~~l~~~~~~A~~~g~-~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~  261 (331)
                      +.++.+. +.|.+.+.++......   ...+++.++++.+.++++|+ .+.+|..-...            +..+     
T Consensus        22 ~~l~~~~-~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~h~~~~~n------------l~s~-----   83 (303)
T 3aal_A           22 AASEEAA-SYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAPYIIN------------IGNT-----   83 (303)
T ss_dssp             HHHHHHH-HTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEEEECCTTCC------------TTCS-----
T ss_pred             HHHHHHH-HcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEEEecccccc------------CCCC-----
Confidence            3344444 7899999875432111   12335677888888999999 78999521100            0000     


Q ss_pred             cC-Ch--HHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079          262 SR-PP--LLEGEATTRAIRLAEFVNTPLYVVHVM  292 (331)
Q Consensus       262 ~~-~~--~~e~~~i~~~~~l~~~~g~~~~i~H~~  292 (331)
                       . +.  ......+.+.++++...|++..+.|..
T Consensus        84 -d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g  116 (303)
T 3aal_A           84 -TNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPG  116 (303)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCE
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCC
Confidence             0 00  011244566778888888887777643

>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*

Probab=80.43  E-value=17  Score=32.69  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             HHHHHHHHhCCCeEEEEEecCCCCcCC----HHHHHHHHHHHHHcCCcEEEEcCCc-hhhHHHHHHHHHcC-CCCccccc
Q 020079          187 EMEVMVKEKGINSFKFFMAYKGSFMIN----DELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELG-ITGPEGHA  260 (331)
Q Consensus       187 ~~~~~~~~~g~~~ik~~~~~~~~~~~~----~~~l~~~~~~A~~~g~~v~~H~e~~-~~~~~~~~~~~~~G-~~~~~~~~  260 (331)
                      .++.+. +.|.+++.+......+...+    .+.++++.+.++++|+.+..|.... ....     + ..| +..+    
T Consensus        38 ~l~~aa-~~G~d~VEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~-----~-~~g~l~~~----  106 (394)
T 1xla_A           38 AVHKLA-ELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPV-----F-KDGGFTSN----  106 (394)
T ss_dssp             HHHHHH-HHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBCCEEECCCSSSGG-----G-TTCSTTCS----
T ss_pred             HHHHHH-HcCCCEEEecCCccCcccCCchhhHHHHHHHHHHHHHcCCeEEEEecCccCCcc-----c-cCCccCCC----
Confidence            344444 78999997764211111112    4578888999999999987763210 0000     0 000 0000    


Q ss_pred             ccCCh--HHHHHHHHHHHHHHHhcCCCEEEEeCCC-----------H-------HHHH-HHHHHHHcC--CCEEEecCCc
Q 020079          261 LSRPP--LLEGEATTRAIRLAEFVNTPLYVVHVMS-----------M-------DAME-EIAKARKAG--PNFLNTTIPL  317 (331)
Q Consensus       261 ~~~~~--~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----------~-------~~~~-~i~~~~~~G--i~v~~~~~p~  317 (331)
                        .+.  ......+++.++++...|++..+.|...           .       +.+. ..+.+++.|  +.+..+..|.
T Consensus       107 --d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~~~~  184 (394)
T 1xla_A          107 --DRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIALEPKPN  184 (394)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSS
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence              000  0112456778888888898877776431           0       1222 234456788  8888776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1kcxa2	334	c.1.9.6 (A:67-400) Dihydropyrimidinase related pro	5e-40
d2ftwa2	334	c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas	6e-39
d1ynya2	332	c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR	2e-36
d1nfga2	330	c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi	1e-35
d2fvka2	384	c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas	2e-30
d1gkpa2	335	c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta	1e-26
d1gkra2	325	c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au	7e-22
d1xrta2	310	c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui	5e-19
d2fvka1	156	b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid	6e-13
d1onwa1	105	b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas	2e-12
d2ftwa1	150	b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid	4e-12
d2r8ca1	102	b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei	2e-11
d1kcxa1	142	b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r	2e-11
d1gkpa1	123	b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu	4e-11
d2vhla2	301	c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat	2e-10
d1ynya1	127	b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill	4e-10
d1m7ja1	55	b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas	8e-10
d1i0da_	331	c.1.9.3 (A:) Phosphotriesterase (parathion hydrola	1e-08
d1gkra1	126	b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro	2e-08
d1k1da1	128	b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill	3e-08
d2qs8a1	96	b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {A	9e-08
d1ejxc1	181	b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o	1e-07
d1nfga1	127	b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho	4e-06
d1yrra1	85	b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-	6e-05
d2vhla1	91	b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6-	7e-05
d2p9ba1	118	b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote	9e-05
d2eg6a1	343	c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli	0.002

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  141 bits (356), Expect = 5e-40
 Identities = 109/219 (49%), Positives = 140/219 (63%), Gaps = 2/219 (0%)

Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
           PGGID +T+L     G  + DDFF G  AALAGGTTM ID V+P  G SL   FE + + 
Sbjct: 1   PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEA 60

Query: 164 AKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
           A   SC DY  H+ IT W + V +E+EV+V++KG+NSF+ +MAYK  + ++D  L E F 
Sbjct: 61  ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFT 120

Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
             K LGA+ +VHAENGD + + QKR++E+GITGPEGHALSRP  LE EA  RAI +A  +
Sbjct: 121 FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRI 180

Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321
           N P+Y+  VMS  A + IA ARK GP      I      
Sbjct: 181 NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGT 219

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  138 bits (348), Expect = 6e-39
 Identities = 123/216 (56%), Positives = 151/216 (69%), Gaps = 2/216 (0%)

Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
           PGGID HTH  + FMG+ ++DDF  G  AA+AGGTT  IDFVIP  G SL   ++ ++K 
Sbjct: 1   PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKW 60

Query: 164 A-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
           A +    DY  H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ +   FK
Sbjct: 61  ADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFK 120

Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
           RCK LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP  LE EAT RAI +A+ V
Sbjct: 121 RCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSV 180

Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLC 318
            TP+Y+VHV S+ A + I K RK G       I   
Sbjct: 181 CTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAG 216

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

 Score =  131 bits (330), Expect = 2e-36
 Identities = 98/215 (45%), Positives = 129/215 (60%), Gaps = 2/215 (0%)

Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
           GGIDPHTHL M F G+ T DDFF+G  AA  GGTT  +DF +   G SL +    + +KA
Sbjct: 1   GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKA 60

Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
           +  + +DYGFH+ I + ++ V +E+E ++  +GI S K FMAYK  F  +DE L +   +
Sbjct: 61  RGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVK 120

Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
            K LGAL  VHAENGD +    K+ +  G T P  HA +RPP  EGEAT RAI L     
Sbjct: 121 AKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAG 180

Query: 284 TPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLC 318
           + LYVVHV    A++ IA+AR+ G N    T P  
Sbjct: 181 SQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQY 215

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

 Score =  129 bits (325), Expect = 1e-35
 Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 3/213 (1%)

Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
           GGID HTH+      +++ D F +   AA  GGTT  +DF     G SL      ++  A
Sbjct: 1   GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMA 60

Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
              S +DYG+H+ +    + V +E+EV+  + GI SFK FMAY+G  MI+D  L++   +
Sbjct: 61  GGKSAIDYGYHIIVLDPTDSVIEELEVL-PDLGITSFKVFMAYRGMNMIDDVTLLKTLDK 119

Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
               G+L MVHAENGDA    + + +  G T P  HALSRPP +E EAT RA+ LAE VN
Sbjct: 120 AVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN 179

Query: 284 TPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
            P+Y+VHV   +++EE+ +A+  G   L  T  
Sbjct: 180 APIYIVHVTCEESLEEVMRAKSRGVRALAETCT 212

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

 Score =  117 bits (292), Expect = 2e-30
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAG-------F 157
           GGID H H+     +  + +D       +A+AGGTT  + F                   
Sbjct: 1   GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60

Query: 158 EAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSF 210
           +  E   +    DYG H+ + + ++   +  E++         + G++S K FM Y    
Sbjct: 61  DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYP-GL 119

Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
            I+D  ++      +  G   M+HAENGD V    + + E G+T    H +SRP ++EGE
Sbjct: 120 QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGE 179

Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
           AT RAI LA  ++TP+  VHV S  A E I +A+  G      T P
Sbjct: 180 ATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCP 225

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

 Score =  105 bits (261), Expect = 1e-26
 Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK- 165
           IDPH H+ + FM +   D   +G  AAL GGTT +I+   P        G++ ++ KA+ 
Sbjct: 2   IDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEG 61

Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
           NS  DY FHMA++K+DE    ++  +V   GI+SFK F++YK  F ++D  + +  +  K
Sbjct: 62  NSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 120

Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
            LG +   H EN + V   Q++++  G TGPE H  SRP  +E E T R     E     
Sbjct: 121 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGAT 180

Query: 286 LYVVHVMSMDAMEEIAKARKAGPNF 310
            YVVH+    A++    A+  G   
Sbjct: 181 GYVVHLSCKPALDAAMAAKARGVPI 205

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

 Score = 92.1 bits (227), Expect = 7e-22
 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 2/217 (0%)

Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPI-NGSLTAGFEAYEKKA 164
           G +D H H+ ++         F     +A  GG T  I+  I     +    F   +K+A
Sbjct: 1   GVVDEHVHI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQA 59

Query: 165 KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRC 224
                             +            G  S            ++D  L E F+  
Sbjct: 60  GQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEI 119

Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
            + G++ +VHAEN   +   QK++   G      +  S+P   E EA  RA+ L +    
Sbjct: 120 AACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGC 179

Query: 285 PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321
            L V+HV + D +E I +A+  G +    + P   + 
Sbjct: 180 RLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNI 216

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

 Score = 83.9 bits (206), Expect = 5e-19
 Identities = 47/214 (21%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKK 163
           G ID H HL     G    +D  SG   A+AGG T  +      P   + T      +K 
Sbjct: 1   GFIDIHVHLRD--PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKS 58

Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
                        ITK  +         +KE G  +F       GS +++  ++ +  + 
Sbjct: 59  KSVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFT----DDGSPVMDSSVMRKALEL 114

Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
              LG   M H E+     +    +I  G         SR P  E     R   LA+   
Sbjct: 115 ASQLGVPIMDHCED----DKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTG 170

Query: 284 TPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPL 317
             +++ HV +  ++E I   ++ G        P 
Sbjct: 171 GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPN 204

>d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

 Score = 63.5 bits (154), Expect = 6e-13
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 53  SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGID 109
             ++IK G +  A     A++ V +G V  +  +I+     +V+DA G F+   +PG  D
Sbjct: 3   YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSD 62

Query: 110 PHTHLAMEF 118
               +    
Sbjct: 63  ADLVIWYPD 71

>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Isoaspartyl dipeptidase
domain: Isoaspartyl dipeptidase
species: Escherichia coli [TaxId: 562]

 Score = 60.8 bits (147), Expect = 2e-12
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 51  SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGI 108
           ++   L++G  +     + I DV V +G ++AV  NI      +  V+D +G+ + P  +
Sbjct: 6   AAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEIL 65

Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE 158
             +    +       I+          A G  M    V      +   FE
Sbjct: 66  PGNDADLLVMTPELRIEQ-------VYARGKLM----VKDGKACVKGTFE 104

>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 61.2 bits (148), Expect = 4e-12
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 16/150 (10%)

Query: 52  SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDP 110
           +  ILIK GTVVN      +DV VE+GI+  +  NI   + +KV+DAT K ++   G D 
Sbjct: 1   TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDG 60

Query: 111 HTHLAMEFMGSETIDD---------FFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEA 159
              +           D          F G        TT+    ++  +  L+   G   
Sbjct: 61  DIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGR 120

Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEME 189
           +  +             I + D+V ++ + 
Sbjct: 121 FVPRPPFG----PVFDGIEQRDKVRNELLR 146

>d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 53  SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
           +  L + G +++  H  +    ++ +EDG +  V        +  V+D  GK +MP  + 
Sbjct: 1   TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVP 60

Query: 110 PHTHLAMEFMG 120
                 +   G
Sbjct: 61  GAHADVLVVDG 71

>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHT 112
           ++LI+GG ++N      ADVY+EDG++  +  N+ V   VK ++A G+ V+   G D   
Sbjct: 2   RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADV 61

Query: 113 HL 114
            +
Sbjct: 62  VI 63

>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

 Score = 57.3 bits (138), Expect = 4e-11
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           +LIK G ++ A  +  AD+Y E   +  +  N+      +V+DATGK+V PG        
Sbjct: 2   LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYD- 60

Query: 115 AMEFMGSETIDDFFS 129
             ++ G+ ++     
Sbjct: 61  -PQYRGTISVKTQHV 74

>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
           K  I+GGTVV A     ADV +E   VVA+   ++V    + +DATG +V+P  +     
Sbjct: 1   KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVNGA-EEIDATGCYVIPIAVGSDAD 59

Query: 114 LAMEFMG 120
           + +    
Sbjct: 60  IVIFDPH 66

>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: D-aminoacylase
domain: N-acyl-D-aminoacid amidohydrolase
species: Alcaligenes faecalis [TaxId: 511]

 Score = 51.7 bits (124), Expect = 8e-10
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 55  ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105
            ++ GGTV++  +     ADV V    + AV          + +D  GK V P
Sbjct: 4   YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 26/218 (11%), Positives = 44/218 (20%), Gaps = 30/218 (13%)

Query: 106 GGIDPHTHLAMEFMGSETIDDFFSG-------------QAAALAGGTTMHIDFVIPINGS 152
           G    H H+     G       F G             + A  AG  T+       I   
Sbjct: 16  GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRD 75

Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
           ++   E       +     G          + S E       + I         +   + 
Sbjct: 76  VSLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIK 135

Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
                     +   L A A                      TG      +     +GE  
Sbjct: 136 VATTGKATPFQELVLKAAARASLA-----------------TGVPVTTHTAASQRDGEQQ 178

Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNF 310
                      + + + H    D +  +      G   
Sbjct: 179 AAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLI 216

>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG---GIDPH 111
           +++K   +V++     AD+ V+DG V A+  + +  +  + +DA GKFVMP    G D  
Sbjct: 4   VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDAD 63

Query: 112 THLA-MEFMGSETIDDFFSGQAAALAGGTTMH 142
             +  ++         F S    +   G  + 
Sbjct: 64  LLILDLDIDTKVDASQFRSLHKYSPFDGMPVT 95

>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 54  KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
             +IK GT+V A     A + ++DG +  +  N+      +V+DA G +V P  +     
Sbjct: 2   TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE-EKGAEVIDAKGCYVFPIVVGSDAD 60

Query: 114 LAMEFMGSETI 124
           L +     E +
Sbjct: 61  LVIFDPNIERV 71

>d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 96

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

 Score = 47.2 bits (112), Expect = 9e-08
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 53  SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
           SK LI  G +++    Q+     + ++  I+  ++   I+  D    +D     V+P   
Sbjct: 1   SKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIE 60

Query: 109 DPHTHLAMEFMGSETID 125
                  +   G+   D
Sbjct: 61  SGKLADLIAVKGNPIED 77

>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Klebsiella aerogenes [TaxId: 28451]

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 16/106 (15%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVM 104
           +++    +V+      AD+ V+DG + A+    N          +G   +V+ A GK V 
Sbjct: 67  LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126

Query: 105 PGGIDPHTH-----LAMEFMGSETIDDFFSGQ-AAALAGGTTMHID 144
            G I+          +  F G +       G  A A  G     I 
Sbjct: 127 AGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIP 172

>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 55  ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
           I+IK GT+V A     AD+ ++DG +  +   +   +  + +DA G++V P  +     +
Sbjct: 3   IIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPIAVGSDADI 60

Query: 115 AM 116
            +
Sbjct: 61  VL 62

>d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 55  ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
             +  G +   H       V + DG++ +V P   +  +++     G  + P        
Sbjct: 2   YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVA 61

Query: 114 LAMEF-MGSETIDDFFSG 130
               F    +      +G
Sbjct: 62  NLTAFTPDFKITKTIVNG 79

>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 7/96 (7%)

Query: 54  KILIKGGTVV----NAHHQQIADVYVE-DGIVVAV--QPNINVGDDVKVLDATGKFVMPG 106
              +   T+V         +   + V  DG +  V      ++  +   LD TGK VM  
Sbjct: 5   PFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLE 64

Query: 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142
                  L +     + +           AG     
Sbjct: 65  VGKSADLLVLNANPLDDLRALEHPALVIAAGHPVWR 100

>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Dihydroorotase
domain: Dihydroorotase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 21/210 (10%), Positives = 44/210 (20%), Gaps = 25/210 (11%)

Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN 166
           D H HL    M    +           +      I    + P   +      AY ++  +
Sbjct: 11  DWHLHLRDGDMLKTVV--------PYTSEIYGRAIVMPNLAPPVTT-VEAAVAYRQRILD 61

Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
           +         +       S +   + +      F     Y  +   N    +        
Sbjct: 62  AVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMP 121

Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
              L  +       +  G+                          +             +
Sbjct: 122 --VLERMEKIGMPLLVHGEV---------THADIDIFDREARFIESVMEPLRQRLTALKV 170

Query: 287 YVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
              H+ + DA + +   R        T  P
Sbjct: 171 VFEHITTKDAADYV---RDGNERLAATITP 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d2ftwa2	334	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	99.97
d1kcxa2	334	Dihydropyrimidinase related protein-1 {Mouse (Mus	99.97
d1ynya2	332	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	99.96
d1nfga2	330	D-hydantoinase {Burkholderia pickettii [TaxId: 329	99.96
d1gkpa2	335	D-hydantoinase {Thermus sp. [TaxId: 275]}	99.95
d2fvka2	384	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	99.94
d1gkra2	325	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	99.92
d1xrta2	310	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	99.89
d1onwa1	105	Isoaspartyl dipeptidase {Escherichia coli [TaxId:	99.68
d1yrra1	85	N-acetylglucosamine-6-phosphate deacetylase, NagA	99.66
d2i9ua2	310	Guanine deaminase {Clostridium acetobutylicum [Tax	99.64
d2p9ba1	118	Uncharacterized protein BL1453 {Bifidobacterium lo	99.61
d1ejxc1	181	alpha-Subunit of urease {Klebsiella aerogenes [Tax	99.57
d2uz9a2	313	Guanine deaminase {Human (Homo sapiens) [TaxId: 96	99.56
d1p1ma2	281	Hypothetical protein TM0936, probable catalytic do	99.54
d2fvka1	156	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	99.53
d2r8ca1	102	Uncharacterized protein EAJ56179 {Unidentified org	99.52
d1nfga1	127	D-hydantoinase {Burkholderia pickettii [TaxId: 329	99.49
d1ynya1	127	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	99.46
d1gkra1	126	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	99.44
d1k1da1	128	D-hydantoinase {Bacillus stearothermophilus [TaxId	99.41
d2eg6a1	343	Dihydroorotase {Escherichia coli [TaxId: 562]}	99.4
d2qs8a1	96	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	99.39
d1gkpa1	123	D-hydantoinase {Thermus sp. [TaxId: 275]}	99.38
d2imra2	308	Hypothetical protein DR0824 {Deinococcus radiodura	99.31
d2paja2	336	Hypothetical protein GOS_1943094 {Environmental sa	99.28
d1m7ja1	55	N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae	99.25
d1kcxa1	142	Dihydropyrimidinase related protein-1 {Mouse (Mus	99.25
d2vhla1	91	N-acetylglucosamine-6-phosphate deacetylase, NagA	99.21
d1i0da_	331	Phosphotriesterase (parathion hydrolase, PTE) {Pse	99.2
d1m7ja3	358	N-acyl-D-aminoacid amidohydrolase, catalytic domai	99.17
d2ftwa1	150	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	99.12
d2ooda2	325	Guanine deaminase {Bradyrhizobium japonicum [TaxId	98.83
d4ubpc1	180	alpha-Subunit of urease {Bacillus pasteurii [TaxId	98.78
d1xrta1	112	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	98.68
d1ra0a2	320	Cytosine deaminase catalytic domain {Escherichia c	98.57
d1bf6a_	291	Phosphotriesterase homology protein {Escherichia c	98.53
d1e9yb1	180	alpha-Subunit of urease {Helicobacter pylori [TaxI	98.51
d2icsa2	267	Putative adenine deaminase EF0837 {Enterococcus fa	98.46
d2bb0a2	300	Imidazolonepropionase {Bacillus subtilis [TaxId: 1	98.44
d1j6oa_	260	Hypothetical protein TM0667 {Thermotoga maritima [	98.41
d2puza2	301	Imidazolonepropionase {Agrobacterium tumefaciens [	98.41
d1xwya1	260	Deoxyribonuclease TatD (MttC) {Escherichia coli [T	98.38
d3be7a2	303	Zn-dependent arginine carboxypeptidase {Unidentifi	98.32
d1zzma1	259	Putative deoxyribonuclease YjjV {Escherichia coli	98.3
d4ubpc2	390	alpha-subunit of urease, catalytic domain {Bacillu	98.29
d1yixa1	265	Putative deoxyribonuclease YcfH {Escherichia coli	98.28
d2puza1	103	Imidazolonepropionase {Agrobacterium tumefaciens [	98.25
d2p9ba2	324	Uncharacterized protein BL1453 {Bifidobacterium lo	98.25
d1onwa2	284	Isoaspartyl dipeptidase, catalytic domain {Escheri	98.23
d2r8ca2	311	Uncharacterized protein EAJ56179 {Unidentified org	98.22
d2qs8a2	310	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	98.21
d1ejxc2	385	alpha-subunit of urease, catalytic domain {Klebsie	98.2
d2q09a2	301	Probable 4-imidazolone-5-propanoate amidohydrolase	98.18
d1e9yb2	389	alpha-subunit of urease, catalytic domain {Helicob	98.11
d1o12a2	288	N-acetylglucosamine-6-phosphate deacetylase, NagA,	97.7
d2vhla2	301	N-acetylglucosamine-6-phosphate deacetylase, NagA,	97.64
d1yrra2	297	N-acetylglucosamine-6-phosphate deacetylase, NagA,	97.46
d1o12a1	76	N-acetylglucosamine-6-phosphate deacetylase, NagA	97.38
d2q09a1	103	Probable 4-imidazolone-5-propanoate amidohydrolase	97.28
d1ra0a1	103	Cytosine deaminase {Escherichia coli [TaxId: 562]}	96.69
d2icsa1	101	Putative adenine deaminase EF0837 {Enterococcus fa	96.68
d2f6ka1	306	Putative amidohydrolase LP2961 {Lactobacillus plan	96.04
d1a4ma_	349	Adenosine deaminase (ADA) {Mouse (Mus musculus) [T	95.24
d2dvta1	325	Thermophilic reversible gamma-resorcylate decarbox	95.16
d2amxa1	357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	93.76
d2hbva1	331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	93.23
d2gwga1	342	4-oxalomesaconate hydratase LigJ {Rhodopseudomonas	91.84
d2ooda1	140	Guanine deaminase {Bradyrhizobium japonicum [TaxId	90.12
d2ffia1	271	Putative 2-pyrone-4,6-dicarboxylic acid hydrolase	89.63
d3be7a1	95	Zn-dependent arginine carboxypeptidase {Unidentifi	88.59
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	87.76
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	87.7
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	83.48
d1geha1	307	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	81.24
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	80.74

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.97  E-value=8.4e-30  Score=229.51  Aligned_cols=218  Identities=56%  Similarity=0.903  Sum_probs=191.7

Q ss_pred             cccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCCh
Q 020079          105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDE  182 (331)
Q Consensus       105 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  182 (331)
                      ||+||.|+|+..+..|..++|+++++.++|+++||||++||....+. ...+.++..++... .+.+++.++.......+
T Consensus         1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~   80 (334)
T d2ftwa2           1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSE   80 (334)
T ss_dssp             ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCH
T ss_pred             CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcch
Confidence            99999999999876677889999999999999999999999876554 56666666665553 46788888877777777


Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccccc
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS  262 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~  262 (331)
                      ...+++..+.+..|+..+|.|+........+++.+.++++.+++.|.++.+|+|+..........+...|..++..+...
T Consensus        81 ~~~~e~~~l~~~~g~~~~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~  160 (334)
T d2ftwa2          81 QVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELS  160 (334)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred             hhhHhHHHHHHhcCccccceeeccccccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCccccccc
Confidence            77788888776679999999987666666788899999999999999999999999888888777888999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       263 ~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      +|+..|..++.+.+.+++..|+++|++|+|+..+++.++++|++|.+|++++||||+.+.
T Consensus       161 rp~~aE~~~v~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~  220 (334)
T d2ftwa2         161 RPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVD  220 (334)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCC
T ss_pred             CcHHHHHHHHHHHHHHHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeecc
Confidence            999999999999999999999999999999999999999999999999999999999765

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=228.49  Aligned_cols=218  Identities=50%  Similarity=0.794  Sum_probs=191.8

Q ss_pred             cccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCCh
Q 020079          105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDE  182 (331)
Q Consensus       105 PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  182 (331)
                      ||+||+|+|+..+..|..++|+++++.++|+++||||++||.+..+. ...+.++...+.+ ..+.+++.++......++
T Consensus         1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~~   80 (334)
T d1kcxa2           1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWYD   80 (334)
T ss_dssp             ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCCT
T ss_pred             CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCCc
Confidence            99999999999886677889999999999999999999999866554 5566666665554 347889988888877777


Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccccc
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS  262 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~  262 (331)
                      ....++..+.+..|+..+|+|+.....+..+++.+.++++.+++.+.++.+|+|+.+........+.+.|..+...+...
T Consensus        81 ~~~~el~~l~~~~g~~~~ki~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~  160 (334)
T d1kcxa2          81 GVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALS  160 (334)
T ss_dssp             THHHHHHHHHHTTCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred             chHHHHHHHHHhccCceeeeeeccCCCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCC
Confidence            77788888775679999999988766677789999999999999999999999998887777777788899998889999


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       263 ~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      +|+..|..++.+.+.+++.+|.++|++|+|+.++++.++++|++|.+|++++||||+.+.
T Consensus       161 rp~~aE~~ai~r~~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~  220 (334)
T d1kcxa2         161 RPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTD  220 (334)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeec
Confidence            999999999999999999999999999999999999999999999999999999998764

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=99.96  E-value=1.9e-28  Score=220.67  Aligned_cols=217  Identities=45%  Similarity=0.703  Sum_probs=189.7

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChh
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEV  183 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  183 (331)
                      |+||+|+|+..+..|..++|+++++.++|+++||||++||.+..+. ...+.++...+... ....++.++......+..
T Consensus         1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~   80 (332)
T d1ynya2           1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQ   80 (332)
T ss_dssp             CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHH
T ss_pred             CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccCccceeeEEEEeccccc
Confidence            8999999999876677889999999999999999999999765544 66677766666553 467888888777666677


Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR  263 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~  263 (331)
                      ...++..+....|+..+|+|+........+.+.+.++++.+++.|.++.+|+|+.+............|...+..+...+
T Consensus        81 ~~~el~~~~~~~g~~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (332)
T d1ynya2          81 VLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTR  160 (332)
T ss_dssp             HHHHHHHHHHTSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTS
T ss_pred             hhHHHHHHHhhhcccceeeeeccccccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccc
Confidence            77788888766799999999877655667889999999999999999999999988877777777888988888888999


Q ss_pred             ChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       264 ~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      |+..|..++.+.+.++.++|+++|++|+++..+++.++++|++|.+|+++|||||+.+.
T Consensus       161 p~~aE~~ai~r~~~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~  219 (332)
T d1ynya2         161 PPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALD  219 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCC
T ss_pred             hhhHHHHHHHHHHHhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999885

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=99.96  E-value=9.9e-29  Score=222.19  Aligned_cols=217  Identities=40%  Similarity=0.627  Sum_probs=187.4

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChh
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEV  183 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  183 (331)
                      |+||.|+|+..+..+....|+++++.++|+++||||++||....+. ...+.+....+.. ..+.+++.++.........
T Consensus         1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~~   80 (330)
T d1nfga2           1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDS   80 (330)
T ss_dssp             CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHH
T ss_pred             CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccchh
Confidence            8999999999874455678999999999999999999999765544 5666666655554 4477888888776666666


Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR  263 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~  263 (331)
                      ..+++..+. +.|+..+|+|++.......+...+.++++.+++.|.++.+|+|+..........+...|...+..+...+
T Consensus        81 ~~~el~~~~-~~Gv~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~r  159 (330)
T d1nfga2          81 VIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSR  159 (330)
T ss_dssp             HHHHTTTGG-GGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTS
T ss_pred             hHHHHhhhh-hhcccceeeeccccccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhccccc
Confidence            666776665 7899999999987766667889999999999999999999999988887777788889999998899999


Q ss_pred             ChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       264 ~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      |+..|..++.+.+.+++..|.++|++|+|+..+++.++++|++|.+|+++|||||+.++.
T Consensus       160 p~~aE~~av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~  219 (330)
T d1nfga2         160 PPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTK  219 (330)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCG
T ss_pred             ChHHHHHHHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999998853

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=99.95  E-value=6.6e-27  Score=210.84  Aligned_cols=215  Identities=33%  Similarity=0.516  Sum_probs=186.6

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhh
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVV  184 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  184 (331)
                      |||.|+|+..+..+...+|+++++.++|+++||||++||.++.+. ...+.++..++.. ..+.+++.++......+...
T Consensus         1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~   80 (335)
T d1gkpa2           1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKT   80 (335)
T ss_dssp             EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTH
T ss_pred             CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCCccceeeEEEEecccccc
Confidence            799999998875555578999999999999999999999765543 5566666655544 44788888887777666667


Q ss_pred             HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP  264 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~  264 (331)
                      ..++.++. ..|+..+|+++........++..+.++++.+++.|.++.+|+|+..............|..++..+...+|
T Consensus        81 ~~el~~l~-~~G~~~~k~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p  159 (335)
T d1gkpa2          81 EGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRP  159 (335)
T ss_dssp             HHHHHHHH-HTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSC
T ss_pred             HHHHHHHH-hhhccccccccccCCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchh
Confidence            78888888 67999999999887777789999999999999999999999999877766667778888888888989999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       265 ~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      ...|..++.+.+.++++.++++|++|+++.++++.++.+|++|.+|++++||||+.+.
T Consensus       160 ~~~E~~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~  217 (335)
T d1gkpa2         160 EAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLD  217 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCC
T ss_pred             hhhHHHHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcC
Confidence            9999999999999999999999999999999999999999999999999999998765

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=99.94  E-value=3.8e-26  Score=208.67  Aligned_cols=216  Identities=32%  Similarity=0.477  Sum_probs=172.2

Q ss_pred             ccccccccccCCCC-CCCChhhHHHHHHHHHhCCceEEecCcCCCCC-----cHHHHHHH-HHH-Hhccceeeccccccc
Q 020079          106 GGIDPHTHLAMEFM-GSETIDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEA-YEK-KAKNSCMDYGFHMAI  177 (331)
Q Consensus       106 G~ID~H~H~~~~~~-~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~-~~~-~~~~~~~~~~~~~~~  177 (331)
                      |+||+|+|+..|.. .....|+++++.++|+.+||||++||....+.     ...+.+.. ..+ ...++.++|+++...
T Consensus         1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~   80 (384)
T d2fvka2           1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL   80 (384)
T ss_dssp             CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred             CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEEE
Confidence            89999999999832 22678899999999999999999999654332     22222322 222 224578888887655


Q ss_pred             cCCChh--hHHH---HHHH--HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHH
Q 020079          178 TKWDEV--VSDE---MEVM--VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE  250 (331)
Q Consensus       178 ~~~~~~--~~~~---~~~~--~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~  250 (331)
                      ......  ..++   +..+  ....|+..+|+|+.+.+ ...+.+.+.++++.+++.|.++.+|+|+.+......+.+..
T Consensus        81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~-~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~  159 (384)
T d2fvka2          81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEE  159 (384)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT-TBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             eCCCCccchHHHHHhHHHHHHcccCcccccceeccccc-cccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhh
Confidence            433221  1111   2111  12469999999987653 45688889999999999999999999999888888788889


Q ss_pred             cCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079          251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS  322 (331)
Q Consensus       251 ~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~  322 (331)
                      .|...+..+...+|...|..++.+.+.++++.|+++|++|+|+..+++.++++|++|++|+++|||||+.++
T Consensus       160 ~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~  231 (384)
T d2fvka2         160 QGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLS  231 (384)
T ss_dssp             TTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCC
T ss_pred             cCCCChhhcccccccchhhHHHHHHHHHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=99.92  E-value=1e-24  Score=195.72  Aligned_cols=212  Identities=25%  Similarity=0.258  Sum_probs=173.0

Q ss_pred             ccccccccccCCCCCCCChh-hHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH-HhccceeeccccccccCCCh
Q 020079          106 GGIDPHTHLAMEFMGSETID-DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEK-KAKNSCMDYGFHMAITKWDE  182 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~-~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  182 (331)
                      |+||+|+|+..+  +...++ +++++.++|+.+||||++||.+..+. ...+.+....+ ......+++.++........
T Consensus         1 G~ID~HvH~rep--g~~~ke~~~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~   78 (325)
T d1gkra2           1 GVVDEHVHIIDM--DLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNL   78 (325)
T ss_dssp             CEEEEEEECCCG--GGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTCH
T ss_pred             CcEeCCcCCCCC--CCCCcccHHHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhccCCccccccccccccccH
Confidence            899999999887  656665 59999999999999999999865554 44455544433 34557888888776654433


Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH  259 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~  259 (331)
                         ..+..+. ..|+.+++.++....   ....++..+.++++.+++.|.++.+|+|+.+........+...|..++..+
T Consensus        79 ---~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~  154 (325)
T d1gkra2          79 ---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAY  154 (325)
T ss_dssp             ---HHHHHHH-HTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHH
T ss_pred             ---HHHHhhh-hcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccc
Confidence               3344444 678888887765422   224567889999999999999999999998887777777788888888888


Q ss_pred             cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      ...+|...|..++.+.+.++...+.++|++|+++..+++.++++|++|.+|+++|||||+.++.
T Consensus       155 ~~~rp~~aE~~~v~r~~~la~~~~~~~hi~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~  218 (325)
T d1gkra2         155 EASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITT  218 (325)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCG
T ss_pred             cccCchHHHHHHHHHHHHHhhhcCcceeccccccHHHHHhhhhhhhcCCceEEeecccccccch
Confidence            8899999999999999999999999999999999999999999999999999999999998874

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.89  E-value=8.4e-23  Score=181.95  Aligned_cols=207  Identities=22%  Similarity=0.164  Sum_probs=141.8

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCC-Ch
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKW-DE  182 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~  182 (331)
                      |+||.|+|+..+  |....|+++++.++|+.+||||++||.+..+. ...+.++...+... ....++.++...... ..
T Consensus         1 G~ID~HvHlr~P--G~~~~ed~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (310)
T d1xrta2           1 GFIDIHVHLRDP--GQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKG   78 (310)
T ss_dssp             CEEEEEECCCTT--TCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCS
T ss_pred             CcEeCcccCCCC--CccccccHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCcc
Confidence            899999999998  77888999999999999999999999765544 34455555444332 244555444433321 11


Q ss_pred             hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccccc
Q 020079          183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS  262 (331)
Q Consensus       183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~  262 (331)
                      +...++..+. ..|...+    ...+....+...+.++++.+++.+.++.+|+|+.......    ...+......+...
T Consensus        79 ~~~~~~~~~~-~~g~~~f----~~~~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~----~~~~~~~~~~~~~~  149 (310)
T d1xrta2          79 KEIADFYSLK-EAGCVAF----TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGV----INEGEVSALLGLSS  149 (310)
T ss_dssp             SSBCCHHHHH-HHTCCCB----CCTTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------
T ss_pred             chhhhhhhcc-cCcEEEE----ECCCCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhh----hhhhhcccccCccc
Confidence            2223344444 4565433    2233445688999999999999999999999986654332    23344445566667


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       263 ~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                      +|+..|..++.+.+.+++..+.++|++|+++..+++.++++|++|.+|+++|||||+.+..
T Consensus       150 rp~~~E~~ai~r~~~la~~~~~~~~i~HiSt~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~  210 (310)
T d1xrta2         150 RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTE  210 (310)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC---
T ss_pred             cchHHHHHHHHHHHHHHhhcCCeeeccccchHHHHHHHHHHHHcCCceecchHHHHhhccc
Confidence            8889999999999999999999999999999999999999999999999999999987653

>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Isoaspartyl dipeptidase
domain: Isoaspartyl dipeptidase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.9e-17  Score=120.83  Aligned_cols=86  Identities=22%  Similarity=0.284  Sum_probs=67.2

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC--CCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG  130 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~--~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~  130 (331)
                      ..++|+|++|++++.....+|+|+||||++|++..+.  .++.++||++|++|+|||||+|.|.........+       
T Consensus         8 ~~llikna~i~~~~~~~~~dI~I~~g~I~~I~~~~~~~~~~~~~vID~~G~~v~PG~ID~H~h~~~~~~p~~~-------   80 (105)
T d1onwa1           8 GFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEILPGNDADLLVMTPELR-------   80 (105)
T ss_dssp             CCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEESCCTTSBCCEEEECTTCC-------
T ss_pred             CCEEEECcEEEcCCCCeeeeEEEECCEEEEeccCcccccCCCCeEEcCCCCEEeCCEeecccCcceecCCCcc-------
Confidence            4589999999999877889999999999999987543  2467899999999999999999875443111122       


Q ss_pred             HHHHHhCCceEEecC
Q 020079          131 QAAALAGGTTMHIDF  145 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~  145 (331)
                      .+..+..|+|++.+-
T Consensus        81 ~~~~~~~G~~~v~~~   95 (105)
T d1onwa1          81 IEQVYARGKLMVKDG   95 (105)
T ss_dssp             EEEEEETTEEEEETT
T ss_pred             hHHHhhcceEEeccC
Confidence            223367899998865

>d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=6.8e-17  Score=114.08  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             EEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC
Q 020079           55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        55 ~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~  117 (331)
                      ++|+|++|+|++. ..+++|+|+||+|.+|++..+.+++.++||++|++|+|||||.|+|....
T Consensus         2 ~al~n~rI~dg~~~~~~~~i~i~~g~I~~Ig~~~~~p~~~~viDl~G~~l~PGlid~hvH~~~~   65 (85)
T d1yrra1           2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVANLTA   65 (85)
T ss_dssp             EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEESCCTTSBCCEEE
T ss_pred             eEEEeeEEECCCCcEeccEEEEeccEEEEEcccccccceeEEEecCCcEEEcccEecceeeccc
Confidence            6899999999886 45789999999999999977777788999999999999999999998655

>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=1.8e-16  Score=140.26  Aligned_cols=191  Identities=15%  Similarity=0.030  Sum_probs=119.8

Q ss_pred             HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc-----cccccCCChhhHHHHHHHHHHh--CCCeEEEE
Q 020079          131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-----HMAITKWDEVVSDEMEVMVKEK--GINSFKFF  203 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--g~~~ik~~  203 (331)
                      ...++++||||+.|+............+...+.+.+..+....     .........+.+++..+..++.  ..+.+...
T Consensus        53 ~~e~l~~GtTtv~d~~~~~~~~~~~~~~a~~~~gir~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~  132 (310)
T d2i9ua2          53 IKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDTEEIILKYKDKSNIVKPI  132 (310)
T ss_dssp             HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTTTCSSEEEC
T ss_pred             HHHHHHcCCcceeeeeccchhhhHHHHHHHHHhCccccccceeccCCccccchhhHHHHHHHHHHHHHHhhcccccccee
Confidence            3457889999999976543333344555556665553333221     1111112223344554444332  33467777


Q ss_pred             EecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH----------HHHHHcCCCCcc-cccccCChHHHHHH
Q 020079          204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ----------KRMIELGITGPE-GHALSRPPLLEGEA  271 (331)
Q Consensus       204 ~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~-~~~~~~~~~~e~~~  271 (331)
                      +.++....++++.++.+.+.|+++|+++++|+ |+..+.....          +.+.+.|.++.. ....+.....    
T Consensus       133 ~~~~~~~~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~~~~~----  208 (310)
T d2i9ua2         133 ITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSS----  208 (310)
T ss_dssp             BEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCTTCSSHHHHHHHTTCSSSSCEEEEECCSCC----
T ss_pred             ecccCCCccCHHHHHHHHHHhhccccceeehhccchHHHHHHHHHhcccccHHHHHHhcCCccCCceeeeeeeeec----
Confidence            78888899999999999999999999999996 7776655443          346777877644 2222221111    


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079          272 TTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV  328 (331)
Q Consensus       272 i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~  328 (331)
                       +++++++++.|+  +++||+..     .++..+++++++|++|+.+|.....+..++.+.|
T Consensus       209 -~~~i~~la~~g~--~vv~cP~sn~~l~~g~~pv~~l~~~Gv~v~lGTD~~~~~~~dm~~~m  267 (310)
T d2i9ua2         209 -KEEINLIKRNNV--TIVHCPTSNFNLGSGMMPVRKYLNLGINVVLGSDISAGHTCSLFKVI  267 (310)
T ss_dssp             -HHHHHHHHHTTC--EEEECHHHHHHTTCCCCCHHHHHHTTCEEEECCCBTTBCCSCHHHHH
T ss_pred             -hhHHHHHHhcCC--EEEEeecccccccCCcccccchhccCceEEEecCCCCCCCCCHHHHH
Confidence             335677778777  47777642     2345799999999999988875444445555544

>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

Probab=99.61  E-value=3.8e-16  Score=116.56  Aligned_cols=65  Identities=25%  Similarity=0.345  Sum_probs=55.2

Q ss_pred             ccEEEECcEEEeCCC----ceeeeEEEe-CCEEEEeeCCCC--CCCCceEEeCCCCeeecccccccccccCC
Q 020079           53 SKILIKGGTVVNAHH----QQIADVYVE-DGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~----~~~~~v~i~-~g~I~~ig~~~~--~~~~~~~id~~g~~v~PG~ID~H~H~~~~  117 (331)
                      ..++|+|++|++++.    .++++|+|+ ||||.+||+..+  .+.+.++||++|++|||||||+|+|+...
T Consensus         4 ~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~~~~~~viD~~Gk~v~PGlid~H~Hl~~~   75 (118)
T d2p9ba1           4 EPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLEVGKSADLLVLN   75 (118)
T ss_dssp             CCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEECCTTSBCCEEEES
T ss_pred             ccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccccceeEEEeccCcEEEeeecceeEEEEec
Confidence            458999999998764    368999995 799999998543  34567999999999999999999999765

>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Klebsiella aerogenes [TaxId: 28451]

Probab=99.57  E-value=4.4e-16  Score=122.05  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=71.0

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS  121 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~  121 (331)
                      ..|++|+|+.|+++.....++|.|+||||++||+...+          .+..++||++|++|+||+||+|+|+.++.   
T Consensus        64 ~lDlvI~n~~Ivd~~Gi~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p~---  140 (181)
T d1ejxc1          64 CVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLVV---  140 (181)
T ss_dssp             SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEEE---
T ss_pred             cccEEEEccEEcCCCCcEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeeee---
Confidence            45899999999999888999999999999999974321          24678999999999999999999999872   


Q ss_pred             CChhhHHHHHHHHHhCCceEEecCc
Q 020079          122 ETIDDFFSGQAAALAGGTTMHIDFV  146 (331)
Q Consensus       122 ~~~~~~~~~~~~~l~~GvTtv~d~~  146 (331)
                      ..++.+..+...++.+|++.+..|.
T Consensus       141 ~~~eal~sG~tt~igGG~~~~gpm~  165 (181)
T d1ejxc1         141 WSPAFFGVKPATVIKGGMIAIAPMG  165 (181)
T ss_dssp             ECGGGTTTSCSEEEETTEEEEEEEC
T ss_pred             eehhhhccchheEEeCCceEEEECC
Confidence            3445554444444556655555553

>d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.6e-15  Score=129.05  Aligned_cols=192  Identities=14%  Similarity=0.006  Sum_probs=120.6

Q ss_pred             HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---cc---cCCChhhHHHHHHHHH---HhCCCeEE
Q 020079          131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---AI---TKWDEVVSDEMEVMVK---EKGINSFK  201 (331)
Q Consensus       131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~---~~g~~~ik  201 (331)
                      ...++++|||++.|+............+...+.+.+.........   ..   ....++.+++..++.+   ..+...++
T Consensus        53 ~~~~l~~G~tt~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  132 (313)
T d2uz9a2          53 VRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVK  132 (313)
T ss_dssp             HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECSCCSSSTTSCCCHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred             HHHHHHhCCeEeeecccccccchhHHHHHHHHhCCcccccceeccCCcccchhhhhHHHHHHHHHHHHHHhhccccccee
Confidence            445788999999987654332222333344445555333222111   11   1112233444444442   35777888


Q ss_pred             EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccccccCChHHHHH
Q 020079          202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGHALSRPPLLEGE  270 (331)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~~~~~~~~~e~~  270 (331)
                      ....++.++..+++.++++.+.|+++|+++++|+ |+..+.....          ..+.+.|++++.....+.....   
T Consensus       133 ~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~---  209 (313)
T d2uz9a2         133 PIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLS---  209 (313)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHSTTSSSHHHHHHHTTCCSTTEEEEECTTCC---
T ss_pred             EEEeccccccccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhhcccCChHHHHHHcCCcCCcceEEeeeecc---
Confidence            8888888899999999999999999999999996 6555544332          3467788877764443333221   


Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCCccccchhhhhhhc
Q 020079          271 ATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVE  329 (331)
Q Consensus       271 ~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~~  329 (331)
                        ++.++++++.|..  ++||+..     ..+..+++++++|++|+.+|.-..+...++.+.|+
T Consensus       210 --~~e~~~l~~~g~~--~~~~P~~~~~~~~~~~~v~~l~~~Gv~valGTD~~~~~~~~~~~~~~  269 (313)
T d2uz9a2         210 --AEELNVFHERGAS--IAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIR  269 (313)
T ss_dssp             --HHHHHHHHHHTCE--EEECHHHHHHTTCCCCCHHHHHHTTCEEEECCCTTTSCCCCHHHHHH
T ss_pred             --hhHHHHHhhhccc--ccccchhhhhccccccchhhhhccCceEEEeCCCCCCCCCCHHHHHH
Confidence              2345677887875  6666532     23456999999999999888855555556555543

>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein TM0936, probable catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.8e-15  Score=132.04  Aligned_cols=212  Identities=15%  Similarity=0.152  Sum_probs=134.2

Q ss_pred             ccccccccccCCCC---------------------CCCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHH
Q 020079          106 GGIDPHTHLAMEFM---------------------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAY  160 (331)
Q Consensus       106 G~ID~H~H~~~~~~---------------------~~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~  160 (331)
                      ||||+|+|+.+...                     ...++++.+.    +...++++||||+.|+...    .....+..
T Consensus         1 GLVnaH~Hl~~~~~rg~~~~~~l~~wl~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~a~   76 (281)
T d1p1ma2           1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH----EEWIAKAV   76 (281)
T ss_dssp             CEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS----HHHHHHHH
T ss_pred             CcEehhhCHhHHHHHhccCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhCCeEEEeeeccC----cHHHHHHH
Confidence            89999999987521                     1234444443    3345789999999998542    34455666


Q ss_pred             HHHhccceeeccccccccCCChhhHHHHHHHHHH-hCC-CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CC
Q 020079          161 EKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-EN  237 (331)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~  237 (331)
                      ++.+.+..+......... ......++..++.++ .+. ..+...+.++....++++.++.+.+.|+++|+++++|+ |+
T Consensus        77 ~~~g~r~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~iH~~e~  155 (281)
T d1p1ma2          77 RDFGMRALLTRGLVDSNG-DDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYET  155 (281)
T ss_dssp             HHHCCEEEEEEEECCBTT-BCTTHHHHHHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             HHhCCceEEeeeeeecCc-cccccHHHHHHHHHHhcCccCceEEEEecccchhhhhhhhHHHHHHHhccCccccccccCC
Confidence            666665444433221111 112233334344323 222 34666778899999999999999999999999999996 65


Q ss_pred             chhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHH-----HHHHHHHHHHcCCCEEE
Q 020079          238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD-----AMEEIAKARKAGPNFLN  312 (331)
Q Consensus       238 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~-----~~~~i~~~~~~Gi~v~~  312 (331)
                      ..+.. ....+.+.|++++.....+.....     +++++++++.|  +.++||+...     ....++++.++|++|+.
T Consensus       156 ~~e~~-~~~~l~~~g~l~~~~~~~H~~~~~-----~~di~~la~~~--~~vv~cP~sn~~lg~~~~~~~~~~~~Gv~v~L  227 (281)
T d1p1ma2         156 SKEEY-DLEDILNIGLKEVKTIAAHCVHLP-----ERYFGVLKDIP--FFVSHNPASNLKLGNGIAPVQRMIEHGMKVTL  227 (281)
T ss_dssp             TTCCC-CTHHHHTTTTTTSCEEEEECTTCC-----GGGTTTTTTSS--EEEEECHHHHHHTTCCCCCHHHHHHTTCEEEE
T ss_pred             cccch-hHHHHHHcCCCCccccccceeeec-----HHHHHHHHhcC--CccccccchhhhhcccchhHHHHHhCCCeEEE
Confidence            44322 234577889998875444333221     12356666655  5677876432     33468899999999999


Q ss_pred             ecC-Cccccchhhhhhhcc
Q 020079          313 TTI-PLCDSCSNIIRMVEF  330 (331)
Q Consensus       313 ~~~-p~~~~~~~~~~~~~~  330 (331)
                      +|. +..+...+|.+.|.+
T Consensus       228 GTD~~~s~~~~d~~~em~~  246 (281)
T d1p1ma2         228 GTDGAASNNSLNLFFEMRL  246 (281)
T ss_dssp             CCCCTTTTSCCCHHHHHHH
T ss_pred             ECCCCCCCCCcCHHHHHHH
Confidence            986 545556666666644

>d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=99.53  E-value=4.7e-15  Score=117.60  Aligned_cols=67  Identities=25%  Similarity=0.415  Sum_probs=59.9

Q ss_pred             CCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCee---ecccccccccccCC
Q 020079           51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGIDPHTHLAME  117 (331)
Q Consensus        51 ~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v---~PG~ID~H~H~~~~  117 (331)
                      +|.+++|+|++|++++....++|+|+||||++|++......+.++||++|++|   +|||||+|+|+..+
T Consensus         1 pm~dllikn~~v~~~~~~~~~di~i~~g~I~~ig~~~~~~~~~~viDa~G~~V~p~~pg~~d~Hih~~~~   70 (156)
T d2fvka1           1 PIYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSDADLVIWYP   70 (156)
T ss_dssp             CCEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECCTTTSBCCEEEECC
T ss_pred             CCccEEEECCEEECCCCCEEEEEEEECCEEEEecCCCCCCCCCEEEECCCCEEeeecccccccceEEEee
Confidence            47889999999999988889999999999999998765555678999999997   69999999999876

>d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

Probab=99.52  E-value=9.9e-15  Score=106.94  Aligned_cols=60  Identities=23%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccccccccc
Q 020079           54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH  113 (331)
Q Consensus        54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H  113 (331)
                      +++|+|++|+|+..   .++.+|+|+||+|++|++....++++++||++|++|+|||||.|.|
T Consensus         2 ~~l~~n~~v~d~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~vID~~G~~v~PGlid~h~~   64 (102)
T d2r8ca1           2 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVPGAHA   64 (102)
T ss_dssp             EEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEESCCTTSBC
T ss_pred             eEEEECeEEECCCCCCcccCcEEEEECCEEEEccccCCCCCCCEEEeCCCCEEECceeeheee
Confidence            48999999999764   3578999999999999987666667899999999999999988764

>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=99.49  E-value=2.4e-14  Score=108.52  Aligned_cols=62  Identities=26%  Similarity=0.515  Sum_probs=55.2

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccC
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM  116 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~  116 (331)
                      .|++|+|++|++++....++|+|+||||++|++...  ++.++||++|++|+||+||.|+|+..
T Consensus         1 mDllikn~~v~~~~~~~~~di~I~dg~I~~ig~~~~--~~~~~iDa~G~~v~Pg~i~~~~~~~i   62 (127)
T d1nfga1           1 MDIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPIAVGSDADIVL   62 (127)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECSTTSBCCEEE
T ss_pred             CcEEEECCEEECCCCCEEEEEEEECCEEEEeeCCCC--CceEEEEeeceEEeeeccccccccee
Confidence            368999999999988888999999999999998653  35799999999999999999999753

>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=99.46  E-value=6.4e-14  Score=106.45  Aligned_cols=61  Identities=34%  Similarity=0.539  Sum_probs=53.1

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccC
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM  116 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~  116 (331)
                      ++|+|++|++++....++|+|+||+|++|++..+.+ ++++||++|++|+||+||.|+|+..
T Consensus         2 ~likn~~i~~~~~~~~~di~I~~g~I~~ig~~~~~~-~~~viDa~g~~v~Pg~i~~~~~~~i   62 (127)
T d1ynya1           2 KWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVN-GAEEIDATGCYVIPIAVGSDADIVI   62 (127)
T ss_dssp             EEEESCEEECSSCEEECEEEEETTEEEEEECC-----CCEEEECTTSEEEECSTTSBCCEEE
T ss_pred             EEEECcEEECCCCCEEEeEEEECCEEEEecCCCCCC-CCEEEEhhhceeecccccccchhhh
Confidence            799999999998888999999999999999876544 5699999999999999999999853

>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=99.44  E-value=7.5e-14  Score=105.78  Aligned_cols=66  Identities=27%  Similarity=0.374  Sum_probs=59.6

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccc---ccccccccCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG---IDPHTHLAME  117 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~---ID~H~H~~~~  117 (331)
                      |.+++|+|++|++++....++|+|+||||++|++.....++.++||++|++|+||+   .|+|.|+..+
T Consensus         1 M~dllIkn~~iv~~~~~~~~Di~I~dgkI~~i~~~~~~~~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp   69 (126)
T d1gkra1           1 MFDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDL   69 (126)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEESCCTTSBCCEEEEES
T ss_pred             CccEEEECcEEECCCCCEEEeEEEECCEEEEEcCcCCcccceEEeehhhcccccceeecccchhheecc
Confidence            56899999999999888889999999999999987665556789999999999998   9999999876

>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.41  E-value=1.4e-13  Score=104.65  Aligned_cols=61  Identities=28%  Similarity=0.477  Sum_probs=53.8

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccccccccccc
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA  115 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~  115 (331)
                      +++|+|++|++++....++|+|+||+|++|++..+.+ ++++||++|++|+||+||.|+|+.
T Consensus         2 ~~likn~~v~~~~~~~~~Di~I~~g~I~~Ig~~~~~~-~~~vida~g~~v~P~~v~~~~~~~   62 (128)
T d1k1da1           2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEEK-GAEVIDAKGCYVFPIVVGSDADLV   62 (128)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEECSSBEEEEESSCCCS-SCCCEECTTCEEEECSTTSBCCEE
T ss_pred             CEEEECcEEECCCCCEEeeEEEECCEEEEEcCCCCCC-ceEEeeeCCCeEeeeecccccceE
Confidence            4899999999998888999999999999999976543 568999999999999997777764

>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Dihydroorotase
domain: Dihydroorotase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.1e-12  Score=117.30  Aligned_cols=191  Identities=15%  Similarity=0.062  Sum_probs=119.4

Q ss_pred             ecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh---ccceeeccccccccC
Q 020079          104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA---KNSCMDYGFHMAITK  179 (331)
Q Consensus       104 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  179 (331)
                      +|--.|+|+|+..        .+.+.....++++|+|+++||.+..+. ...+.++..++..   ......+.+......
T Consensus         6 ~~~~~D~HvH~Re--------g~~~~~t~aa~agG~t~v~~MPNT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~~   77 (343)
T d2eg6a1           6 IRRPDDWHLHLRD--------GDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYL   77 (343)
T ss_dssp             EECCCEEEECCCS--------HHHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEEC
T ss_pred             ECCCCcceEecCC--------CchHhHHHHHHhccCCEEEECCCCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeeec
Confidence            4666899999874        344555677889999999999865544 4444444332221   112222222222222


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG  255 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~  255 (331)
                      ........+.+.........++.+....    .....+...+....+.+++.+..+..|++....               
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------------  142 (343)
T d2eg6a1          78 TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHA---------------  142 (343)
T ss_dssp             CTTCCHHHHHHHHHTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCT---------------
T ss_pred             cCCCChhhhhhhhhccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCccccc---------------
Confidence            2222233343433122223334333211    112334566778899999999999999875432               


Q ss_pred             cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079          256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN  323 (331)
Q Consensus       256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~  323 (331)
                         +....+...|...+.+.+.++...+.++|++|.++.++++.   ++++|.+|+++|||||+.++.
T Consensus       143 ---~~~~~~~eae~~~~~~~~~l~~~~~~~~Hi~HiSt~~~v~~---ir~~~~~vt~EvtPHhL~L~~  204 (343)
T d2eg6a1         143 ---DIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADY---VRDGNERLAATITPQHLMFNR  204 (343)
T ss_dssp             ---TSCGGGHHHHHHHHTHHHHHHHCTTCCEEECSCCSHHHHHH---HHTSCTTEEEEECHHHHHCCH
T ss_pred             ---cccccchhhhhHHHHHHHHHhhccCceEEEEecchhHHHHH---HHhcCCCcceeecCcHHHhhh
Confidence               11224456677778888899999999999999999877554   466788999999999998764

>d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=99.39  E-value=1.7e-13  Score=98.69  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCC-CCCCceEEeCCCCeeeccccccccccc
Q 020079           54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLA  115 (331)
Q Consensus        54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~-~~~~~~~id~~g~~v~PG~ID~H~H~~  115 (331)
                      +++|+|++|+|+..   ..+.+|+|+||+|++|++... .++++++||++|++|||||+|.|+|..
T Consensus         2 ktlI~~g~liDg~~~~~~~~~~I~I~~~~I~~V~~~~~~~~~~~~vID~~G~~v~PGL~~g~~~d~   67 (96)
T d2qs8a1           2 KTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIESGKLADL   67 (96)
T ss_dssp             CEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESCCCCTTSSEEEEEEEEEEEESCCTTSBCCE
T ss_pred             eEEEECeEEEECCCCccccCceEEEECCEEEEEcccccCCCCCCEEEECCCCEeccCccccCcccE
Confidence            37999999999863   468899999999999998543 345689999999999999999999943

>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=99.38  E-value=2.7e-13  Score=101.98  Aligned_cols=62  Identities=31%  Similarity=0.506  Sum_probs=54.8

Q ss_pred             EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccC
Q 020079           55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM  116 (331)
Q Consensus        55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~  116 (331)
                      ++|+|++|++++...+++|+|+||+|++||++...++++++||++|++|+||..++|.|...
T Consensus         2 llIkng~iv~~~~~~~~Di~I~~gkI~~Ig~~l~~~~~~~viDa~G~~v~~g~d~~~~d~~~   63 (123)
T d1gkpa1           2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYDPQY   63 (123)
T ss_dssp             EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECCCEEEEETTC
T ss_pred             EEEECcEEECCCCCEEeeEEEECCEEEEeecCCCCCcchhhhhhccceEecCcceEEEeccc
Confidence            79999999999888899999999999999998776667899999999999999766666543

>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: DR0824-like
domain: Hypothetical protein DR0824
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.31  E-value=1.7e-12  Score=113.33  Aligned_cols=134  Identities=12%  Similarity=0.076  Sum_probs=78.6

Q ss_pred             cccccccccccCCCCC-------------------CCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc
Q 020079          105 PGGIDPHTHLAMEFMG-------------------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK  165 (331)
Q Consensus       105 PG~ID~H~H~~~~~~~-------------------~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~  165 (331)
                      |||||+|+|+.++...                   ....+....+...++++||||+.|+....    ....+...+.+.
T Consensus         1 PGlIdaH~Hl~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~G~Ttv~d~~~~~----~~~~~~~~~~~~   76 (308)
T d2imra2           1 PPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWAP----EVMDALLAREDL   76 (308)
T ss_dssp             SCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECSH----HHHHHHHTCTTC
T ss_pred             CCccchhhChhhhCccccCCCHHHHHHHHHhccccccHHHHHHHHHHHHHHcCCeEEEehhcCH----HHHHHHHHHhCc
Confidence            9999999999764110                   00111223455667999999999986432    222222333333


Q ss_pred             cceeeccccccccCCChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhh
Q 020079          166 NSCMDYGFHMAITKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV  241 (331)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~  241 (331)
                      +...............++......+..+   ......++..+.++..+.++.+.++.....+++.+.+++.|. +...+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  156 (308)
T d2imra2          77 SGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTEL  156 (308)
T ss_dssp             CEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHH
T ss_pred             CeEEEeeecCCCCCCHHHHHHHHHHHHHHHhccCCCceEEeeecccccccchHHHHHHhhhccccCccceeeeecccchh
Confidence            3222222111111112233333333332   234456777778888888899999999999999999999996 544444


Q ss_pred             H
Q 020079          242 F  242 (331)
Q Consensus       242 ~  242 (331)
                      .
T Consensus       157 ~  157 (308)
T d2imra2         157 E  157 (308)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein GOS 1943094
species: Environmental samples

Probab=99.28  E-value=2.6e-11  Score=107.14  Aligned_cols=204  Identities=15%  Similarity=0.023  Sum_probs=108.6

Q ss_pred             cccccccccccCCCC-C----------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCC-----c
Q 020079          105 PGGIDPHTHLAMEFM-G----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING-----S  152 (331)
Q Consensus       105 PG~ID~H~H~~~~~~-~----------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~-----~  152 (331)
                      |||||+|+|+.++.. |                      ..++++++.    +...++++||||++|+......     .
T Consensus         1 PGlInaH~Hl~~s~~rg~~~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~   80 (336)
T d2paja2           1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDS   80 (336)
T ss_dssp             ECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCH
T ss_pred             CCCEehhhChhhhccccccccCCCCHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEecccccccccchhH
Confidence            999999999865421 0                      123444443    3445688999999998654322     2


Q ss_pred             HHHHHHHHHHHhccceeeccccccc---c--------C-CChhhHHHHHHHHHHh-----CCCeEEEEEecCCCCcCCHH
Q 020079          153 LTAGFEAYEKKAKNSCMDYGFHMAI---T--------K-WDEVVSDEMEVMVKEK-----GINSFKFFMAYKGSFMINDE  215 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~~~~~~~~~~-----g~~~ik~~~~~~~~~~~~~~  215 (331)
                      ....++...+.+.+...........   .        . ...........+.+..     +...............++++
T Consensus        81 ~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (336)
T d2paja2          81 SAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPR  160 (336)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHH
T ss_pred             HHHHHHHHHHhCceeEeecceeccCcccccccchhhhhhhHHHHHHHHHHHHHHhhhhcccccceeeecccccCcccCHH
Confidence            2333455555555433222111000   0        0 0111223333333221     11223444444455567899


Q ss_pred             HHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079          216 LLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL  286 (331)
Q Consensus       216 ~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~  286 (331)
                      .++...+.+++.+.+++.|+ +...+.....        ..+...+..++.....+.....+     ..+.+....+.. 
T Consensus       161 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~l~~~~~~-  234 (336)
T d2paja2         161 EMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYGKSPVAFCGEHDWLGSDVWYAHLVKVDA-----DEIALLAQTGTG-  234 (336)
T ss_dssp             HHHHHHHHHHHTTCEEEEECC-------------CCCHHHHHHHTTCCSTTEEEESCCSCCH-----HHHHHHHHHTCE-
T ss_pred             HHHHHHhhhhccCCceeeeccccchhhHHHHHhcCCccccccccccccccccccccceecch-----HHHHHHhhcccc-
Confidence            99999999999999999997 4433333222        33566666665543333221111     123455566664 


Q ss_pred             EEEeCCC-----HHHHHHHHHHHHcCCCEEEecC
Q 020079          287 YVVHVMS-----MDAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       287 ~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                       ++||+.     ......+++++++|++|..+|.
T Consensus       235 -~~~~p~~~~~~~~~~~~~~~l~~~Gv~valGTD  267 (336)
T d2paja2         235 -VAHCPQSNGRLGSGICPVREMADAGVPVSIGVD  267 (336)
T ss_dssp             -EEECHHHHHCC-----CCTTHHHHTCCEEECCC
T ss_pred             -ceeccchhhccCccccchhhHHhcCCeEEEEcC
Confidence             666653     3456778999999999998886

>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: D-aminoacylase
domain: N-acyl-D-aminoacid amidohydrolase
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.25  E-value=1.1e-11  Score=79.29  Aligned_cols=52  Identities=29%  Similarity=0.444  Sum_probs=45.3

Q ss_pred             ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeec
Q 020079           53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP  105 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~P  105 (331)
                      .|++|+|++|+++..  ...++|+|+||||++|++... .++.++||++|++|+|
T Consensus         2 ~DllIkn~~i~d~~~~~~~~~di~I~~g~I~~Ig~~~~-~~~~~vIDa~G~~v~P   55 (55)
T d1m7ja1           2 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP   55 (55)
T ss_dssp             BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEE
T ss_pred             CcEEEECCEEECCCCCceeEEEEEEECCEEEEEccCCC-CCCCEEEECCCCEECC
Confidence            579999999999764  578899999999999998654 3467899999999998

>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=6.7e-12  Score=96.41  Aligned_cols=64  Identities=31%  Similarity=0.561  Sum_probs=58.1

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccc-ccccccccCC
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG-IDPHTHLAME  117 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~-ID~H~H~~~~  117 (331)
                      .++|+|++|++++....++|+|+||+|.+|+++...+.++++||+.|++++||. .|+|.|+..+
T Consensus         2 k~lIkng~iv~~~~~~~~DilIedG~I~~Ig~~l~~~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp   66 (142)
T d1kcxa1           2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADVVIWDP   66 (142)
T ss_dssp             CEEEESCEEECSSCEEECEEEEETTEEEEEESSCCSCSSCEEEECTTCEEECCTTSBCCEEEEEE
T ss_pred             cEEEECCEEECCCCcEEeeEEEECCEEeEEeccCCCCccceeechhhcceeecccccceEEEEec
Confidence            389999999998877889999999999999987766667899999999999998 9999999876

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

Probab=99.20  E-value=3.4e-11  Score=105.91  Aligned_cols=189  Identities=13%  Similarity=0.074  Sum_probs=110.5

Q ss_pred             ccccccccccCCCCCC--------CC----hhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecc
Q 020079          106 GGIDPHTHLAMEFMGS--------ET----IDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG  172 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~--------~~----~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  172 (331)
                      ||||+|+|+.....+.        ..    .++..+..+.+.++|||+++|+...... +.....+..++.+.+....++
T Consensus        16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~~g   95 (331)
T d1i0da_          16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG   95 (331)
T ss_dssp             CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred             CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEEEE
Confidence            9999999997653221        01    2344455677889999999998643333 333333333333334444544


Q ss_pred             ccccccC-CChhhHHHHHHHHH---HhC-------CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          173 FHMAITK-WDEVVSDEMEVMVK---EKG-------INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       173 ~~~~~~~-~~~~~~~~~~~~~~---~~g-------~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                      ++..... ..+...+++..+..   ..+       ...++..... .......+.+++.++.+++.|.++++|+......
T Consensus        96 ~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~g~pv~~h~~~~~~~  174 (331)
T d1i0da_          96 LWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTG-KATPFQELVLKAAARASLATGVPVTTHTAASQRD  174 (331)
T ss_dssp             CCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSS-SCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTH
T ss_pred             EecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeeccccc-cccHHHHHHHHHHHHHHHHhCCeEEeeccchhhh
Confidence            4422111 01112233333221   111       1123332221 1111235667888999999999999998543221


Q ss_pred             HHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079          242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC  321 (331)
Q Consensus       242 ~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~  321 (331)
                                                 ...+.+.+......+.+++++|++....++.++++++.|..++.++|||+..+
T Consensus       175 ---------------------------~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  227 (331)
T d1i0da_         175 ---------------------------GEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIG  227 (331)
T ss_dssp             ---------------------------HHHHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTT
T ss_pred             ---------------------------hhhhhhhhhhcccCCcceEEEecCCcchHHHHHHHHhcCCceeecceeeeccc
Confidence                                       12233334445555678999999877777889999999999999999998754


Q ss_pred             h
Q 020079          322 S  322 (331)
Q Consensus       322 ~  322 (331)
                      .
T Consensus       228 ~  228 (331)
T d1i0da_         228 L  228 (331)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: D-aminoacylase, catalytic domain
domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.17  E-value=2.2e-10  Score=102.45  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             ChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079          181 DEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE  257 (331)
Q Consensus       181 ~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~  257 (331)
                      +++.++.|+++++   +.|+-++.....+......+.+++.++.+.++++|.++..|..+.....               
T Consensus       103 t~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~r~~~~~~---------------  167 (358)
T d1m7ja3         103 TADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEHI---------------  167 (358)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSSTTH---------------
T ss_pred             CHHHHHHHHHHHHHHHhcCCcccccCCcccccccCCHHHHHHHHHHHHhcCCeeeeeeccccccH---------------
Confidence            3455666666664   3688888765555433445889999999999999999999974432110               


Q ss_pred             cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC---------HHHHHHHHHHHHcCCCEEEecCCccccchhhhh
Q 020079          258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---------MDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIR  326 (331)
Q Consensus       258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~---------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~  326 (331)
                                 .+.+++.+++++..|++++++|...         ...++.++.+ ++|.+|+++++|+.-.++.+.+
T Consensus       168 -----------~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a-~~G~~i~~d~yPy~ag~t~l~~  233 (358)
T d1m7ja3         168 -----------VQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAA-MASQDVSLDAYPYVAGSTMLKQ  233 (358)
T ss_dssp             -----------HHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHH-HHHSCEEEEECSCSCEEEECCC
T ss_pred             -----------HHHHHHHHHHHHHcCCceEecccccCCCcchhhHHHHHHHHHHH-hcCCCcceeecCccccccccch
Confidence                       2457778899999999999999753         1223344444 4699999999999887776644

>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.12  E-value=6.5e-11  Score=91.56  Aligned_cols=64  Identities=39%  Similarity=0.532  Sum_probs=56.7

Q ss_pred             cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecc-cccccccccCC
Q 020079           54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHTHLAME  117 (331)
Q Consensus        54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG-~ID~H~H~~~~  117 (331)
                      +++|+|++|++.+....++|+|+||+|..|+++...+.++++||+.|++++|+ ..|+|+|+..+
T Consensus         3 ~iLIkng~iv~~~~~~~~DIlI~~G~I~~I~~~i~~~~~~~iida~gk~v~i~~G~dad~~i~dp   67 (150)
T d2ftwa1           3 TILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDGDIVIWDP   67 (150)
T ss_dssp             CEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEECSTTSBCCEEEEEE
T ss_pred             CEEEECCEEECCCCcEEeeEEEECCEEEEEeccCCCCCccEEEecccceeeeecCccCceEEEec
Confidence            48999999999888888999999999999998876666789999999988655 59999999876

>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.83  E-value=1.3e-08  Score=88.14  Aligned_cols=216  Identities=14%  Similarity=0.059  Sum_probs=104.6

Q ss_pred             cccccccccccCCCC-CCC--------------------ChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHH
Q 020079          105 PGGIDPHTHLAMEFM-GSE--------------------TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEA  159 (331)
Q Consensus       105 PG~ID~H~H~~~~~~-~~~--------------------~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~  159 (331)
                      |||||+|+|+.++.. +..                    ..+...    ...+.++.+||||++|+............+.
T Consensus         1 PGlID~H~Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~~~~~~~~~~~~~   80 (325)
T d2ooda2           1 PGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEE   80 (325)
T ss_dssp             ECEEEEEEEGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCcchhhCccccccccCCCCcHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEeeccccCchhhHHHHHH
Confidence            999999999975421 111                    111111    2334568899999999865544323333334


Q ss_pred             HHHHhccceeecccc-----ccccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHH-HHHHcCCcEE
Q 020079          160 YEKKAKNSCMDYGFH-----MAITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFK-RCKSLGALAM  232 (331)
Q Consensus       160 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~-~A~~~g~~v~  232 (331)
                      ......+........     .......++.++...+..+. .....+............+.+....... .+...+..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (325)
T d2ooda2          81 ASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVN  160 (325)
T ss_dssp             HHHHTCCEEECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHhhcccceeeeeccCCCCCcccccCHHHHHHHHHHHHHhhccccceeeeeecccccccCHHHHHHHHhhHhhccCCcee
Confidence            443333322221111     11111223334444444422 2233344444444555667776655555 4455688899


Q ss_pred             EEc-CCchhhHHHH----------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH---HHHH
Q 020079          233 VHA-ENGDAVFEGQ----------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM---DAME  298 (331)
Q Consensus       233 ~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~---~~~~  298 (331)
                      .|+ +...+.....          ..+...+..+......+....     ..+...+....+.....++.+..   ....
T Consensus       161 ~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (325)
T d2ooda2         161 THISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYL-----SNNEFRRMSKKGAAVVFCPCSNLFLGSGLF  235 (325)
T ss_dssp             EECSCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTC-----CHHHHHHHHHHTCEEEECHHHHHHTTCCCC
T ss_pred             eehhccHHHHHHHHHhcccCcchHHHHHhcCcccCceeeeeeeee-----chhhhhhhhccccccccccchhhccccccC
Confidence            996 6555554443          224555555444322222111     11233455555654434332211   1112


Q ss_pred             HHH--HHHHcCCCEEEecCCccccchhhh
Q 020079          299 EIA--KARKAGPNFLNTTIPLCDSCSNII  325 (331)
Q Consensus       299 ~i~--~~~~~Gi~v~~~~~p~~~~~~~~~  325 (331)
                      ..+  .+.+.|+++..++..+......+.
T Consensus       236 ~~~~~~~~~~gv~~~~gtD~~~~~~~~~~  264 (325)
T d2ooda2         236 RLGRATDPEHRVKMSFGTDVGGGNRFSMI  264 (325)
T ss_dssp             CHHHHTCTTSCCEEEECCCBTTBSCCCHH
T ss_pred             cHHHHHHhhcCCceEeecCcccCCCccHH
Confidence            233  335789999887776554444443

>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Bacillus pasteurii [TaxId: 1474]

Probab=98.78  E-value=9.2e-09  Score=79.05  Aligned_cols=82  Identities=20%  Similarity=0.257  Sum_probs=66.3

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM  119 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~  119 (331)
                      ..+++|.|+-|++..++.+.+|-|+||||+.||+...+            .+.+++|.++|+++.||-||.|.|+...  
T Consensus        66 ~~d~vitn~~i~d~~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHFp~q--  143 (180)
T d4ubpc1          66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVK--  143 (180)
T ss_dssp             BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGTTTS--
T ss_pred             cceEEEeeEEEecCCCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhcCCC--
Confidence            35899999999998889999999999999999975321            1357899999999999999999997432  


Q ss_pred             CCCChhhHHHHHHHHHhCCceEEecCc
Q 020079          120 GSETIDDFFSGQAAALAGGTTMHIDFV  146 (331)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~  146 (331)
                          +       ..++++|+|+..-+.
T Consensus       144 ----p-------e~aLksG~tt~Gp~g  159 (180)
T d4ubpc1         144 ----A-------DRVIKGGIIAYAQIG  159 (180)
T ss_dssp             ----C-------SEEEETTEEEEEEEC
T ss_pred             ----H-------HHHHhcCceeEccCC
Confidence                1       234789999976443

>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.68  E-value=2.1e-08  Score=73.59  Aligned_cols=55  Identities=29%  Similarity=0.498  Sum_probs=47.1

Q ss_pred             CccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccc
Q 020079           52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG  107 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~  107 (331)
                      |++++|+|++|+|+..  ....+|+|++|+|++|++....+ .+++||+.|+++.||+
T Consensus         1 m~~~likng~viDp~~g~~~~~DllI~~GkI~~I~~~i~~~-~a~viD~~g~~~~~~l   57 (112)
T d1xrta1           1 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVP-EAEIIDAKGLIVCPTL   57 (112)
T ss_dssp             CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCCCS-SEEEEECTTSEEEECC
T ss_pred             CceeEEeCeEEECCCCCccceeeEEEECCEEEEeecCCCcc-cceEEehhccccccee
Confidence            4679999999999775  35789999999999999866543 4689999999999997

>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Cytosine deaminase catalytic domain
domain: Cytosine deaminase catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=5.2e-08  Score=83.83  Aligned_cols=205  Identities=15%  Similarity=0.044  Sum_probs=102.3

Q ss_pred             cccccccccCCCCC-----------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCc--HHHHH
Q 020079          107 GIDPHTHLAMEFMG-----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGS--LTAGF  157 (331)
Q Consensus       107 ~ID~H~H~~~~~~~-----------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~--~~~~~  157 (331)
                      |||+|+|+.+++.+                       ..++++++.    ..+.++++||||+.|+.......  .....
T Consensus         2 FID~H~Hl~~~~~~~~~~~~~~g~l~e~i~~~~~~~~~~t~ed~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~   81 (320)
T d1ra0a2           2 FVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM   81 (320)
T ss_dssp             EEEEEECTTTTTCTTSSSCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHH
T ss_pred             CeecCcCcchhcccCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEEeccccccchHHHHHHH
Confidence            99999998654321                       123444433    34568899999999986544331  11222


Q ss_pred             HHHHHHhcc-ceeecccc-ccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079          158 EAYEKKAKN-SCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA  235 (331)
Q Consensus       158 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~  235 (331)
                      ...+..... ..+..... ........+......+.. ..+...+..............+.++.+++.|++.|+++.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~~~~h~  160 (320)
T d1ra0a2          82 LEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEAL-RLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHC  160 (320)
T ss_dssp             HHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHH-HTTCSEECCCGGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHhhcccccccccccccccccCcHHHHHHHHHHH-HhcccccccCCCCCCCccccHHHHHHHHHHHHHcCCCeeeee
Confidence            222222111 11111111 111111223334444444 455555433222222223457889999999999999999996


Q ss_pred             -CCchhhHHH----HHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH--------------
Q 020079          236 -ENGDAVFEG----QKRMIELGITGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM--------------  294 (331)
Q Consensus       236 -e~~~~~~~~----~~~~~~~G~~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~--------------  294 (331)
                       +...+....    .............  .+........ .....+.+....+.|+.  +.+++..              
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~--~~~~p~~~~~~~~~~~~~~~~  237 (320)
T d1ra0a2         161 DEIDDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYN-GAYTSRLFRLLKMSGIN--FVANPLVNIHLQGRFDTYPKR  237 (320)
T ss_dssp             CCSSCTTCCHHHHHHHHHHHHTCGGGEEEEECGGGGGSC-HHHHHHHHHHHHHHTCE--EEECHHHHHHHTTTTCCSSCC
T ss_pred             cccchhHHHhhhhHHHHHHHhhcccccccccceeccccc-hhhhHHHHHHhhhcCcE--EEeccchhhhhcccccccccc
Confidence             443332221    1222222222211  1111111111 12234455666677765  4444321              


Q ss_pred             HHHHHHHHHHHcCCCEEEecC
Q 020079          295 DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       295 ~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ..+...+.+.++|++|...+.
T Consensus       238 ~~~~~~~~~~~~G~~v~~gtd  258 (320)
T d1ra0a2         238 RGITRVKEMLESGINVCFGHD  258 (320)
T ss_dssp             CCCCCHHHHHHTTCCEEECCB
T ss_pred             cccCchhhHhhcCceEeecCC
Confidence            133567888899999998663

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase homology protein
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=9e-07  Score=76.12  Aligned_cols=204  Identities=10%  Similarity=0.016  Sum_probs=97.1

Q ss_pred             ccccccccccCCCC--------CCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecccccc
Q 020079          106 GGIDPHTHLAMEFM--------GSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMA  176 (331)
Q Consensus       106 G~ID~H~H~~~~~~--------~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  176 (331)
                      |++|+|+|+...+.        .....+......+.+.+.||+++++....... +.....+..++.+.+.....+++..
T Consensus         6 G~~dtH~Hl~~d~~~~~~d~~~~~d~~~~~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~   85 (291)
T d1bf6a_           6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD   85 (291)
T ss_dssp             SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred             cceeeccCccCChhHhccChHhhhhhHHHHHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCc
Confidence            89999999953210        01122344455667788999999987543322 2333333333333233333333321


Q ss_pred             ccC-------CChhhHHHHHHHHHH----hCCC--eEEEEEe-cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhH
Q 020079          177 ITK-------WDEVVSDEMEVMVKE----KGIN--SFKFFMA-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF  242 (331)
Q Consensus       177 ~~~-------~~~~~~~~~~~~~~~----~g~~--~ik~~~~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~  242 (331)
                      ...       ..++..+.+.+.+.+    .+..  .++.... +........+.|++.++.|+++|+|+.+|+.......
T Consensus        86 ~~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~IGe~g~d~~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~~~~~  165 (291)
T d1bf6a_          86 AFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGL  165 (291)
T ss_dssp             GGCCTHHHHSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSHH
T ss_pred             ccCCcccCcCCHHHHHHHHHHHHHHHHhccCceEEEEEeeccccCCCCHHHHHHHHHHHHHHHHhCCCeEEeccchhhhH
Confidence            111       111112222222211    1111  2333221 1111112245688999999999999999986443333


Q ss_pred             HHHHHHHHcCCCCcccccccC--ChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHHHcCC--CEEE
Q 020079          243 EGQKRMIELGITGPEGHALSR--PPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGP--NFLN  312 (331)
Q Consensus       243 ~~~~~~~~~G~~~~~~~~~~~--~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~~~Gi--~v~~  312 (331)
                      +....+.+.|.........+.  ....      +.++.+.+.|.-+.+....+      ....+.++.+.+++-  ++.+
T Consensus       166 e~~~~l~~~~~~~~~~~~~H~~f~~~~------e~~~~~~~~G~~i~~~g~~~~~~~~~~~~~~~~~~lv~~~p~drill  239 (291)
T d1bf6a_         166 EQLALLQAHGVDLSRVTVGHCDLKDNL------DNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVML  239 (291)
T ss_dssp             HHHHHHHHTTCCGGGEEECCCCSSCCH------HHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred             HHHHHHHHhCCCcccceecccCCCCCH------HHHHHHHhcCeeEEecccccccCCcHHHhHHHHHHHHHhCCchhEEE
Confidence            444556666665443221111  1111      12233445566666655432      233355666655553  3555


Q ss_pred             ecC
Q 020079          313 TTI  315 (331)
Q Consensus       313 ~~~  315 (331)
                      +|.
T Consensus       240 eTD  242 (291)
T d1bf6a_         240 SMD  242 (291)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            555

>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Helicobacter pylori [TaxId: 210]

Probab=98.51  E-value=2.5e-07  Score=70.95  Aligned_cols=66  Identities=20%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeeccc----cccccccc
Q 020079           52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGG----IDPHTHLA  115 (331)
Q Consensus        52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~----ID~H~H~~  115 (331)
                      ..|++|.|+-|+|..++.+.+|-|+||||+.||+...+            .+.+++|.++|+++.||-    ||.|.|..
T Consensus        65 ~~D~vitna~iid~~Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h~hgI  144 (180)
T d1e9yb1          65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPAFFGV  144 (180)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTTTTTT
T ss_pred             ccceEEEeeEEeccCCeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchhhcCC
Confidence            35899999999998889999999999999999975321            135789999999999996    99999987


Q ss_pred             CC
Q 020079          116 ME  117 (331)
Q Consensus       116 ~~  117 (331)
                      .|
T Consensus       145 kP  146 (180)
T d1e9yb1         145 KP  146 (180)
T ss_dssp             CC
T ss_pred             CH
Confidence            76

>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenine deaminase-like
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.46  E-value=4.6e-07  Score=74.40  Aligned_cols=127  Identities=13%  Similarity=-0.002  Sum_probs=66.6

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccce--eecccccccc-----
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSC--MDYGFHMAIT-----  178 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----  178 (331)
                      ||||+|+|+..+  +...+++.   .+.++++||||++|+............+..........  ..........     
T Consensus         1 GlID~H~H~~~~--~~~~~~~~---~~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (267)
T d2icsa2           1 GWIDDHVHCFEK--MALYYDYP---DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELA   75 (267)
T ss_dssp             CEEEEEECCCTT--SSSSCCCH---HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTS
T ss_pred             CeEEeCcCCCCC--CCcchhhH---HHHHhCCeeEEEECCCCCChhHHHHHHHHHHhhhcchhhcccccccccccccccC
Confidence            899999999766  44455554   56789999999999876554444443333333221111  1111000000     


Q ss_pred             CCChhhHHHHHHHHHHhCCCeEEEEEec---CCCCc-CCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079          179 KWDEVVSDEMEVMVKEKGINSFKFFMAY---KGSFM-INDELLIEGFKRCKSLGALAMVHAENG  238 (331)
Q Consensus       179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~---~~~~~-~~~~~l~~~~~~A~~~g~~v~~H~e~~  238 (331)
                      .......+...... +.+.+.++.+...   ..... ...+........++..++++..|....
T Consensus        76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  138 (267)
T d2icsa2          76 DLSKVQASLVKKAI-QELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSA  138 (267)
T ss_dssp             SGGGCCHHHHHHHH-HHCTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSS
T ss_pred             ChhhcCHHHHHHHH-hhhhhhhhhhhhhhcccccccCCcHHHHHHHHHHHHhcccceeeecccc
Confidence            01111234455555 4455544433322   11112 234444555566777899999997443

>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=4.8e-07  Score=76.75  Aligned_cols=109  Identities=13%  Similarity=0.049  Sum_probs=62.0

Q ss_pred             CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079          208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY  287 (331)
Q Consensus       208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~  287 (331)
                      .....+.+.+..+.+.+++.++++..|+......... ....+.|..... +.....        +..+++..+.+..  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~--  217 (300)
T d2bb0a2         150 ETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGA-ELAGKLKAVSAD-HLVGTS--------DEGIKKLAEAGTI--  217 (300)
T ss_dssp             CTTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHH-HHHHHTTCSEEE-ECTTCC--------HHHHHHHHHHTCE--
T ss_pred             ccccCCHHHHHHHHHHHHhhhhcccccccchhhhHHH-HHHHHhCCceEE-Eeeecc--------HHHHHHHHhcCcc--
Confidence            3445688899999999999999999997543332222 222334433221 221111        2234555666665  


Q ss_pred             EEeCCCHH------HHHHHHHHHHcCCCEEEecC--Cccccchhhhhhh
Q 020079          288 VVHVMSMD------AMEEIAKARKAGPNFLNTTI--PLCDSCSNIIRMV  328 (331)
Q Consensus       288 i~H~~~~~------~~~~i~~~~~~Gi~v~~~~~--p~~~~~~~~~~~~  328 (331)
                      +.+|....      ....+++++++|++|.++|.  +..+...++...|
T Consensus       218 ~~~~~~s~~~l~~~~~~~~~~l~~~Gv~v~lgTD~~~~~~~~~~l~~~~  266 (300)
T d2bb0a2         218 AVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIM  266 (300)
T ss_dssp             EEECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHH
T ss_pred             eeecchhhhhhhccccccHHHHHHCCCEEEEEeCCCCCCCchhhHHHHH
Confidence            44543211      12457999999999998775  3333334444433

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Hypothetical protein TM0667
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=1.2e-06  Score=74.12  Aligned_cols=125  Identities=13%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccc-cCCChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  185 (331)
                      +||+|+|+...    ...++.......+..+||+.+...+... ...... ....+..+.....+++|... .....+..
T Consensus         5 lIDsH~HLd~~----~~~~d~~~vi~~a~~~gV~~ii~~~~~~-~~~~~~-~~la~~~~~i~~a~GiHP~~~~~~~~~~~   78 (260)
T d1j6oa_           5 MVDTHAHLHFH----QFDDDRNAVISSFEENNIEFVVNVGVNL-EDSKKS-LDLSKTSDRIFCSVGVHPHDAKEVPEDFI   78 (260)
T ss_dssp             EEEEEECTTSG----GGTTTHHHHHHTTTTTTEEEEEEECSSH-HHHHHH-HHHHTTCTTEEEEECCCGGGGGGCCTTHH
T ss_pred             cEEeccCCCCh----hhCcCHHHHHHHHHHCCCCEEEEecCCH-HHHHHH-HHHHHhccccccccccChhhcccccchhh
Confidence            79999999754    1223455556667889999887543211 111221 22222233445555655432 22233445


Q ss_pred             HHHHHHHHHhCCCeEEE-EEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGINSFKF-FMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~-~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +.++.+.+...+.+|.. .+++....   ....+.|++.++.|+++++|+.+|+.+
T Consensus        79 ~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~  134 (260)
T d1j6oa_          79 EHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRD  134 (260)
T ss_dssp             HHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             hhhHHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeecc
Confidence            66666653333334432 33432111   112456889999999999999999843

>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.41  E-value=3.8e-07  Score=77.27  Aligned_cols=96  Identities=11%  Similarity=0.039  Sum_probs=56.7

Q ss_pred             CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                      .....+.++.+++.+.+.|+++..|+......... ....+.+..... +.....        .....+..+.+..+..+
T Consensus       153 ~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~  222 (301)
T d2puza2         153 IAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGA-ELAASYNALSAD-HLEYLD--------ETGAKALAKAGTVAVLL  222 (301)
T ss_dssp             TSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHH-HHHHHTTCSEEE-ECTTCC--------HHHHHHHHHHTCEEEEC
T ss_pred             cccCHHHHHHHHHHHHHCCCceeeecccccchhHH-HHHhhhccceee-eeecch--------HHHHHHHHhcCCeeeec
Confidence            44578999999999999999999997554443332 222333332211 111111        12234455556654444


Q ss_pred             eCCCH----HHHHHHHHHHHcCCCEEEecC
Q 020079          290 HVMSM----DAMEEIAKARKAGPNFLNTTI  315 (331)
Q Consensus       290 H~~~~----~~~~~i~~~~~~Gi~v~~~~~  315 (331)
                      ++++.    .....+++++++|++|.++|.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~Gv~v~lGTD  252 (301)
T d2puza2         223 PGAFYALREKQLPPVQALRDAGAEIALATD  252 (301)
T ss_dssp             HHHHHHHTCCCCCCHHHHHHHTCCEEECCC
T ss_pred             cchhhhhcccccchHHHHHHCCCeEEEEeC
Confidence            43321    123458899999999998876

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=7e-06  Score=69.20  Aligned_cols=125  Identities=10%  Similarity=0.122  Sum_probs=71.1

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC-CChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  185 (331)
                      +||+|+|+....    ..++.....+.+...||+.+...+...  ..........+..+.....+++|..... ..+...
T Consensus         1 liD~H~HL~~~~----f~~d~~~vl~~a~~~gV~~ii~~~~~~--~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~~~~~   74 (260)
T d1xwya1           1 MFDIGVNLTSSQ----FAKDRDDVVACAFDAGVNGLLITGTNL--RESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATE   74 (260)
T ss_dssp             CEEEEECTTSGG----GTTTHHHHHHHHHHTTCCEEEECCCSH--HHHHHHHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred             CEEEEeCCCChH----HhCCHHHHHHHHHHCCCCEEEEecCCH--HHHHHHHHHHHhCCcccchhhcCcchhhhhhhhHH
Confidence            699999997641    234555567888999999988553211  2222233333344445556666653322 233334


Q ss_pred             HHHHHHHHHhCCCeEEE-EEecCCCCcC---CHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGINSFKF-FMAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~~~ik~-~~~~~~~~~~---~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +.+.+..+...+..|.. .+++......   ..+.+.+.++.|+++++|+.+|+..
T Consensus        75 ~~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~  130 (260)
T d1xwya1          75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRD  130 (260)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             HHHHHHHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeecc
Confidence            44555542333334433 2333211111   1356778899999999999999854

>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Zn-dependent arginine carboxypeptidase
species: Unidentified organism [TaxId: 32644]

Probab=98.32  E-value=1e-05  Score=67.46  Aligned_cols=29  Identities=14%  Similarity=-0.010  Sum_probs=22.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCch
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGD  239 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~  239 (331)
                      ........+....++..+.....|.....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (303)
T d3be7a2         144 QFTLEEMKAIVDEAHNHGMKVAAHAHGLI  172 (303)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             chhhHHHHHHHHHHHHhCcchhhhhhhhh
Confidence            44677888889999999999988875443

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YjjV
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.7e-05  Score=66.78  Aligned_cols=125  Identities=17%  Similarity=0.126  Sum_probs=67.2

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC-CChhhH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS  185 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  185 (331)
                      |||+|+|+...    ...++.......+...||+.++..+...  ...+......+..+.....++.|..... ..+...
T Consensus         5 ~ID~H~HLd~~----~~~~d~~~~l~~a~~~gV~~~v~~~t~~--~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~   78 (259)
T d1zzma1           5 FIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEA--ENFARVLALAENYQPLYAALGLHPGMLEKHSDVSL   78 (259)
T ss_dssp             EEESCBCTTST----TTTTCHHHHHHHHHHTTEEEEEEECCSG--GGHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred             EEEeCcCCCCh----hhCcCHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHhcCccccccccCCchHhhccchhhH
Confidence            79999999653    2234455556778889998877543222  2233333333343444455555543322 233333


Q ss_pred             HHHHHHHHHhCC--CeEEE-EEecCC--C-CcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          186 DEMEVMVKEKGI--NSFKF-FMAYKG--S-FMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       186 ~~~~~~~~~~g~--~~ik~-~~~~~~--~-~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      +....+......  .++.. .+++..  . .....+.+++.++.|+++++|+.+|+..
T Consensus        79 ~~~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~  136 (259)
T d1zzma1          79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR  136 (259)
T ss_dssp             HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             HHHHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHH
Confidence            444444423222  22221 222211  1 1112457888999999999999999843

>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Bacillus pasteurii [TaxId: 1474]

Probab=98.29  E-value=2e-06  Score=73.38  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHhccceeeccccccc
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAI  177 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (331)
                      |-||+|+|+..+       +.    ...+|.+||||++-.+..+..        ...-.+..+.+.....++++++.+.-
T Consensus         1 GgiDtHvHfi~P-------qq----~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkG   69 (390)
T d4ubpc2           1 GGIDTHVHFINP-------DQ----VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKG   69 (390)
T ss_dssp             CEEEEEEECCCT-------TH----HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred             CCccccccccCH-------HH----HHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhhhCCcceeeeecc
Confidence            679999999876       22    567899999999865433221        23345667777777788888776533


Q ss_pred             cCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch
Q 020079          178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD  239 (331)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~  239 (331)
                      .   ......+.+++ +.|+.++|+.-+|.    .++..+...+..|.++++.+.+|..+..
T Consensus        70 n---~s~~~~l~eqi-~aGa~GlKiHEDwG----atpa~id~~L~vad~~dvqv~iHtDtlN  123 (390)
T d4ubpc2          70 H---GSSIAPIMEQI-DAGAAGLKIHEDWG----ATPASIDRSLTVADEADVQVAIHSDTLN  123 (390)
T ss_dssp             C---CSSHHHHHHHH-HHTCCEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred             c---cCChHHHHHHH-Hhhhheeecccccc----cCHHHHHHHHHHhhccCceEEEecCCcc
Confidence            2   23345677777 78999999876654    5889999999999999999999964433

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YcfH
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=9.8e-06  Score=68.49  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=67.3

Q ss_pred             cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHH
Q 020079          107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD  186 (331)
Q Consensus       107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (331)
                      |||+|+|+...... ...++.......+...||+.++..+...  ..........+..+.....+++|...... ....+
T Consensus         3 lIDtH~Hld~~~~e-~~~~d~~~vi~~a~~~gv~~ii~~~~~~--~~~~~~~~l~~~~~~i~~~~GiHP~~~~~-~~~~e   78 (265)
T d1yixa1           3 LVDSHCHLDGLDYE-SLHKDVDDVLAKAAARDVKFCLAVATTL--PSYLHMRDLVGERDNVVFSCGVHPLNQND-PYDVE   78 (265)
T ss_dssp             EEEEEECGGGSCTT-TTCSSHHHHHHHHHHTTEEEEEECCSSH--HHHHHHHHHHCSCTTEEEEECCCTTCCSS-CCCHH
T ss_pred             EEEecccCCccccc-hhhcCHHHHHHHHHHcCCCEEEEeeCCH--HHHHHHHHHHHhccccccccccccccccc-ccchH
Confidence            79999999753101 1123455556778889998877543211  11111122222223334444554422222 22355


Q ss_pred             HHHHHHHHhCCCeEEE-EEecCCCCc---CCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          187 EMEVMVKEKGINSFKF-FMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       187 ~~~~~~~~~g~~~ik~-~~~~~~~~~---~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .+.++.....+.++.. .+++.....   ...+.+.+.++.|+++++|+.+|+.+
T Consensus        79 ~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~  133 (265)
T d1yixa1          79 DLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRD  133 (265)
T ss_dssp             HHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             HHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhh
Confidence            6666663444444432 233322111   11345788899999999999999854

>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.25  E-value=1.5e-06  Score=62.42  Aligned_cols=64  Identities=11%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             cEEEECcEEEeCCC-------ceeeeEEEeCCEEEEeeCCCCCC----CCceEEeCCCCeeecccccccccccCC
Q 020079           54 KILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAME  117 (331)
Q Consensus        54 ~~~i~n~~i~~~~~-------~~~~~v~i~~g~I~~ig~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~  117 (331)
                      +.+++|++|.++++       .+++.|+|+||+|.+||+..+.+    ...+++|++|+++.+..-..+-++-..
T Consensus         2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~   76 (103)
T d2puza1           2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWD   76 (103)
T ss_dssp             EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEEC
T ss_pred             cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEc
Confidence            47999999998763       36899999999999999976554    246899999999998888887776553

>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

Probab=98.25  E-value=6.8e-06  Score=68.92  Aligned_cols=30  Identities=13%  Similarity=0.197  Sum_probs=21.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                      ..+........+..+..+.....|......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (324)
T d2p9ba2         153 QMSVEQMRAICDEAHQYGVIVGAHAQSPEG  182 (324)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCEEEEECSHHH
T ss_pred             hccHHHHHHHHHHHHHcCCccccccccchh
Confidence            345677778888888889988888654433

>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Isoaspartyl dipeptidase, catalytic domain
domain: Isoaspartyl dipeptidase, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.7e-06  Score=71.32  Aligned_cols=46  Identities=20%  Similarity=0.020  Sum_probs=31.5

Q ss_pred             ccccccccccCCCCC-CCChhhHHHHHHHHHhCCceEEecCcCCCCC
Q 020079          106 GGIDPHTHLAMEFMG-SETIDDFFSGQAAALAGGTTMHIDFVIPING  151 (331)
Q Consensus       106 G~ID~H~H~~~~~~~-~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~  151 (331)
                      ||||+|+|+..+... ....+.....++.++++||||++|+....+.
T Consensus         1 GlID~HvHl~~~~~~~~~~~~~~~~~~~~~l~~GvTTv~d~~~~~~~   47 (284)
T d1onwa2           1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSI   47 (284)
T ss_dssp             CEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECCCSCCS
T ss_pred             CEEEeccCCCCCCCCcccchhhHHHHHHHHHhCCeEEEecCCCCCCh
Confidence            899999999765211 1123333344788899999999998754443

>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

Probab=98.22  E-value=1e-05  Score=67.82  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079          210 FMINDELLIEGFKRCKSLGALAMVHAENGDAV  241 (331)
Q Consensus       210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~  241 (331)
                      .....+.....++.+.+.+.....|.......
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
T d2r8ca2         151 FGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAI  182 (311)
T ss_dssp             BCSCHHHHHHHHHHHHHTTCCEEEEECSHHHH
T ss_pred             ccccHHHHHHHHHHHHHhccccccccchhHHH
Confidence            34567888888999999999999997654443

>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=98.21  E-value=9.2e-06  Score=68.04  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=24.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhH
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVF  242 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~  242 (331)
                      ....+........+.+++.....|........
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (310)
T d2qs8a2         149 QFTQEEVDAVVSAAKDYGMWVAVHAHGAEGMK  180 (310)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEEEECSHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCcccccccchHHHH
Confidence            34567777888889999999999976554443

>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Klebsiella aerogenes [TaxId: 28451]

Probab=98.20  E-value=3.8e-06  Score=71.60  Aligned_cols=114  Identities=13%  Similarity=0.102  Sum_probs=83.3

Q ss_pred             ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHhccceeeccccccccC
Q 020079          108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITK  179 (331)
Q Consensus       108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (331)
                      ||+|+|+..+       +.    ...+|.+||||++-.+..+..        .....+..+.+.....++++++.+.-. 
T Consensus         2 iDtHvHfi~P-------qq----~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn-   69 (385)
T d1ejxc2           2 IDTHIHWICP-------QQ----AEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGN-   69 (385)
T ss_dssp             EEEEEECSCT-------TH----HHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECC-
T ss_pred             ccccccccCH-------HH----HHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhhhCCcceeeeeccc-
Confidence            8999999876       22    567899999999965433221        234456677777777888887765332 


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                        ....+.+++++ +.|+.++|+.-+|.    .++..+...+..|.++++.+.+|..+..|
T Consensus        70 --~s~~~~l~eqi-~AGa~GlKiHEDwG----atpa~id~~L~vad~~dvqv~iHtDtlNE  123 (385)
T d1ejxc2          70 --VSQPDALREQV-AAGVIGLKIHEDWG----ATPAAIDCALTVADEMDIQVALHSDTLNE  123 (385)
T ss_dssp             --CSSHHHHHHHH-HHTCSEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTTCS
T ss_pred             --cCChHHHHHHH-HhhhceecCCcccc----cChHHHHHHHHhHhhcCceEEEecccccc
Confidence              22345667777 78999999876554    58899999999999999999999755444

>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421
species: Environmental samples

Probab=98.18  E-value=2.6e-06  Score=71.27  Aligned_cols=106  Identities=9%  Similarity=0.008  Sum_probs=57.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079          211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH  290 (331)
Q Consensus       211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H  290 (331)
                      .............++..+.++..|+........ .......+.... .+....        .++...+..+.+..  +.|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~--~~~  221 (301)
T d2q09a2         154 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLGG-STLAANFGALSV-DHLEYL--------DPEGIQALAHRGVV--ATL  221 (301)
T ss_dssp             SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCSH-HHHHHHTTCSEE-EECTTC--------CHHHHHHHHHHTCE--EEE
T ss_pred             ccchhhHHHHHHHHHHhcccceecccccchhHH-HHHHHhcCCceE-eeeecC--------cHHHHHHHHHcCCC--ccc
Confidence            345666777788888899999999733222111 112222332211 111111        12334566677765  455


Q ss_pred             CCCHH------HHHHHHHHHHcCCCEEEecC--Cccccchhhhhhh
Q 020079          291 VMSMD------AMEEIAKARKAGPNFLNTTI--PLCDSCSNIIRMV  328 (331)
Q Consensus       291 ~~~~~------~~~~i~~~~~~Gi~v~~~~~--p~~~~~~~~~~~~  328 (331)
                      |+...      ....+++++++|++|..+|.  |.+....++..+|
T Consensus       222 ~~~s~~~l~~~~~~~~~~l~~aGv~v~lGTD~~~~~~~~~~l~~~~  267 (301)
T d2q09a2         222 LPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAM  267 (301)
T ss_dssp             CHHHHHHTTCCCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHH
T ss_pred             CccHHhhhcccccCcHHHHHHCCCeEEEEeCCCCCCCCcchHHHHH
Confidence            54221      23468999999999998765  5444444444433

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=5.6e-06  Score=70.51  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=82.3

Q ss_pred             ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHhccceeeccccccccC
Q 020079          108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITK  179 (331)
Q Consensus       108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (331)
                      ||+|+|+..+       +.    ...+|.+||||++-.+..+..        .....+..+.+.....++++++.+.-..
T Consensus         2 iDtHvHfi~P-------qq----~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~   70 (389)
T d1e9yb2           2 IDTHIHFISP-------QQ----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNA   70 (389)
T ss_dssp             EEEEEETTCT-------TH----HHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred             ccccccccCH-------HH----HHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhhcCCcceeeeeccCC
Confidence            8999999876       22    567899999999865433211        2234466677777778888877654322


Q ss_pred             CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079          180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA  240 (331)
Q Consensus       180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~  240 (331)
                         .....+.+.+ +.|+.++|+.-+|    ..++..++..+..|.++++.+.+|.....|
T Consensus        71 ---s~~~~l~eqi-~aGa~GlKiHEDw----Gatp~~Id~~L~vad~~dvqv~iHtDtlNE  123 (389)
T d1e9yb2          71 ---SNDASLADQI-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNE  123 (389)
T ss_dssp             ---SCHHHHHHHH-HTTCSEEEECGGG----CCCHHHHHHHHHHHHHTTCEEEECCCTTCS
T ss_pred             ---CChHHHHHHH-Hhccceeeccccc----cCCHHHHHHHHHHHHhhCceEEecCCCccc
Confidence               2335667777 7899999986554    468899999999999999999999754433

>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=9.1e-06  Score=68.26  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCC
Q 020079          106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPI  149 (331)
Q Consensus       106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~  149 (331)
                      ||||+|+|+..+  +....++.....+.++++||||++++....
T Consensus         1 GlID~HvH~~~~--~~~~~~~~~~~~~~~l~~GvTTv~~~~~t~   42 (288)
T d1o12a2           1 GFVDPHIHGVVG--ADTMNCDFSEMEEFLYSQGVTTFLATTVST   42 (288)
T ss_dssp             CEEEEEECEETT--EETTTTCHHHHHHHHHTTTEEEEEEECCSC
T ss_pred             CeEEecccCCCC--CccccccHHHHHHHHHhCCeEEEcCCCCCC
Confidence            899999998776  444566677778899999999999875443

>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=4.3e-05  Score=63.37  Aligned_cols=42  Identities=19%  Similarity=0.068  Sum_probs=32.1

Q ss_pred             ccccccccccCC-----CCCCCChhhHHHHHHHHHhCCceEEecCcC
Q 020079          106 GGIDPHTHLAME-----FMGSETIDDFFSGQAAALAGGTTMHIDFVI  147 (331)
Q Consensus       106 G~ID~H~H~~~~-----~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~  147 (331)
                      ||||+|+|+...     .....+++.+....+.++++||||++|+..
T Consensus         1 GlID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~   47 (297)
T d1yrra2           1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLI   47 (297)
T ss_dssp             CEEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CEEeHhhCCcCCCCCCCCcccCCHHHHHHHHHHHHccCeEEEeCCCC
Confidence            899999996432     114456777777888899999999998653

>d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.00026  Score=44.62  Aligned_cols=50  Identities=18%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             EEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccc
Q 020079           56 LIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL  114 (331)
Q Consensus        56 ~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~  114 (331)
                      ++.++-|+|+-. ..-++|.+++|+|..|....-.+         ..++||||+|.|.|-
T Consensus         2 ~iE~VLIVDPidGEyTGdvEf~e~kI~~I~k~ectp---------~~ilMP~f~dg~~a~   52 (76)
T d1o12a1           2 IVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRECIP---------RGVLMPRIAEGTRAD   52 (76)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEETTEEEEEEECCSCC---------SSEEEECCSTTSBCC
T ss_pred             ceeeEEEEcCCCCcEeeeEEecCcEEEEEEEeccCC---------CeEEcccccCCcccc
Confidence            678888898764 56899999999999998743211         258999999999984

>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421
species: Environmental samples

Probab=97.28  E-value=0.00016  Score=50.66  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             cEEEECcEEEeCCC-------ceeeeEEEeCCEEEEeeCCCCCCC--CceEEeCCCCeee--ccc
Q 020079           54 KILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVM--PGG  107 (331)
Q Consensus        54 ~~~i~n~~i~~~~~-------~~~~~v~i~~g~I~~ig~~~~~~~--~~~~id~~g~~v~--PG~  107 (331)
                      +.+++|+++-++++       ++++.|.|++|+|.+|||..+.+.  ...+.|++|+++.  +|.
T Consensus         3 d~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~~~~~~~d~~gr~~tlevGk   67 (103)
T d2q09a1           3 ERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTLRVGM   67 (103)
T ss_dssp             SEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEECCTTS
T ss_pred             ceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCccccchhhhcccceEEecCCC
Confidence            47899999987653       478999999999999999766552  3467899999754  664

>d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Cytosine deaminase
domain: Cytosine deaminase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0011  Score=46.09  Aligned_cols=51  Identities=22%  Similarity=0.261  Sum_probs=38.6

Q ss_pred             EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC-CCCceEEeCCCCeeecccc
Q 020079           56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGI  108 (331)
Q Consensus        56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~-~~~~~~id~~g~~v~PG~I  108 (331)
                      .|+|+++-.-  ..-..|.|+||+|.+|.+.... ......+|++|.++.|=+|
T Consensus         4 ~I~NarL~gr--~GL~~I~I~~G~i~~I~pq~~~~~~~~d~lDa~GgL~~p~~i   55 (103)
T d1ra0a1           4 TIINARLPGE--EGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPLII   55 (103)
T ss_dssp             EEEEEBCTTC--CSEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESEEE
T ss_pred             eEEEEEeCCC--CcEEEEEecCCEEeeeecCCccccCCCcceeccCCcccCcEE
Confidence            6888887432  3456899999999999986543 3345789999999999444

>d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Adenine deaminase
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.68  E-value=0.00088  Score=46.61  Aligned_cols=45  Identities=20%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCC
Q 020079           53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGK  101 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~  101 (331)
                      .|++|+|++.+++.   ..+|.|.+|||.+||+.... ++.+++|+.|+
T Consensus         2 ~d~~i~~~~~~~g~---~~diai~~~ki~a~~~~~~~-~a~~~~~L~~~   46 (101)
T d2icsa1           2 YDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATISG-SAKETIHLEPG   46 (101)
T ss_dssp             EEEEEEEEECTTSC---EEEEEEETTEEEEEESCCCC-CEEEEEECCTT
T ss_pred             ccEEEEcceecCCC---eEEEEeccCeeeeecccccc-cchheEecCCc
Confidence            46899999987664   66899999999999986543 35789999985

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative amidohydrolase LP2961
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.04  E-value=0.016  Score=48.88  Aligned_cols=55  Identities=9%  Similarity=0.179  Sum_probs=42.3

Q ss_pred             ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      .++..+++++..++.|..++++.....+ ...+++.+..+++.|.++|++|.+|..
T Consensus       101 ~~~a~~el~r~~~~~G~~Gi~~~~~~~~-~~~~dp~~~pi~~~~~e~~lpv~~H~~  155 (306)
T d2f6ka1         101 ELDAVKTVQQALDQDGALGVTVPTNSRG-LYFGSPVLERVYQELDARQAIVALHPN  155 (306)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHTTTCEEEEECC
T ss_pred             hhHHHHHHHHHHhcccceEEEecCcccc-ccCCCccchHHHHHHHHcCCceEeccC
Confidence            3456778888775679999987654443 345667899999999999999999953

>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: Adenosine deaminase (ADA)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.036  Score=47.66  Aligned_cols=106  Identities=14%  Similarity=-0.024  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079          215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM  294 (331)
Q Consensus       215 ~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~  294 (331)
                      ..+.++++.|++.|+++.+|+......+.....+...|. .+-+|+......      ...+.++.+.++++.+|..|+.
T Consensus       192 ~~~~~~f~~ar~~gl~~t~HaGE~~~~~~i~~ai~~l~~-~RIGHG~~l~~d------~~l~~~~~~~~I~lEvCptSN~  264 (349)
T d1a4ma_         192 PGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKT-ERVGHGYHTIED------EALYNRLLKENMHFEVCPWSSY  264 (349)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESSSSCHHHHHHHHHTSCC-SEEEECGGGGGS------HHHHHHHHHTTCEEEECHHHHH
T ss_pred             HHHHHHHHHHHHcCCceeeccCCCCChHHHHHHHHHhCC-cccCCceecccC------HHHHHHhhhcCceEEEcccccc
Confidence            457789999999999999998443334433333443443 223454332211      2345677788999999987641


Q ss_pred             -----H--HHHHHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079          295 -----D--AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRM  327 (331)
Q Consensus       295 -----~--~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~  327 (331)
                           .  .--+++.+.++|++|+.+|.--....++++..
T Consensus       265 ~~~~~~~~~~HP~~~~~~~gv~v~i~TDDp~~f~t~Ls~E  304 (349)
T d1a4ma_         265 LTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTD  304 (349)
T ss_dssp             HSSSSCTTSCCHHHHHHHTTCCEEECCBCTTTTTCCHHHH
T ss_pred             cccccCchhhHHHHHHHHCCCeEEEeCCCccccCCCHHHH
Confidence                 1  12368999999999998876554444555544

>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Thermophilic reversible gamma-resorcylate decarboxylase
species: Rhizobium sp. MTP-10005 [TaxId: 267998]

Probab=95.16  E-value=0.029  Score=47.64  Aligned_cols=57  Identities=11%  Similarity=0.079  Sum_probs=42.8

Q ss_pred             ChhhHHHHHHHHHHhCCCeEEEEEecCC-----CCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          181 DEVVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .++..+++++..++.|..++++......     ....+++.+..+++.|.++|+++.+|+.+
T Consensus       106 ~~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH~~~  167 (325)
T d2dvta1         106 PDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN  167 (325)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred             cchhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEecCC
Confidence            3567788888886678888876543221     23456778999999999999999999743

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: Adenosine deaminase (ADA)
species: Plasmodium yoelii [TaxId: 5861]

Probab=93.76  E-value=0.053  Score=46.75  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEc-CCch--hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079          215 ELLIEGFKRCKSLGALAMVHA-ENGD--AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV  291 (331)
Q Consensus       215 ~~l~~~~~~A~~~g~~v~~H~-e~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~  291 (331)
                      ..+..+++.|++.|+++.+|+ |...  ......+.+...|.. .-+|+......      ...++++++.++++.+|..
T Consensus       201 ~~~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~~l~~~-RIgHGv~~~~d------~~l~~~l~~~~I~leiCPt  273 (357)
T d2amxa1         201 KDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINILNVE-RIGHGIRVSES------DELIELVKKKDILLEVCPI  273 (357)
T ss_dssp             GGGHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHHTSCCS-EEEECGGGGGC------HHHHHHHHHHTCEEEECHH
T ss_pred             hhhHHHHHHHHhcCCcccccccccCCCCChHHHHHHHHccCCc-ccccchheecC------HHHHHHHHHhCceEEECCc
Confidence            347789999999999999998 4321  222233333334443 23444432111      2345666777888888776


Q ss_pred             CCH-----HH--HHHHHHHHHcCCCEEEecCC
Q 020079          292 MSM-----DA--MEEIAKARKAGPNFLNTTIP  316 (331)
Q Consensus       292 ~~~-----~~--~~~i~~~~~~Gi~v~~~~~p  316 (331)
                      |+.     .+  ..+++.+.++|++|+.+|.-
T Consensus       274 SN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDD  305 (357)
T d2amxa1         274 SNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDD  305 (357)
T ss_dssp             HHHHTTSSSCSTTCTHHHHHHTTCEEEECCBC
T ss_pred             chhhhccCCCcccCHHHHHHHCCCeEEEeCCC
Confidence            541     11  13699999999999987763

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=93.23  E-value=0.31  Score=40.79  Aligned_cols=53  Identities=15%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      ++..++++++. +.|..++++..... ....+++.+..+++.|.++|+++.+|..
T Consensus       125 ~~a~~el~r~~-~~g~~g~~l~~~~~-~~~~~d~~~~p~~~~~~e~~~pv~iH~~  177 (331)
T d2hbva1         125 DLACKEASRAV-AAGHLGIQIGNHLG-DKDLDDATLEAFLTHCANEDIPILVHPW  177 (331)
T ss_dssp             HHHHHHHHHHH-HHTCCCEEEESCBT-TBCTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             hhhhhHHHHhh-hhcceeeeeccccc-CcccccchhhHHHHHHhccCCceEEecC
Confidence            45677788877 67888888754333 3456778999999999999999999964

>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 4-oxalomesaconate hydratase LigJ
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.84  E-value=0.29  Score=40.94  Aligned_cols=57  Identities=23%  Similarity=0.269  Sum_probs=41.8

Q ss_pred             ChhhHHHHHHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          181 DEVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .++..+++++.+++.|..+++......+    ....+++.+..+++.|.++|+++.+|...
T Consensus       121 ~~~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~glpv~~H~~~  181 (342)
T d2gwga1         121 PKTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVST  181 (342)
T ss_dssp             GGGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC
T ss_pred             HHHHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCCeEEEccCC
Confidence            3456777877775678888876543221    22356788999999999999999999754

>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=90.12  E-value=0.045  Score=40.30  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=27.7

Q ss_pred             eeeeEEEeCCEEEEeeCCCC---CCCCceEEeCCCCee
Q 020079           69 QIADVYVEDGIVVAVQPNIN---VGDDVKVLDATGKFV  103 (331)
Q Consensus        69 ~~~~v~i~~g~I~~ig~~~~---~~~~~~~id~~g~~v  103 (331)
                      +++-++|+||+|+++|+...   ..++.+++|.++++.
T Consensus        32 ~DG~llie~G~I~a~G~~~~l~~~~pga~v~d~~d~lg   69 (140)
T d2ooda1          32 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRII   69 (140)
T ss_dssp             EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEE
T ss_pred             cCcEEEEeCCEEEEecCHHHHhhcCCCceEEecCCceE
Confidence            58999999999999998532   134678999988763

>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699
species: Pseudomonas putida [TaxId: 303]

Probab=89.63  E-value=0.42  Score=37.69  Aligned_cols=44  Identities=9%  Similarity=0.047  Sum_probs=28.9

Q ss_pred             HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      ..+...++...........+...+....+.+.++++++..|...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (271)
T d2ffia1          94 RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQV  137 (271)
T ss_dssp             TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCT
T ss_pred             HhhhccceeccccccCCCcccHhHHHHHHHHHHhCCCcccccCc
Confidence            44555554333222333455677888999999999999999744

>d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Zn-dependent arginine carboxypeptidase
species: Unidentified organism [TaxId: 32644]

Probab=88.59  E-value=0.56  Score=31.59  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccc---cccccccC
Q 020079           53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI---DPHTHLAM  116 (331)
Q Consensus        53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~I---D~H~H~~~  116 (331)
                      .+++|+....++...  ....+++|++|.|.+|+.-..  .+++++...+++++|++-   ++|.++..
T Consensus         2 ~d~~~~pk~yL~~~~g~li~a~l~v~~G~i~ai~~~t~--~~A~il~l~d~illG~I~~Gk~ADlvlvd   68 (95)
T d3be7a1           2 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINT--KDATVISIPDLILIPQIKEGFDADIVGVI   68 (95)
T ss_dssp             CCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECCCC--SSSEEEEEEEEEEEESCCTTSBCCEEEES
T ss_pred             CceEecCcceeccccchhhhhhhhhhcCcHHHHHhhcc--ChHHhcCCCCccccceeccCceeeEEEEc
Confidence            357888888877553  357799999999999987322  357899999987777775   66776654

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=87.76  E-value=0.87  Score=35.43  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=24.5

Q ss_pred             ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079          108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI  143 (331)
Q Consensus       108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~  143 (331)
                      ||.|+|...+.-|..+++++   .+.|.+.|++.+.
T Consensus         3 iDlH~Ht~~S~dg~~~~~e~---v~~A~~~Gl~~ia   35 (244)
T d1m65a_           3 VDLHMHTVASTHAYSTLSDY---IAQAKQKGIKLFA   35 (244)
T ss_dssp             EECCBCCTTSTTCCCCHHHH---HHHHHHHTCCEEE
T ss_pred             eeeecCCCCCCCCcCCHHHH---HHHHHHCCCCEEE
Confidence            89999987764455566665   6777788887765

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=87.70  E-value=1.4  Score=35.43  Aligned_cols=85  Identities=13%  Similarity=0.027  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCCCCcCC-------HHHHHHHHHHHHHcCCcEE-EEcCC-ch--hhHHHHHHHHHcC
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKGSFMIN-------DELLIEGFKRCKSLGALAM-VHAEN-GD--AVFEGQKRMIELG  252 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~-------~~~l~~~~~~A~~~g~~v~-~H~e~-~~--~~~~~~~~~~~~G  252 (331)
                      ..+++++..++.|...+.+..... ....+       .+.+++.++.|++.|.+.. +|... ..  ..++..+.     
T Consensus        47 ~~~~l~~~l~~~gl~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~-----  120 (278)
T d1i60a_          47 SLDDLAEYFQTHHIKPLALNALVF-FNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKS-----  120 (278)
T ss_dssp             CHHHHHHHHHTSSCEEEEEEEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHH-----
T ss_pred             cHHHHHHHHHHcCCcEEEEecCCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCCCCHHHHHHH-----
Confidence            356677766566665443322111 11112       2445678888888888765 44321 11  11111111     


Q ss_pred             CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                                     -...+.+..+++++.|+.+.+.
T Consensus       121 ---------------~~~~l~~l~~~a~~~Gv~l~lE  142 (278)
T d1i60a_         121 ---------------SVDVLTELSDIAEPYGVKIALE  142 (278)
T ss_dssp             ---------------HHHHHHHHHHHHGGGTCEEEEE
T ss_pred             ---------------HHHHHHHHHHHHHHhCCeeeee
Confidence                           1245667778888888887774

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.48  E-value=6.2  Score=31.19  Aligned_cols=85  Identities=16%  Similarity=0.105  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHhCCCeEEEEEecCC--CCcCCHHHHHHHHHHHHHcCCcEEE-EcCCchhhHHHHHHHHHcCCCCccccc
Q 020079          184 VSDEMEVMVKEKGINSFKFFMAYKG--SFMINDELLIEGFKRCKSLGALAMV-HAENGDAVFEGQKRMIELGITGPEGHA  260 (331)
Q Consensus       184 ~~~~~~~~~~~~g~~~ik~~~~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~-H~e~~~~~~~~~~~~~~~G~~~~~~~~  260 (331)
                      ..++++++.++.|.....+......  ......+.++++++.|++.|.+... +.......                   
T Consensus        51 ~~~~~k~~l~~~gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~-------------------  111 (271)
T d2q02a1          51 NYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTI-------------------  111 (271)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBC-------------------
T ss_pred             CHHHHHHHHHHcCCcEEEeecccccCCCCHHHHHHHHHHHHHHHHcCCcEEEEecCCCCcc-------------------
Confidence            3566777766677654433221111  0011234566777888888877543 22111100                   


Q ss_pred             ccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079          261 LSRPPLLEGEATTRAIRLAEFVNTPLYVV  289 (331)
Q Consensus       261 ~~~~~~~e~~~i~~~~~l~~~~g~~~~i~  289 (331)
                        .+...-.+.+.+..+++++.|+.+.+.
T Consensus       112 --~~~~~~~~~l~~l~~~a~~~gv~l~lE  138 (271)
T d2q02a1         112 --VPPEVTVEAIKRLSDLFARYDIQGLVE  138 (271)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred             --chHHHHHHHHHHHHHHhccCCeEEEEe
Confidence              111111345677778888888877664

>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=81.24  E-value=7.7  Score=31.74  Aligned_cols=109  Identities=13%  Similarity=0.005  Sum_probs=64.8

Q ss_pred             CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHHh----ccceeeccccccccCCChhhHHHHHHHHHH
Q 020079          122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKA----KNSCMDYGFHMAITKWDEVVSDEMEVMVKE  194 (331)
Q Consensus       122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (331)
                      .+++++...+.....+|+=-+-|-....+.   ...+.+....+..    ....-...+...++...++..+..+... +
T Consensus        32 ls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~NiT~~~~em~~ra~~a~-~  110 (307)
T d1geha1          32 YSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLA-D  110 (307)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBCCSSHHHHHHHHHHHH-H
T ss_pred             CCHHHHHHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEccCChHHHHHHHHHHH-H
Confidence            578888888888999999999876543332   4455444333322    1111111222233434444455554444 6


Q ss_pred             hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079          195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE  236 (331)
Q Consensus       195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e  236 (331)
                      .|...+-+  ++   ....-..++.+.+.+++.+++++.|..
T Consensus       111 ~G~~~vmi--~~---~~~G~~al~~lr~~~~~~~lpIh~H~A  147 (307)
T d1geha1         111 LGLKHAMV--DV---VITGWGALRYIRDLAADYGLAIHGHRA  147 (307)
T ss_dssp             HTCCEEEE--EH---HHHCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             cCCCEEEE--ec---cccchHHHHHHHHhhccCCeEEEeccc
Confidence            78877633  32   123456777888888899999999953

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=80.74  E-value=2.9  Score=34.39  Aligned_cols=50  Identities=14%  Similarity=0.307  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhCCCeEEEEEec-CCCC------cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079          185 SDEMEVMVKEKGINSFKFFMAY-KGSF------MINDELLIEGFKRCKSLGALAMVHAEN  237 (331)
Q Consensus       185 ~~~~~~~~~~~g~~~ik~~~~~-~~~~------~~~~~~l~~~~~~A~~~g~~v~~H~e~  237 (331)
                      .++..+++++.|++.+-+.++. |+.+      ..+.+.++++-   +..+.|+..|..+
T Consensus       155 peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~---~~~~~PLVlHGgS  211 (305)
T d1rvga_         155 PEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIA---RLVPAPLVLHGAS  211 (305)
T ss_dssp             HHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHH---HHCCSCEEECSCC
T ss_pred             HHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHH---hccCCCeeccCCc
Confidence            4667777767899988665432 3332      24556666654   4578999999754