Citrus Sinensis ID: 020135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS
ccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEccccHHHHcccc
cccHHHHHHHHHHHHHHHHcccccccccccHcHHHHHHHHHccccHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEccccEEEEEcccccccccEEccEEEEEEccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEEccHHHHHccccc
MRKVNWAIALHLGALRqlessssishrnpllhqrwfvqraaatpslsnfrsYSTEMLSNDLIKIMEQRVLAIERRSACLEnlvnqpeaspaeYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKsllpkddaderdcilevragtggeeaSLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASaaisgvgvygklkfesgihrvqrvplteksgrvhtsaVSVAilpqadevdvrlrnedlridtyrsggsggqhanttnsavrvthiptgmtisIQDERSQHMVKDS
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAatpslsnfrsYSTEMLSNDLIKIMEQRVLAIERRSACLEnlvnqpeaspaeySKANKELRKLRDSMHLISElrtkqkeidGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKsllpkddaderDCILevragtggeeasLFAVDVFKMYErysqkkgwkfeVVGVTESDLRGYKEasaaisgvgvygKLKFESGIHRvqrvplteksgrvhtsavsvailpqadevdvrLRNEDLRIdtyrsggsggqhanttnsavrvtHIPTGmtisiqdersqhmvkds
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRlqslllksllPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS
******************************LHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENL*************************************IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRI*********************************************
***VNWAIALHLGALRQ**********NPLLHQRWFVQRAAATPSLSNFRS*S*******LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL*********LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQD**********
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS********NTTNSAVRVTHIPTGMTISIQD**********
*RKVNWAIALHLGALRQLESS**I****PLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query330 2.2.26 [Sep-21-2011]
C3PNN0355 Peptide chain release fac yes no 0.790 0.735 0.474 7e-71
A8GSC7355 Peptide chain release fac yes no 0.790 0.735 0.474 9e-71
B0BXT9355 Peptide chain release fac yes no 0.790 0.735 0.474 9e-71
C4K0C9355 Peptide chain release fac yes no 0.790 0.735 0.474 1e-70
A8F1S1361 Peptide chain release fac yes no 0.790 0.722 0.474 1e-70
Q92HK9355 Peptide chain release fac yes no 0.790 0.735 0.474 2e-70
Q4ULG0355 Peptide chain release fac yes no 0.718 0.667 0.514 2e-70
A8GNQ4355 Peptide chain release fac yes no 0.718 0.667 0.514 3e-70
Q1RJT5357 Peptide chain release fac yes no 0.718 0.663 0.523 6e-70
A8GXI1357 Peptide chain release fac yes no 0.718 0.663 0.523 7e-70
>sp|C3PNN0|RF1_RICAE Peptide chain release factor 1 OS=Rickettsia africae (strain ESF-5) GN=prfA PE=3 SV=1 Back     alignment and function desciption
 Score =  267 bits (683), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)

Query: 57  LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
            S++L KI+++            ENL N+  +     E+ KA+KE  +L D +  I E  
Sbjct: 3   FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51

Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
             + E++   +   E   D   L+M  +E+    +   +L+  +  +LLPKDDAD +  I
Sbjct: 52  KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111

Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
           +EVRAG+GGEEA+LFA  +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G  V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171

Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
            KLKFESG+HRVQRVP TE  GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231

Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
           GQH NTT+SAVR+THIPTG+T+++QDE+SQH  K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
Rickettsia africae (strain ESF-5) (taxid: 347255)
>sp|A8GSC7|RF1_RICRS Peptide chain release factor 1 OS=Rickettsia rickettsii (strain Sheila Smith) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B0BXT9|RF1_RICRO Peptide chain release factor 1 OS=Rickettsia rickettsii (strain Iowa) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|C4K0C9|RF1_RICPU Peptide chain release factor 1 OS=Rickettsia peacockii (strain Rustic) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8F1S1|RF1_RICM5 Peptide chain release factor 1 OS=Rickettsia massiliae (strain Mtu5) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q92HK9|RF1_RICCN Peptide chain release factor 1 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q4ULG0|RF1_RICFE Peptide chain release factor 1 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GNQ4|RF1_RICAH Peptide chain release factor 1 OS=Rickettsia akari (strain Hartford) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain RML369-C) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU 85-389) GN=prfA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
255548277422 peptide chain release factor, putative [ 0.969 0.758 0.746 1e-136
225437801392 PREDICTED: peptide chain release factor 0.869 0.732 0.807 1e-127
449435146426 PREDICTED: peptide chain release factor 0.927 0.718 0.711 1e-123
224130870358 predicted protein [Populus trichocarpa] 0.8 0.737 0.833 1e-122
297828437410 hypothetical protein ARALYDRAFT_904175 [ 0.842 0.678 0.786 1e-122
42569997413 Peptide chain release factor 1 [Arabidop 0.842 0.673 0.786 1e-122
356503962415 PREDICTED: peptide chain release factor 0.930 0.739 0.687 1e-121
3522941395 putative peptide chain release factor [A 0.818 0.683 0.735 1e-117
356571023379 PREDICTED: LOW QUALITY PROTEIN: peptide 0.818 0.712 0.75 1e-116
218196470368 hypothetical protein OsI_19275 [Oryza sa 0.833 0.747 0.705 1e-112
>gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis] gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/331 (74%), Positives = 284/331 (85%), Gaps = 11/331 (3%)

Query: 2   RKVNWAIALHLGALRQLESSSSIS-HRNPLLHQRWFVQRAAATPSLSNFRSYSTEM---L 57
           R +NWAI       +QL+ SS+I+ H++  + +  F+  A A  S    R+YSTE+   L
Sbjct: 5   RGLNWAI-------KQLQFSSAITWHQSHSIRESSFLGSAIANASHLFSRAYSTELQSHL 57

Query: 58  SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQ 117
           S DLI+IMEQR+ AIE RSA LEN +++ EASPAEYS+ANKELRKLR  + LISELR+ Q
Sbjct: 58  SPDLIRIMEQRLSAIEHRSAYLENFIDKLEASPAEYSRANKELRKLRRPVELISELRSIQ 117

Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
           KEIDGL+SL+ EC EDK M+DMA EEL  AI+EEKRLQ++LLKSLLP DDADERDCILEV
Sbjct: 118 KEIDGLRSLMAECPEDKHMIDMANEELNQAIEEEKRLQNVLLKSLLPTDDADERDCILEV 177

Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
           RAGTGGEEASLF++D+F+MYERYSQKKGWKFEVV +TESDL+GYKEASAAISG GV+GKL
Sbjct: 178 RAGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDITESDLKGYKEASAAISGAGVFGKL 237

Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
           KFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQH
Sbjct: 238 KFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQH 297

Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
           ANTTNSAVRVTH+PTGMT+SIQDERSQHM K
Sbjct: 298 ANTTNSAVRVTHLPTGMTVSIQDERSQHMNK 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437801|ref|XP_002274067.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera] gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435146|ref|XP_004135356.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] gi|449503299|ref|XP_004161933.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224130870|ref|XP_002320945.1| predicted protein [Populus trichocarpa] gi|222861718|gb|EEE99260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297828437|ref|XP_002882101.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] gi|297327940|gb|EFH58360.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42569997|ref|NP_182225.3| Peptide chain release factor 1 [Arabidopsis thaliana] gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana] gi|330255695|gb|AEC10789.1| Peptide chain release factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503962|ref|XP_003520768.1| PREDICTED: peptide chain release factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|3522941|gb|AAC34223.1| putative peptide chain release factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356571023|ref|XP_003553681.1| PREDICTED: LOW QUALITY PROTEIN: peptide chain release factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group] gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
TAIR|locus:2041409413 AT2G47020 [Arabidopsis thalian 0.848 0.677 0.753 5.3e-111
TIGR_CMR|NSE_0406367 NSE_0406 "peptide chain releas 0.769 0.692 0.450 6.6e-58
TIGR_CMR|ECH_0597359 ECH_0597 "peptide chain releas 0.757 0.696 0.458 5.9e-57
TIGR_CMR|APH_0420359 APH_0420 "peptide chain releas 0.757 0.696 0.458 9.6e-57
UNIPROTKB|P0A7I0360 prfA "peptide chain release fa 0.727 0.666 0.453 6.1e-55
DICTYBASE|DDB_G0283175430 prfA "peptide chain release fa 0.775 0.595 0.436 7.8e-55
UNIPROTKB|Q9KQ25362 prfA "Peptide chain release fa 0.769 0.701 0.419 1.3e-54
TIGR_CMR|VC_2179362 VC_2179 "peptide chain release 0.769 0.701 0.419 1.3e-54
TIGR_CMR|CBU_1965361 CBU_1965 "peptide chain releas 0.709 0.648 0.447 5.5e-54
TIGR_CMR|CHY_2563358 CHY_2563 "peptide chain releas 0.769 0.709 0.422 7e-54
TAIR|locus:2041409 AT2G47020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 214/284 (75%), Positives = 246/284 (86%)

Query:    47 SNF-RSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRK 102
             SN  R Y+T M   LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRK
Sbjct:    34 SNMIRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRK 93

Query:   103 LRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXX 162
             LRDSM LI++LR KQKEIDGLKSL+ E S+DKDMLD+A  EL  A++EEKR         
Sbjct:    94 LRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSL 153

Query:   163 XPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
              PKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V +TESD++GYK
Sbjct:   154 LPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYK 213

Query:   223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
             EASAAI G  VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNED
Sbjct:   214 EASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNED 273

Query:   283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
             LRIDTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHM
Sbjct:   274 LRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHM 317
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006415 "translational termination" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
TIGR_CMR|NSE_0406 NSE_0406 "peptide chain release factor 1" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0597 ECH_0597 "peptide chain release factor 1" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0420 APH_0420 "peptide chain release factor 1" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7I0 prfA "peptide chain release factor RF1" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283175 prfA "peptide chain release factor 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQ25 prfA "Peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2179 VC_2179 "peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1965 CBU_1965 "peptide chain release factor 1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2563 CHY_2563 "peptide chain release factor 1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8GXI1RF1_RICB8No assigned EC number0.52320.71810.6638yesno
Q2RWE1RF1_RHORTNo assigned EC number0.53380.70300.6553yesno
Q4ULG0RF1_RICFENo assigned EC number0.51470.71810.6676yesno
Q5PAH2RF1_ANAMMNo assigned EC number0.50400.74840.6880yesno
Q68WK7RF1_RICTYNo assigned EC number0.51890.71810.6676yesno
B9KIV2RF1_ANAMFNo assigned EC number0.50400.74840.6880yesno
Q9ZD21RF1_RICPRNo assigned EC number0.50210.71810.6676yesno
A8GNQ4RF1_RICAHNo assigned EC number0.51470.71810.6676yesno
Q1RJT5RF1_RICBRNo assigned EC number0.52320.71810.6638yesno
B9JT13RF1_AGRVSNo assigned EC number0.51350.74840.6880yesno
A8EYR1RF1_RICCKNo assigned EC number0.50210.71810.6676yesno
Q3SVP7RF1_NITWNNo assigned EC number0.50850.70300.6480yesno
B8EI32RF1_METSBNo assigned EC number0.51880.70600.6472yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 1e-123
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 1e-112
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 1e-97
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 5e-63
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 5e-56
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 5e-48
smart00937116 smart00937, PCRF, This domain is found in peptide 2e-45
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 3e-45
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 2e-43
pfam03462115 pfam03462, PCRF, PCRF domain 2e-41
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 1e-40
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 3e-38
pfam00472114 pfam00472, RF-1, RF-1 domain 4e-23
PRK08179200 PRK08179, prfH, peptide chain release factor-like 7e-15
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 8e-15
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information 
 Score =  356 bits (916), Expect = e-123
 Identities = 131/265 (49%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 63  KIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
             M  ++ A+E R   LE L++ PE  +    + K +KE  +L   +    E +  Q+++
Sbjct: 2   PSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDL 61

Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
           +  K ++ E   D +M +MA EEL    +  + L+  L   LLPKD  D+++ ILE+RAG
Sbjct: 62  EEAKEML-EEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAG 120

Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
           TGG+EA+LFA D+F+MY RY++++GWK E++  +E +L GYKE  A ISG GVY KLKFE
Sbjct: 121 TGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFE 180

Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
           SG+HRVQRVP TE  GR+HTSA +VA+LP+A+EV+V +  +DLRIDT+RS G+GGQH NT
Sbjct: 181 SGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNT 240

Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
           T+SAVR+TH+PTG+ +  QDERSQH
Sbjct: 241 TDSAVRITHLPTGIVVECQDERSQH 265

Length = 359
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 330
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 99.89
PRK09256138 hypothetical protein; Provisional 99.77
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.09
PRK10636638 putative ABC transporter ATP-binding protein; Prov 88.21
PF1045866 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin 86.13
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 86.1
PRK10884206 SH3 domain-containing protein; Provisional 82.69
PRK11546143 zraP zinc resistance protein; Provisional 81.65
PRK11147635 ABC transporter ATPase component; Reviewed 81.47
PRK10869553 recombination and repair protein; Provisional 80.65
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7e-96  Score=700.73  Aligned_cols=266  Identities=49%  Similarity=0.801  Sum_probs=260.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 020135           64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT  141 (330)
Q Consensus        64 ~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~  141 (330)
                      .|..||+++..||++|+.+|++|++  |++++++++||+++|+++++.|.+|++..++++++++|+.++ .|+||++||+
T Consensus         4 ~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~   82 (363)
T COG0216           4 SLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAE   82 (363)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHH
Confidence            4678999999999999999999996  999999999999999999999999999999999999999873 7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCc
Q 020135          142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY  221 (330)
Q Consensus       142 eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~  221 (330)
                      +|+..++.++..|+++|..+|||+||+|++|||||||||+||+||++||++||+||.+||+.+||++++++.++++.|||
T Consensus        83 ~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~  162 (363)
T COG0216          83 EEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGY  162 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCcc-ccccCCCCeEEEEeeecCCCCCCCcc
Q 020135          222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANT  300 (330)
Q Consensus       222 k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~-~~~i~~~dl~i~~~RssG~GGQ~VNk  300 (330)
                      |++++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||+++++ +++|+|+||+||||||||||||||||
T Consensus       163 kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNt  242 (363)
T COG0216         163 KEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNT  242 (363)
T ss_pred             eEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999875 79999999999999999999999999


Q ss_pred             cCceEEEEEeCCeeEEEecCccChhhhhcC
Q 020135          301 TNSAVRVTHIPTGMTISIQDERSQHMVKDS  330 (330)
Q Consensus       301 t~saVritH~PTGi~v~~~~eRSQ~~Nk~~  330 (330)
                      |+|||||||+||||+|+||+|||||+||+|
T Consensus       243 TdSAVRiTHlPTGIvV~cQderSQ~kNk~k  272 (363)
T COG0216         243 TDSAVRITHLPTGIVVECQDERSQHKNKAK  272 (363)
T ss_pred             cchhheeeecCCceEEEecchhhhhhhHHH
Confidence            999999999999999999999999999975

>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK11546 zraP zinc resistance protein; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 2e-58
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 5e-52
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 6e-52
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 7e-51
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 3e-41
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 5e-37
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 5e-37
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 6e-36
3f1e_X378 Crystal Structure Of A Translation Termination Comp 9e-30
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 1e-29
2wh1_Y351 Insights Into Translational Termination From The St 1e-29
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 1e-29
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 2e-29
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 161/237 (67%), Gaps = 5/237 (2%)
Query: 93  YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
           +   ++E  +L D     ++ +  Q++I+  + ++    +D +M +MA +EL  A ++ +
Sbjct: 35  FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSE 90
Query: 153 RXXXXXXXXXXPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
           +          PKD  DER+  LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ 
Sbjct: 91  QLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
            +E +  GYKE  A ISG GVYG+LKFESG HRVQRVP TE  GR+HTSA +VA++P+  
Sbjct: 151 ASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDVRLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
           + ++   N  DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ +  QDERSQH  K
Sbjct: 211 DAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 1e-121
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 1e-118
2b3t_B360 RF-1, peptide chain release factor 1; translation 1e-117
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 1e-111
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 5e-64
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 1e-63
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 3e-40
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 1e-07
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 6e-06
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
 Score =  351 bits (904), Expect = e-121
 Identities = 99/276 (35%), Positives = 170/276 (61%), Gaps = 3/276 (1%)

Query: 53  STEMLSNDLIK-IMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHL 109
            ++ + +      +  ++ A+E R   L  L++ P+  +    + + ++E    R+++ +
Sbjct: 2   GSDKIHHHHHHMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAV 61

Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
             E +   + I   + +I + S D ++ +MA EEL  +   ++  +  L   LLPKD  D
Sbjct: 62  YREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPND 121

Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
           +++ ILE+R   GG+EA+LFA D+  MY++Y++ +GWKFEV+  + + + G KE  A +S
Sbjct: 122 DKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVS 181

Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
           G  VY KLK+ESG HRVQRVP+TE  GRVHTS  +V ++P+ +EV+  +  +DLR+D Y 
Sbjct: 182 GQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYH 241

Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
           + G+GGQ+ N   +AVR+ H+PT + + +Q+ER+Q 
Sbjct: 242 ASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQ 277
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.88
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.88
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.83
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 95.99
3err_A 536 Fusion protein of microtubule binding domain from 83.21
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
Probab=100.00  E-value=7e-87  Score=647.57  Aligned_cols=261  Identities=42%  Similarity=0.711  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 020135           65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE  142 (330)
Q Consensus        65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~e  142 (330)
                      |.+|++.+.+|+++|+.++++|+|  |++++++++||++.|+++++.|++|....+|+.++.+|+.    |+||+++|++
T Consensus         1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~   76 (354)
T 3d5a_X            1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKA   76 (354)
T ss_dssp             CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence            357999999999999999999998  9999999999999999999999999999999999999984    8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCce
Q 020135          143 ELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK  222 (330)
Q Consensus       143 El~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k  222 (330)
                      |+..++++++.++.+|...|||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||
T Consensus        77 e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k  156 (354)
T 3d5a_X           77 EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFS  156 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcccC
Q 020135          223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN  302 (330)
Q Consensus       223 ~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~  302 (330)
                      +|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+
T Consensus       157 ~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~  236 (354)
T 3d5a_X          157 KVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD  236 (354)
T ss_dssp             EEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred             EEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeCCeeEEEecCccChhhhhc
Q 020135          303 SAVRVTHIPTGMTISIQDERSQHMVKD  329 (330)
Q Consensus       303 saVritH~PTGi~v~~~~eRSQ~~Nk~  329 (330)
                      |||||||+||||+|+||++|||++||+
T Consensus       237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~  263 (354)
T 3d5a_X          237 SAVRVVHLPTGIMVTCQDSRSQIKNRE  263 (354)
T ss_dssp             CEEEEEETTTTEEEEECCSSCHHHHHH
T ss_pred             ceEEEEEcCCeEEEEECCCCCHHHHHH
Confidence            999999999999999999999999996
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 330
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 2e-47
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 1e-40
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 1e-35
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 2e-09
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  161 bits (409), Expect = 2e-47
 Identities = 83/259 (32%), Positives = 140/259 (54%), Gaps = 8/259 (3%)

Query: 71  AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
           A + R   +   + QP+    P       KE   L   +  + +++   +++ G    + 
Sbjct: 26  AKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSG----LL 81

Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
           E + + D  +   E +   +D  +   + L    +   + D  DC L+++AG+GG EA  
Sbjct: 82  ELAVEADDEETFNEAVA-ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQD 140

Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
           +A  + +MY R+++ +G+K E++  +E ++ G K  +  ISG   YG L+ E+G+HR+ R
Sbjct: 141 WASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVR 200

Query: 249 VPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
               +  GR HTS  S  + P+ D+ +D+ +   DLRID YR+ G+GGQH N T SAVR+
Sbjct: 201 KSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRI 260

Query: 308 THIPTGMTISIQDERSQHM 326
           THIPTG+    Q++RSQH 
Sbjct: 261 THIPTGIVTQCQNDRSQHK 279
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.66
d1ivsa166 Valyl-tRNA synthetase (ValRS) C-terminal domain {T 80.42
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-90  Score=671.86  Aligned_cols=256  Identities=34%  Similarity=0.572  Sum_probs=247.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 020135           69 VLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL  146 (330)
Q Consensus        69 Le~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~  146 (330)
                      ++.+++|+++||.++++|+|  |+++|++++||++.|+++++.|+.|....+|++++.+|+.+ ++|++|.+++..++..
T Consensus        24 ld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~e-e~deel~~e~~~~l~~  102 (362)
T d1gqea_          24 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELDA  102 (362)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHH
Confidence            56778899999999999999  99999999999999999999999999999999999999876 4789999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEE
Q 020135          147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA  226 (330)
Q Consensus       147 l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~  226 (330)
                      +.+.+++++    ..++|+||+|.+||||||+||+||+||++||+||||||+|||+++||++++++..+++.+|||+|++
T Consensus       103 l~~~l~~le----~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~gG~K~v~~  178 (362)
T d1gqea_         103 LEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTI  178 (362)
T ss_dssp             HHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEE
T ss_pred             HhhhhhHHH----HhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCCeEEEeccccCCccceeEEEE
Confidence            888887666    8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCC-CccccccCCCCeEEEEeeecCCCCCCCcccCceE
Q 020135          227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA-DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV  305 (330)
Q Consensus       227 ~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~-~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saV  305 (330)
                      .|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+. ++++++|+++||+|+|||||||||||||||+|||
T Consensus       179 ~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~sav  258 (362)
T d1gqea_         179 KISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAV  258 (362)
T ss_dssp             EEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEE
T ss_pred             EEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCCccceecChHHeEEEEeecCCCCccchhhhhcee
Confidence            999999999999999999999999999999999999999999997 5689999999999999999999999999999999


Q ss_pred             EEEEeCCeeEEEecCccChhhhhc
Q 020135          306 RVTHIPTGMTISIQDERSQHMVKD  329 (330)
Q Consensus       306 ritH~PTGi~v~~~~eRSQ~~Nk~  329 (330)
                      ||||+||||+|+||++||||+||+
T Consensus       259 ri~H~ptgi~v~~q~ersq~~Nk~  282 (362)
T d1gqea_         259 RITHIPTGIVTQCQNDRSQHKNKD  282 (362)
T ss_dssp             EEEETTTCCEEEECSSSCHHHHHH
T ss_pred             EEEecCchhHHHhhhcchhhHHHH
Confidence            999999999999999999999996
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure