Citrus Sinensis ID: 021017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCRNNNASSRASASS
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccEEEEEccHHHHHHHHHHccccEEEEEEEEccHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHcHHHHHHHccccccccEEEEEcccHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccccccccccccccccccHcccccccHHEEcccEEEEEEccccccccccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcHHHHHcccccEEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mknsnsntklillhpyiqkqgtsnRLWLLAFVSFFTIAFLLTLIYTREsislkttsgsaatmdtkstssvsagfgnpplpttVINTLLLYAsrsndsyhmtHSELKRISDVIRkcsspcnflvFGLTQETLLWKALNHNgrtvfidenRYYAAYFEElhpeidvfdvqyTTKIRETKELIASAKEQIRNECKPVQNLLFSECKlgindlpnhvyevdwdvilidgprgdgpdgpgrmspifTAGVLArskkggnpkthiFVHDYYRHvermcgdeflckENLVEFNDMLAHFVLEkmdensfefcrnnnassrasass
Flexible Loop (DISEMBL)
mknsnsntkliLLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKttsgsaatmdTKSTssvsagfgnppLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLarskkggnpktHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCrnnnassrasass
Low Complexity Region (SEG)
MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIdgprgdgpdgpgrMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCrnnnassrasass
Disordered region (IsUnstruct)
********KLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESIS***************************LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDG**************IFTAGVLAR*****NPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFC*************
Disordered Region (DISOPRED)
**************************WLLAFVSFFTIAFLLTLIYTRESI********************************VINTLLLYAS************LKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKE**********NLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA******NPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVL************************
Disordered Region (DISEMBL)
MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISL*******************AGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCRN***********
Disordered Region (DISPRO)
*****SNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRE****************************PPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKM*********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCRNNNASSRASASS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q9FH92	317	Protein IRX15-LIKE OS=Ara	yes	no	0.977	0.981	0.719	1e-138
Q9SNE5	322	Protein IRREGULAR XYLEM 1	no	no	0.996	0.984	0.708	1e-134
Q9LQ32	297	Glucuronoxylan 4-O-methyl	no	no	0.657	0.703	0.384	2e-38
Q6NMK1	282	Glucuronoxylan 4-O-methyl	no	no	0.789	0.890	0.337	5e-36
Q9T0F7	290	Glucuronoxylan 4-O-methyl	no	no	0.654	0.717	0.378	2e-35

>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 226/314 (71%), Positives = 268/314 (85%), Gaps = 3/314 (0%)

Query: 5   NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDT 64
           N+NTKLIL+HPYIQKQ ++NRLWLLAFVSFFTIAFLLTL+YT +SI   ++  ++AT+ +
Sbjct: 6   NTNTKLILVHPYIQKQTSTNRLWLLAFVSFFTIAFLLTLLYTTDSII--SSKNNSATVSS 63

Query: 65  KSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVF 124
              S+V+    +  LPTT IN +L YASRSNDSYHM++ E+K ISDV+R+CS PCN LVF
Sbjct: 64  AVNSAVTTATISQ-LPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVF 122

Query: 125 GLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184
           GLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEI+VFDVQYTTK RE +EL+++ K
Sbjct: 123 GLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVK 182

Query: 185 EQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAG 244
           E  RNEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVIL+DGPRGDG D PGRMS IFTA 
Sbjct: 183 EAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAA 242

Query: 245 VLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEF 304
           VLARSKKGGNPKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VLEKMD+NS +F
Sbjct: 243 VLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKMDKNSTQF 302

Query: 305 CRNNNASSRASASS 318
           CR        S+ S
Sbjct: 303 CRGRKKKRSVSSPS 316

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1

 Score =  479 bits (1232), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/322 (70%), Positives = 264/322 (81%), Gaps = 5/322 (1%)

Query: 1   MKNS--NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGS 58
           MKN   N+NTKLILLHPYIQKQ ++ RLWLLAFVSFFTI FLLTL+YTR++I  K TS +
Sbjct: 1   MKNGSGNTNTKLILLHPYIQKQTSTTRLWLLAFVSFFTIVFLLTLLYTRDTIPSKNTSVA 60

Query: 59  AATMDTK---STSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKC 115
           AA        ST S S+   N  LPT+ IN LL YASRSNDS+HM++ E+K ISDV+R+C
Sbjct: 61  AAVAAVVTGGSTPSASSPISNSNLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRC 120

Query: 116 SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRE 175
           + PCN LVFGLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEIDVFDVQYTTK  E
Sbjct: 121 APPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHE 180

Query: 176 TKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPG 235
             EL+ +AKE   NEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVI +DGPRGD  +GPG
Sbjct: 181 AGELVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPG 240

Query: 236 RMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLE 295
           RMS IFTA VLARSKKGG PKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VL+
Sbjct: 241 RMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLD 300

Query: 296 KMDENSFEFCRNNNASSRASAS 317
           KMD+NS +FC      S +S S
Sbjct: 301 KMDKNSTKFCNGRKKRSVSSLS 322

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 130/216 (60%), Gaps = 7/216 (3%)

Query: 79  LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH 138
           +P ++ + L+ Y + SN +   T  E+     V+ K  SPCNFLVFGL  ++L+W +LNH
Sbjct: 69  MPLSLSDALVHYVT-SNVTPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNH 126

Query: 139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL 198
            GRT+FI+E++ + A   +  P ++ + V Y TK++++ +L+   + +   EC+ V +  
Sbjct: 127 GGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSE---ECRSVSDPR 183

Query: 199 FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTH 258
            S+C L + D P   YE  WD+I++D P G   + PGRMS I+TAG+LAR+++ G  +T 
Sbjct: 184 NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNREDG--ETD 241

Query: 259 IFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVL 294
           +FVHD  R VE      FLCK  + E N  L HF +
Sbjct: 242 VFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTI 277

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 144/261 (55%), Gaps = 10/261 (3%)

Query: 41  LTLIYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHM 100
           L LI+   S +L ++       +T+ST    +G  N  LP ++   L+ Y++ S  +   
Sbjct: 22  LILIFIVRS-TLTSSQEHQTPQETRSTRC--SGACNK-LPRSLAQALIHYST-SVITPQQ 76

Query: 101 THSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP 160
           T  E+   S V+ K  SPCNFLVFGL  ++L+W +LN+ GRTVF++E+  +    +   P
Sbjct: 77  TLKEIAVSSRVLGK-KSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFP 135

Query: 161 EIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDV 220
            ++ + V Y +K+ +   LI   K     EC  + +  +S C+L +  LP  +YE  WD+
Sbjct: 136 MLESYHVTYDSKVNQADNLIEVGKGP---ECTAIGDPRYSMCQLALKGLPAEIYETGWDL 192

Query: 221 ILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKE 280
           I++D P G   + PGRM+ I+TAG++AR++K G  +T +FVHD  R +E      FLC+ 
Sbjct: 193 IMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGG-ETDVFVHDVNREIEDKFSKAFLCEG 251

Query: 281 NLVEFNDMLAHFVLEKMDENS 301
            + +    L HF++    + S
Sbjct: 252 YMKKQEGRLRHFIIPSYRDGS 272

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 6/214 (2%)

Query: 79  LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH 138
           LPT++ + L+ Y + S  +   T  E+     V+ K  SPCNFLVFGL  ++L+W +LNH
Sbjct: 61  LPTSLSDALVHYVT-SEITPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNH 118

Query: 139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL 198
            GRT+F++E+  +     +  P ++ + V Y TK++++ +L+   + +   +CK V +  
Sbjct: 119 GGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTE---DCKAVSDPR 175

Query: 199 FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTH 258
            S+C L +   P  VYE  WDVI++D P G   + PGRMS I+TAG+LAR++  G  +T 
Sbjct: 176 DSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGG-ETD 234

Query: 259 IFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHF 292
           +FVHD  R VE      FLC   + E    L HF
Sbjct: 235 VFVHDINRPVEDEFSVAFLCGGYMKEQQGRLRHF 268

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
224081737	311	predicted protein [Populus trichocarpa]	0.946	0.967	0.822	1e-148
224096720	318	predicted protein [Populus trichocarpa]	0.955	0.955	0.793	1e-144
356511834	316	PREDICTED: uncharacterized protein LOC10	0.959	0.965	0.746	1e-138
356563598	315	PREDICTED: uncharacterized protein LOC10	0.959	0.968	0.737	1e-137
313104483	283	DUF579 protein [Populus trichocarpa]	0.883	0.992	0.817	1e-136
15240242	317	uncharacterized protein [Arabidopsis tha	0.977	0.981	0.719	1e-136
255585115	328	conserved hypothetical protein [Ricinus	0.930	0.902	0.788	1e-135
356496925	304	PREDICTED: uncharacterized protein LOC10	0.952	0.996	0.737	1e-135
313104467	283	DUF579 protein [Populus trichocarpa] gi|	0.867	0.975	0.825	1e-135
313104469	282	DUF579 protein [Populus trichocarpa] gi|	0.864	0.975	0.824	1e-134

>gi|224081737|ref|XP_002306483.1| predicted protein [Populus trichocarpa] gi|222855932|gb|EEE93479.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/305 (82%), Positives = 278/305 (91%), Gaps = 4/305 (1%)

Query: 8   TKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKST 67
           TKLILLHPYIQKQG SNRLWLLAFVSFFTIAFLLTLIYTRE++ +KT +    TM T S 
Sbjct: 9   TKLILLHPYIQKQGGSNRLWLLAFVSFFTIAFLLTLIYTRETLPIKTIT---TTMATGSA 65

Query: 68  SSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLT 127
           SS + G  N PLPTTVINTLL YASRSNDS+HM+H+E+K ISDV+RKCSSPCNFLVFGLT
Sbjct: 66  SSSTFG-NNAPLPTTVINTLLHYASRSNDSFHMSHAEIKPISDVLRKCSSPCNFLVFGLT 124

Query: 128 QETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQI 187
            ET LWKALNHNGRTVFI+ENRYYAAY+EELHPEIDVFDVQYTTK++E +ELIAS KEQI
Sbjct: 125 HETPLWKALNHNGRTVFIEENRYYAAYYEELHPEIDVFDVQYTTKMKEMRELIASTKEQI 184

Query: 188 RNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA 247
           +NEC+PVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP+GPGRM+PIFT+GVLA
Sbjct: 185 KNECRPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPEGPGRMTPIFTSGVLA 244

Query: 248 RSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCRN 307
           RSKK  N KTHIFVHDYYR+VER+ GDEFLC+ENLVE NDMLAHFV+EKMDENSF+FCRN
Sbjct: 245 RSKKASNAKTHIFVHDYYRNVERIYGDEFLCRENLVESNDMLAHFVVEKMDENSFQFCRN 304

Query: 308 NNASS 312
           + A+S
Sbjct: 305 HTAAS 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096720|ref|XP_002310711.1| predicted protein [Populus trichocarpa] gi|222853614|gb|EEE91161.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/305 (79%), Positives = 276/305 (90%), Gaps = 1/305 (0%)

Query: 8   TKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKST 67
           TKLILLHPYIQKQG SNRLWLLAFVSFFTIAFLLTLIYTRE + +K+T+ +   +   S 
Sbjct: 13  TKLILLHPYIQKQGGSNRLWLLAFVSFFTIAFLLTLIYTREILPIKSTT-TTTMVTAGSA 71

Query: 68  SSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLT 127
           SS + G  N PLPT+VINTLL YASRSNDS+HM+H+E+K ISDV+RKCSSPCNFLVFGLT
Sbjct: 72  SSSTFGNINAPLPTSVINTLLHYASRSNDSFHMSHAEIKPISDVLRKCSSPCNFLVFGLT 131

Query: 128 QETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQI 187
            ETLLWKALNHNGRTVFI+ENRYYAAY+EELHPEIDVFDVQYTTK++E +ELIAS  +QI
Sbjct: 132 HETLLWKALNHNGRTVFIEENRYYAAYYEELHPEIDVFDVQYTTKMKEMRELIASTNKQI 191

Query: 188 RNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA 247
           +NEC+PVQNLLFSECKLGINDLPNHVYEVDWD+IL+DGPRGDGPDGPGRM+PIFTAGVLA
Sbjct: 192 KNECRPVQNLLFSECKLGINDLPNHVYEVDWDLILVDGPRGDGPDGPGRMTPIFTAGVLA 251

Query: 248 RSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFCRN 307
           RS+K  N KTHIFVHDYYR+VE++ GDEFLC+ENLVE NDMLAHF++EKMDENSF FCRN
Sbjct: 252 RSRKASNAKTHIFVHDYYRNVEKIYGDEFLCRENLVESNDMLAHFIVEKMDENSFHFCRN 311

Query: 308 NNASS 312
           + ++S
Sbjct: 312 HTSTS 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511834|ref|XP_003524627.1| PREDICTED: uncharacterized protein LOC100784765 [Glycine max]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/308 (74%), Positives = 264/308 (85%), Gaps = 3/308 (0%)

Query: 1   MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAA 60
           MKN+N+NTKLILLHPYIQKQG+SNRLWLLA VS  T+AFL+TLI TRES  + T + S  
Sbjct: 1   MKNTNTNTKLILLHPYIQKQGSSNRLWLLALVSILTLAFLVTLISTRESTFITTATSSVT 60

Query: 61  TMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCN 120
                S ++  +GFG+ PLP TVINTLL YAS+SND++HM HS+LK ISDV+RKCSSPCN
Sbjct: 61  P---SSNNAPVSGFGSAPLPATVINTLLHYASKSNDTFHMPHSDLKPISDVLRKCSSPCN 117

Query: 121 FLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELI 180
           FL+FGLT ETLLWKALNHNGRTVFIDENRYYAAY+EELHPEID +DVQYTTK  E KELI
Sbjct: 118 FLIFGLTPETLLWKALNHNGRTVFIDENRYYAAYYEELHPEIDAYDVQYTTKRSEMKELI 177

Query: 181 ASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPI 240
           ASAKEQ+ NECKPVQNLLFSECKLG+NDLPNHVYEVDWDVIL+DGPRGD PD PGRMS I
Sbjct: 178 ASAKEQVANECKPVQNLLFSECKLGLNDLPNHVYEVDWDVILVDGPRGDWPDAPGRMSAI 237

Query: 241 FTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDEN 300
           FT GVLARSKKGGNPKTH+F+HD+   VE++CG EFLC ENL+E N  L H+VLE+MDEN
Sbjct: 238 FTVGVLARSKKGGNPKTHVFLHDFSGEVEKVCGSEFLCNENLLEANGNLGHYVLERMDEN 297

Query: 301 SFEFCRNN 308
           S ++C+N+
Sbjct: 298 SVQYCKNH 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563598|ref|XP_003550048.1| PREDICTED: uncharacterized protein LOC100790865 [Glycine max]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/308 (73%), Positives = 269/308 (87%), Gaps = 3/308 (0%)

Query: 1   MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAA 60
           MK++N+NTKLILLHPYIQKQG+SNRLWLLAF+S  T+AFL+TLIYTRES  +  T+ +++
Sbjct: 1   MKSTNTNTKLILLHPYIQKQGSSNRLWLLAFISILTLAFLVTLIYTRESTFI--TAATSS 58

Query: 61  TMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCN 120
            + + + + VS GFG+ PLP TVINTLL YAS+SND++HM HS+LK ISDV+RKCSSPCN
Sbjct: 59  VIPSSNNAPVS-GFGSAPLPATVINTLLHYASKSNDTFHMPHSDLKPISDVLRKCSSPCN 117

Query: 121 FLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELI 180
           FL+FGLT ETLLWKALNHNGRTVFIDENRYYAAY+EELHP ID +DVQYTTK  E KELI
Sbjct: 118 FLIFGLTPETLLWKALNHNGRTVFIDENRYYAAYYEELHPNIDAYDVQYTTKRSEMKELI 177

Query: 181 ASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPI 240
           ASAKEQ+ NECKPVQNLLFS+CKLG+NDLPNHVYE+DWDVIL+DGPRGD PD PGRMS I
Sbjct: 178 ASAKEQVANECKPVQNLLFSDCKLGLNDLPNHVYEIDWDVILVDGPRGDWPDAPGRMSTI 237

Query: 241 FTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDEN 300
           FTAG+LARSKKGGNPKTH+F+HD+   VE++CG EFLC ENL+E N  L H+VLE+MDEN
Sbjct: 238 FTAGILARSKKGGNPKTHVFLHDFSGEVEKVCGSEFLCNENLLEANGNLGHYVLERMDEN 297

Query: 301 SFEFCRNN 308
           S ++C N+
Sbjct: 298 SVQYCNNH 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313104483|gb|ADR31620.1| DUF579 protein [Populus trichocarpa]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/285 (81%), Positives = 259/285 (90%), Gaps = 4/285 (1%)

Query: 3   NSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATM 62
           N+++NTKLILLHPYIQKQG SNRLWLLAFVSFFTIAFLLTLIYTRE++ +KT +    TM
Sbjct: 3   NNHNNTKLILLHPYIQKQGGSNRLWLLAFVSFFTIAFLLTLIYTRETLPIKTIT---TTM 59

Query: 63  DTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFL 122
            T S SS + G  N PLPTTVINTLL YASRSNDS+HM+H+E+K ISDV+RKCSSPCNFL
Sbjct: 60  ATGSASSSTFG-NNAPLPTTVINTLLHYASRSNDSFHMSHAEIKPISDVLRKCSSPCNFL 118

Query: 123 VFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIAS 182
           VFGLT ET LWKALNHNGRTVFI+ENRYYAAY+EELHPEIDVFDVQYTTK++E +ELIAS
Sbjct: 119 VFGLTHETPLWKALNHNGRTVFIEENRYYAAYYEELHPEIDVFDVQYTTKMKEMRELIAS 178

Query: 183 AKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFT 242
            KEQI+NEC+PVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP+GPGRM+PIFT
Sbjct: 179 TKEQIKNECRPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPEGPGRMTPIFT 238

Query: 243 AGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFND 287
           +GVLARSKK  N KTHIFVHDYYR+VER+ GDEFLC+ENLVE ND
Sbjct: 239 SGVLARSKKASNAKTHIFVHDYYRNVERIYGDEFLCRENLVESND 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240242|ref|NP_201522.1| uncharacterized protein [Arabidopsis thaliana] gi|75170575|sp|Q9FH92.1|IX15L_ARATH RecName: Full=Protein IRX15-LIKE gi|10177608|dbj|BAB10955.1| unnamed protein product [Arabidopsis thaliana] gi|27765046|gb|AAO23644.1| At5g67210 [Arabidopsis thaliana] gi|110743406|dbj|BAE99589.1| hypothetical protein [Arabidopsis thaliana] gi|332010931|gb|AED98314.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/314 (71%), Positives = 268/314 (85%), Gaps = 3/314 (0%)

Query: 5   NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDT 64
           N+NTKLIL+HPYIQKQ ++NRLWLLAFVSFFTIAFLLTL+YT +SI   ++  ++AT+ +
Sbjct: 6   NTNTKLILVHPYIQKQTSTNRLWLLAFVSFFTIAFLLTLLYTTDSII--SSKNNSATVSS 63

Query: 65  KSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVF 124
              S+V+    +  LPTT IN +L YASRSNDSYHM++ E+K ISDV+R+CS PCN LVF
Sbjct: 64  AVNSAVTTATISQ-LPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVF 122

Query: 125 GLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184
           GLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEI+VFDVQYTTK RE +EL+++ K
Sbjct: 123 GLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVK 182

Query: 185 EQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAG 244
           E  RNEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVIL+DGPRGDG D PGRMS IFTA 
Sbjct: 183 EAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAA 242

Query: 245 VLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEF 304
           VLARSKKGGNPKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VLEKMD+NS +F
Sbjct: 243 VLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKMDKNSTQF 302

Query: 305 CRNNNASSRASASS 318
           CR        S+ S
Sbjct: 303 CRGRKKKRSVSSPS 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585115|ref|XP_002533263.1| conserved hypothetical protein [Ricinus communis] gi|223526919|gb|EEF29125.1| conserved hypothetical protein [Ricinus communis]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/298 (78%), Positives = 264/298 (88%), Gaps = 2/298 (0%)

Query: 8   TKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKST 67
           TKLILLHPYIQKQG+SNRLWLLAFVSFFTIAFL+TLIYTR+S+  K T+ +A    T + 
Sbjct: 9   TKLILLHPYIQKQGSSNRLWLLAFVSFFTIAFLVTLIYTRDSLPTKATTAAATAAMTAAA 68

Query: 68  SSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLT 127
           SS  +      LPT VINTLL YASRSNDS+HM++SE+K ISDV+RKCSSPCN LVFGLT
Sbjct: 69  SSSISANAQ--LPTAVINTLLHYASRSNDSFHMSYSEIKPISDVLRKCSSPCNLLVFGLT 126

Query: 128 QETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQI 187
            ETLLWKALNHNGRTVFI+ENRYYAAY+EELHPE+DVFDVQYTTK+ E +ELI S K+QI
Sbjct: 127 HETLLWKALNHNGRTVFIEENRYYAAYYEELHPEVDVFDVQYTTKMGEFRELITSTKDQI 186

Query: 188 RNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA 247
           RNEC+PVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDG +GPGRM+PIFTAGVLA
Sbjct: 187 RNECRPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGAEGPGRMAPIFTAGVLA 246

Query: 248 RSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFC 305
           RS+K GN KTH+FVHDYYR VE++ GDEFLC+ENLVE NDMLAHFV+EKMDEN F+FC
Sbjct: 247 RSRKAGNGKTHVFVHDYYREVEKVYGDEFLCRENLVEANDMLAHFVVEKMDENCFQFC 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496925|ref|XP_003517315.1| PREDICTED: uncharacterized protein LOC100803555 [Glycine max]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/312 (73%), Positives = 268/312 (85%), Gaps = 9/312 (2%)

Query: 1   MKNSNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAA 60
           MKN+NSNTKLILLHPYIQKQG+SNRLWLLAF+SFFT+AFL TLIYTR++ S  +T+ S+ 
Sbjct: 1   MKNANSNTKLILLHPYIQKQGSSNRLWLLAFISFFTLAFLATLIYTRDTTSSSSTTTSST 60

Query: 61  TMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCN 120
            +         + F N PLP+TVINTLL YAS+SND++HM HS+LK ISDV+RKC SPCN
Sbjct: 61  PL---------SSFANTPLPSTVINTLLHYASKSNDTFHMPHSDLKTISDVLRKCPSPCN 111

Query: 121 FLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELI 180
           FL+FGLT ETLLWKALNHNGRTVFIDENRYYAAYFEE HPEID +DVQYTTK  E KELI
Sbjct: 112 FLIFGLTHETLLWKALNHNGRTVFIDENRYYAAYFEEKHPEIDAYDVQYTTKRSELKELI 171

Query: 181 ASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPI 240
           AS KEQ+ NEC+PVQNLLFSECKLG+NDLPNHVYEVDWDVIL+DGPRGD P+ PGRMSPI
Sbjct: 172 ASTKEQVGNECRPVQNLLFSECKLGLNDLPNHVYEVDWDVILVDGPRGDWPEAPGRMSPI 231

Query: 241 FTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDEN 300
           FTAGVLARSKKGGNPKTH+FVHD+   VE++ G+EFLCKENLVE    L H+VLEKMD++
Sbjct: 232 FTAGVLARSKKGGNPKTHVFVHDFSGKVEKVSGNEFLCKENLVEATHSLGHYVLEKMDDS 291

Query: 301 SFEFCRNNNASS 312
           S ++C+N+++ S
Sbjct: 292 SVQYCKNHSSGS 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313104467|gb|ADR31612.1| DUF579 protein [Populus trichocarpa] gi|313104479|gb|ADR31618.1| DUF579 protein [Populus trichocarpa] gi|313104497|gb|ADR31627.1| DUF579 protein [Populus trichocarpa]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/280 (82%), Positives = 254/280 (90%), Gaps = 4/280 (1%)

Query: 8   TKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKST 67
           TKLILLHPYIQKQG SNRLWLLAFVSFFTIAFLLTLIYTRE++ +KT +    TM T S 
Sbjct: 8   TKLILLHPYIQKQGGSNRLWLLAFVSFFTIAFLLTLIYTRETLPIKTIT---TTMATGSA 64

Query: 68  SSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLT 127
           SS + G  N PLPTTVINTLL YASRSNDS+HM+H+E+K ISDV+RKCSSPCNFLVFGLT
Sbjct: 65  SSSTFG-NNAPLPTTVINTLLHYASRSNDSFHMSHAEIKPISDVLRKCSSPCNFLVFGLT 123

Query: 128 QETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQI 187
            ET LWKALNHNGRTVFI+ENRYYAAY+EELHPEIDVFDVQYTTK++E +ELIAS KEQI
Sbjct: 124 HETPLWKALNHNGRTVFIEENRYYAAYYEELHPEIDVFDVQYTTKMKEMRELIASTKEQI 183

Query: 188 RNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA 247
           +NEC+PVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP+GPGRM+PIFT+GVLA
Sbjct: 184 KNECRPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPEGPGRMTPIFTSGVLA 243

Query: 248 RSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFND 287
           RSKK  N KTHIFVHDYYR+VER+ GDEFLC+ENLVE ND
Sbjct: 244 RSKKASNAKTHIFVHDYYRNVERIYGDEFLCRENLVESND 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313104469|gb|ADR31613.1| DUF579 protein [Populus trichocarpa] gi|313104477|gb|ADR31617.1| DUF579 protein [Populus trichocarpa] gi|313104493|gb|ADR31625.1| DUF579 protein [Populus trichocarpa] gi|313104495|gb|ADR31626.1| DUF579 protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/279 (82%), Positives = 253/279 (90%), Gaps = 4/279 (1%)

Query: 8   TKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDTKST 67
           TKLILLHPYIQKQG SNRLWLLAFVSFFTIAFLLTLIYTRE++ +KT +    TM T S 
Sbjct: 8   TKLILLHPYIQKQGGSNRLWLLAFVSFFTIAFLLTLIYTRETLPIKTIT---TTMATGSA 64

Query: 68  SSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLT 127
           SS + G  N PLPTTVINTLL YASRSNDS+HM+H+E+K ISDV+RKCSSPCNFLVFGLT
Sbjct: 65  SSSTFG-NNAPLPTTVINTLLHYASRSNDSFHMSHAEIKPISDVLRKCSSPCNFLVFGLT 123

Query: 128 QETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQI 187
            ET LWKALNHNGRTVFI+ENRYYAAY+EELHPEIDVFDVQYTTK++E +ELIAS KEQI
Sbjct: 124 HETPLWKALNHNGRTVFIEENRYYAAYYEELHPEIDVFDVQYTTKMKEMRELIASTKEQI 183

Query: 188 RNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA 247
           +NEC+PVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP+GPGRM+PIFT+GVLA
Sbjct: 184 KNECRPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPEGPGRMTPIFTSGVLA 243

Query: 248 RSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFN 286
           RSKK  N KTHIFVHDYYR+VER+ GDEFLC+ENLVE N
Sbjct: 244 RSKKASNAKTHIFVHDYYRNVERIYGDEFLCRENLVESN 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2155518	317	IRX15-L "AT5G67210" [Arabidops	0.949	0.952	0.699	3.4e-116
TAIR|locus:2074815	322	IRX15 "AT3G50220" [Arabidopsis	0.959	0.947	0.693	2.4e-115
TAIR|locus:2047158	329	AT2G15440 "AT2G15440" [Arabido	0.889	0.860	0.429	2.8e-57
TAIR|locus:2013066	295	AT1G71690 "AT1G71690" [Arabido	0.842	0.908	0.349	1.6e-38
TAIR|locus:2012728	297	GXMT1 "glucuronoxylan methyltr	0.657	0.703	0.356	8.5e-33
TAIR|locus:2012350	282	GXM3 "glucuronoxylan methyltra	0.839	0.946	0.310	4.7e-32
TAIR|locus:2140518	290	GXM2 "glucuronoxylan methyltra	0.786	0.862	0.330	8.8e-31
TAIR|locus:2010449	289	AT1G27930 "AT1G27930" [Arabido	0.855	0.941	0.272	3.5e-27
TAIR|locus:2019519	291	AT1G67330 "AT1G67330" [Arabido	0.849	0.927	0.290	1.2e-26
TAIR|locus:2117378	315	AT4G24910 "AT4G24910" [Arabido	0.814	0.822	0.311	5.9e-25

TAIR|locus:2155518 IRX15-L "AT5G67210" [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 214/306 (69%), Positives = 256/306 (83%)

Query:     1 MKNS-NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSA 59
             MK+  N+NTKLIL+HPYIQKQ ++NRLWLLAFVSFFTIAFLLTL+YT +SI   ++  ++
Sbjct:     1 MKSGGNTNTKLILVHPYIQKQTSTNRLWLLAFVSFFTIAFLLTLLYTTDSII--SSKNNS 58

Query:    60 ATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPC 119
             AT+ +   S+V+    +  LPTT IN +L YASRSNDSYHM++ E+K ISDV+R+CS PC
Sbjct:    59 ATVSSAVNSAVTTATISQ-LPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPC 117

Query:   120 NFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKEL 179
             N LVFGLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEI+VFDVQYTTK RE +EL
Sbjct:   118 NLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREAREL 177

Query:   180 IASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSP 239
             +++ KE  RNEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVIL+             MS 
Sbjct:   178 VSAVKEAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSS 237

Query:   240 IFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDE 299
             IFTA VLARSKKGGNPKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VLEKMD+
Sbjct:   238 IFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKMDK 297

Query:   300 NSFEFC 305
             NS +FC
Sbjct:   298 NSTQFC 303

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2074815 IRX15 "AT3G50220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 215/310 (69%), Positives = 250/310 (80%)

Query:     1 MKNS--NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGS 58
             MKN   N+NTKLILLHPYIQKQ ++ RLWLLAFVSFFTI FLLTL+YTR++I  K TS +
Sbjct:     1 MKNGSGNTNTKLILLHPYIQKQTSTTRLWLLAFVSFFTIVFLLTLLYTRDTIPSKNTSVA 60

Query:    59 AAT---MDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKC 115
             AA    +   ST S S+   N  LPT+ IN LL YASRSNDS+HM++ E+K ISDV+R+C
Sbjct:    61 AAVAAVVTGGSTPSASSPISNSNLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRC 120

Query:   116 SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRE 175
             + PCN LVFGLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEIDVFDVQYTTK  E
Sbjct:   121 APPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHE 180

Query:   176 TKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXX 235
               EL+ +AKE   NEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVI +            
Sbjct:   181 AGELVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPG 240

Query:   236 XMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLE 295
              MS IFTA VLARSKKGG PKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VL+
Sbjct:   241 RMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLD 300

Query:   296 KMDENSFEFC 305
             KMD+NS +FC
Sbjct:   301 KMDKNSTKFC 310

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2047158 AT2G15440 "AT2G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 133/310 (42%), Positives = 187/310 (60%)

Query:     1 MKNSNSNTKLILLH---PYIQKQGTS------NRLWLLAFVSFFTIAFLLTLIYTRESIS 51
             MK SN+NT LIL H   P   K  ++      +R   + F+SFFT+ F  +L     S S
Sbjct:     1 MK-SNTNTNLILFHHHSPLTSKSPSAVAAANHHRFLFIFFLSFFTLLFSFSLF----SSS 55

Query:    52 LKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDV 111
             + +T+ S +   + S+SS         LP  V+  LL Y S S  +  M+  EL  IS++
Sbjct:    56 IHSTTSSHSLSSSPSSSS---------LPPPVLAALLHYTSSSPPNTSMSFLELSTISNI 106

Query:   112 IRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTT 171
             I      CN L+FGLT E+LLW+++N  GRTVF+DE+ Y  + FE+ +P ++ ++V Y+T
Sbjct:   107 IHSHGPACNLLIFGLTHESLLWRSINFQGRTVFVDESPYSVSKFEQSNPGVEAYEVVYST 166

Query:   172 KIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIXXXXXXXX 231
             K+ + K+L+   K   R EC+PVQNLLFS+CKLGINDLPN VYE+DWDVILI        
Sbjct:   167 KVSQAKKLLGYYKT--RPECRPVQNLLFSDCKLGINDLPNFVYEIDWDVILIDGPRGYAS 224

Query:   232 XXXXXMSPIFTAGVLARSKKGGNP--KTHIFVHDYYRHVERMCGDEFLCKENLVEFNDML 289
                  M+PIFT+ VLA+SK  G    KT + VH++ R +ER+  +EFLC+ENL+E    L
Sbjct:   225 DSPGRMAPIFTSAVLAKSKDFGTKTKKTDVLVHEFGRKIERVYSEEFLCEENLIEVVGDL 284

Query:   290 AHFVLEKMDE 299
              HFV+   +E
Sbjct:   285 GHFVVAAAEE 294

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013066 AT1G71690 "AT1G71690" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 96/275 (34%), Positives = 147/275 (53%)

Query:    23 SNRLWLLAFVSFFTIA-FLLTLIYTRESISLKTTSGSAATMDTKSTSS-VSAGFGNPPLP 80
             + RL L +FVS   +  F +T      S S      +   + T ST S + +      +P
Sbjct:    10 TTRLILSSFVSLVVLTLFFITRTGFSPSSSFHQPLNNTLRISTSSTGSKLQSPRSCNKIP 69

Query:    81 TTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNG 140
              ++ + L+ YAS SN +   T SE+      + K  SPCNFLVFGL  ++L+W  LNH G
Sbjct:    70 PSLADALVHYAS-SNVTPQQTLSEISVTKKELEK-KSPCNFLVFGLGHDSLMWATLNHGG 127

Query:   141 RTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQ-NLLF 199
             RT+F+DE+  +     E  P ++ + V+Y TK+R+ + L+A+ K+  R EC+ V  +L  
Sbjct:   128 RTIFLDEDESWIHQIAEKFPSLESYHVRYKTKVRDAEALMAATKD--REECRRVSTDLRV 185

Query:   200 SECKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSKKGGNPKTHI 259
             S C+L +  LP  VYE +WD+I++             MS I+TAG++AR +K     T +
Sbjct:   186 STCELALKGLPEVVYETEWDLIMVDAPTGFHEEAPGRMSAIYTAGMIARRRKDEEETTAV 245

Query:   260 FVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVL 294
             FVHD  R VE     EFLC++ + +    L HF +
Sbjct:   246 FVHDVDRKVEDEFSMEFLCRDYMTKQEGRLRHFTV 280

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012728 GXMT1 "glucuronoxylan methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 77/216 (35%), Positives = 123/216 (56%)

Query:    79 LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH 138
             +P ++ + L+ Y + SN +   T  E+     V+ K  SPCNFLVFGL  ++L+W +LNH
Sbjct:    69 MPLSLSDALVHYVT-SNVTPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNH 126

Query:   139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL 198
              GRT+FI+E++ + A   +  P ++ + V Y TK++++ +L+   + +   EC+ V +  
Sbjct:   127 GGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSE---ECRSVSDPR 183

Query:   199 FSECKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSKKGGNPKTH 258
              S+C L + D P   YE  WD+I++             MS I+TAG+LAR+++ G  +T 
Sbjct:   184 NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNREDG--ETD 241

Query:   259 IFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVL 294
             +FVHD  R VE      FLCK  + E N  L HF +
Sbjct:   242 VFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTI 277

GO:0005739 "mitochondrion" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005976 "polysaccharide metabolic process" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2012350 GXM3 "glucuronoxylan methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 87/280 (31%), Positives = 145/280 (51%)

Query:    23 SNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAAT-MDTKSTSSVSAGFGNPPLPT 81
             +N+   L  +  F +A L+ +   R ++   T+S    T  +T+ST    +G  N  LP 
Sbjct:     5 ANQNHKLKVLLVFLLATLILIFIVRSTL---TSSQEHQTPQETRSTRC--SGACNK-LPR 58

Query:    82 TVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGR 141
             ++   L+ Y S S  +   T  E+   S V+ K  SPCNFLVFGL  ++L+W +LN+ GR
Sbjct:    59 SLAQALIHY-STSVITPQQTLKEIAVSSRVLGK-KSPCNFLVFGLGHDSLMWSSLNYGGR 116

Query:   142 TVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSE 201
             TVF++E+  +    +   P ++ + V Y +K+ +   LI   K     EC  + +  +S 
Sbjct:   117 TVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKGP---ECTAIGDPRYSM 173

Query:   202 CKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSKKGGNPKTHIFV 261
             C+L +  LP  +YE  WD+I++             M+ I+TAG++AR++K G  +T +FV
Sbjct:   174 CQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGG-ETDVFV 232

Query:   262 HDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENS 301
             HD  R +E      FLC+  + +    L HF++    + S
Sbjct:   233 HDVNREIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGS 272

GO:0005576 "extracellular region" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2140518 GXM2 "glucuronoxylan methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 85/257 (33%), Positives = 130/257 (50%)

Query:    36 TIAFLLTLIYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSN 95
             +I  L  L   R S S  +T+        KS    S       LPT++ + L+ Y + S 
Sbjct:    19 SILVLFILFLKRASFSSNSTATIRDEYHQKSKCP-STPQQCTKLPTSLSDALVHYVT-SE 76

Query:    96 DSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYF 155
              +   T  E+     V+ K  SPCNFLVFGL  ++L+W +LNH GRT+F++E+  +    
Sbjct:    77 ITPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETV 135

Query:   156 EELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYE 215
              +  P ++ + V Y TK++++ +L+   + +   +CK V +   S+C L +   P  VYE
Sbjct:   136 TKKFPNLESYHVVYDTKVKDSNKLMELKRTE---DCKAVSDPRDSKCALSLKGFPADVYE 192

Query:   216 VDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDE 275
               WDVI++             MS I+TAG+LAR++  G  +T +FVHD  R VE      
Sbjct:   193 TQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGG-ETDVFVHDINRPVEDEFSVA 251

Query:   276 FLCKENLVEFNDMLAHF 292
             FLC   + E    L HF
Sbjct:   252 FLCGGYMKEQQGRLRHF 268

GO:0005576 "extracellular region" evidence=ISM

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2010449 AT1G27930 "AT1G27930" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 80/294 (27%), Positives = 151/294 (51%)

Query:    23 SNRLWLLAFVSFFTIAFLL--TLIYTRESISLKTTSGSAATMDTKSTS-SVSAGFGNPPL 79
             S + W++  V    +A L+   L++T    +   T    +T   KS + + +A +   P+
Sbjct:     7 SEKRWIITGV---LLAGLVGGALLFTSFIRAADETLFLCSTASAKSRAVAAAADYEATPI 63

Query:    80 PTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN 139
                 +  ++ YA+ SN       +E+    ++++K + P NFLVFGL +++L+W +LN  
Sbjct:    64 Q---LQAIVHYAT-SNVVPQQNLAEISISFNILKKLA-PANFLVFGLGRDSLMWASLNPR 118

Query:   140 GRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLF 199
             G+T+F++E+  +     +  P +    V+Y T++++   L+ S K + +  C P ++ L 
Sbjct:   119 GKTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPK--CFPAKSYLR 176

Query:   200 S--ECKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSKKGGNPKT 257
                +CKL +  LP+  Y+ +WD++++             M+ IF+A V+AR++K     T
Sbjct:   177 GNEKCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGV-T 235

Query:   258 HIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEK------MDENSFEFC 305
             H+F+HD  R VE+   +EFLC++  V     L HF +        +D   + FC
Sbjct:   236 HVFLHDVNRRVEKTFAEEFLCRKYRVNAAGRLWHFAIPPAAANATIDSGDYRFC 289

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2019519 AT1G67330 "AT1G67330" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 87/299 (29%), Positives = 150/299 (50%)

Query:    19 KQGTSNRLWLLAFVSFFTI--AFLLTLIY--TRESISLKTTSGSAATMDTKSTSSVSAGF 74
             KQ    R W LA      I  A L+T     T  ++SL +T+ + A    K T++     
Sbjct:    10 KQTLLERPWFLAVALAGLIGGAMLITSFIRATDNTLSLCSTAKNTAASIAKYTAT----- 64

Query:    75 GNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWK 134
                P+    + +++ YA+ S+     +  E+    +V+++   PCNFLVFGL +++L+W 
Sbjct:    65 ---PIQ---LQSIVHYAT-SHTVPQQSFEEISISLNVLKE-RLPCNFLVFGLGRDSLMWA 116

Query:   135 ALNHNGRTVFIDEN-RYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKP 193
             +LN  G TVF++E+  +  A  ++  P +    VQY T + E   L+++ K +    C P
Sbjct:   117 SLNPGGTTVFLEEDPEWIEAVLKDA-PSLRAHHVQYRTHLSEAGRLLSTYKNEPM--CLP 173

Query:   194 VQN--LLFSE-CKLGINDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSK 250
              +   + ++E C L +  LP+  Y+ +WD+I++             M+ IF++ ++AR++
Sbjct:   174 AKAFPIRYNEKCPLALTSLPDEFYDTEWDLIMVDAPKGYFPEAPGRMAAIFSSAIMARNR 233

Query:   251 KGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKM----DENSFEFC 305
             KG    TH+F+HD  R VE    +EFLC++  V     L HF +       D+    FC
Sbjct:   234 KGDGT-THVFLHDVNRKVENAFANEFLCEKYKVNSVGRLWHFEIPNAANMTDQPGDRFC 291

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2117378 AT4G24910 "AT4G24910" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 87/279 (31%), Positives = 129/279 (46%)

Query:    35 FTIAFLLTL-IYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASR 93
             FT+  L+ L I+   S+S+      +    +KS SS S  F   P  ++          R
Sbjct:    41 FTVRKLIPLLIFVLSSLSVLRLLRISYKSSSKSQSSSSTTFRLSPADSS-------QQLR 93

Query:    94 SNDS-YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFI-DENRYY 151
             +N+    +   ELK +SD + +  SPCN LVFG   + L+  ++N  G TV + DE    
Sbjct:    94 ANEGPTALMEKELKLLSDTVTR-RSPCNILVFGFAPQYLMLSSINTRGITVILEDEPAKI 152

Query:   152 AAYFEELHPE-IDVFDVQY-TTKIRETKELIASAKEQIRNECKPVQNLLF---SECKLGI 206
                  E++P    ++ ++Y   ++R    L+  A+      C P  N      S+CKL +
Sbjct:   153 MIPKAEVNPNNTRIYSLKYHQMEVRNAYNLLQHARAN--PACAPNMNNQHQGSSDCKLEL 210

Query:   207 NDLPNHVYEVDWDVILIXXXXXXXXXXXXXMSPIFTAGVLARSKKGGNPKTHIFVHDYYR 266
              DLP  V+   WDVI++             M  I+TA VLAR K   N  T +FVHD +R
Sbjct:   211 RDLPQQVHNTKWDVIVVDGPRGDDLETPGRMGSIYTAAVLAR-KGSSNSTTDVFVHDVHR 269

Query:   267 HVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFC 305
               E+    EFLC+ENLV        F + K   N+  FC
Sbjct:   270 TAEKWLSWEFLCQENLVSAKGTFWKFRI-KRQSNASRFC 307


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      318       292   0.00090  115 3  11 22  0.49    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.04u 0.23s 27.27t   Elapsed:  00:00:01
  Total cpu time:  27.04u 0.23s 27.27t   Elapsed:  00:00:01
  Start:  Fri May 10 21:26:44 2013   End:  Fri May 10 21:26:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SNE5	IRX15_ARATH	No assigned EC number	0.7080	0.9968	0.9844	no	no
Q9FH92	IX15L_ARATH	No assigned EC number	0.7197	0.9779	0.9810	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050506 hypothetical protein (311 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
TIGR01627	225	TIGR01627, A_thal_3515, uncharacterized plant-spec	1e-110
pfam04669	134	pfam04669, Polysacc_synt_4, Polysaccharide biosynt	4e-33

>gnl|CDD|130688 TIGR01627, A_thal_3515, uncharacterized plant-specific domain TIGR01627

 Score =  320 bits (821), Expect = e-110
 Identities = 103/228 (45%), Positives = 136/228 (59%), Gaps = 6/228 (2%)

Query: 79  LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH 138
            P +  + L  Y + SN    +   ELK +SDV+ + S PCN LVFGL  + L+W +LNH
Sbjct: 3   FPLSPADALQHYRA-SNGPTALMEKELKLLSDVLTRRS-PCNILVFGLAHQYLMWSSLNH 60

Query: 139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQN-L 197
            GRTVFI+E +   A  E   P   ++ V+Y TK+R    L+  A+     EC+PV N  
Sbjct: 61  RGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLLQHARAN--PECRPVMNHQ 118

Query: 198 LFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKT 257
             S+CKL + DLP  VY   WDVI++DGPRGD  + PGRMS I+TA VLAR    G+  T
Sbjct: 119 GSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGST-T 177

Query: 258 HIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFC 305
            +FVHD +R VE+    EFLC+ENLVE N  L HF +++    S  FC
Sbjct: 178 DVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNASRAFC 225

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). Length = 225

>gnl|CDD|218202 pfam04669, Polysacc_synt_4, Polysaccharide biosynthesis

 Score =  118 bits (298), Expect = 4e-33
 Identities = 43/183 (23%), Positives = 61/183 (33%), Gaps = 62/183 (33%)

Query: 104 ELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEID 163
           E++     +      CN LVFGL   +L   ALN                 F +  PE++
Sbjct: 2   EMQWAVKAVEHAEPYCNLLVFGLGPSSLRLTALNDG-----------IYEKFRKAFPELE 50

Query: 164 VFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILI 223
            + V Y TK+ +  EL ++A                              Y+  W  I +
Sbjct: 51  AYHVAYRTKVLDADELKSAA------------------------------YKEKW-RIFV 79

Query: 224 DGPRGDGPDGPGRMSPIFTAGVLARSKKGG--NPKTHIFVHDYYRHVERMCGDEFLCKEN 281
           D P G   D        + AG LARS       P+  +FVH            +FLC E 
Sbjct: 80  DAPEGYVED--------YNAGTLARSDASKGYTPENTVFVHRV----------QFLCIEI 121

Query: 282 LVE 284
              
Sbjct: 122 ARN 124

This family of proteins plays a role in xylan biosynthesis in plant cell walls. Its precise role in xylan biosynthesis is unknown. Its function in other organisms is unknown. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	100.0
PF04669	190	Polysacc_synt_4: Polysaccharide biosynthesis; Inte	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.42
PLN02823	336	spermine synthase	94.63
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.84
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	93.66
PLN02476	278	O-methyltransferase	93.43
PRK01581	374	speE spermidine synthase; Validated	92.74
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	92.64
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	92.27
PRK00811	283	spermidine synthase; Provisional	90.94
PLN02366	308	spermidine synthase	90.39
PRK04457	262	spermidine synthase; Provisional	88.03
PLN02589	247	caffeoyl-CoA O-methyltransferase	87.1
PRK03612	521	spermidine synthase; Provisional	86.49

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=100.00  E-value=5.3e-121  Score=828.33  Aligned_cols=224  Identities=46%  Similarity=0.817  Sum_probs=217.6

Q ss_pred             CCCCHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhh
Q 021017           77 PPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFE  156 (318)
Q Consensus        77 ~~lp~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~  156 (318)
                      +++|++|++||||||| ||+|||||.+||+++++||+| ||||||||||||||||||++|||||||||||||++||++++
T Consensus         1 t~~p~~~a~AlvhYat-sn~t~q~s~~Ei~~~~~VL~~-raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~   78 (225)
T TIGR01627         1 TTFPLSPADALQHYRA-SNGPTALMEKELKLLSDVLTR-RSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAE   78 (225)
T ss_pred             CCCchhHHHHHHHHHh-cCCCcccCHHHHHHHHHHHHh-cCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHh
Confidence            4799999999999998 999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             hhCCCceeEEEEeecccccHHHHHHHHhhhcCCCCccccccc-ccccccccCCCCcccccccccEEEEcCCCCCCCCCCC
Q 021017          157 ELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL-FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPG  235 (318)
Q Consensus       157 ~~~p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~-~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPG  235 (318)
                      ++||+||+|+|+|+|+++||++||+.+|+  +++|+|+|+.+ +|+|||||||||+||||++|||||||||+||+||+||
T Consensus        79 ~~~p~leay~V~Y~t~~~~a~~LL~~~~~--~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPG  156 (225)
T TIGR01627        79 VNPPNTRIYSVKYHTKVRNAYNLLQHARA--NPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPG  156 (225)
T ss_pred             hcCCcceEEEEEeehhhhhHHHHHHHhcc--CCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCc
Confidence            99999999999999999999999999995  69999999765 8999999999999999999999999999999999999


Q ss_pred             CcchhhhHHHHhhhcCCCCCcceEEEecCCchHHHhhhhhhccccccccccCceeeEEeecCCCCccccc
Q 021017          236 RMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFC  305 (318)
Q Consensus       236 RM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~grL~HF~I~~~~~~~~~FC  305 (318)
                      ||+||||||||||+|++| ++||||||||||+|||+||+||||++|||+++||||||+||++..++++||
T Consensus       157 RM~aIyTAav~AR~r~~g-~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~~~FC  225 (225)
T TIGR01627       157 RMSSIYTAAVLARKGSSG-STTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNASRAFC  225 (225)
T ss_pred             chhhHHHHHHHHHhccCC-CCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCCCCCC
Confidence            999999999999999977 579999999999999999999999999999999999999998888888999

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins

Probab=100.00  E-value=8.7e-87  Score=594.35  Aligned_cols=186  Identities=48%  Similarity=0.910  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHhcCCC-ccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHH
Q 021017          103 SELKRISDVIRKCSSP-CNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIA  181 (318)
Q Consensus       103 ~Ei~~~~~vL~~~raP-CNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~  181 (318)
                      .||+.+++||++ ++| |||||||||||||||+++||||||||||||++|+++++++||++++|+|+|+|++.++++||+
T Consensus         1 ~E~~~a~~~l~~-~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~   79 (190)
T PF04669_consen    1 IEIAWAAKVLQH-REPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLS   79 (190)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSS
T ss_pred             CcHHHHHHHHHH-hCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhC
Confidence            599999999999 677 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhcCCCCCc-ceEE
Q 021017          182 SAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPK-THIF  260 (318)
Q Consensus       182 ~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~g~~~-TdVf  260 (318)
                      .+|+   ++|+|+|++++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+|++|..+ ||||
T Consensus        80 ~~~~---~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~Vf  156 (190)
T PF04669_consen   80 KARS---PECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVF  156 (190)
T ss_dssp             HH------------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEE
T ss_pred             cccc---ccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEE
Confidence            9995   89999999999999999999999999999999999999999999999999999999999999876333 6999


Q ss_pred             EecCCchHHHhhhhhhccccccccccCc--eeeE
Q 021017          261 VHDYYRHVERMCGDEFLCKENLVEFNDM--LAHF  292 (318)
Q Consensus       261 VHDvdR~VE~~~s~eFLC~~nlv~~~gr--L~HF  292 (318)
                      ||||||+|||+||+||||+||+++++|+  ||||
T Consensus       157 Vhdv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF  190 (190)
T PF04669_consen  157 VHDVDRPVEKWFSEEFLCIEILRNREGRNDLWHF  190 (190)
T ss_dssp             E-HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred             EEcccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence            9999999999999999999999999999  9999

; PDB: 2JYN_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.42  E-value=0.14  Score=49.04  Aligned_cols=156  Identities=20%  Similarity=0.296  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce--eEEEEeecccccHHH
Q 021017          103 SELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID--VFDVQYTTKIRETKE  178 (318)
Q Consensus       103 ~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le--ay~V~Y~T~~~ea~~  178 (318)
                      -|.-+-...+.+ ..|-+.||-|+|--+.++..+.|.  =|-+..|=|+..|+-.++-.|...  ++|=+-.-.+.|+.+
T Consensus        63 hEml~h~~~~ah-~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~  141 (282)
T COG0421          63 HEMLAHVPLLAH-PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE  141 (282)
T ss_pred             HHHHHhchhhhC-CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence            344455556665 667799999999999999999998  589999999999999998888775  554444455577777


Q ss_pred             HHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHh---hh-cCCCC
Q 021017          179 LIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA---RS-KKGGN  254 (318)
Q Consensus       179 LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmA---R~-r~~g~  254 (318)
                      .|+...                               -++|||++|.--   |+.||  .+.||--..-   |. +.+|-
T Consensus       142 ~v~~~~-------------------------------~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi  185 (282)
T COG0421         142 FLRDCE-------------------------------EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGI  185 (282)
T ss_pred             HHHhCC-------------------------------CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcE
Confidence            775433                               169999999766   44444  4566665443   33 22332


Q ss_pred             Ccce---EEEe-----cCCchHHHhhhhhhccccccccccCceeeEEee
Q 021017          255 PKTH---IFVH-----DYYRHVERMCGDEFLCKENLVEFNDMLAHFVLE  295 (318)
Q Consensus       255 ~~Td---VfVH-----DvdR~VE~~~s~eFLC~~nlv~~~grL~HF~I~  295 (318)
                      -.+-   -|.|     +..|.++++|+.-=.+.-.+-.-.+..|-|.+.
T Consensus       186 ~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~  234 (282)
T COG0421         186 FVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVA  234 (282)
T ss_pred             EEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEe
Confidence            1111   4444     688999999998888888877778889999994

>PLN02823 spermine synthase

Probab=94.63  E-value=0.3  Score=47.59  Aligned_cols=98  Identities=16%  Similarity=0.270  Sum_probs=66.3

Q ss_pred             CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce-eE-EEEeecccccHHHHHHHHhhhcCCCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID-VF-DVQYTTKIRETKELIASAKEQIRNEC  191 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le-ay-~V~Y~T~~~ea~~LL~~~r~~~~~~C  191 (318)
                      ..|.+.||.|+|--++....+.|.  .+-+.+|=|+.-++-+++-+|... ++ +=+-+-.+.|+.+.|+..        
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--------  173 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--------  173 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--------
Confidence            579999999999888887777764  467999999999999988776421 11 122233446666666311        


Q ss_pred             cccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHh
Q 021017          192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA  247 (318)
Q Consensus       192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmA  247 (318)
                                             +-+||||++|.+.   |...|-....||.-.+.
T Consensus       174 -----------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~  203 (336)
T PLN02823        174 -----------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE  203 (336)
T ss_pred             -----------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence                                   1159999999875   43333335688866544

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.84  E-value=0.61  Score=42.58  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=75.0

Q ss_pred             CHHHHHHHhhhhccCC--CCcCC--CHHHHHHHHHHHHhcCCCccEEEecC--CchhhhHhh-hccCCcEEEecCChhHH
Q 021017           80 PTTVINTLLLYASRSN--DSYHM--THSELKRISDVIRKCSSPCNFLVFGL--TQETLLWKA-LNHNGRTVFIDENRYYA  152 (318)
Q Consensus        80 p~~v~~ALvhYAt~sn--~tpqq--t~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~a-LN~gGrTvFLeEd~~~i  152 (318)
                      ..++++.|.+||- .+  ..++|  +..+-+.+ ..|.+...|-++|-.|-  |..++.++. +..+|+-+.+|-|++++
T Consensus        29 ~~~~l~~~~~~a~-~~~~~~~~~~v~~~~g~~L-~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~  106 (234)
T PLN02781         29 EHELLKELREATV-QKYGNLSEMEVPVDEGLFL-SMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY  106 (234)
T ss_pred             CCHHHHHHHHHHH-hccccCcccccCHHHHHHH-HHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence            3467888888885 34  23443  55444444 44445578999999985  554454544 34579999999999999


Q ss_pred             HHhhhhCC--CceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCC
Q 021017          153 AYFEELHP--EIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRG  228 (318)
Q Consensus       153 ~~~~~~~p--~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~G  228 (318)
                      +.+++..-  +++ ..|  +-...+|.+.|....++ .+                         +-.+|+|.+|++++
T Consensus       107 ~~A~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~-~~-------------------------~~~fD~VfiDa~k~  155 (234)
T PLN02781        107 EVGLEFIKKAGVD-HKI--NFIQSDALSALDQLLNN-DP-------------------------KPEFDFAFVDADKP  155 (234)
T ss_pred             HHHHHHHHHcCCC-CcE--EEEEccHHHHHHHHHhC-CC-------------------------CCCCCEEEECCCHH
Confidence            88876532  332 223  33456777777554321 00                         12689999999873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=93.66  E-value=0.58  Score=42.52  Aligned_cols=146  Identities=16%  Similarity=0.238  Sum_probs=91.9

Q ss_pred             CHHHHHHHhhhhccCCCCcCCCH-HHHHHHHHHHHhcCCCccEEEecC--CchhhhHh-hhccCCcEEEecCChhHHHHh
Q 021017           80 PTTVINTLLLYASRSNDSYHMTH-SELKRISDVIRKCSSPCNFLVFGL--TQETLLWK-ALNHNGRTVFIDENRYYAAYF  155 (318)
Q Consensus        80 p~~v~~ALvhYAt~sn~tpqqt~-~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTvFLeEd~~~i~~~  155 (318)
                      .+++++.|-+++......++|.. .|...+...|.+...|-|.|-+|-  |.-++.|+ ++-.+|+-+=+|-|+++++.+
T Consensus         7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A   86 (205)
T PF01596_consen    7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA   86 (205)
T ss_dssp             STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence            56788999999973333555533 333444445444577999999975  77777776 456689999999999998877


Q ss_pred             hhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCC
Q 021017          156 EELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDG  233 (318)
Q Consensus       156 ~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~pea  233 (318)
                      ++..  -+++ .+|++  ...+|.+.|.....+ .                     +    +-.+|+|.|||.++-++  
T Consensus        87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~-~---------------------~----~~~fD~VFiDa~K~~y~--  135 (205)
T PF01596_consen   87 RENFRKAGLD-DRIEV--IEGDALEVLPELAND-G---------------------E----EGQFDFVFIDADKRNYL--  135 (205)
T ss_dssp             HHHHHHTTGG-GGEEE--EES-HHHHHHHHHHT-T---------------------T----TTSEEEEEEESTGGGHH--
T ss_pred             HHHHHhcCCC-CcEEE--EEeccHhhHHHHHhc-c---------------------C----CCceeEEEEcccccchh--
Confidence            7532  2332 23333  347888888765531 0                     0    34699999999886544  


Q ss_pred             CCCcchhhhHHHHhhhcCCCCCcceEEEecCCc
Q 021017          234 PGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYR  266 (318)
Q Consensus       234 PGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR  266 (318)
                           ..|-.. +-.-|++|    =+++.++-.
T Consensus       136 -----~y~~~~-~~ll~~gg----vii~DN~l~  158 (205)
T PF01596_consen  136 -----EYFEKA-LPLLRPGG----VIIADNVLW  158 (205)
T ss_dssp             -----HHHHHH-HHHEEEEE----EEEEETTTG
T ss_pred             -----hHHHHH-hhhccCCe----EEEEccccc
Confidence                 344433 34444443    467777654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=93.43  E-value=1.1  Score=42.94  Aligned_cols=120  Identities=12%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             CHHHHHHHhhhhccCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEecCCch-hhhHhhh--ccCCcEEEecCChhHHHH
Q 021017           80 PTTVINTLLLYASRSNDSY--HMTHSELKRISDVIRKCSSPCNFLVFGLTQE-TLLWKAL--NHNGRTVFIDENRYYAAY  154 (318)
Q Consensus        80 p~~v~~ALvhYAt~sn~tp--qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d-sllW~aL--N~gGrTvFLeEd~~~i~~  154 (318)
                      ++++++.|.+||. .+.-+  +.+.++-+.+..+++ ...|=++|=.|-+-. |.+|.+.  ..+|+-+=+|-|+++++.
T Consensus        81 ~~~~L~~l~e~a~-~~~~~~~~v~~~~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~  158 (278)
T PLN02476         81 EPKILRQLREETS-KMRGSQMQVSPDQAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV  158 (278)
T ss_pred             CCHHHHHHHHHHH-hccCCccccCHHHHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence            4456666777775 34223  345555555555555 478999999976333 3455544  568999999999999887


Q ss_pred             hhhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCC
Q 021017          155 FEELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDG  230 (318)
Q Consensus       155 ~~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~  230 (318)
                      +++..  -+++ ..|..  ...+|.+.|....++ .                         .+-.+|+|.|||+++-+
T Consensus       159 Ar~n~~~aGl~-~~I~l--i~GdA~e~L~~l~~~-~-------------------------~~~~FD~VFIDa~K~~Y  207 (278)
T PLN02476        159 AKRYYELAGVS-HKVNV--KHGLAAESLKSMIQN-G-------------------------EGSSYDFAFVDADKRMY  207 (278)
T ss_pred             HHHHHHHcCCC-CcEEE--EEcCHHHHHHHHHhc-c-------------------------cCCCCCEEEECCCHHHH
Confidence            77543  3443 33433  346777777654321 0                         01348999999998533

>PRK01581 speE spermidine synthase; Validated

Probab=92.74  E-value=1.3  Score=44.53  Aligned_cols=142  Identities=20%  Similarity=0.231  Sum_probs=85.9

Q ss_pred             cCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce-----eE-EEEeecccccHHHHHHHHhhh
Q 021017          115 CSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID-----VF-DVQYTTKIRETKELIASAKEQ  186 (318)
Q Consensus       115 ~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le-----ay-~V~Y~T~~~ea~~LL~~~r~~  186 (318)
                      ...|-+.||.|.|--..+=..+.|.  ++-+-+|=|+.-++-+++ +|.+.     ++ +=+-+-.+.|+.+.|...   
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---  223 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---  223 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence            3678999999999777766666664  688889999999988885 54442     11 112223345565555311   


Q ss_pred             cCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhc---CCCCCcceEEE-e
Q 021017          187 IRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSK---KGGNPKTHIFV-H  262 (318)
Q Consensus       187 ~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~g~~~TdVfV-H  262 (318)
                                             +     -++|||++|.|....+    .....||...+..-+   ++| |   ||| .
T Consensus       224 -----------------------~-----~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPg-G---V~V~Q  267 (374)
T PRK01581        224 -----------------------S-----SLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTED-G---AFVCQ  267 (374)
T ss_pred             -----------------------C-----CCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCC-c---EEEEe
Confidence                                   0     1699999998753322    247788877655433   233 3   232 1


Q ss_pred             --------cCCchHHHhhhhhhccccccc---cccCceeeEEeec
Q 021017          263 --------DYYRHVERMCGDEFLCKENLV---EFNDMLAHFVLEK  296 (318)
Q Consensus       263 --------DvdR~VE~~~s~eFLC~~nlv---~~~grL~HF~I~~  296 (318)
                              ++-..+-+.+...|+--....   ..-|.+|=|.|.+
T Consensus       268 s~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as  312 (374)
T PRK01581        268 SNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAA  312 (374)
T ss_pred             cCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEe
Confidence                    111234566667777544332   2346679999953

>TIGR00417 speE spermidine synthase

Probab=92.64  E-value=0.92  Score=41.93  Aligned_cols=47  Identities=19%  Similarity=0.367  Sum_probs=38.9

Q ss_pred             CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCc
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEI  162 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~l  162 (318)
                      +.|-+.|+.|.|--.+....+.++  .+.+.+|-|+.-++.+++..|.+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~  119 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL  119 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence            568899999999988877777775  57899999999999888876544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=92.27  E-value=0.32  Score=44.95  Aligned_cols=105  Identities=18%  Similarity=0.317  Sum_probs=66.6

Q ss_pred             HHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCceeE--EEEeecccccHHHHHHHHh
Q 021017          109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEIDVF--DVQYTTKIRETKELIASAK  184 (318)
Q Consensus       109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~leay--~V~Y~T~~~ea~~LL~~~r  184 (318)
                      .-++.. ..|-|.||.|+|--+..-..+.|.  .+...+|-||.-++-.++-+|....-  +=+.+-...|+.+.|+...
T Consensus        69 ~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~  147 (246)
T PF01564_consen   69 PPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ  147 (246)
T ss_dssp             HHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred             hHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence            334443 579999999999999998888886  57889999999988777655433211  1112223456666555433


Q ss_pred             hhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhh
Q 021017          185 EQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARS  249 (318)
Q Consensus       185 ~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~  249 (318)
                                                .+    ++|||++|.+.   |..|+-.  .||.-.+...
T Consensus       148 --------------------------~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~  177 (246)
T PF01564_consen  148 --------------------------EE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLC  177 (246)
T ss_dssp             --------------------------ST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHH
T ss_pred             --------------------------CC----cccEEEEeCCC---CCCCccc--ccCHHHHHHH
Confidence                                      22    79999999988   4444433  7776655443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00811 spermidine synthase; Provisional

Probab=90.94  E-value=1.5  Score=41.15  Aligned_cols=47  Identities=19%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCc
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEI  162 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~l  162 (318)
                      ..|-+.||.|.|--...-..+.+.  .+-+.+|=|+.-++.+++..|.+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~  123 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI  123 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence            579999999999998888888873  47899999999999988876644

>PLN02366 spermidine synthase

Probab=90.39  E-value=2.6  Score=40.63  Aligned_cols=145  Identities=19%  Similarity=0.337  Sum_probs=81.9

Q ss_pred             CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce-eE-EEEeecccccHHHHHHHHhhhcCCCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID-VF-DVQYTTKIRETKELIASAKEQIRNEC  191 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le-ay-~V~Y~T~~~ea~~LL~~~r~~~~~~C  191 (318)
                      ..|-+.||.|.|.-.+.-..+.|.  .+-+.+|=|+.-|+-.++.+|.+. .+ +=+.+-...+|.+.|+          
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~----------  159 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK----------  159 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh----------
Confidence            678999999999888776666664  467788999999998888776531 00 1112222344444443          


Q ss_pred             cccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhc---CCCCCcc-----eEEE-e
Q 021017          192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSK---KGGNPKT-----HIFV-H  262 (318)
Q Consensus       192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~g~~~T-----dVfV-H  262 (318)
                                      +.|    +-++|||++|++....|  +   ...||...+..-+   ++| |.-     ..+. .
T Consensus       160 ----------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pg-Gvlv~q~~s~~~~~  213 (308)
T PLN02366        160 ----------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPG-GVVCTQAESMWLHM  213 (308)
T ss_pred             ----------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCC-cEEEECcCCcccch
Confidence                            222    12599999999886544  1   3356655444432   232 221     1122 2


Q ss_pred             cCCchHHHhhhhhhc--ccccc--ccc-cCceeeEEeec
Q 021017          263 DYYRHVERMCGDEFL--CKENL--VEF-NDMLAHFVLEK  296 (318)
Q Consensus       263 DvdR~VE~~~s~eFL--C~~nl--v~~-~grL~HF~I~~  296 (318)
                      +.-+.+-+.+...|-  ..-|.  |-. .|-.|-|.+.+
T Consensus       214 ~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as  252 (308)
T PLN02366        214 DLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCS  252 (308)
T ss_pred             HHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEE
Confidence            233455566667771  12111  112 34579999953

>PRK04457 spermidine synthase; Provisional

Probab=88.03  E-value=6.9  Score=36.43  Aligned_cols=44  Identities=18%  Similarity=0.153  Sum_probs=36.8

Q ss_pred             CCCccEEEecCCchhhh--HhhhccCCcEEEecCChhHHHHhhhhC
Q 021017          116 SSPCNFLVFGLTQETLL--WKALNHNGRTVFIDENRYYAAYFEELH  159 (318)
Q Consensus       116 raPCNfLVFGLg~dsll--W~aLN~gGrTvFLeEd~~~i~~~~~~~  159 (318)
                      ..|-+.|+.|+|.-++.  |....++++-+-+|-||.-++.+++.+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f  110 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF  110 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence            45889999999888764  666677889999999999999888764

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=87.10  E-value=3.2  Score=39.00  Aligned_cols=121  Identities=14%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             HHHHHHHhhhhccCCCCcCC--CHHHHHHHHHHHHhcCCCccEEEecC--CchhhhHh-hhccCCcEEEecCChhHHHHh
Q 021017           81 TTVINTLLLYASRSNDSYHM--THSELKRISDVIRKCSSPCNFLVFGL--TQETLLWK-ALNHNGRTVFIDENRYYAAYF  155 (318)
Q Consensus        81 ~~v~~ALvhYAt~sn~tpqq--t~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTvFLeEd~~~i~~~  155 (318)
                      +++++.|.++|. .+..|.|  +.++-+.+..+++. ..|-+.|-+|-  |.-++.++ ++..+|+-+=+|=|+++++.+
T Consensus        43 ~~~L~~l~~~a~-~~~~~~~~~~~~~g~lL~~l~~~-~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~A  120 (247)
T PLN02589         43 PESMKELRELTA-KHPWNIMTTSADEGQFLNMLLKL-INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELG  120 (247)
T ss_pred             CHHHHHHHHHHH-hcCCCCCccCHHHHHHHHHHHHH-hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH
Confidence            456788899986 4544533  56666666666664 77999999985  55555333 345689999999999998877


Q ss_pred             hhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCC
Q 021017          156 EELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP  231 (318)
Q Consensus       156 ~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~p  231 (318)
                      ++..  -+++ ..|.+  ...+|.+.|....++                         .-|+-.+|+|.|||-++-++
T Consensus       121 r~~~~~ag~~-~~I~~--~~G~a~e~L~~l~~~-------------------------~~~~~~fD~iFiDadK~~Y~  170 (247)
T PLN02589        121 LPVIQKAGVA-HKIDF--REGPALPVLDQMIED-------------------------GKYHGTFDFIFVDADKDNYI  170 (247)
T ss_pred             HHHHHHCCCC-CceEE--EeccHHHHHHHHHhc-------------------------cccCCcccEEEecCCHHHhH
Confidence            6543  2332 45544  345777777654421                         01234599999998876554

>PRK03612 spermidine synthase; Provisional

Probab=86.49  E-value=4.4  Score=41.45  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhh
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEE  157 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~  157 (318)
                      +.|-+.|+.|.|--...-..+.|+  .+-+.+|=|++-++..++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART  339 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence            679999999999888776667775  489999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 98  YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFID---ENRYYAAY 154
           +H+ + E      + R       FL F   ++ +   +   N     ++   + ++Y  Y
Sbjct: 479 HHLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 155 FEELHPEIDVFDVQYTTKIRETKELIASAKEQ-IRNECKP-VQNLLFSE 201
             +  P+       Y   +    + +   +E  I ++    ++  L +E
Sbjct: 534 ICDNDPK-------YERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.02
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	93.49
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	87.9
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	86.56
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	84.96
2i7c_A	283	Spermidine synthase; transferase, structural genom	84.61
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	81.58
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	81.47

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.02  E-value=0.008  Score=53.16  Aligned_cols=163  Identities=17%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCC--Cc-eeEEEEeecccc
Q 021017           98 YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP--EI-DVFDVQYTTKIR  174 (318)
Q Consensus        98 pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p--~l-eay~V~Y~T~~~  174 (318)
                      +.++.++.+.+...+++   |-+.|-+|-|. |-+|.+...+|+-+=+|-|++|++.+++..-  ++ +...|.+..  .
T Consensus        14 ~~v~~~~~~~L~~~l~~---a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--g   87 (202)
T 3cvo_A           14 LTMPPAEAEALRMAYEE---AEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--T   87 (202)
T ss_dssp             CCSCHHHHHHHHHHHHH---CSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--C
T ss_pred             ccCCHHHHHHHHHHhhC---CCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--e
Confidence            36889999999886654   78999999996 6666665558999999999999998885422  11 123343332  1


Q ss_pred             cHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccc----cccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhc
Q 021017          175 ETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVY----EVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSK  250 (318)
Q Consensus       175 ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evY----e~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r  250 (318)
                      ++.+.        ..-..|+....+    -.+..++..+.    +-..|+|+|||..+        ....+-  .+-+-|
T Consensus        88 da~~~--------~~wg~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~  145 (202)
T 3cvo_A           88 DIGPT--------GDWGHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSIT  145 (202)
T ss_dssp             CCSSB--------CGGGCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCS
T ss_pred             Cchhh--------hcccccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcC
Confidence            11100        001222221110    11111122221    14599999999753        222222  334444


Q ss_pred             CCCCCcceEEEecC-CchHHHhhhhhhccccccccccCceeeEEeec
Q 021017          251 KGGNPKTHIFVHDY-YRHVERMCGDEFLCKENLVEFNDMLAHFVLEK  296 (318)
Q Consensus       251 ~~g~~~TdVfVHDv-dR~VE~~~s~eFLC~~nlv~~~grL~HF~I~~  296 (318)
                      .+|    =++++|| .|.-+..- .+||   .+++..||+..|++.+
T Consensus       146 ~GG----~Iv~DNv~~r~~y~~v-~~~~---~~~~~~~~~a~f~~~p  184 (202)
T 3cvo_A          146 RPV----TLLFDDYSQRRWQHQV-EEFL---GAPLMIGRLAAFQVEP  184 (202)
T ss_dssp             SCE----EEEETTGGGCSSGGGG-HHHH---CCCEEETTEEEEEECC
T ss_pred             CCe----EEEEeCCcCCcchHHH-HHHH---hHHhhcCceEEEEeCC
Confidence            443    4677885 56433222 3443   3567899999999944

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.92  E-value=0.23  Score=48.12  Aligned_cols=148  Identities=13%  Similarity=0.080  Sum_probs=92.8

Q ss_pred             CCCccEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhhCCCcee--EE----EEeecccccHHHHHHHHhhhcC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEELHPEIDV--FD----VQYTTKIRETKELIASAKEQIR  188 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~~p~lea--y~----V~Y~T~~~ea~~LL~~~r~~~~  188 (318)
                      ..|-|.||.|+|--..+-..+.|. .+...+|-||.-|+-.++-+|.+-.  ++    =+.+--+.||.+-|+.+.++  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~--  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence            357799999999999998888875 4677899999999998888776522  21    12344467888888776532  


Q ss_pred             CCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCc-chhhhHHHHhhhc---CCCCCcceEEE---
Q 021017          189 NECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRM-SPIFTAGVLARSK---KGGNPKTHIFV---  261 (318)
Q Consensus       189 ~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM-~aIyTAavmAR~r---~~g~~~TdVfV---  261 (318)
                                                .-++|||++|.+.+.....|-.. ...||--.+...+   +.| |   |||   
T Consensus       282 --------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~-G---Vlv~Q~  331 (381)
T 3c6k_A          282 --------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD-G---KYFTQG  331 (381)
T ss_dssp             --------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE-E---EEEEEE
T ss_pred             --------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC-C---EEEEec
Confidence                                      12599999998876544455444 4678776543322   222 2   444   


Q ss_pred             -----ecCCchHHHhhhhhhcccc---cc--ccccCceeeEEee
Q 021017          262 -----HDYYRHVERMCGDEFLCKE---NL--VEFNDMLAHFVLE  295 (318)
Q Consensus       262 -----HDvdR~VE~~~s~eFLC~~---nl--v~~~grL~HF~I~  295 (318)
                           ++..+.+++.+.+.|---+   +.  |-.-+..|=|.+.
T Consensus       332 ~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~a  375 (381)
T 3c6k_A          332 NCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV  375 (381)
T ss_dssp             EETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEE
T ss_pred             CCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEE
Confidence                 5555677777776652111   11  2233447888774

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=87.90  E-value=2  Score=39.95  Aligned_cols=50  Identities=10%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             HHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCC
Q 021017          110 DVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHP  160 (318)
Q Consensus       110 ~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p  160 (318)
                      -++.. ..|=|.||.|+|-...+-..+.|.  -+...+|=||.-|+-.++-+|
T Consensus        77 ~l~~~-p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           77 PLLAH-GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP  128 (294)
T ss_dssp             HHHHS-SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             HHhhC-CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence            34444 779999999999999998888884  377889999999988776555

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=86.56  E-value=1.2  Score=41.64  Aligned_cols=44  Identities=11%  Similarity=0.009  Sum_probs=35.8

Q ss_pred             CccEEEecCCchhhhHhhhc--cCCcEEEecCChhHHHHhhhhCCC
Q 021017          118 PCNFLVFGLTQETLLWKALN--HNGRTVFIDENRYYAAYFEELHPE  161 (318)
Q Consensus       118 PCNfLVFGLg~dsllW~aLN--~gGrTvFLeEd~~~i~~~~~~~p~  161 (318)
                      |.+.|+.|.|--++.-..+.  ++.+.+-+|=|+..++.+++.++.
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~  135 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI  135 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence            44999999998877655554  577888999999999999988764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=84.96  E-value=2.8  Score=34.89  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=59.6

Q ss_pred             CCHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCc--hhhhHhh-hccCCcEEEecCChhHHHHh
Q 021017           79 LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQ--ETLLWKA-LNHNGRTVFIDENRYYAAYF  155 (318)
Q Consensus        79 lp~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~--dsllW~a-LN~gGrTvFLeEd~~~i~~~  155 (318)
                      =|.++++++-+|+.......+.+...-+.+..+++. ..|.++|=.|-|.  -++.++. ++++|+-+-+|-++..++.+
T Consensus        21 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a   99 (221)
T 3u81_A           21 DPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAIT   99 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHH
T ss_pred             CHHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHh-cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHH
Confidence            356899999999974444457777777777777775 7799999998755  4444443 35689999999999999888


Q ss_pred             hhh
Q 021017          156 EEL  158 (318)
Q Consensus       156 ~~~  158 (318)
                      +++
T Consensus       100 ~~~  102 (221)
T 3u81_A          100 QQM  102 (221)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=84.61  E-value=3.9  Score=36.32  Aligned_cols=46  Identities=11%  Similarity=0.039  Sum_probs=38.6

Q ss_pred             CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHPE  161 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p~  161 (318)
                      ..|-++|+.|.|...+.-..+.+  +++-+.+|=|+.-++.+++..+.
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            57889999999988877776666  46899999999999999887764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=81.58  E-value=6.5  Score=35.94  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=37.8

Q ss_pred             CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHPE  161 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p~  161 (318)
                      ..|-++|+.|.|.-...-..+.+  +++-+.+|=|+..++.+++..+.
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            57899999999987766555554  57899999999999999988764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=81.47  E-value=8  Score=34.22  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCCccEEEecCCchhhhHhhhcc-C-CcEEEecCChhHHHHhhhhCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNH-N-GRTVFIDENRYYAAYFEELHP  160 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~-g-GrTvFLeEd~~~i~~~~~~~p  160 (318)
                      ..|.+.|+.|.|--.+.-..+.+ + .+-+.+|-|+.-++.+++..+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence            56899999999988887777766 3 688999999999999888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.95
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	94.34
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	92.48
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	92.42
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	92.27
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	91.19
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	90.1
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	89.54
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	89.32
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	86.92
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	86.83
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	83.7

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.95  E-value=0.01  Score=49.72  Aligned_cols=78  Identities=21%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             CCHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEec--CCchhhhHh-hhccCCcEEEecCChhHHHHh
Q 021017           79 LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFG--LTQETLLWK-ALNHNGRTVFIDENRYYAAYF  155 (318)
Q Consensus        79 lp~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFG--Lg~dsllW~-aLN~gGrTvFLeEd~~~i~~~  155 (318)
                      =|.+|++++=.||..-+..-+.+.+.=+.+..+++. ..|=++|-+|  .|..++.|+ ++..||+-+=+|=++++++.+
T Consensus        19 ~p~~vl~~~~~~~~~~~~~m~i~~~~G~lL~~lv~~-~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a   97 (214)
T d2cl5a1          19 DPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAIT   97 (214)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHh-hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHH
Confidence            367899999999973222223445555677777776 6699999998  577777665 356789999999999998876


Q ss_pred             hh
Q 021017          156 EE  157 (318)
Q Consensus       156 ~~  157 (318)
                      ++
T Consensus        98 ~~   99 (214)
T d2cl5a1          98 QQ   99 (214)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.34  E-value=0.059  Score=46.76  Aligned_cols=45  Identities=16%  Similarity=0.229  Sum_probs=37.5

Q ss_pred             CCCccEEEecCCchhhhHhhhccCC-cEEEecCChhHHHHhhhhCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHNG-RTVFIDENRYYAAYFEELHP  160 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~gG-rTvFLeEd~~~i~~~~~~~p  160 (318)
                      ..|-|.||.|+|--..++..+.|+. +...+|=||.-|+-.++-+|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~  116 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIK  116 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhh
Confidence            6799999999999999999998865 56678999999987775443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.48  E-value=0.13  Score=43.59  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=88.1

Q ss_pred             CHHHHHHHhhhhccCCCCcC--CCHHHHHHHHHHHHhcCCCccEEEecC--CchhhhHh-hhccCCcEEEecCChhHHHH
Q 021017           80 PTTVINTLLLYASRSNDSYH--MTHSELKRISDVIRKCSSPCNFLVFGL--TQETLLWK-ALNHNGRTVFIDENRYYAAY  154 (318)
Q Consensus        80 p~~v~~ALvhYAt~sn~tpq--qt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTvFLeEd~~~i~~  154 (318)
                      ++++++.|..++. .+.-|.  .+..+-+.+..+++ ...|=+.|-+|-  |.-++.++ ++..+|+-+=+|-|+++++.
T Consensus        22 ~~~~l~~l~~~~~-~~~~~~m~~~~~~g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~   99 (227)
T d1susa1          22 EHEAMKELREVTA-KHPWNIMTTSADEGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL   99 (227)
T ss_dssp             CTTHHHHHHHHHH-TSTTGGGSCCHHHHHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH
T ss_pred             CCHHHHHHHHHHH-hCCCcccccCHHHHHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHH
Confidence            4578889999996 555554  34444455555555 478999999986  44444444 56679999999999999887


Q ss_pred             hhhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCC
Q 021017          155 FEELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPD  232 (318)
Q Consensus       155 ~~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~pe  232 (318)
                      +++..  .+++ .+|.  -...+|.+.|..--.                         +...+-.+|+|+|||=++..+ 
T Consensus       100 A~~~~~~~g~~-~~i~--~~~g~a~~~L~~l~~-------------------------~~~~~~~fD~iFiDa~k~~y~-  150 (227)
T d1susa1         100 GLPVIKKAGVD-HKID--FREGPALPVLDEMIK-------------------------DEKNHGSYDFIFVDADKDNYL-  150 (227)
T ss_dssp             HHHHHHHTTCG-GGEE--EEESCHHHHHHHHHH-------------------------CGGGTTCBSEEEECSCSTTHH-
T ss_pred             HHHHHHHhccc-ccee--eeehHHHHHHHHHHh-------------------------ccccCCceeEEEeccchhhhH-
Confidence            77543  2222 1222  234566666644321                         112235699999999775543 


Q ss_pred             CCCCcchhhhHHHHhhhcCCCCCcceEEEecC
Q 021017          233 GPGRMSPIFTAGVLARSKKGGNPKTHIFVHDY  264 (318)
Q Consensus       233 aPGRM~aIyTAavmAR~r~~g~~~TdVfVHDv  264 (318)
                            ..|-.+ +-.=+++|    =+++.||
T Consensus       151 ------~~~e~~-~~ll~~gG----iii~DNv  171 (227)
T d1susa1         151 ------NYHKRL-IDLVKVGG----VIGYDNT  171 (227)
T ss_dssp             ------HHHHHH-HHHBCTTC----CEEEETT
T ss_pred             ------HHHHHH-HhhcCCCc----EEEEccC
Confidence                  444433 44445554    3566666

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.42  E-value=0.16  Score=45.46  Aligned_cols=106  Identities=16%  Similarity=0.298  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCcee-E-EEEeecccccHH
Q 021017          102 HSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEIDV-F-DVQYTTKIRETK  177 (318)
Q Consensus       102 ~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~lea-y-~V~Y~T~~~ea~  177 (318)
                      ..|.-+-.-.+.. ..|=|.||.|+|--..+...+.|.  .+...+|=|+.-|+-.++-+|.... + +=+.+-...||.
T Consensus        92 YhE~l~h~pl~~~-~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~  170 (312)
T d2b2ca1          92 YQEMLAHLPMFAH-PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF  170 (312)
T ss_dssp             HHHHHHHHHHHHS-SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH
T ss_pred             HHHHhhhHHHhcC-CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH
Confidence            4454444445555 789999999999999999999986  5899999999999988876665321 0 112222346676


Q ss_pred             HHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHH
Q 021017          178 ELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAG  244 (318)
Q Consensus       178 ~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAa  244 (318)
                      +-|+..                               +-+||||++|.+.+..|  |   ...||--
T Consensus       171 ~~l~~~-------------------------------~~~yDvII~D~~dp~~~--~---~~L~t~e  201 (312)
T d2b2ca1         171 EFLKNH-------------------------------KNEFDVIITDSSDPVGP--A---ESLFGQS  201 (312)
T ss_dssp             HHHHHC-------------------------------TTCEEEEEECCC------------------
T ss_pred             HHHHhC-------------------------------CCCCCEEEEcCCCCCCc--c---hhhhhHH
Confidence            666421                               23599999999875433  2   3466643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.27  E-value=0.078  Score=46.61  Aligned_cols=151  Identities=15%  Similarity=0.288  Sum_probs=91.0

Q ss_pred             CCCccEEEecCCchhhhHhhhccCC--cEEEecCChhHHHHhhhhCCCcee--EEEEeecccccHHHHHHHHhhhcCCCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHNG--RTVFIDENRYYAAYFEELHPEIDV--FDVQYTTKIRETKELIASAKEQIRNEC  191 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~gG--rTvFLeEd~~~i~~~~~~~p~lea--y~V~Y~T~~~ea~~LL~~~r~~~~~~C  191 (318)
                      ..|=|.||.|+|-...+...+.|.+  +.+.+|=|+.-|+-.++-+|....  -+-+.+.-+.|+.+-+           
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l-----------  147 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL-----------  147 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH-----------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHH-----------
Confidence            6799999999999999999998853  788999999999888776543210  0111122223444433           


Q ss_pred             cccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHH---hhhcCCCCCcceEEEe------
Q 021017          192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVL---ARSKKGGNPKTHIFVH------  262 (318)
Q Consensus       192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavm---AR~r~~g~~~TdVfVH------  262 (318)
                                     ++.+.    -++|||++|.+.++.   |.  ...||--..   .|.=++| |   |||-      
T Consensus       148 ---------------~~~~~----~~yDvIi~D~~dp~~---~~--~~L~t~eF~~~~~~~L~~~-G---i~v~q~~s~~  199 (290)
T d1xj5a_         148 ---------------KNAAE----GSYDAVIVDSSDPIG---PA--KELFEKPFFQSVARALRPG-G---VVCTQAESLW  199 (290)
T ss_dssp             ---------------HTSCT----TCEEEEEECCCCTTS---GG--GGGGSHHHHHHHHHHEEEE-E---EEEEECCCTT
T ss_pred             ---------------hhccc----cCccEEEEcCCCCCC---cc--hhhCCHHHHHHHHHhcCCC-c---EEEEecCCcH
Confidence                           33222    369999999998553   22  467886433   3332222 2   4442      


Q ss_pred             ---cCCchHHHhhhhhhc-cccccc---cc-cCceeeEEeecCCCCccccc
Q 021017          263 ---DYYRHVERMCGDEFL-CKENLV---EF-NDMLAHFVLEKMDENSFEFC  305 (318)
Q Consensus       263 ---DvdR~VE~~~s~eFL-C~~nlv---~~-~grL~HF~I~~~~~~~~~FC  305 (318)
                         +.-+.+-+.+.+.|- ...|..   .. .+-.|=|.+.+.+.+...|.
T Consensus       200 ~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~~~~~~~~  250 (290)
T d1xj5a_         200 LHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFK  250 (290)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECSSSCCCSS
T ss_pred             HHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCCCCccccc
Confidence               222456667777774 445542   22 34589999954433333444

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=91.19  E-value=0.63  Score=40.94  Aligned_cols=148  Identities=19%  Similarity=0.267  Sum_probs=84.7

Q ss_pred             HHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCcee--E-EEEeecccccHHHHHHHHhh
Q 021017          111 VIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEIDV--F-DVQYTTKIRETKELIASAKE  185 (318)
Q Consensus       111 vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~lea--y-~V~Y~T~~~ea~~LL~~~r~  185 (318)
                      .+.. ..|=|.||.|+|-...+...+.|.  .+-.-+|=||.-|+-.++-+|....  + +=+-+--+.+|.+.|+..  
T Consensus        72 l~~~-~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~--  148 (312)
T d1uira_          72 MLTH-PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--  148 (312)
T ss_dssp             HHHS-SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--
T ss_pred             hhhC-CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc--
Confidence            3444 679999999999999988888764  4778899999999877765433210  0 001111245666665421  


Q ss_pred             hcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHH---HhhhcCCCCCcceEEE-
Q 021017          186 QIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGV---LARSKKGGNPKTHIFV-  261 (318)
Q Consensus       186 ~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAav---mAR~r~~g~~~TdVfV-  261 (318)
                                                   +.+||||+||.+.-+..+.|.  ...||--.   +.|.=+.| |   ||| 
T Consensus       149 -----------------------------~~~yDvIi~D~~dp~~~~~~~--~~L~t~eF~~~~~~~L~p~-G---vlv~  193 (312)
T d1uira_         149 -----------------------------EERYDVVIIDLTDPVGEDNPA--RLLYTVEFYRLVKAHLNPG-G---VMGM  193 (312)
T ss_dssp             -----------------------------CCCEEEEEEECCCCBSTTCGG--GGGSSHHHHHHHHHTEEEE-E---EEEE
T ss_pred             -----------------------------CCcccEEEEeCCCcccccchh--hhhhhHHHHHHHHHhcCCC-c---eEEE
Confidence                                         346999999997644444333  22555433   33332233 2   333 


Q ss_pred             ----e-----cCCchHHHhhhhhhccccc---cccccCceeeEEeec
Q 021017          262 ----H-----DYYRHVERMCGDEFLCKEN---LVEFNDMLAHFVLEK  296 (318)
Q Consensus       262 ----H-----DvdR~VE~~~s~eFLC~~n---lv~~~grL~HF~I~~  296 (318)
                          -     ++.+.+-+.+.+.|--=..   -|-+-|.-|.|.+.+
T Consensus       194 ~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS  240 (312)
T d1uira_         194 QTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLAS  240 (312)
T ss_dssp             EEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             ecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEe
Confidence                1     2234455667777732111   122335568888843

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=90.10  E-value=0.66  Score=36.78  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHh-cCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHH
Q 021017          100 MTHSELKRISDVIRK-CSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKE  178 (318)
Q Consensus       100 qt~~Ei~~~~~vL~~-~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~  178 (318)
                      .|..--..+++.|+. ....+++|=.|=|.-.+--.++..|.+-+|+|-|+.-++.++++   ++.+.+.-+....+++.
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N---~~~~~~~~~v~~~~~d~   99 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN---VRRTGLGARVVALPVEV   99 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH---HHHHTCCCEEECSCHHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH---HHhhccccceeeeehhc
Confidence            334444566777763 34577888777777777777888899999999999999988765   22233333445566776


Q ss_pred             HHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCC
Q 021017          179 LIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRG  228 (318)
Q Consensus       179 LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~G  228 (318)
                      .+...+..                            .-.||+|++|-|=|
T Consensus       100 ~~~~~~~~----------------------------~~~fD~If~DPPY~  121 (171)
T d1ws6a1         100 FLPEAKAQ----------------------------GERFTVAFMAPPYA  121 (171)
T ss_dssp             HHHHHHHT----------------------------TCCEEEEEECCCTT
T ss_pred             cccccccc----------------------------CCccceeEEccccc
Confidence            65544321                            12599999998844

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.54  E-value=0.21  Score=43.29  Aligned_cols=51  Identities=18%  Similarity=0.336  Sum_probs=39.3

Q ss_pred             HHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCC
Q 021017          109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHP  160 (318)
Q Consensus       109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p  160 (318)
                      .-.+.. ..|=|.||.|+|-.+.+=..+.|.  .+-..+|=||.-++-.++-+|
T Consensus        68 ~~l~~~-~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~  120 (274)
T d1iy9a_          68 VPLFTH-PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (274)
T ss_dssp             HHHHHS-SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             chhhcc-CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh
Confidence            334444 789999999999999888888764  477789999999887776543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.67  Score=40.39  Aligned_cols=92  Identities=17%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCcee-E-EEEeecccccHHHHHHHHhhhcCCCC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEIDV-F-DVQYTTKIRETKELIASAKEQIRNEC  191 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~lea-y-~V~Y~T~~~ea~~LL~~~r~~~~~~C  191 (318)
                      ..|=+.||.|+|-...+=..+.|.  -+.+-+|=||.-++-.++-+|.... + +=+.+....||.+.|+..        
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--------  148 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--------  148 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--------
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC--------
Confidence            679999999999998888888773  4778899999999888766543210 0 112222345676666421        


Q ss_pred             cccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhH
Q 021017          192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTA  243 (318)
Q Consensus       192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTA  243 (318)
                                             +-++|||++|.+.+..+  |   ..+||-
T Consensus       149 -----------------------~~~yDvIi~D~~~p~~~--~---~~L~t~  172 (285)
T d2o07a1         149 -----------------------QDAFDVIITDSSDPMGP--A---ESLFKE  172 (285)
T ss_dssp             -----------------------SSCEEEEEEECC----------------C
T ss_pred             -----------------------CCCCCEEEEcCCCCCCc--c---cccccH
Confidence                                   22699999999886543  2   356663

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=1.4  Score=36.72  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=89.2

Q ss_pred             HHHHHHHhhhhccCCCC--cCCCHHHHHHHHHHHHhcCCCccEEEecCCch-hhhHhh--hccCCcEEEecCChhHHHHh
Q 021017           81 TTVINTLLLYASRSNDS--YHMTHSELKRISDVIRKCSSPCNFLVFGLTQE-TLLWKA--LNHNGRTVFIDENRYYAAYF  155 (318)
Q Consensus        81 ~~v~~ALvhYAt~sn~t--pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d-sllW~a--LN~gGrTvFLeEd~~~i~~~  155 (318)
                      +++++.|-.++. .+..  ++.+.++=+.+..+++ ...|=|.|-.|-+.- |.+|-+  +..+|+-+=+|-|++++..+
T Consensus        23 ~~~l~~l~~~t~-~~~~~~~~i~~~~g~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A  100 (219)
T d2avda1          23 HPALRSLRLLTL-EQPQGDSMMTCEQAQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG  100 (219)
T ss_dssp             CHHHHHHHHHHH-TSTTGGGSCCHHHHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH
T ss_pred             CHHHHHHHHHHH-hCCCCCcccCHHHHHHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHH
Confidence            358888888886 4433  3556665555555554 588999999987543 455554  44689999999999998887


Q ss_pred             hhhCC--CceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCC
Q 021017          156 EELHP--EIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDG  233 (318)
Q Consensus       156 ~~~~p--~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~pea  233 (318)
                      ++...  +++.   +.+-.+.+|.+.|...-.+ .                         .+-.+|+|.+|+-+...+  
T Consensus       101 ~~~~~~ag~~~---~i~~~~Gda~e~l~~~~~~-~-------------------------~~~~fD~ifiD~dk~~y~--  149 (219)
T d2avda1         101 RPLWRQAEAEH---KIDLRLKPALETLDELLAA-G-------------------------EAGTFDVAVVDADKENCS--  149 (219)
T ss_dssp             HHHHHHTTCTT---TEEEEESCHHHHHHHHHHT-T-------------------------CTTCEEEEEECSCSTTHH--
T ss_pred             HHHHHhcCccc---eEEEEEeehhhcchhhhhh-c-------------------------ccCCccEEEEeCCHHHHH--
Confidence            75532  2221   2334567777777654421 0                         112489999998875543  


Q ss_pred             CCCcchhhhHHHHhhhcCCCCCcceEEEecCC
Q 021017          234 PGRMSPIFTAGVLARSKKGGNPKTHIFVHDYY  265 (318)
Q Consensus       234 PGRM~aIyTAavmAR~r~~g~~~TdVfVHDvd  265 (318)
                           ..|-.+ +-+=|+||    =++++|+-
T Consensus       150 -----~~~~~~-~~lL~~GG----vii~Dn~l  171 (219)
T d2avda1         150 -----AYYERC-LQLLRPGG----ILAVLRVL  171 (219)
T ss_dssp             -----HHHHHH-HHHEEEEE----EEEEECCS
T ss_pred             -----HHHHHH-HHHhcCCc----EEEEeCCc
Confidence                 344443 33334444    46778884

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.83  E-value=0.27  Score=43.38  Aligned_cols=44  Identities=14%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             CCCccEEEecCCchhhhHhhhccCC--cEEEecCChhHHHHhhhhC
Q 021017          116 SSPCNFLVFGLTQETLLWKALNHNG--RTVFIDENRYYAAYFEELH  159 (318)
Q Consensus       116 raPCNfLVFGLg~dsllW~aLN~gG--rTvFLeEd~~~i~~~~~~~  159 (318)
                      ..|=|.||.|+|-...+-..+.|.+  +-+.+|=||.-|+-.++-+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~  133 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYL  133 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence            6799999999999999988888854  5677899999988776544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=83.70  E-value=1.4  Score=37.14  Aligned_cols=64  Identities=9%  Similarity=0.092  Sum_probs=48.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEecC--CchhhhHhh----hccCCcEEEecCChhHHHHhhhhCCCce
Q 021017           99 HMTHSELKRISDVIRKCSSPCNFLVFGL--TQETLLWKA----LNHNGRTVFIDENRYYAAYFEELHPEID  163 (318)
Q Consensus        99 qqt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~a----LN~gGrTvFLeEd~~~i~~~~~~~p~le  163 (318)
                      .|+..++.+...+|.+.| |=++|=.|.  |.-.++|+.    +|..|+-+.+|-++.+........+.+.
T Consensus        63 ~k~p~d~~~~~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~  132 (232)
T d2bm8a1          63 LKDPDTQAVYHDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENIT  132 (232)
T ss_dssp             CSCHHHHHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEE
T ss_pred             ccCHHHHHHHHHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcccccee
Confidence            789999999999999966 999999998  444455543    4678999999988776554444444433