Citrus Sinensis ID: 020411

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
ccccccccccccEEEEccccccHHHHHccccHHHHHHHHHHHHcccccccEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcc
ccEEEEcccccEEEEEccccccHHHHHHHccHHHHHHHHHcccccHHccEEcccccccccccHHHHHHHHHHccccHHHHHHHHHcccccccEEEHEEHcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHcccccEEEEEEEEcccccccccHHEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEcccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHcccccccccccccHEEEcccccEEEcccccccccccc
meltsefrgseiielknfspasvddIASVHARAYVSGLEKAMDRASQQGIILiegsgptyatATTFQESLAAAGAGIALVDSVaasknrpdpplgfalirppghhaipkgpmgfcvFGNVAIAARYAQRAHGLKRVFIIDfdvhhgngtndafyddpdifflsthqdgsypgtgkidevgrgdgegstlnlplpggsgdtaMRTVFHEVIVpcaqrfkpdlilvsagydahvldplaslqftTGTYYMLAANIKQLAKDLcgsrcvffleggynlnslsYSVADSFRaflgepskasefdnpailyeepsaKVKQAIERVKHIHSL
meltsefrgseiielknfspasvddIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
************IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVA*********LGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ*********************************TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG***********************************
*******RGSEIIELKNFSPASVDDIASVHARAYVSGLEKAM******G*ILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKAS***********PSAKVKQAIERVKHIHSL
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIE********
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MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query326 2.2.26 [Sep-21-2011]
Q941D6423 Histone deacetylase 14 OS yes no 0.996 0.768 0.794 1e-153
O30107359 Uncharacterized protein A yes no 0.938 0.852 0.377 3e-50
Q20296 955 Histone deacetylase 6 OS= no no 0.650 0.221 0.418 8e-45
O27262331 Uncharacterized protein M yes no 0.806 0.794 0.387 1e-44
Q6P3E7 666 Histone deacetylase 10 OS yes no 0.809 0.396 0.379 2e-44
Q969S8 669 Histone deacetylase 10 OS yes no 0.809 0.394 0.382 4e-44
P53973 706 Histone deacetylase HDA1 yes no 0.895 0.413 0.316 7e-43
P830381080 Histone deacetylase 4 OS= yes no 0.736 0.222 0.394 6e-42
Q70I53369 Histone deacetylase-like N/A no 0.819 0.723 0.351 7e-42
Q9Z2V5 1149 Histone deacetylase 6 OS= no no 0.809 0.229 0.374 1e-41
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1 Back     alignment and function desciption
 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/326 (79%), Positives = 290/326 (88%), Gaps = 1/326 (0%)

Query: 2   ELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYA 61
           ELT +FRGS+I+EL NF  A+V+DIA+VH +AYV GLEKAMD AS  G+I IEGSGPTYA
Sbjct: 98  ELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGSGPTYA 157

Query: 62  TATTFQESLAAAGAGIALVDSV-AASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNV 120
           T+TTFQ+SL AAGAG+ALVDSV AAS+N  DPP+GFALIRPPGHHA+PKGPMGFCVFGNV
Sbjct: 158 TSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNV 217

Query: 121 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVG 180
           AIAAR+AQR HGLKR+FIIDFDVHHGNGTNDAF +DPDIFFLSTHQDGSYPGTGKI ++G
Sbjct: 218 AIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYPGTGKISDIG 277

Query: 181 RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQ 240
           +G GEG+TLNLPLPGGSGD AMRTVF E+IVPCAQRFKPD+ILVSAGYDAHVLDPLA+LQ
Sbjct: 278 KGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQ 337

Query: 241 FTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD 300
           FTT TYY LA +IK+LAK++CG RCVFFLEGGYNL SLS SVADSFRA LGE S ASEFD
Sbjct: 338 FTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGEDSLASEFD 397

Query: 301 NPAILYEEPSAKVKQAIERVKHIHSL 326
           NPA LY+EP  KV+ AI+R K IH L
Sbjct: 398 NPAYLYDEPMRKVRDAIQRAKSIHCL 423
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0130 PE=3 SV=1 Back     alignment and function description
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2 Back     alignment and function description
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1 Back     alignment and function description
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2 Back     alignment and function description
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1 Back     alignment and function description
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HDA1 PE=1 SV=1 Back     alignment and function description
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1 Back     alignment and function description
>sp|Q70I53|HDAH_ALCSD Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3 Back     alignment and function description
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
225431711 437 PREDICTED: histone deacetylase 14 [Vitis 1.0 0.745 0.880 1e-167
255550502425 Histone deacetylase, putative [Ricinus c 1.0 0.767 0.856 1e-165
388514335413 unknown [Lotus japonicus] 1.0 0.789 0.847 1e-163
224083458390 histone deacetylase [Populus trichocarpa 0.996 0.833 0.855 1e-163
449461867 442 PREDICTED: histone deacetylase 14-like [ 1.0 0.737 0.831 1e-161
449507477 442 PREDICTED: histone deacetylase 14-like [ 1.0 0.737 0.831 1e-161
357519987420 Histone deacetylase [Medicago truncatula 1.0 0.776 0.825 1e-160
356512844417 PREDICTED: histone deacetylase 14-like [ 1.0 0.781 0.828 1e-160
18418220423 histone deacetylase 14 [Arabidopsis thal 0.996 0.768 0.794 1e-152
297798586421 hypothetical protein ARALYDRAFT_913072 [ 0.996 0.771 0.797 1e-151
>gi|225431711|ref|XP_002267516.1| PREDICTED: histone deacetylase 14 [Vitis vinifera] gi|296088531|emb|CBI37522.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/327 (88%), Positives = 307/327 (93%), Gaps = 1/327 (0%)

Query: 1   MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY 60
           MEL+  FRGSEI+EL +FSPASV+DIASVH +AYVSGLEK+MD+ASQ+GII I+GSGPTY
Sbjct: 111 MELSPMFRGSEILELHSFSPASVEDIASVHTKAYVSGLEKSMDQASQKGIIYIDGSGPTY 170

Query: 61  ATATTFQESLAAAGAGIALVDSV-AASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGN 119
           ATATTFQESL AAGAGI LVDSV AASK+  DPP+GFALIRPPGHHAIPKGPMGFCVFGN
Sbjct: 171 ATATTFQESLLAAGAGITLVDSVVAASKSSQDPPMGFALIRPPGHHAIPKGPMGFCVFGN 230

Query: 120 VAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV 179
           VAIAARYAQR HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV
Sbjct: 231 VAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV 290

Query: 180 GRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASL 239
           G G GEG+TLNLPLPGGSGD AMRTVF EVIVP AQRFKPD+ILVSAGYD HVLDPLASL
Sbjct: 291 GHGSGEGATLNLPLPGGSGDIAMRTVFDEVIVPSAQRFKPDIILVSAGYDGHVLDPLASL 350

Query: 240 QFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEF 299
           QFTTGTYYMLA+NIKQLAKDLCG RCVFFLEGGYNL+SLSYSVADSFRAFLGEPS ASEF
Sbjct: 351 QFTTGTYYMLASNIKQLAKDLCGGRCVFFLEGGYNLSSLSYSVADSFRAFLGEPSLASEF 410

Query: 300 DNPAILYEEPSAKVKQAIERVKHIHSL 326
           D+PAILYEEPS KVKQAI++VKH+HSL
Sbjct: 411 DDPAILYEEPSTKVKQAIQKVKHLHSL 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550502|ref|XP_002516301.1| Histone deacetylase, putative [Ricinus communis] gi|223544531|gb|EEF46048.1| Histone deacetylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388514335|gb|AFK45229.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224083458|ref|XP_002307035.1| histone deacetylase [Populus trichocarpa] gi|222856484|gb|EEE94031.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461867|ref|XP_004148663.1| PREDICTED: histone deacetylase 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449507477|ref|XP_004163043.1| PREDICTED: histone deacetylase 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519987|ref|XP_003630282.1| Histone deacetylase [Medicago truncatula] gi|355524304|gb|AET04758.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512844|ref|XP_003525125.1| PREDICTED: histone deacetylase 14-like [Glycine max] Back     alignment and taxonomy information
>gi|18418220|ref|NP_567921.1| histone deacetylase 14 [Arabidopsis thaliana] gi|75249520|sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gi|15529220|gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gi|21360523|gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gi|332660831|gb|AEE86231.1| histone deacetylase 14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798586|ref|XP_002867177.1| hypothetical protein ARALYDRAFT_913072 [Arabidopsis lyrata subsp. lyrata] gi|297313013|gb|EFH43436.1| hypothetical protein ARALYDRAFT_913072 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
TAIR|locus:2119201423 HDA14 "AT4G33470" [Arabidopsis 0.996 0.768 0.794 7e-141
UNIPROTKB|Q604Q2310 MCA2486 "Histone deacetylase/A 0.825 0.867 0.396 4.7e-48
TIGR_CMR|SPO_0250308 SPO_0250 "histone deacetylase 0.831 0.879 0.391 6e-48
FB|FBgn0026428 1138 HDAC6 "HDAC6" [Drosophila mela 0.907 0.260 0.376 1.9e-47
ASPGD|ASPL0000014944 766 hdaA [Emericella nidulans (tax 0.843 0.359 0.378 5.8e-45
UNIPROTKB|E2RSA8 668 HDAC10 "Uncharacterized protei 0.809 0.395 0.403 5.8e-44
UNIPROTKB|F1RXT2 677 LOC100518786 "Uncharacterized 0.880 0.423 0.381 7.2e-44
UNIPROTKB|I3LDD6 677 LOC100518786 "Uncharacterized 0.880 0.423 0.381 7.2e-44
TAIR|locus:2095087564 HDA15 "AT3G18520" [Arabidopsis 0.776 0.448 0.389 1.3e-43
MGI|MGI:2158340 666 Hdac10 "histone deacetylase 10 0.815 0.399 0.378 2.2e-43
TAIR|locus:2119201 HDA14 "AT4G33470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
 Identities = 259/326 (79%), Positives = 290/326 (88%)

Query:     2 ELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYA 61
             ELT +FRGS+I+EL NF  A+V+DIA+VH +AYV GLEKAMD AS  G+I IEGSGPTYA
Sbjct:    98 ELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGSGPTYA 157

Query:    62 TATTFQESLAAAGAGIALVDSV-AASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNV 120
             T+TTFQ+SL AAGAG+ALVDSV AAS+N  DPP+GFALIRPPGHHA+PKGPMGFCVFGNV
Sbjct:   158 TSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNV 217

Query:   121 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVG 180
             AIAAR+AQR HGLKR+FIIDFDVHHGNGTNDAF +DPDIFFLSTHQDGSYPGTGKI ++G
Sbjct:   218 AIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYPGTGKISDIG 277

Query:   181 RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQ 240
             +G GEG+TLNLPLPGGSGD AMRTVF E+IVPCAQRFKPD+ILVSAGYDAHVLDPLA+LQ
Sbjct:   278 KGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQ 337

Query:   241 FTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD 300
             FTT TYY LA +IK+LAK++CG RCVFFLEGGYNL SLS SVADSFRA LGE S ASEFD
Sbjct:   338 FTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGEDSLASEFD 397

Query:   301 NPAILYEEPSAKVKQAIERVKHIHSL 326
             NPA LY+EP  KV+ AI+R K IH L
Sbjct:   398 NPAYLYDEPMRKVRDAIQRAKSIHCL 423
GO:0004407 "histone deacetylase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0016575 "histone deacetylation" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0042903 "tubulin deacetylase activity" evidence=IDA
GO:0043014 "alpha-tubulin binding" evidence=IDA
GO:0043621 "protein self-association" evidence=IPI
GO:0048487 "beta-tubulin binding" evidence=IDA
GO:0051721 "protein phosphatase 2A binding" evidence=IDA
GO:0090042 "tubulin deacetylation" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019760 "glucosinolate metabolic process" evidence=RCA
UNIPROTKB|Q604Q2 MCA2486 "Histone deacetylase/AcuC/AphA family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0250 SPO_0250 "histone deacetylase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014944 hdaA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSA8 HDAC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXT2 LOC100518786 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDD6 LOC100518786 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2095087 HDA15 "AT3G18520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2158340 Hdac10 "histone deacetylase 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q57955Y535_METJANo assigned EC number0.33430.89260.8483yesno
Q941D6HDA14_ARATH3, ., 5, ., 1, ., 9, 80.79440.99690.7683yesno
O30107Y130_ARCFUNo assigned EC number0.37730.93860.8523yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.991
3rd Layer3.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-132
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-112
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-102
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 3e-99
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 5e-86
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 2e-77
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-76
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 2e-74
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 9e-68
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 3e-65
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 8e-61
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 4e-58
cd11683337 cd11683, HDAC10, Histone deacetylase 10 2e-55
cd10007420 cd10007, HDAC5, Histone deacetylase 5 8e-55
cd10006409 cd10006, HDAC4, Histone deacetylase 4 4e-52
cd10008378 cd10008, HDAC7, Histone deacetylase 7 1e-51
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 6e-47
cd10009379 cd10009, HDAC9, Histone deacetylase 9 2e-46
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 1e-29
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 7e-26
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 7e-25
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 8e-25
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-23
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 2e-21
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 1e-20
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 7e-19
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 2e-17
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 2e-17
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 5e-16
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-14
cd08415196 cd08415, PBP2_LysR_opines_like, The C-terminal sub 0.004
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information 
 Score =  377 bits (972), Expect = e-132
 Identities = 131/280 (46%), Positives = 174/280 (62%), Gaps = 10/280 (3%)

Query: 11  EIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESL 70
           + +      PA+ +++  VH   Y+  +E       + G   ++    TY +  +++ +L
Sbjct: 22  DRLVFVEPRPATEEELLRVHTPEYIERVE----ETCEAGGGYLDPD--TYVSPGSYEAAL 75

Query: 71  AAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRA 130
            AAGA +A VD+V + +        FAL+RPPGHHA P   MGFC+F NVAIAARYAQ+ 
Sbjct: 76  LAAGAALAAVDAVLSGEAEN----AFALVRPPGHHAEPDRAMGFCLFNNVAIAARYAQKR 131

Query: 131 HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLN 190
           +GLKRV I+D+DVHHGNGT D FYDDP + + S HQ   YPGTG  +E G G GEG T+N
Sbjct: 132 YGLKRVLIVDWDVHHGNGTQDIFYDDPSVLYFSIHQYPFYPGTGAAEETGGGAGEGFTIN 191

Query: 191 LPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLA 250
           +PLP GSGD      F EV++P A+ F+PDL+LVSAG+DAH  DPL  +  T   Y  L 
Sbjct: 192 VPLPPGSGDAEYLAAFEEVLLPIAREFQPDLVLVSAGFDAHRGDPLGGMNLTPEGYARLT 251

Query: 251 ANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFL 290
             +K+LA + CG R VF LEGGYNL +L+ SV     A L
Sbjct: 252 RLLKELADEHCGGRLVFVLEGGYNLEALAESVLAVLEALL 291

Class II histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. This group includes animal HDAC4,5,6,7,8,9,10, fungal HOS3 and HDA1, plant HDA5 and HDA15 as well as other eukaryotes, archaeal and bacterial histone-like deacetylases. Eukaryotic deacetylases mostly use histones (H2, H3, H4) as substrates for deacetylation; however, non-histone substrates are known (for example, tubulin). Substrates for prokaryotic histone-like deacetylases are not known. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Interaction partners of class II deacetylases include 14-3-3 proteins, MEF2 family of transcriptional factors, CtBP, calmodulin (CaM), SMRT, N-CoR, BCL6, HP1alpha and SUMO. Histone deacetylases play a role in the regulation of cell cycle, cell differentiation and survival. Class II mammalian HDACs are differentially inhibited by structurally diverse compounds with known antitumor activities, thus presenting them as potential drug targets for human diseases resulting from aberrant acetylation. Length = 291
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|176107 cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 326
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-77  Score=576.14  Aligned_cols=270  Identities=44%  Similarity=0.763  Sum_probs=251.5

Q ss_pred             ceeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCCCC
Q 020411           11 EIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRP   90 (326)
Q Consensus        11 ~~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~~~   90 (326)
                      ..+++.+|++++.++|++||+++||++|++.+..   .+...++  .+++++++||++|++++|++++|++.+..+.   
T Consensus        42 ~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~---~~~~~~d--~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~---  113 (340)
T COG0123          42 DSLELVEPRPATLEELLLVHSPDYVEFLESLSEE---EGYGNLD--GDTPVSPGTYEAARLAAGGALTAVDAVLEGE---  113 (340)
T ss_pred             ccccccCCCcCCHHHHHhhCCHHHHHHHHHhccc---ccccccc--CCCccChHHHHHHHHHhhHHHHHHHHHHcCc---
Confidence            3468899999999999999999999999887432   1123444  3788999999999999999999999996543   


Q ss_pred             CCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccC--C
Q 020411           91 DPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--G  168 (326)
Q Consensus        91 ~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~--~  168 (326)
                        .++||++|||||||++++++|||+|||+||||++++++ +++||+|||||+|||||||+|||+||+|+++|+|++  +
T Consensus       114 --~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~  190 (340)
T COG0123         114 --DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRP  190 (340)
T ss_pred             --cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCC
Confidence              47999999999999999999999999999999999987 899999999999999999999999999999999997  7


Q ss_pred             CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHH
Q 020411          169 SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYM  248 (326)
Q Consensus       169 ~yP~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~  248 (326)
                      +||+||..+|+|.++ +|+++|||||+|++|++|+.+|+.++.|++++|+||+||||||||+|.+||||.|+||.++|.+
T Consensus       191 ~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~  269 (340)
T COG0123         191 FYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAK  269 (340)
T ss_pred             CCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHH
Confidence            899999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCC
Q 020411          249 LAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP  293 (326)
Q Consensus       249 ~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~  293 (326)
                      +++.+++++..+ ++|+++||||||+.+.+++++..++..|.|..
T Consensus       270 ~~~~v~~~a~~~-~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~  313 (340)
T COG0123         270 IGRAVRKLAEGY-GGPVVAVLEGGYNLDALARSLVAFLAGLAGLV  313 (340)
T ss_pred             HHHHHHHHHHhc-CCCeEEEecCCCChHHHHHHHHHHHHHHcCCC
Confidence            999999999988 89999999999999999999999999999964

>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 4e-44
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 4e-44
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 6e-43
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 7e-43
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 3e-42
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 3e-42
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 3e-39
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 1e-24
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 1e-23
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 2e-22
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 3e-21
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 3e-21
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 1e-17
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 1e-17
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 1e-17
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-17
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 2e-17
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 2e-17
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 2e-17
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 2e-17
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 2e-17
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 2e-17
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-17
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-17
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 2e-16
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 2e-15
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 25  DIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVA 84
           DI   H+ A++    + M R S        G G T       + +  +AG  + L   VA
Sbjct: 71  DILRAHSAAHL----ENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVA 126
Query: 85  ASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVH 144
             +       G+AL+ PPGHHA     MGFC+F N ++AA YA+   G++RV I+D+DVH
Sbjct: 127 TGELSA----GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVH 182
Query: 145 HGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMR 203
           HGNGT D +++DP +  +S HQ   + P +G   E G G+G G  +N+PLP GSG+ A  
Sbjct: 183 HGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYL 242
Query: 204 TVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGS 263
               +V++P  + ++P LI+V +G+DA +LDPLA +  T   +  +A      A D+C  
Sbjct: 243 HAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDG 302
Query: 264 RCVFFLEGGYNLNSLSY---SVADSFRAFLGEPSKASEF 299
           R VF  EGGY+ + L +   +V +        P    EF
Sbjct: 303 RIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEF 341
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 1e-130
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 1e-118
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 1e-105
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-102
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 6e-85
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-78
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 4e-78
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-77
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
 Score =  375 bits (964), Expect = e-130
 Identities = 97/314 (30%), Positives = 155/314 (49%), Gaps = 11/314 (3%)

Query: 13  IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAA 72
           +       A+  DI   H+ A++  +++  +  +          G T       + +  +
Sbjct: 59  LTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTG----DGITMMGNGGLEIARLS 114

Query: 73  AGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHG 132
           AG  + L   VA  +       G+AL+ PPGHHA     MGFC+F N ++AA YA+   G
Sbjct: 115 AGGAVELTRRVATGELSA----GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLG 170

Query: 133 LKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNL 191
           ++RV I+D+DVHHGNGT D +++DP +  +S HQ   + P +G   E G G+G G  +N+
Sbjct: 171 MERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINV 230

Query: 192 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 251
           PLP GSG+ A      +V++P  + ++P LI+V +G+DA +LDPLA +  T   +  +A 
Sbjct: 231 PLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMAR 290

Query: 252 NIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDN--PAILYEEP 309
                A D+C  R VF  EGGY+ + L +          G  S    +      +     
Sbjct: 291 RTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTL 350

Query: 310 SAKVKQAIERVKHI 323
               + AIE +  +
Sbjct: 351 LDAERAAIEEIVPL 364
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 83.82
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-84  Score=628.75  Aligned_cols=305  Identities=32%  Similarity=0.566  Sum_probs=274.1

Q ss_pred             eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHhchhHhhHHHHHcCCCCCCC
Q 020411           13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVAASKNRPDP   92 (326)
Q Consensus        13 ~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~aag~~l~a~~~v~~~~~~~~~   92 (326)
                      +++.+|++||.++|++|||++||++|++....   ++...++ .+++++++++|+++++++|+++.|+++++.++    .
T Consensus        59 ~~~~~p~~a~~~~l~~vH~~~Yv~~l~~~~~~---~~~~~l~-~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~----~  130 (369)
T 1zz1_A           59 LTPIAAVAATDADILRAHSAAHLENMKRVSNL---PTGGDTG-DGITMMGNGGLEIARLSAGGAVELTRRVATGE----L  130 (369)
T ss_dssp             SEECCCCCCCHHHHHTTSCHHHHHHHHHHHHS---TTCEECS-SSSCEECTTTHHHHHHHHHHHHHHHHHHHTTS----C
T ss_pred             ceEeCCCcCCHHHHHHhccHHHHHHHHHhCcc---ccceecC-CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCC----C
Confidence            57889999999999999999999999876320   2223332 34789999999999999999999999997654    3


Q ss_pred             CceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccccccCCCeEEEecccCCCCC-
Q 020411           93 PLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP-  171 (326)
Q Consensus        93 ~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~f~~d~~Vl~~SiH~~~~yP-  171 (326)
                      .++||++|||||||++++++|||+|||+||||+++++++|++||+|||||||||||||+|||+||+|+|+|+|++++|| 
T Consensus       131 ~~afa~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~  210 (369)
T 1zz1_A          131 SAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPP  210 (369)
T ss_dssp             SEEEECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSST
T ss_pred             cceEEEecCCccCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCC
Confidence            5899999999999999999999999999999999999889999999999999999999999999999999999999999 


Q ss_pred             CCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCcccCHHHHHHHHH
Q 020411          172 GTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA  251 (326)
Q Consensus       172 ~tg~~~e~G~~~g~g~~~Nipl~~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~aG~D~~~~Dplg~l~ls~~~~~~~~~  251 (326)
                      +||..+|+|.+.|+|+++|||||+|++|++|+.+|+++++|++++|+||+||||||||+|.+||||+|+||+++|.++++
T Consensus       211 ~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~  290 (369)
T 1zz1_A          211 DSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMAR  290 (369)
T ss_dssp             TCCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHH
T ss_pred             CCCcccccCCCCCCceEEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCC--ccccCCccHHHHHHHHHHHHHhC
Q 020411          252 NIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNP--AILYEEPSAKVKQAIERVKHIHS  325 (326)
Q Consensus       252 ~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~  325 (326)
                      .|++++.++|+||++++|||||++++++++|..++++|+|.+...+++.+.  .....+..+.++++|+++|+.|+
T Consensus       291 ~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  366 (369)
T 1zz1_A          291 RTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLA  366 (369)
T ss_dssp             HHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGG
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhccccchHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999975421221110  11134567889999999988763
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 326
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 3e-52
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-48
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-44
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (442), Expect = 3e-52
 Identities = 103/337 (30%), Positives = 156/337 (46%), Gaps = 32/337 (9%)

Query: 13  IELKNFSPASVDDIASVHARAYVSGLEKA------------MDRASQQGIILIEGSGPTY 60
            E      AS++++ SVH+  +V                      +Q+  +++   G   
Sbjct: 50  CECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGV 109

Query: 61  ATATTFQESL---AAAGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVF 117
            T T + E     AA  A  ++ D      +R     GFA++RPPGHHA     MGFC F
Sbjct: 110 DTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKN-GFAVVRPPGHHADHSTAMGFCFF 168

Query: 118 GNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGS---YPGTG 174
            +VAIA R  Q+     ++ I+D+DVHHGNGT   FY DP + ++S H+      +PG+G
Sbjct: 169 NSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSG 228

Query: 175 KIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA 230
            +DEVG G GEG  +N+   G      GD      F  V++P A+ F PDL+LVSAG+DA
Sbjct: 229 AVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDA 288

Query: 231 HVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRA 288
                 PL     +   +  +     Q   +L G   V  LEGG++L ++  +      A
Sbjct: 289 AEGHPAPLGGYHVSAKCFGYMT----QQLMNLAGGAVVLALEGGHDLTAICDASEACVAA 344

Query: 289 FLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHS 325
            LG               ++P+    +++E V  +HS
Sbjct: 345 LLGNR--VDPLSEEGW-KQKPNLNAIRSLEAVIRVHS 378
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-77  Score=584.50  Aligned_cols=304  Identities=33%  Similarity=0.526  Sum_probs=261.9

Q ss_pred             ceeeeeCCCCCCHHHHHhhccHHHHHHHHHHhH-----------HHHhcCc------ccccCCCCcccCh-hHHHHHHHH
Q 020411           11 EIIELKNFSPASVDDIASVHARAYVSGLEKAMD-----------RASQQGI------ILIEGSGPTYATA-TTFQESLAA   72 (326)
Q Consensus        11 ~~~~~~~~~~at~~~L~~vHs~~Yv~~l~~~~~-----------~~~~~~~------~~~~~~~~~~~~~-~t~~~a~~a   72 (326)
                      +.+++.+|++|+.++|++|||++||++++....           ....+..      .....+.++++++ .++++|+++
T Consensus        48 ~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~a  127 (386)
T d3c10a1          48 SQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWA  127 (386)
T ss_dssp             GGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHH
T ss_pred             cCCeEeCCCCCCHHHHHHhCCHHHHHHHhhchhhhhcccccccchhhhhhhhcccCCCCcccCCCcccCcchHHHHHHHH
Confidence            447888999999999999999999998863210           0000100      0011123555555 899999999


Q ss_pred             hchhHhhHHHHHcCCCCCCCCceeeecCCCCCCCCCCCCCccccccHHHHHHHHHHHhcCCCeEEEEEccccCCCccccc
Q 020411           73 AGAGIALVDSVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDA  152 (326)
Q Consensus        73 ag~~l~a~~~v~~~~~~~~~~~~fal~rPpGHHA~~~~~~GFC~~NnvAiAa~~~~~~~~~~RV~ivD~DvHhGnGtq~~  152 (326)
                      +|++++|++.++.++    ..++||++|||||||.+++++|||+|||+||||++++++++++||+|||||||||||||++
T Consensus       128 aG~~~~a~~~v~~~~----~~~afa~~rppGHHA~~~~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~i  203 (386)
T d3c10a1         128 AGSVTDLAFKVASRE----LKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQT  203 (386)
T ss_dssp             HHHHHHHHHHHHTTS----SSEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHH
T ss_pred             hhHHHHHHhhhhcCc----ccccccccccccccccccccCCcccccHHHHHHHHHHhhcccCCceEEecccCCCCceeeE
Confidence            999999999996554    3589999999999999999999999999999999999998899999999999999999999


Q ss_pred             cccCCCeEEEecccC---CCCCCCCCCCccCCCCCCCceeeccCC----CCCCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020411          153 FYDDPDIFFLSTHQD---GSYPGTGKIDEVGRGDGEGSTLNLPLP----GGSGDTAMRTVFHEVIVPCAQRFKPDLILVS  225 (326)
Q Consensus       153 f~~d~~Vl~~SiH~~---~~yP~tg~~~e~G~~~g~g~~~Nipl~----~g~~d~~y~~~~~~~l~p~~~~f~Pd~ivv~  225 (326)
                      |++||+|+|+|+|++   ++||+||..+|+|.+.+.|+++|+|||    ++++|++|+.+|+++|.|++++|+||+||||
T Consensus       204 f~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvs  283 (386)
T d3c10a1         204 FYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVS  283 (386)
T ss_dssp             HTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEE
T ss_pred             eeccccccccccccccccccCCCCCCHHhcCCCCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999999999996   478999999999999999999999987    5688999999999999999999999999999


Q ss_pred             ecCCCCCCC--CCCCcccCHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCc
Q 020411          226 AGYDAHVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPA  303 (326)
Q Consensus       226 aG~D~~~~D--plg~l~ls~~~~~~~~~~l~~la~~~~~g~~~~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~  303 (326)
                      ||||+|++|  |||+|+||+++|.+++++|++++    ++|++++||||||++++++++..++++|+|.+.+  +. .+.
T Consensus       284 aG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~----~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~--~~-~~~  356 (386)
T d3c10a1         284 AGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNRVD--PL-SEE  356 (386)
T ss_dssp             ECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSG----GGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCC--GG-GCS
T ss_pred             CCccccccCcchhhcCccCHHHHHHHHHHHHHHc----CCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCC--CC-Ccc
Confidence            999999999  89999999999999999887654    6899999999999999999999999999997532  11 122


Q ss_pred             cccCCccHHHHHHHHHHHHHhC
Q 020411          304 ILYEEPSAKVKQAIERVKHIHS  325 (326)
Q Consensus       304 ~~~~~~~~~~~~~i~~~~~~~~  325 (326)
                      ...+.|+.+..+.|+++++.|+
T Consensus       357 ~~~~~~~~~~~~~l~~~~~~~~  378 (386)
T d3c10a1         357 GWKQKPNLNAIRSLEAVIRVHS  378 (386)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCCCHHHHHHHHHHHHHHH
Confidence            3346788888999999999886
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure