Citrus Sinensis ID: 020672

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
cccccHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEcccccccccHHHHHHHHccccccccccccEEEcccccEEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccccccccccEEEccccEEccHHHHHHHHHHHHHHcccccHHHHHcccc
ccccccHHHHHHHHEEHccccccccccccHHHHHccHHHHHHHccccccccccccEEEcccccEEEEEEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHcHHHHHHHHHccccccccEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHcccEEccccccHHHEEEEEEEEEEHHHccHHHHHHHHHHHcccEEEEccccccccccccccccEEEEEcHHHHHHHHHHHHHccccccccEEEEEEcccEEEccHHHHHHHHHHHHHHHccccHHHHHHccc
MGSHSSTRAVGAILHRIsngvsskwspnsfalskhgllsrnlfssassisswiplyevkhcnfqvrtirtfapvcmgrrsskiagrkgaQDAKKAKLYSRMGKEVISAVkkggpnptsNTVLAAVLEKAkeldvpkdIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKdcggkmadpgsvmfKFRRARVVnikftdadkDQLLDIALDagaedvieppvneddtdedrAERYYKVVSTSDNYTDITTKLReagipfetdngsellpittiEVDDEAMELNKELIAKLLelddvdavytdqi
mgshsstraVGAILHRIsngvsskwsPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIrtfapvcmgrrsskiagrkgaqdakkaklYSRMGKEVIsavkkggpnptsNTVLAAVLekakeldvpkdiVERNIkrasekgqeaFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVkdcggkmadpgsvmfkfRRARVVNIKFTDADKDQLLDIALdagaedvieppvneddtdedrAERYYkvvstsdnytdiTTKLReagipfetdngsellpITTIEVDDEAMELNKELIakllelddvdaVYTDQI
MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGllsrnlfssassissWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
**********GAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMG*******************************************VLAAVLEK***L*V**DIV***********QEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG*********************YYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY****
**********GAILHRISNGVSSKW***********LLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ*
*********VGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRS*****************YSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
********AVGAILH*ISNGVSSKWSPNSF***********LFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVN*******RAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKHCNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
O82314331 Probable transcriptional yes no 0.978 0.954 0.702 1e-122
Q9PJT5238 Probable transcriptional yes no 0.687 0.932 0.358 2e-34
Q9Z7Y0238 Probable transcriptional yes no 0.693 0.941 0.360 5e-34
B0B830238 Probable transcriptional yes no 0.687 0.932 0.354 1e-33
B0BC95238 Probable transcriptional yes no 0.687 0.932 0.354 1e-33
Q3KLP1238 Probable transcriptional yes no 0.687 0.932 0.354 1e-33
Q253C8238 Probable transcriptional yes no 0.687 0.932 0.354 1e-33
O84463238 Probable transcriptional yes no 0.693 0.941 0.347 3e-33
Q824H7238 Probable transcriptional yes no 0.687 0.932 0.350 2e-32
Q5L6U7238 Probable transcriptional yes no 0.693 0.941 0.338 4e-32
>sp|O82314|U082_ARATH Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2 Back     alignment and function desciption
 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/336 (70%), Positives = 266/336 (79%), Gaps = 20/336 (5%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           M SH S R    IL R SNGVSS+   NS   + H LLS  + ++ SS+SS  P     H
Sbjct: 1   MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54

Query: 61  ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
                       C    Q+R I    P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct: 55  FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114

Query: 107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
           SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct: 115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174

Query: 167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
           VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL 
Sbjct: 175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234

Query: 227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
           IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct: 235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294

Query: 287 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
           LP+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct: 295 LPLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330

Arabidopsis thaliana (taxid: 3702)
>sp|Q9PJT5|Y742_CHLMU Probable transcriptional regulatory protein TC_0742 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0742 PE=3 SV=1 Back     alignment and function description
>sp|Q9Z7Y0|Y573_CHLPN Probable transcriptional regulatory protein CPn_0573/CP_0176/CPj0573/CpB0595 OS=Chlamydia pneumoniae GN=CPn_0573 PE=3 SV=1 Back     alignment and function description
>sp|B0B830|Y717_CHLT2 Probable transcriptional regulatory protein CTL0717 OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=CTL0717 PE=3 SV=1 Back     alignment and function description
>sp|B0BC95|Y713_CHLTB Probable transcriptional regulatory protein CTLon_0713 OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=CTLon_0713 PE=3 SV=1 Back     alignment and function description
>sp|Q3KLP1|Y499_CHLTA Probable transcriptional regulatory protein CTA_0499 OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=CTA_0499 PE=3 SV=1 Back     alignment and function description
>sp|Q253C8|Y838_CHLFF Probable transcriptional regulatory protein CF0838 OS=Chlamydophila felis (strain Fe/C-56) GN=CF0838 PE=3 SV=1 Back     alignment and function description
>sp|O84463|Y457_CHLTR Probable transcriptional regulatory protein CT_457 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_457 PE=3 SV=1 Back     alignment and function description
>sp|Q824H7|Y169_CHLCV Probable transcriptional regulatory protein CCA_00169 OS=Chlamydophila caviae (strain GPIC) GN=CCA_00169 PE=3 SV=1 Back     alignment and function description
>sp|Q5L6U7|Y166_CHLAB Probable transcriptional regulatory protein CAB166 OS=Chlamydophila abortus (strain S26/3) GN=CAB166 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
225429934319 PREDICTED: UPF0082 protein At2g25830 [Vi 0.984 0.996 0.773 1e-133
255550912311 conserved hypothetical protein [Ricinus 0.925 0.961 0.754 1e-126
18400953331 YebC-related protein [Arabidopsis thalia 0.978 0.954 0.702 1e-120
297825653327 hypothetical protein ARALYDRAFT_320374 [ 0.969 0.957 0.722 1e-119
15810383330 unknown protein [Arabidopsis thaliana] g 0.975 0.954 0.699 1e-118
224089014292 predicted protein [Populus trichocarpa] 0.826 0.914 0.791 1e-117
356515613306 PREDICTED: UPF0082 protein At2g25830-lik 0.879 0.928 0.736 1e-115
356515611295 PREDICTED: UPF0082 protein At2g25830-lik 0.869 0.952 0.753 1e-115
449461317320 PREDICTED: probable transcriptional regu 0.969 0.978 0.669 1e-111
357466655346 hypothetical protein MTR_3g109620 [Medic 0.904 0.843 0.639 1e-110
>gi|225429934|ref|XP_002283851.1| PREDICTED: UPF0082 protein At2g25830 [Vitis vinifera] gi|296081846|emb|CBI20851.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/322 (77%), Positives = 285/322 (88%), Gaps = 4/322 (1%)

Query: 1   MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGLLSRNLFSSASSISSWIPLYEVKH 60
           MGS+SS RA GA+LHR SNGV  K S NS AL + G L +N  SS SS SSW+ LYEVK 
Sbjct: 1   MGSYSSIRAFGALLHRFSNGVPFKHS-NSVAL-RTGFLPKNP-SSFSSKSSWLSLYEVK- 56

Query: 61  CNFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNT 120
            + +VRTI+TF+PVCMGRRSSKIAGRKGAQDAKKAKLYS++GKEV+SAVK+ GPNP SNT
Sbjct: 57  LSVRVRTIQTFSPVCMGRRSSKIAGRKGAQDAKKAKLYSKIGKEVVSAVKRDGPNPKSNT 116

Query: 121 VLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITR 180
           +LAAVLEKAKELDVPK+IVERNIKRASEKGQEA+IEK YEVYG+GGVS+++EVLTDKI R
Sbjct: 117 ILAAVLEKAKELDVPKEIVERNIKRASEKGQEAYIEKFYEVYGFGGVSMIIEVLTDKINR 176

Query: 181 SVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPP 240
           SVAAVREV+KDCGGKMADPGSVMFKFRRARVVN+K ++ADKDQLL IALD GAEDVIEPP
Sbjct: 177 SVAAVREVMKDCGGKMADPGSVMFKFRRARVVNVKASEADKDQLLTIALDTGAEDVIEPP 236

Query: 241 VNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAME 300
           V EDD +EDR+E YYK+V++++NY+ I  KLRE GI FETDNG E+LPITTIEVDDEAM+
Sbjct: 237 VYEDDAEEDRSESYYKIVTSAENYSAILEKLREEGINFETDNGFEMLPITTIEVDDEAMD 296

Query: 301 LNKELIAKLLELDDVDAVYTDQ 322
           LNKEL++KLLELDDVDAVY DQ
Sbjct: 297 LNKELMSKLLELDDVDAVYMDQ 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550912|ref|XP_002516504.1| conserved hypothetical protein [Ricinus communis] gi|223544324|gb|EEF45845.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|18400953|ref|NP_565610.1| YebC-related protein [Arabidopsis thaliana] gi|22096384|sp|O82314.2|U082_ARATH RecName: Full=Probable transcriptional regulatory protein At2g25830 gi|20197365|gb|AAC42247.2| expressed protein [Arabidopsis thaliana] gi|330252663|gb|AEC07757.1| YebC-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825653|ref|XP_002880709.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp. lyrata] gi|297326548|gb|EFH56968.1| hypothetical protein ARALYDRAFT_320374 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15810383|gb|AAL07079.1| unknown protein [Arabidopsis thaliana] gi|21281203|gb|AAM45134.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224089014|ref|XP_002308602.1| predicted protein [Populus trichocarpa] gi|222854578|gb|EEE92125.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515613|ref|XP_003526493.1| PREDICTED: UPF0082 protein At2g25830-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356515611|ref|XP_003526492.1| PREDICTED: UPF0082 protein At2g25830-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449461317|ref|XP_004148388.1| PREDICTED: probable transcriptional regulatory protein At2g25830-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357466655|ref|XP_003603612.1| hypothetical protein MTR_3g109620 [Medicago truncatula] gi|355492660|gb|AES73863.1| hypothetical protein MTR_3g109620 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
TAIR|locus:2043480331 AT2G25830 [Arabidopsis thalian 0.978 0.954 0.681 6.1e-110
UNIPROTKB|P62036247 GSU1074 "Probable transcriptio 0.702 0.919 0.351 4.7e-32
TIGR_CMR|GSU_1074247 GSU_1074 "conserved hypothetic 0.702 0.919 0.351 4.7e-32
UNIPROTKB|Q609L3248 MCA1220 "Probable transcriptio 0.705 0.919 0.351 7.7e-32
UNIPROTKB|Q3Z9B1251 DET0444 "Probable transcriptio 0.678 0.872 0.330 3.4e-29
TIGR_CMR|DET_0444251 DET_0444 "conserved hypothetic 0.678 0.872 0.330 3.4e-29
UNIPROTKB|Q4K7D6248 PFL_4766 "Probable transcripti 0.702 0.915 0.341 5.6e-29
UNIPROTKB|P0A8A2238 yeeN "conserved protein" [Esch 0.718 0.974 0.327 9.1e-29
UNIPROTKB|Q5LUI2246 SPO1072 "Probable transcriptio 0.699 0.918 0.349 2.4e-28
TIGR_CMR|SPO_1072246 SPO_1072 "conserved hypothetic 0.699 0.918 0.349 2.4e-28
TAIR|locus:2043480 AT2G25830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 229/336 (68%), Positives = 255/336 (75%)

Query:     1 MGSHSSTRAVGAILHRISNGVSSKWSPNSFALSKHGXXXXXXXXXXXXXXXWIPLYEVKH 60
             M SH S R    IL R SNGVSS+   NS   + H                  P     H
Sbjct:     1 MASHCSMRV---ILLRFSNGVSSRSILNS---TNHRLLSLTMTNTLSSLSSISPHTTTSH 54

Query:    61 ------------C--NFQVRTIRTFAPVCMGRRSSKIAGRKGAQDAKKAKLYSRMGKEVI 106
                         C    Q+R I    P+CMGRRSSKIAGRKGAQD+KKAKLY R+GKEV+
Sbjct:    55 FTAASQQSDDQNCFRKLQLRKISISTPLCMGRRSSKIAGRKGAQDSKKAKLYCRIGKEVV 114

Query:   107 SAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKGQEAFIEKVYEVYGYGG 166
             SAVKKGGPNP SNT LA +L+KAKELDVPKDIVERNIKRASEKGQEAFIEK+YEVYGYGG
Sbjct:   115 SAVKKGGPNPVSNTTLATILDKAKELDVPKDIVERNIKRASEKGQEAFIEKIYEVYGYGG 174

Query:   167 VSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLD 226
             VS+VVEVLTDKI RSVAA+R VVKD GGKMAD GSVMFKF+R RVVNIK T+ADKDQLL 
Sbjct:   175 VSMVVEVLTDKINRSVAAIRSVVKDYGGKMADSGSVMFKFKRVRVVNIKVTEADKDQLLI 234

Query:   227 IALDAGAEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSEL 286
             IALDAGAEDVIEPP  EDDTDEDR ERYYK+V++++NY+ I +KLR+ G+ FE DNGSEL
Sbjct:   235 IALDAGAEDVIEPPTYEDDTDEDREERYYKIVTSNENYSTILSKLRDEGVNFEPDNGSEL 294

Query:   287 LPITTIEVDDEAMELNKELIAKLLELDDVDAVYTDQ 322
             LP+TT+EVDDEAMELNKEL+ KLLELDDVDAVY DQ
Sbjct:   295 LPLTTVEVDDEAMELNKELMQKLLELDDVDAVYIDQ 330
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0042819 "vitamin B6 biosynthetic process" evidence=RCA
UNIPROTKB|P62036 GSU1074 "Probable transcriptional regulatory protein GSU1074" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1074 GSU_1074 "conserved hypothetical protein TIGR01033" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q609L3 MCA1220 "Probable transcriptional regulatory protein MCA1220" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z9B1 DET0444 "Probable transcriptional regulatory protein DET0444" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0444 DET_0444 "conserved hypothetical protein TIGR01033" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K7D6 PFL_4766 "Probable transcriptional regulatory protein PFL_4766" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8A2 yeeN "conserved protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LUI2 SPO1072 "Probable transcriptional regulatory protein SPO1072" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1072 SPO_1072 "conserved hypothetical protein TIGR01033" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O82314U082_ARATHNo assigned EC number0.70230.97830.9546yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT2G25830
YebC-related; YebC-related; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF28 (InterPro-IPR002876), Integrase, N-terminal zinc-binding domain-like (InterPro-IPR017856); Has 5804 Blast hits to 5804 proteins in 1592 species- Archae - 0; Bacteria - 3381; Metazoa - 59; Fungi - 77; Plants - 19; Viruses - 0; Other Eukaryotes - 2268 (source- NCBI BLink). (331 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G56050
GTP-binding protein-related; GTP-binding protein-related; FUNCTIONS IN- GTP binding; INVOLVED I [...] (421 aa)
•  •  • 0.842
PDX2
PDX2 (PYRIDOXINE BIOSYNTHESIS 2); glutaminase/ glutaminyl-tRNA synthase (glutamine-hydrolyzing) [...] (255 aa)
•     • 0.815
PDF1B
PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase; encodes a peptide defor [...] (273 aa)
•  •    0.781
AT3G08740
elongation factor P (EF-P) family protein; elongation factor P (EF-P) family protein; FUNCTIONS [...] (236 aa)
•  •    0.763
AT4G11175
translation initiation factor IF-1, chloroplast, putative; translation initiation factor IF-1, [...] (141 aa)
•  •    0.751
AT4G33760
tRNA synthetase class II (D, K and N) family protein; tRNA synthetase class II (D, K and N) fam [...] (664 aa)
•  •  • 0.747
CP33
CP33; RNA binding; chloroplast RNA-binding protein (329 aa)
   •    0.744
AT3G12930
unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN [...] (238 aa)
•  •    0.742
OVA6
OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA [...] (543 aa)
•  •    0.706
AT3G18680
aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase famil [...] (339 aa)
•  •    0.706

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
pfam01709234 pfam01709, Transcrip_reg, Transcriptional regulato 1e-81
COG0217241 COG0217, COG0217, Uncharacterized conserved protei 1e-65
PRK00110245 PRK00110, PRK00110, hypothetical protein; Validate 3e-65
PRK12378235 PRK12378, PRK12378, hypothetical protein; Provisio 3e-61
TIGR01033238 TIGR01033, TIGR01033, DNA-binding regulatory prote 3e-59
>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator Back     alignment and domain information 
 Score =  246 bits (631), Expect = 1e-81
 Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 14/244 (5%)

Query: 78  RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKD 137
            + + I  RK AQDAK+ K+++++GKE+  A K GGP+P  N  L   +EKAK  ++PKD
Sbjct: 1   SKWANIKHRKAAQDAKRGKIFTKLGKEITVAAKMGGPDPEGNPRLRLAIEKAKAANMPKD 60

Query: 138 IVERNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKM 196
            +ER IK+ S     E + E  YE YG GGV+I+VE LTD   R+ A VR      GG +
Sbjct: 61  NIERAIKKGSGGLDGENYEEIRYEGYGPGGVAIIVECLTDNRNRTAADVRHAFSKNGGNL 120

Query: 197 ADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYK 256
            + GSV + F R  V+  +    D+D+LL+ AL+AGAEDV E    ED +         +
Sbjct: 121 GETGSVSYMFDRKGVIVFEKEGVDEDELLEAALEAGAEDVEE----EDGS--------IE 168

Query: 257 VVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD 316
           V++   ++  +   L EAG+  E      ++P  T+E+D+E  E  ++LI  L +LDDV 
Sbjct: 169 VITDPTDFEAVKKALEEAGLEIE-SAEITMIPQNTVELDEEDAEKLEKLIDALEDLDDVQ 227

Query: 317 AVYT 320
            VY 
Sbjct: 228 NVYH 231

This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region. Length = 234
>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
COG0217241 Uncharacterized conserved protein [Function unknow 100.0
PRK12378235 hypothetical protein; Provisional 100.0
PRK00110245 hypothetical protein; Validated 100.0
TIGR01033238 DNA-binding regulatory protein, YebC/PmpR family. 100.0
PF01709234 Transcrip_reg: Transcriptional regulator; InterPro 100.0
KOG2972276 consensus Uncharacterized conserved protein [Funct 100.0
PRK07562 1220 ribonucleotide-diphosphate reductase subunit alpha 98.75
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 89.03
PF0392779 NapD: NapD protein; InterPro: IPR005623 This entry 81.23
>COG0217 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-88  Score=621.03  Aligned_cols=233  Identities=40%  Similarity=0.648  Sum_probs=223.1

Q ss_pred             Cc-chhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC-Cccc
Q 020672           76 MG-RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQEA  153 (323)
Q Consensus        76 mG-~kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~-~~~~  153 (323)
                      +| +||+||||+|+++|++|+|+|+||+|+|++|||.|||||++||+||.+|++||+.|||||+|||||+||+|. ++.+
T Consensus         2 aGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg~dP~~NprLr~aI~kAk~~nmPkd~IerAI~ka~G~~d~~~   81 (241)
T COG0217           2 AGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGGKDGAN   81 (241)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCCccc
Confidence            34 599999999999999999999999999999999999999999999999999999999999999999999974 5579


Q ss_pred             eeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCCC
Q 020672          154 FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGA  233 (323)
Q Consensus       154 ~~e~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaGA  233 (323)
                      |+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+.....++|++||.|||+||
T Consensus        82 ~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ieaga  161 (241)
T COG0217          82 YEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGA  161 (241)
T ss_pred             eEEEEEEeECCCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHHCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999877899999999999999


Q ss_pred             cccccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccCC
Q 020672          234 EDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELD  313 (323)
Q Consensus       234 EDV~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~d  313 (323)
                      |||+..            ++.|+|+|+|++|.+|+++|+++|+++.. +++.|+|+++|++++|+.+++++|||+|||+|
T Consensus       162 eDv~~~------------~~~~~V~t~p~~~~~V~~~L~~~g~~~~~-ael~~iP~~~v~~~~e~a~k~~kLid~LEd~D  228 (241)
T COG0217         162 EDVEED------------EGSIEVYTEPEDFNKVKEALEAAGYEIES-AELTMIPQNTVELDDEDAEKLEKLIDALEDDD  228 (241)
T ss_pred             hhhhcC------------CCeEEEEEChHHHHHHHHHHHHcCCceee-eeEEEecCCceecCHHHHHHHHHHHHHHhccc
Confidence            999761            24799999999999999999999999986 49999999999999999999999999999999


Q ss_pred             Ccceeecc
Q 020672          314 DVDAVYTD  321 (323)
Q Consensus       314 DV~~VY~N  321 (323)
                      |||+||||
T Consensus       229 DVQ~Vy~N  236 (241)
T COG0217         229 DVQNVYHN  236 (241)
T ss_pred             chHHHHhc
Confidence            99999999

>PRK12378 hypothetical protein; Provisional Back     alignment and domain information
>PRK00110 hypothetical protein; Validated Back     alignment and domain information
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family Back     alignment and domain information
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins Back     alignment and domain information
>KOG2972 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
1lfp_A249 Crystal Structure Of A Conserved Hypothetical Prote 2e-27
1kon_A249 Crystal Structure Of E.Coli Yebc Length = 249 4e-27
4f3q_A247 Structure Of A Yebc Family Protein (Cbu_1566) From 2e-23
1mw7_A240 X-Ray Structure Of Y162_helpy Northeast Structural 2e-14
>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aquifex Aeolicus Length = 249 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 17/244 (6%)
Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           ++I  +K   DA++ KL+S++ +E+I A + GGPNP  N  L   +E+AK+ + P + +E
Sbjct: 8   AQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANXPWENIE 67
Query: 141 RNIKR-ASEKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R IK+ A E   E F E +YE Y  GGV++ V   TD   R+ + VR V    GG +   
Sbjct: 68  RAIKKGAGELEGEQFEEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTKHGGNLGAS 127
Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           G V + F R   + +   +  +++LL+ A++ GAEDV +P            E  + + +
Sbjct: 128 GCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDV-QP-----------GEEVHIIYT 175
Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDE--AMELNKELIAKLLELDDVDA 317
             +   ++   L + G+P E    +   PI+T++++DE  A ++ K L+  L ELDDV  
Sbjct: 176 VPEELYEVKENLEKLGVPIEKAQIT-WKPISTVQINDEETAQKVIK-LLNALEELDDVQQ 233
Query: 318 VYTD 321
           V  +
Sbjct: 234 VIAN 237
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249 Back     alignment and structure
>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247 Back     alignment and structure
>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural Genomics Consortium Target Pr6 Length = 240 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
1kon_A249 Protein YEBC, YEBC; alpha/beta, two-domains, montr 4e-63
4f3q_A247 Transcriptional regulatory protein CBU_1566; YEBC 5e-63
1lfp_A249 Hypothetical protein AQ_1575; NEW fold, thermostab 1e-61
1mw7_A240 Hypothetical protein HP0162; structural genomics, 3e-61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249 Back     alignment and structure
 Score =  199 bits (509), Expect = 4e-63
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 15/241 (6%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           +    RK AQDAK+ K+++++ +E+++A K GG +P +N  L A ++KA   ++ +D + 
Sbjct: 11  ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 70

Query: 141 RNIKRAS-EKGQEAFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R I R             +YE YG GG +I++E L+D   R+VA VR     CGG +   
Sbjct: 71  RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 130

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           GSV + F +  V  I F   D+D +++ AL+AGAEDV+     +D            V +
Sbjct: 131 GSVAYLFSKKGV--ISFEKGDEDTIMEAALEAGAEDVVT---YDDG--------AIDVYT 177

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
             +    +   L  AG+  +      ++P T  ++D E       LI  L + DDV  VY
Sbjct: 178 AWEEMGKVRDALEAAGLKAD-SAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 236

Query: 320 T 320
            
Sbjct: 237 H 237
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247 Back     alignment and structure
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249 Back     alignment and structure
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
4f3q_A247 Transcriptional regulatory protein CBU_1566; YEBC 100.0
1lfp_A249 Hypothetical protein AQ_1575; NEW fold, thermostab 100.0
1kon_A249 Protein YEBC, YEBC; alpha/beta, two-domains, montr 100.0
1mw7_A240 Hypothetical protein HP0162; structural genomics, 100.0
2jsx_A95 Protein NAPD; TAT, proofreading, cytoplasm, chaper 81.53
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=2e-89  Score=636.56  Aligned_cols=234  Identities=31%  Similarity=0.547  Sum_probs=217.8

Q ss_pred             cCcc-hhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccC-Ccc
Q 020672           75 CMGR-RSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEK-GQE  152 (323)
Q Consensus        75 ~mG~-kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~-~~~  152 (323)
                      ++|| ||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.||+||.+|++||+.|||||+||||||||+|. ++.
T Consensus         4 maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~   83 (247)
T 4f3q_A            4 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGAGD   83 (247)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----C
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCcC
Confidence            4565 99999999999999999999999999999999999999999999999999999999999999999999986 567


Q ss_pred             ceeEEEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCC
Q 020672          153 AFIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAG  232 (323)
Q Consensus       153 ~~~e~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaG  232 (323)
                      +|+|++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+... .++|++||.|||+|
T Consensus        84 ~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~~d~~~e~aieaG  162 (247)
T 4f3q_A           84 NLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-SDEEKIMEIALEVG  162 (247)
T ss_dssp             CCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTT-CCHHHHHHHHHHHT
T ss_pred             CceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCC-CCHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999999999999764 79999999999999


Q ss_pred             CcccccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccC
Q 020672          233 AEDVIEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLEL  312 (323)
Q Consensus       233 AEDV~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~  312 (323)
                      ||||++.    |       ++.|+|+|+|++|.+|+++|+++||++++ ++++|+|+++|+|++|+++++++|+|+|+|+
T Consensus       163 AeDv~~~----e-------dg~~~v~t~p~~~~~V~~aL~~~g~~~~~-aei~~~P~~~v~l~~e~~~~~~klid~Led~  230 (247)
T 4f3q_A          163 AEDVTTN----D-------DGSIDVTTLPEDFEKIRNAMKAADLNPSH-AEVTVLASTEVGLDKDSAEQMLRLTEMLEDL  230 (247)
T ss_dssp             CSEEEEC----T-------TSCEEEEECGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCEECCHHHHHHHHHHHHHHHTS
T ss_pred             Cceeeec----C-------CceEEEEECHHHHHHHHHHHHHcCCCeeE-EEEEEecCCccccCHHHHHHHHHHHHHhhcC
Confidence            9999762    1       13699999999999999999999999986 5999999999999999999999999999999


Q ss_pred             CCcceeecc
Q 020672          313 DDVDAVYTD  321 (323)
Q Consensus       313 dDV~~VY~N  321 (323)
                      ||||+||||
T Consensus       231 dDVq~Vy~N  239 (247)
T 4f3q_A          231 DDVQNVYSN  239 (247)
T ss_dssp             TTEEEEEEC
T ss_pred             cCcceeeEC
Confidence            999999999
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Back     alignment and structure
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Back     alignment and structure
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Back     alignment and structure
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1kona_244 e.39.1.1 (A:) Hypothetical protein YebC {Escherich 4e-53
d1lfpa_243 e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex 7e-45
d1mw7a_220 e.39.1.1 (A:) Hypothetical protein HP0162 {Helicob 2e-36
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

 Score =  172 bits (437), Expect = 4e-53
 Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 15/241 (6%)

Query: 81  SKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVE 140
           +    RK AQDAK+ K+++++ +E+++A K GG +P +N  L A ++KA   ++ +D + 
Sbjct: 6   ANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLN 65

Query: 141 RNIKRASEKGQEA-FIEKVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADP 199
           R I R      +A     +YE YG GG +I++E L+D   R+VA VR     CGG +   
Sbjct: 66  RAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTD 125

Query: 200 GSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDVIEPPVNEDDTDEDRAERYYKVVS 259
           GSV   +  ++   I F   D+D +++ AL+AGA       V   D           V +
Sbjct: 126 GSV--AYLFSKKGVISFEKGDEDTIMEAALEAGA-----EDVVTYDDG------AIDVYT 172

Query: 260 TSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVDAVY 319
             +    +   L  AG+  ++     ++P T  ++D E       LI  L + DDV  VY
Sbjct: 173 AWEEMGKVRDALEAAGLKADSA-EVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVY 231

Query: 320 T 320
            
Sbjct: 232 H 232
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243 Back     information, alignment and structure
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1kona_244 Hypothetical protein YebC {Escherichia coli [TaxId 100.0
d1lfpa_243 Hypothetical protein aq1575 {Aquifex aeolicus [Tax 100.0
d1mw7a_220 Hypothetical protein HP0162 {Helicobacter pylori [ 100.0
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-85  Score=608.43  Aligned_cols=230  Identities=32%  Similarity=0.548  Sum_probs=210.8

Q ss_pred             chhhHHhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHhccCC-ccceeE
Q 020672           78 RRSSKIAGRKGAQDAKKAKLYSRMGKEVISAVKKGGPNPTSNTVLAAVLEKAKELDVPKDIVERNIKRASEKG-QEAFIE  156 (323)
Q Consensus        78 ~kWsnIKh~Kaa~DakKsklfsKl~keI~~Avk~GG~DP~~N~~La~aI~kAK~~nmPKd~IErAIkra~g~~-~~~~~e  156 (323)
                      +||+||||+|+++|++|+|+|+||+|+|++|||+|||||+.|++||++|++||+.||||++||||||||+|.. +.+|+|
T Consensus         3 sKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~~~~~~~~e   82 (244)
T d1kona_           3 SKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMET   82 (244)
T ss_dssp             CSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CCCEE
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHcCCchHHHHHHHHhccCCCCCCceEE
Confidence            4999999999999999999999999999999999999999999999999999999999999999999998763 458999


Q ss_pred             EEEEEEecCCcEEEEEEecCChhhHHHHHHHHHhhcCccccCCcceeeeceeeEEEEEeCCCCCHHHHHHHHHHCCCccc
Q 020672          157 KVYEVYGYGGVSIVVEVLTDKITRSVAAVREVVKDCGGKMADPGSVMFKFRRARVVNIKFTDADKDQLLDIALDAGAEDV  236 (323)
Q Consensus       157 ~~YEg~GPgGvaiIVE~lTDN~nRT~~~vR~~f~K~GG~l~~~gsV~f~F~~kGvI~v~~~~~d~D~lle~AIEaGAEDV  236 (323)
                      ++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+...  ++|++||.|||+||+||
T Consensus        83 ~~yEg~gp~gvaiiVe~lTDN~nRt~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~--~~d~l~e~aie~gAeDv  160 (244)
T d1kona_          83 IIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG--DEDTIMEAALEAGAEDV  160 (244)
T ss_dssp             EEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS--CHHHHHHHHHHHTCSEE
T ss_pred             EEEEEEcCCccEEEEEEecCcHHHHHHHHHHHHHHcCCeeCCCccHhhhhheeceeccCCC--CHHHHHHHHHHhccchh
Confidence            9999999999999999999999999999999999999999999999999999999999753  79999999999999999


Q ss_pred             ccCCCCCCCCcccccCceEEEEeCcccHHHHHHHHHhCCCCeeecccceeecCCccccCHHHHHHHHHHHHHHccCCCcc
Q 020672          237 IEPPVNEDDTDEDRAERYYKVVSTSDNYTDITTKLREAGIPFETDNGSELLPITTIEVDDEAMELNKELIAKLLELDDVD  316 (323)
Q Consensus       237 ~~~~~~ed~~~ed~~~~~~~v~~~p~~l~~V~~~L~~~G~~i~~~~~i~~iP~~~Vel~~e~~~~~~~lid~Lee~dDV~  316 (323)
                      ++.    |       ++.|+|+|+|++|.+|+++|++.||+++. ++++|+|+++|+|++++++++.+|+|+|+|+||||
T Consensus       161 ~~~----d-------~~~~~i~~~~~dl~~v~~~Le~~g~~~~~-aei~~~P~~~v~l~~e~~~k~~kLid~Led~DDVq  228 (244)
T d1kona_         161 VTY----D-------DGAIDVYTAWEEMGKVRDALEAAGLKADS-AEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQ  228 (244)
T ss_dssp             EEC----T-------TSCEEEEEEGGGHHHHHHHHHHTTCCCSE-EEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEE
T ss_pred             ccc----C-------CCceEEEecchhHHHHHHHHHhcCCCcee-eeEEEEeCCccccCHHHHHHHHHHHHHHhcccCcc
Confidence            763    1       14689999999999999999999999997 49999999999999999999999999999999999


Q ss_pred             eeecc
Q 020672          317 AVYTD  321 (323)
Q Consensus       317 ~VY~N  321 (323)
                      +||||
T Consensus       229 ~Vy~N  233 (244)
T d1kona_         229 EVYHN  233 (244)
T ss_dssp             EEEEC
T ss_pred             eEEEC
Confidence            99999
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure