Citrus Sinensis ID: 020659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG
ccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEEEccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccEEEEEEEEcccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccEEEEEccccEEEEEEccccEEEEEcccccccccc
cccccccccccccccccEEEEEEEccccEEEEEEEcccEEEEEEccccccccccccccccccEEHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEEcccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccHHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccccHHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccc
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALwgngdygrlglgslesrwrpvvcSAFEKHSLKALACGGAHTLFLTETgcvyatglndfgqlgisenigysleplrisglkKEVVQISTGyhhssaitvdgelymwgknsngqlglgkkaakvipiptkveclSGIFTKQAALGFEQSvavtgggkvlswgaggsgrlghgqessilgflrstseyTPRLIKELEGVKVKIAAAGFLHsacidengrvyifgDRAVDKMLFqegnharrpslisklpyseevvcggyhtcvltsggelytwgsnengclgig
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLtsggelytwgsnengclgig
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG
******TAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCL***
MLGRS**AMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG
*****LTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNEN******
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MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q9FN03 440 Ultraviolet-B receptor UV no no 0.832 0.611 0.336 3e-33
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.826 0.054 0.361 2e-32
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.823 0.251 0.322 2e-31
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.823 0.251 0.315 6e-31
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.823 0.251 0.312 7e-30
Q92834 1020 X-linked retinitis pigmen no no 0.820 0.259 0.320 1e-28
F2Z461 1003 E3 ISG15--protein ligase no no 0.792 0.255 0.325 2e-27
Q9R0X5 1001 X-linked retinitis pigmen no no 0.913 0.294 0.291 3e-27
Q15034 1050 Probable E3 ubiquitin-pro no no 0.767 0.236 0.328 2e-26
Q9N1T2 1003 X-linked retinitis pigmen no no 0.820 0.264 0.303 2e-26
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 39  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 98

Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 99  RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 157

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 158 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 210 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 266

Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G
Sbjct: 267 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 311
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris GN=RPGR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
225438323420 PREDICTED: E3 ubiquitin-protein ligase H 0.978 0.752 0.678 1e-125
356508920417 PREDICTED: probable E3 ubiquitin-protein 0.848 0.657 0.69 1e-118
224083557419 predicted protein [Populus trichocarpa] 0.956 0.737 0.707 1e-115
255549098374 Williams-Beuren syndrome chromosome regi 0.916 0.791 0.671 1e-113
449508251386 PREDICTED: probable E3 ubiquitin-protein 0.910 0.761 0.664 1e-112
356518818404 PREDICTED: LOW QUALITY PROTEIN: probable 0.885 0.707 0.675 1e-112
449453906 481 PREDICTED: probable E3 ubiquitin-protein 0.910 0.611 0.664 1e-112
30682540 434 regulator of chromosome condensation rep 0.891 0.663 0.662 1e-108
297810989 434 hypothetical protein ARALYDRAFT_487713 [ 0.869 0.647 0.660 1e-107
212721370418 uncharacterized protein LOC100194342 [Ze 0.907 0.700 0.598 1e-101
>gi|225438323|ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|296082630|emb|CBI21635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/320 (67%), Positives = 262/320 (81%), Gaps = 4/320 (1%)

Query: 4   RSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV 63
           RS   +++  L+   KLG  LG C+R  SS  ++RFAALWGNGD+GRLGLGSLES+WRP 
Sbjct: 3   RSCMRVSQSALQS--KLG--LGFCRRLSSSEPRKRFAALWGNGDFGRLGLGSLESQWRPA 58

Query: 64  VCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK 123
           VCSAF+ HSL A+ACGGAHTLFLTE+GCVYA GLNDFGQLG+S +  Y+ EPL +S L K
Sbjct: 59  VCSAFDHHSLVAIACGGAHTLFLTESGCVYAAGLNDFGQLGVSVDKNYTTEPLEVSALPK 118

Query: 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183
           +++ I+ GY+HS+AIT DGELYMWGKNSNGQLGLGKKAA  + +P+KVECL+GI  K  A
Sbjct: 119 KIIHIAAGYYHSAAITADGELYMWGKNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVA 178

Query: 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA 243
           LG E SVA T  G+ LSWGAGGSGRLGHG ESS+LGF R++SEY PRLI+ LEG+KVK  
Sbjct: 179 LGSEHSVAATDQGEALSWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLEGIKVKNV 238

Query: 244 AAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVL 303
           AAG LHSACIDENG V+IFG+RA+DK  F+E  +A  PS+IS+LPYS++V CGGYHTCV+
Sbjct: 239 AAGLLHSACIDENGSVFIFGERAMDKFGFREAKNATAPSMISELPYSKQVACGGYHTCVI 298

Query: 304 TSGGELYTWGSNENGCLGIG 323
           +S GEL+TWGSNENGCLG+G
Sbjct: 299 SSSGELFTWGSNENGCLGMG 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508920|ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|224083557|ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|222856514|gb|EEE94061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549098|ref|XP_002515604.1| Williams-Beuren syndrome chromosome region 16 protein, putative [Ricinus communis] gi|223545242|gb|EEF46749.1| Williams-Beuren syndrome chromosome region 16 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449508251|ref|XP_004163263.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518818|ref|XP_003528074.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4-like [Glycine max] Back     alignment and taxonomy information
>gi|449453906|ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30682540|ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|26452773|dbj|BAC43467.1| unknown protein [Arabidopsis thaliana] gi|28973187|gb|AAO63918.1| putative UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|332003957|gb|AED91340.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297810989|ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|212721370|ref|NP_001132850.1| uncharacterized protein LOC100194342 [Zea mays] gi|194695574|gb|ACF81871.1| unknown [Zea mays] gi|413924971|gb|AFW64903.1| putative regulator of chromosome condensation (RCC1) family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
TAIR|locus:504956339434 RUG1 "AT5G08710" [Arabidopsis 0.950 0.707 0.663 5.8e-114
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.832 0.611 0.340 3.9e-37
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.879 0.058 0.348 3.1e-35
TAIR|locus:2159295445 RUG3 "RCC1/UVR8/GEF-like 3" [A 0.835 0.606 0.325 6.3e-35
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.882 0.058 0.351 1e-34
UNIPROTKB|J9NWD8 4118 HERC1 "Uncharacterized protein 0.882 0.069 0.348 1.8e-34
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.882 0.058 0.348 2.2e-34
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.882 0.058 0.348 2.2e-34
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.882 0.058 0.348 2.2e-34
RGD|1310971 1057 Herc4 "HECT and RLD domain con 0.823 0.251 0.329 2.8e-33
TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 205/309 (66%), Positives = 253/309 (81%)

Query:    14 LKQDIKLGSKLGIC-KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS 72
             L +D KLG  +G+C  RW+SS   +RFAA+WG+GDYGRLGLG+L+S+W P VCSA   HS
Sbjct:    25 LLKDSKLGP-IGVCCSRWVSSESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHS 83

Query:    73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY 132
             + A+ACGGAHTLFLTET  V+ATGLND GQLG+S+   ++++PL +SGL K+++ IS GY
Sbjct:    84 ITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGY 143

Query:   133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192
             +HS+AITVDGELYMWGKNS+GQLGLGKKAA+V+ +PTKVE L GI  +  ALG E SVAV
Sbjct:   144 YHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAV 203

Query:   193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252
             T GG+VLSWG GGSGRLGHG +SS+ G LRS SE+TPRLIKELEG+KV   AAG LHSAC
Sbjct:   204 TDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSAC 263

Query:   253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312
              DENG  ++FG+++++KM F    +A  PS+IS++PY+EEV CGGYHTCV+T GGELYTW
Sbjct:   264 TDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAEEVACGGYHTCVVTRGGELYTW 323

Query:   313 GSNENGCLG 321
             GSNENGCLG
Sbjct:   324 GSNENGCLG 332
GO:0003682 "chromatin binding" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWD8 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-29
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-27
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-23
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-22
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-06
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  116 bits (293), Expect = 2e-29
 Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 19/275 (6%)

Query: 60  WRP--VVCSAFEKHSLK--ALACGGAHTLFLTETGCVYATG---LNDFGQLGISENIGYS 112
             P  V   +  K  L+   LACG   ++ LT  G VY+ G     + GQ     +   S
Sbjct: 161 STPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS 220

Query: 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLG--KKAAKVIPIPTK 170
           ++   +   KK +VQ++ G  H  A+T +G++Y WG N  GQLG    ++   V+ +   
Sbjct: 221 IQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP 280

Query: 171 VECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230
               +    K  A G + S+A+   G++ +WG    G+LG G +  I           P 
Sbjct: 281 FAIRN---IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN 332

Query: 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR--PSLISKLP 288
             + L GV +   +AG  HS  + ++G +Y FG     ++  QE        P+ +S   
Sbjct: 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI 392

Query: 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
             E+V CG +H    T  G +Y+WG  E+G LG G
Sbjct: 393 KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184 476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.33
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.2
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.01
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.9
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.68
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 95.42
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 92.96
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.79
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 92.55
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 92.25
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 92.08
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.01
KOG0293519 consensus WD40 repeat-containing protein [Function 88.54
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 87.33
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 86.25
KOG0646 476 consensus WD40 repeat protein [General function pr 86.11
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.9
KOG0315311 consensus G-protein beta subunit-like protein (con 85.74
KOG0315311 consensus G-protein beta subunit-like protein (con 85.26
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 84.49
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 83.89
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 83.61
TIGR01063800 gyrA DNA gyrase, A subunit. This model describes t 82.62
PRK13979 957 DNA topoisomerase IV subunit A; Provisional 81.29
PHA02713557 hypothetical protein; Provisional 80.09
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-46  Score=331.91  Aligned_cols=298  Identities=29%  Similarity=0.449  Sum_probs=247.6

Q ss_pred             hhhhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCC----------------CCCeeceeEecc----CCCCceEE
Q 020659           16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGS----------------LESRWRPVVCSA----FEKHSLKA   75 (323)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~----------------~~~~~~p~~v~~----~~~~~i~~   75 (323)
                      .-..+.++||..|+..+.  .|+.||+||.|..|+||...                .+....|..++.    ....+|++
T Consensus       103 ~~~i~~~acGg~hsl~ld--~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~  180 (476)
T COG5184         103 KASIIKIACGGNHSLGLD--HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVK  180 (476)
T ss_pred             ceeeEEeecCCceEEeec--CCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEE
Confidence            355677889999999988  99999999999999999875                122567888876    23458999


Q ss_pred             EEeCccceEEEEcCCcEEEEeCCCCccccCCCCCC-----ceecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCC
Q 020659           76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIG-----YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN  150 (323)
Q Consensus        76 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~-----~~~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n  150 (323)
                      ++||++++++|+++|+||+||....+.++.+....     ....|..+.  +..|+++++|.+|.++|+++|++|+||+|
T Consensus       181 l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~  258 (476)
T COG5184         181 LACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSN  258 (476)
T ss_pred             eecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCC
Confidence            99999999999999999999999988888773222     223444444  56899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccccceEecccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccce
Q 020659          151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR  230 (323)
Q Consensus       151 ~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~  230 (323)
                      ..||||....+......+.- ..+.-..|+.|+||.+|+++|+++|++|+||.|.+||+|.......     ......|+
T Consensus       259 qkgqlG~~~~e~~~~~~lv~-~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~-----~a~~tk~~  332 (476)
T COG5184         259 QKGQLGRPTSERLKLVVLVG-DPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN  332 (476)
T ss_pred             cccccCCchhhhcccccccC-ChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccccc-----ceeecccc
Confidence            99999998877633222211 1111123789999999999999999999999999999999832111     23445566


Q ss_pred             eecccCCCcEEEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCC--CCCcCCCeeecCCCCeeEEEecCCeeEEEEcCCC
Q 020659          231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE--GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGE  308 (323)
Q Consensus       231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~--~~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~  308 (323)
                      ....+....|..++++..|+++|..+|.||+||.+..+|||..+  +..+..|.++.....+..|+||..|.++.+++|+
T Consensus       333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gs  412 (476)
T COG5184         333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGS  412 (476)
T ss_pred             ccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCc
Confidence            66666666799999999999999999999999999999999998  7888889989888899999999999999999999


Q ss_pred             EEEeeCCCCCccCCC
Q 020659          309 LYTWGSNENGCLGIG  323 (323)
Q Consensus       309 v~~~G~n~~gqLG~G  323 (323)
                      ||+||++++||||.|
T Consensus       413 vy~wG~ge~gnlG~g  427 (476)
T COG5184         413 VYSWGWGEHGNLGNG  427 (476)
T ss_pred             eEEecCchhhhccCC
Confidence            999999999999986

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>PRK13979 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-34
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 7e-18
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-34
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-17
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-34
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-17
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 8e-34
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-18
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-26
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 4e-10
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 2e-18
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 3e-18
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-16
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-08
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 4e-15
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 5e-11
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)
Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 210
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 211 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-82
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-79
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-72
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-67
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-27
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-80
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-65
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-64
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-56
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-49
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-75
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-71
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-62
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-53
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-46
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-14
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-70
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-65
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 8e-62
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-52
3of7_A 473 Regulator of chromosome condensation; beta-propell 6e-68
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-60
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-55
3of7_A473 Regulator of chromosome condensation; beta-propell 5e-52
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-43
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-37
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-36
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-25
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-23
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  253 bits (649), Expect = 3e-82
 Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99

Query: 102 QLGISENIGYSLEPLRISGLK-KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   +      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
                 +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD------- 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 210 --RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267

Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.46
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.14
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.09
1p22_A 435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.72
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.67
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.22
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 95.6
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 95.34
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 95.32
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 95.16
3mmy_A 368 MRNA export factor; mRNA export, nuclear protein; 94.91
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 94.71
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 94.66
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.66
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.38
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 94.02
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 92.97
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 92.03
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 91.41
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 91.15
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 90.29
3jrp_A379 Fusion protein of protein transport protein SEC13 90.19
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 90.15
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 90.12
3jro_A 753 Fusion protein of protein transport protein SEC13 89.94
2xyi_A430 Probable histone-binding protein CAF1; transcripti 89.8
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 89.68
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 89.65
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 89.4
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 87.85
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 87.72
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 87.35
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 87.01
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 86.82
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 86.8
1yfq_A 342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 86.61
4g56_B357 MGC81050 protein; protein arginine methyltransfera 86.36
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 85.78
1xip_A 388 Nucleoporin NUP159; beta-propeller, transport prot 85.18
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 85.16
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 84.5
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 84.46
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 83.2
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 82.67
3jrp_A 379 Fusion protein of protein transport protein SEC13 82.59
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 82.41
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 82.22
3i2n_A 357 WD repeat-containing protein 92; WD40 repeats, str 80.25
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 80.19
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=2.8e-63  Score=457.94  Aligned_cols=294  Identities=28%  Similarity=0.507  Sum_probs=269.7

Q ss_pred             hhhhcccccceeeeEEecccCcc-eEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEE
Q 020659           16 QDIKLGSKLGICKRWISSTLQRR-FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA   94 (323)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~   94 (323)
                      ...+..++||..|+++++  .++ +||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+
T Consensus        67 ~~~i~~va~G~~ht~al~--~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~  144 (406)
T 4d9s_A           67 GHQIVSVTCGADHTVAYS--QSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS  144 (406)
T ss_dssp             TSCEEEEEECSSEEEEEE--TTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred             CCCEEEEEeCcceEEEEE--CCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEE
Confidence            346778899999999887  664 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCccccCCCCCCceecceEecCCCC-ceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcccccceEecc
Q 020659           95 TGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC  173 (323)
Q Consensus        95 ~G~n~~gqlg~~~~~~~~~~p~~~~~~~~-~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~~~~  173 (323)
                      ||.|.+||||.+. ......|+++..+.. +|++|+||.+|+++|+++|+||+||.|.++|||.+....  ...|.++..
T Consensus       145 wG~n~~GqLG~g~-~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~--~~~p~~v~~  221 (406)
T 4d9s_A          145 WGRNQNGQLGLGD-TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD--RLVPERVTS  221 (406)
T ss_dssp             EECCTTSTTCSSS-CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCC--EEEEEECCC
T ss_pred             eCCCCCccCCCCC-CCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCC--cCccEEecc
Confidence            9999999999985 445677888887665 899999999999999999999999999999999987766  567888888


Q ss_pred             cCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccCCCcEEEEecCCCeeEEE
Q 020659          174 LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI  253 (323)
Q Consensus       174 ~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l  253 (323)
                      +...+|++|+||.+|+++|+++|+||+||.|.+||||.+.         ......|.++..+...+|++|+||.+|+++|
T Consensus       222 ~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~---------~~~~~~p~~v~~~~~~~v~~i~~G~~hs~al  292 (406)
T 4d9s_A          222 TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD---------LEDHLIPHKLEALSNSFISQISGGWRHTMAL  292 (406)
T ss_dssp             STTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS---------CCCEEEEEECGGGTTSCEEEEEECSSEEEEE
T ss_pred             cCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCC---------CcCccccEEecccCCCCEEEEEecCCEEEEE
Confidence            7778899999999999999999999999999999999987         4556789999888888999999999999999


Q ss_pred             ecCCcEEEEeCCCCCcCCcCCCCCcCCCeeecCC--CCeeEEEecCCeeEEEEcCCCEEEeeCCCCCccCCC
Q 020659          254 DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL--PYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG  323 (323)
Q Consensus       254 t~~g~ly~wG~n~~gqlg~~~~~~~~~p~~v~~~--~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gqLG~G  323 (323)
                      +++|+||+||.|.++|||.++..+...|++++.+  .+|++|+||.+|+++|+++|+||+||.|.+||||+|
T Consensus       293 t~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g  364 (406)
T 4d9s_A          293 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG  364 (406)
T ss_dssp             ETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCC
Confidence            9999999999999999999998888888888754  479999999999999999999999999999999987
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-22
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-19
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-12
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-12
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 7e-24
 Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 9/250 (3%)

Query: 81  AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
           +H    TE G V   G  D GQLG+ EN+    +P  +S  +  VVQ   G  H+  ++ 
Sbjct: 6   SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-VVQAEAGGMHTVCLSK 64

Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200
            G++Y +G N  G LG          +P KVE    +    A      ++   G   +  
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRL-IKELEGVKVKIAAAGFLHSACIDENGRV 259
                +G +G  +               P + +       V + A G L++    E G++
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184

Query: 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPYS-------EEVVCGGYHTCVLTSGGELYTW 312
               +   ++   Q       P  +             ++  CG Y T  ++  G +Y +
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244

Query: 313 GSNENGCLGI 322
           G +    LG 
Sbjct: 245 GLSNYHQLGT 254
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.23
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.86
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.97
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 94.42
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 93.69
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 93.22
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 90.32
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.34
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 87.58
d1suua_304 DNA gyrase A C-terminal domain {Lyme disease spiro 84.59
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 84.55
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 83.39
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-50  Score=369.04  Aligned_cols=295  Identities=24%  Similarity=0.313  Sum_probs=242.8

Q ss_pred             hhcccccceeeeEEecccCcceEEEeeCCCCCCCCCCCCCCeeceeEeccCCCCceEEEEeCccceEEEEcCCcEEEEeC
Q 020659           18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL   97 (323)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~   97 (323)
                      .+..++||..|+++++  .+++||+||.|.+||||.+.......|.+.......+|++|+||..|+++++++|+||+||.
T Consensus        48 ~i~~ia~G~~h~~al~--~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~  125 (401)
T d1a12a_          48 DVVQAEAGGMHTVCLS--KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS  125 (401)
T ss_dssp             CEEEEEECSSEEEEEE--TTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CeEEEEeCCCEEEEEe--CCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceeeccccccceeccc
Confidence            4678899999999998  89999999999999999998888777777777778899999999999999999999999998


Q ss_pred             CCCccccCCCCCCce-ecceEecCCCCceEEEEcCCCeEEEEEcCCcEEEEeCCCCCCCCCCCCCCcc---------ccc
Q 020659           98 NDFGQLGISENIGYS-LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKV---------IPI  167 (323)
Q Consensus        98 n~~gqlg~~~~~~~~-~~p~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~---------~~~  167 (323)
                      +...+.+........ ..+........+|++|++|..|+++++++|++|+||.|.++|||........         ...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~  205 (401)
T d1a12a_         126 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV  205 (401)
T ss_dssp             EEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHS
T ss_pred             cccccccccccCCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccc
Confidence            765554433222222 2222333345589999999999999999999999999999999976442211         123


Q ss_pred             ceEec-----ccCCceEEEEecCCCeEEEEECCCCEEEEeCCCCCCcCCCCCCCccccccccccccceeecccC--CCcE
Q 020659          168 PTKVE-----CLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE--GVKV  240 (323)
Q Consensus       168 p~~~~-----~~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~--~~~i  240 (323)
                      |..+.     .....+|.+|+||..|+++|+++|+||.||.|.++++|.....         ....|..+..+.  ...+
T Consensus       206 p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~---------~~~~~~~~~~~~~~~~~~  276 (401)
T d1a12a_         206 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE---------SCFIPQNLTSFKNSTKSW  276 (401)
T ss_dssp             CEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS---------CEEEEEECGGGCCTTCCE
T ss_pred             cceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccc---------cceeccccccccccceeE
Confidence            33332     2234579999999999999999999999999999999987743         333444443322  3469


Q ss_pred             EEEecCCCeeEEEecCCcEEEEeCCCCCcCCcCCC-CCcCCCeeecCCCCeeEEEecCCeeEEEEcCCCEEEeeCCCCCc
Q 020659          241 KIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG-NHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGC  319 (323)
Q Consensus       241 ~~i~~g~~~~~~lt~~g~ly~wG~n~~gqlg~~~~-~~~~~p~~v~~~~~i~~v~~G~~~~~~l~~~g~v~~~G~n~~gq  319 (323)
                      +.+++|..|+++++++|+||+||.|.++|||.++. .....|++++.+++|++|+||.+|++||+++|+||+||.|.+||
T Consensus       277 ~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQ  356 (401)
T d1a12a_         277 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQ  356 (401)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred             EEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCC
Confidence            99999999999999999999999999999999764 55677999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 020659          320 LGIG  323 (323)
Q Consensus       320 LG~G  323 (323)
                      ||+|
T Consensus       357 LG~G  360 (401)
T d1a12a_         357 LGTG  360 (401)
T ss_dssp             TCSS
T ss_pred             CCCC
Confidence            9987
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure