Citrus Sinensis ID: 021219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSAYFHTSSDVRTAPGSGSRSRRGL
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEcccccccccEEEEEEEEEccccccccccccccEEcccccEEEccccccccccccccccccccccccccccccHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MYQLLDTGFIGLIFSCFsedankvgRIQVIAFqssdgkqnhiskpiallpvnkstvidlesslssseslsarsgnvlaenpeqdtgdskivagswkgggrtselggffanvdanhperartggnyqtgdlsnaigdidpmdmsESMQEAMHRsnldmsgaeyvrkeiplhvlptssllkldspltsfTDLQRVLYEEERAAYNQAIMQnmsdgkvhpltyiHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLeseafkgsdsslssphhspshglrgsayfhtssdvrtapgsgsrsrrgl
Flexible Loop (DISEMBL)
MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFqssdgkqnhiskPIALLPVNKSTVIDLESSLSSSESLSARSGNVlaenpeqdtgdskiVAGSWKGGGRTSELGGFFANVDANHperartggnyqtgdLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVlptssllkldspLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSAYFhtssdvrtapgsgsrsrrgl
Low Complexity Region (SEG)
MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDlesslssseslsARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKgsdsslssphhspshglrgsAYFHTSSDVRTAPGSGSRSRRGL
Disordered region (IsUnstruct)
**QLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS**********PIALLPVN***************************************************LGGFFAN***************************************************YVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRL***********************************************************
Disordered Region (DISOPRED)
*YQ**DTGFIGLIFSCFSEDANKVGRIQVIA****************LLPVNKSTVI*********************************************ELGGFFANVDANHPER***************IGDIDPMDMSESMQEA****************EIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYN***********VHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKE****************************************************************
Disordered Region (DISEMBL)
MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVID***************GNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKS***********************LRGSAYFHTSSD***************
Disordered Region (DISPRO)
*YQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDL******************************************SELGGFFANVDANHPE**R******************P*DMSESM*EAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE**********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFKGSDSSLSSPHHSPSHGLRGSAYFHTSSDVRTAPGSGSRSRRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q4VA72	261	Lys-63-specific deubiquit	yes	no	0.199	0.241	0.441	2e-08
Q66GV6	261	Lys-63-specific deubiquit	N/A	no	0.199	0.241	0.441	2e-08
B5X8M4	260	Lys-63-specific deubiquit	N/A	no	0.199	0.242	0.426	1e-07
P46737	291	Lys-63-specific deubiquit	yes	no	0.199	0.216	0.426	3e-07
B2RYM5	291	Lys-63-specific deubiquit	yes	no	0.199	0.216	0.411	4e-07
Q7M757	291	Lys-63-specific deubiquit	no	no	0.313	0.340	0.299	3e-06
B0KWU8	316	Lys-63-specific deubiquit	no	no	0.126	0.126	0.536	3e-06
P46736	316	Lys-63-specific deubiquit	no	no	0.126	0.126	0.536	3e-06
Q5R9L6	247	Lys-63-specific deubiquit	yes	no	0.126	0.161	0.536	3e-06
A5PJP6	316	Lys-63-specific deubiquit	no	no	0.126	0.126	0.536	3e-06

>sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis GN=brcc3 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
           MYQ++D GF+GLIFSCF ED N K GRI    FQS   +++     I  P+ ++P N   
Sbjct: 111 MYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIR 170

Query: 56  VIDLESSL 63
            + LES++
Sbjct: 171 KVCLESAV 178

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the rnf8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: -

>sp|Q66GV6|BRCC3_XENLA Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
           MYQ++D GF+GLIFSCF ED N K GRI    FQS   +++     I  P+ ++P N   
Sbjct: 111 MYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIR 170

Query: 56  VIDLESSL 63
            + LES++
Sbjct: 171 KVCLESAV 178

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the rnf8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQ----NHISKPIALLPVNKST 55
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   ++      I  PI ++P     
Sbjct: 111 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVVPHEAIG 170

Query: 56  VIDLESSL 63
            + LES++
Sbjct: 171 KVCLESAV 178

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the rnf8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Salmo salar (taxid: 8030)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|P46737|BRCC3_MOUSE Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus GN=Brcc3 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   +++     I  PI ++P     
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERIEIPIHIVPHITIG 200

Query: 56  VIDLESSL 63
            + LES++
Sbjct: 201 KVCLESAV 208

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the RNF8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|B2RYM5|BRCC3_RAT Lys-63-specific deubiquitinase BRCC36 OS=Rattus norvegicus GN=Brcc3 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   +++     I  P+ ++P     
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKSSDYERIEIPVHVVPHVTIG 200

Query: 56  VIDLESSL 63
            + LES++
Sbjct: 201 KVCLESAV 208

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the RNF8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus GN=C6.1al PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)

Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
           +EY R EIP+H++P +++  +   L S  +L  +L +EE+ AY           ++H LT
Sbjct: 182 SEYERLEIPIHIVPRTTIGTV--CLRSAIELPGILCQEEQEAYR----------RIHGLT 229

Query: 220 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
           +      IH+ S +   +C  +     P +  L+DRL++N+ RL  L  E + L  E
Sbjct: 230 HLDSVTKIHNGSVFTKHLCSQMSAVCGPLLQWLEDRLEQNQQRLQELEQEKEDLMEE 286

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|B0KWU8|BRCC3_CALJA Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus GN=BRCC3 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the RNF8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Callithrix jacchus (taxid: 9483)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|P46736|BRCC3_HUMAN Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the RNF8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q5R9L6|BRCC3_PONAB Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii GN=BRCC3 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the RNF8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|A5PJP6|BRCC3_BOVIN Lys-63-specific deubiquitinase BRCC36 OS=Bos taurus GN=BRCC3 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
           MYQ++D GF+GLIFSCF ED N K GR+    FQS   +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181

Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the RNF8-dependent ubiquitination at double-strand breaks (DSBs). Catalytic subunit of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin in various substrates. Mediates the specific 'Lys-63'-specific deubiquitination associated with the COP9 signalosome complex (CSN), via the interaction of the BRISC complex with the CSN complex.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
225442853	437	PREDICTED: uncharacterized protein LOC10	0.996	0.720	0.729	1e-133
297743401	357	unnamed protein product [Vitis vinifera]	0.996	0.882	0.729	1e-133
449532194	359	PREDICTED: LOW QUALITY PROTEIN: lys-63-s	0.990	0.871	0.684	1e-118
449469008	436	PREDICTED: uncharacterized protein LOC10	0.990	0.717	0.681	1e-117
358248516	436	uncharacterized protein LOC100784991 [Gl	0.990	0.717	0.684	1e-116
356550598	436	PREDICTED: uncharacterized protein LOC10	0.990	0.717	0.671	1e-115
224058695	434	predicted protein [Populus trichocarpa]	0.958	0.698	0.677	1e-114
357455111	443	Lys-63-specific deubiquitinase BRCC36 [M	0.990	0.706	0.650	1e-113
255553089	413	C6.1a, putative [Ricinus communis] gi|22	0.895	0.685	0.696	1e-107
147864732	406	hypothetical protein VITISV_005282 [Viti	0.905	0.704	0.578	1e-101

>gi|225442853|ref|XP_002285369.1| PREDICTED: uncharacterized protein LOC100253140 [Vitis vinifera]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/322 (72%), Positives = 274/322 (85%), Gaps = 7/322 (2%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD+GFIGLIFSCFSEDA KVGRIQVIAFQS+DGKQ+++S+PI+L PV++S++ID+E
Sbjct: 115 MYQLLDSGFIGLIFSCFSEDAQKVGRIQVIAFQSTDGKQSNMSRPISLSPVHRSSIIDVE 174

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS SSSE+  A+SG    E+ EQDTGDS+ +A   KGGGR+S+LGGFFAN DAN+  R +
Sbjct: 175 SSFSSSENAPAKSGPARVESSEQDTGDSRTMALVNKGGGRSSDLGGFFANADANYLGRDK 234

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKL 180
            GGNY T +  NA+ D+DPMDMSESMQEAMHRSNLDMSGAEYVRKE+PL V PT SLLKL
Sbjct: 235 MGGNYHTNNSENAVVDVDPMDMSESMQEAMHRSNLDMSGAEYVRKEVPLLVFPTLSLLKL 294

Query: 181 DSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLS 240
           DSPLTSFTDLQRVLYEEERAAYNQAI+QNM DGKVHPL +IHHTSTYQASMCKL+EYCLS
Sbjct: 295 DSPLTSFTDLQRVLYEEERAAYNQAIVQNMRDGKVHPLAFIHHTSTYQASMCKLMEYCLS 354

Query: 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSAYF---- 296
           PAI+ALQDRLKENEIRLA+LTDEA++LE+EAFKGS+SS  SP +  SHG+RGSA F    
Sbjct: 355 PAINALQDRLKENEIRLAILTDEARTLETEAFKGSESSSGSPRNFQSHGIRGSASFGHRD 414

Query: 297 ---HTSSDVRTAPGSGSRSRRG 315
                S ++R+  G GSRSRRG
Sbjct: 415 LYPAESINLRSVAGPGSRSRRG 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743401|emb|CBI36268.3| unnamed protein product [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/322 (72%), Positives = 274/322 (85%), Gaps = 7/322 (2%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD+GFIGLIFSCFSEDA KVGRIQVIAFQS+DGKQ+++S+PI+L PV++S++ID+E
Sbjct: 35  MYQLLDSGFIGLIFSCFSEDAQKVGRIQVIAFQSTDGKQSNMSRPISLSPVHRSSIIDVE 94

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS SSSE+  A+SG    E+ EQDTGDS+ +A   KGGGR+S+LGGFFAN DAN+  R +
Sbjct: 95  SSFSSSENAPAKSGPARVESSEQDTGDSRTMALVNKGGGRSSDLGGFFANADANYLGRDK 154

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKL 180
            GGNY T +  NA+ D+DPMDMSESMQEAMHRSNLDMSGAEYVRKE+PL V PT SLLKL
Sbjct: 155 MGGNYHTNNSENAVVDVDPMDMSESMQEAMHRSNLDMSGAEYVRKEVPLLVFPTLSLLKL 214

Query: 181 DSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLS 240
           DSPLTSFTDLQRVLYEEERAAYNQAI+QNM DGKVHPL +IHHTSTYQASMCKL+EYCLS
Sbjct: 215 DSPLTSFTDLQRVLYEEERAAYNQAIVQNMRDGKVHPLAFIHHTSTYQASMCKLMEYCLS 274

Query: 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSAYF---- 296
           PAI+ALQDRLKENEIRLA+LTDEA++LE+EAFKGS+SS  SP +  SHG+RGSA F    
Sbjct: 275 PAINALQDRLKENEIRLAILTDEARTLETEAFKGSESSSGSPRNFQSHGIRGSASFGHRD 334

Query: 297 ---HTSSDVRTAPGSGSRSRRG 315
                S ++R+  G GSRSRRG
Sbjct: 335 LYPAESINLRSVAGPGSRSRRG 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532194|ref|XP_004173067.1| PREDICTED: LOW QUALITY PROTEIN: lys-63-specific deubiquitinase BRCC36-like, partial [Cucumis sativus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/323 (68%), Positives = 264/323 (81%), Gaps = 10/323 (3%)

Query: 2   YQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLES 61
           YQLLD+GFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNH+S+PI+L PV +++VID+ES
Sbjct: 39  YQLLDSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVES 98

Query: 62  SLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERART 121
           SLSSS+++S   G  L ENPEQDTGDS ++AG+ KG GR+SELG FFAN D N+  + + 
Sbjct: 99  SLSSSDNVSGNVGYGLGENPEQDTGDS-MIAGALKGTGRSSELGXFFANADTNYQGKEKI 157

Query: 122 GGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLD 181
           GG+Y   + ++ I DIDPMD+SESMQEAMHRSN++MS AE+ RKEIPLHV+PT+SL+KLD
Sbjct: 158 GGSYLINNTNSGITDIDPMDLSESMQEAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLD 217

Query: 182 SPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSP 241
           SPLTSFTDLQ VL+EEER+AYNQAI  NM DGKVHPLT+IHHTSTYQASMCKLIEYCLSP
Sbjct: 218 SPLTSFTDLQHVLFEEERSAYNQAISNNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSP 277

Query: 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSA------- 294
           AISALQDR+KENEIRLA+L +EA++LE EA K ++S   SPH   +HG R SA       
Sbjct: 278 AISALQDRVKENEIRLALLAEEARNLEVEAAKANESVPGSPHQV-THGSRASASPTHRDL 336

Query: 295 YFHTSS-DVRTAPGSGSRSRRGL 316
           Y  T+S   R+   S  RSR+GL
Sbjct: 337 YPSTASVGARSGGSSMYRSRKGL 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469008|ref|XP_004152213.1| PREDICTED: uncharacterized protein LOC101217628 [Cucumis sativus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 263/323 (81%), Gaps = 10/323 (3%)

Query: 2   YQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLES 61
           YQLLD+GFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNH+S+PI+L PV +++VID+ES
Sbjct: 116 YQLLDSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHLSRPISLSPVYRNSVIDVES 175

Query: 62  SLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERART 121
           SLSSS+++S   G    ENPEQDTGDS ++AG+ KG GR+SELG FFAN D N+  + + 
Sbjct: 176 SLSSSDNVSGNVGYGPGENPEQDTGDS-MIAGALKGTGRSSELGYFFANADTNYQGKEKI 234

Query: 122 GGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLD 181
           GG+Y   + ++ I DIDPMD+SESMQEAMHRSN++MS AE+ RKEIPLHV+PT+SL+KLD
Sbjct: 235 GGSYLINNTNSGITDIDPMDLSESMQEAMHRSNIEMSAAEFSRKEIPLHVMPTASLIKLD 294

Query: 182 SPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSP 241
           SPLTSFTDLQ VL+EEER+AYNQAI  NM DGKVHPLT+IHHTSTYQASMCKLIEYCLSP
Sbjct: 295 SPLTSFTDLQHVLFEEERSAYNQAISNNMKDGKVHPLTFIHHTSTYQASMCKLIEYCLSP 354

Query: 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSA------- 294
           AISALQDR+KENEIRLA+L +EA++LE EA K ++S   SPH   +HG R SA       
Sbjct: 355 AISALQDRVKENEIRLALLAEEARNLEVEAAKANESVPGSPHQV-THGSRASASPTHRDL 413

Query: 295 YFHTSS-DVRTAPGSGSRSRRGL 316
           Y  T+S   R+   S  RSR+GL
Sbjct: 414 YPSTASVGARSGGSSMYRSRKGL 436

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248516|ref|NP_001240150.1| uncharacterized protein LOC100784991 [Glycine max] gi|255635958|gb|ACU18325.1| unknown [Glycine max]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/323 (68%), Positives = 259/323 (80%), Gaps = 10/323 (3%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD+GFIGLIFSC+SED NKVGRIQVIAFQSSDGKQNH S+PI L PVN+S VID++
Sbjct: 115 MYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKQNHRSRPIPLSPVNRSPVIDID 174

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS SSSE++S + G   AEN EQDTGDS+ V  S K GGR S+LG FFAN DAN+  R +
Sbjct: 175 SSPSSSENVSTKPGYFEAENAEQDTGDSRSVVVS-KDGGR-SDLGNFFANADANYLGRDK 232

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKL 180
           +GGNY   +    I D+DPMDMSESMQEAMHRSNLDMSGAE+VRKEIPL+VLP  SL+ L
Sbjct: 233 SGGNYHPNNSDTNIVDVDPMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINL 292

Query: 181 DSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLS 240
           DSPL+S+TDLQ VL+EEE+ AYNQAI+QNM DGKVHPLT+IHHTSTYQAS+CKLIEYCLS
Sbjct: 293 DSPLSSYTDLQHVLFEEEQNAYNQAILQNMRDGKVHPLTFIHHTSTYQASLCKLIEYCLS 352

Query: 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHH--SPSH------GLRG 292
           PAI+ALQDRL+ENEIRLA+L++EAKSLE+EA++GS++S+ SP    SP H      GLR 
Sbjct: 353 PAINALQDRLRENEIRLAVLSEEAKSLEAEAYRGSEASVGSPRRVASPVHRGGSSPGLRN 412

Query: 293 SAYFHTSSDVRTAPGSGSRSRRG 315
                 S   R     GSRSR+G
Sbjct: 413 LHDSPESLGSRNVASPGSRSRKG 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550598|ref|XP_003543672.1| PREDICTED: uncharacterized protein LOC100781761 [Glycine max]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 256/323 (79%), Gaps = 10/323 (3%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD+GFIGLIFSC+SED NKVGRIQVIAFQSSDGK NH+S+P+ L PVN+S VID++
Sbjct: 115 MYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKHNHMSRPVPLSPVNRSPVIDID 174

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS SSSE++S R G   AEN EQDTGDS+ V  S K GGR S+LG FFAN DAN+  R +
Sbjct: 175 SSPSSSENVSTRPGYFKAENAEQDTGDSRSVVVS-KDGGR-SDLGNFFANADANYLGRDK 232

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKL 180
           +GGNY   +    I D+D MDMSESMQEAMHRSNLDMSGAE+VRKEIPL+VLP  SL+ +
Sbjct: 233 SGGNYHPNNSDTNIVDVDAMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINI 292

Query: 181 DSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLS 240
           DSPL+S+TDLQ VL+EEER AYNQAI+QN  DGKVHPLT+IHHTSTYQAS+CKLIEYCLS
Sbjct: 293 DSPLSSYTDLQHVLFEEERNAYNQAILQNKRDGKVHPLTFIHHTSTYQASLCKLIEYCLS 352

Query: 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHH--SPSH------GLRG 292
           PAI+ALQDRL+ENEIRLA+L +EAKSLE+EA++GS++S+ +P    SP H      GLR 
Sbjct: 353 PAINALQDRLRENEIRLAVLREEAKSLEAEAYRGSEASVGTPRRVASPVHRGGSSPGLRN 412

Query: 293 SAYFHTSSDVRTAPGSGSRSRRG 315
                 S   R     GSRSR+G
Sbjct: 413 LHDSPESLGSRNVASPGSRSRKG 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058695|ref|XP_002299607.1| predicted protein [Populus trichocarpa] gi|222846865|gb|EEE84412.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/326 (67%), Positives = 248/326 (76%), Gaps = 23/326 (7%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD GFIGLIFSCF+ED NKVGRIQVIAFQSSDGKQN++ +P++ LPVNKS++I+L+
Sbjct: 115 MYQLLDPGFIGLIFSCFNEDVNKVGRIQVIAFQSSDGKQNNMLRPVSALPVNKSSIIELD 174

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS S   SL         E PE DT DS+  AGS KGG R+  LG FFAN DAN+  R R
Sbjct: 175 SSSSDIASL---------EGPELDTADSR-AAGSSKGGARSLGLGDFFANADANYVGRER 224

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKL 180
            GGNY + +  + I DIDPMDMSESMQEAMHRSNLDMSGAEY R+EIPLHVLPT SLLKL
Sbjct: 225 IGGNYYSSNSGDKITDIDPMDMSESMQEAMHRSNLDMSGAEYSRREIPLHVLPTCSLLKL 284

Query: 181 DSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLS 240
           DSPL SF DLQRVLYEEER AYNQAI+QNM +GKVHPLT+IHHT+TYQASMCKLIEYCLS
Sbjct: 285 DSPLMSFGDLQRVLYEEERGAYNQAILQNMRNGKVHPLTFIHHTATYQASMCKLIEYCLS 344

Query: 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSL-----SSPHHSPSHGLRGSAY 295
           PAI+ALQ RL+EN+IRLA L DEAK LE E  KGS+  +      SP   PS GLRGSA 
Sbjct: 345 PAINALQGRLRENDIRLATLADEAKMLEMETAKGSELQISPSSSRSPRQVPSPGLRGSAL 404

Query: 296 -----FHTSSD---VRTAPGSGSRSR 313
                FH SS+    RT    GSRSR
Sbjct: 405 SGQRDFHGSSESLSSRTVASPGSRSR 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455111|ref|XP_003597836.1| Lys-63-specific deubiquitinase BRCC36 [Medicago truncatula] gi|355486884|gb|AES68087.1| Lys-63-specific deubiquitinase BRCC36 [Medicago truncatula]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/332 (65%), Positives = 257/332 (77%), Gaps = 19/332 (5%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD+GFIGLIFSC++EDANK+G+IQVIAFQSSDGKQN +S+PI L PVNKS++I ++
Sbjct: 114 MYQLLDSGFIGLIFSCYNEDANKIGKIQVIAFQSSDGKQNSMSRPIPLSPVNKSSIIHID 173

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS SSSE+L+ RSG    ++PEQDTGDS+  AG+ KGGGR+SELG FFAN DAN+    +
Sbjct: 174 SSPSSSENLTTRSGYFKGDSPEQDTGDSR-SAGASKGGGRSSELGNFFANADANYLGSVK 232

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKL 180
            G NY   + S+ I   DPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLP+ S + L
Sbjct: 233 DGENYHLNN-SDIIAVDDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPSLSFINL 291

Query: 181 DSPLTSFTDLQRVLYEEERAAYNQAIMQNMS-DGKVHPLTYIHHTSTYQASMCKLIEYCL 239
           DSPL+S+TDLQ VL+EEER AYNQAI+QN   DGKVHPLT+IHHTSTYQAS+CKLIEYCL
Sbjct: 292 DSPLSSYTDLQHVLFEEERTAYNQAILQNTRWDGKVHPLTFIHHTSTYQASLCKLIEYCL 351

Query: 240 SPAISALQDRLKENEIRLAMLTDEAKSLESEA--FKGSDSSLSSPHHSPSHGLRGSAYFH 297
           SPAI+ALQDRL+ENEIRLA+L++EAKSLE+EA   +GS++SL SP    S     S    
Sbjct: 352 SPAINALQDRLRENEIRLAVLSEEAKSLEAEASTSRGSEASLGSPRQVASPRQVASPIHR 411

Query: 298 TSSDVR--------------TAPGSGSRSRRG 315
            SS  R              +    GSRSR+G
Sbjct: 412 GSSSPRQRNSQSSSESLGSKSVASPGSRSRKG 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553089|ref|XP_002517587.1| C6.1a, putative [Ricinus communis] gi|223543219|gb|EEF44751.1| C6.1a, putative [Ricinus communis]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/300 (69%), Positives = 235/300 (78%), Gaps = 17/300 (5%)

Query: 24  VGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAENPEQ 83
           VGRIQVIAFQSSDGKQN+  +PI++ PVN+   ID+ESSLSSSE  S +SG+   E+ E 
Sbjct: 122 VGRIQVIAFQSSDGKQNNTIRPISVSPVNRG-YIDVESSLSSSEYTSVKSGSGRIESAEL 180

Query: 84  DTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMS 143
           DTGDS+  AGS         LG FFAN DAN+  R R GGNY+TG+   A  DIDPMDMS
Sbjct: 181 DTGDSRTAAGS--------NLGDFFANADANYVGRERIGGNYKTGNSDGAFFDIDPMDMS 232

Query: 144 ESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYN 203
           ESMQEAMHRSNLDMSGAEY+RKEIPLHVLPT +LLKLDSPLTSFTDLQRVLYEEER AY 
Sbjct: 233 ESMQEAMHRSNLDMSGAEYIRKEIPLHVLPTWALLKLDSPLTSFTDLQRVLYEEERGAYI 292

Query: 204 QAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDE 263
           QA++QNM DGK+HPLT+IHHTSTYQASMCKLIEYCLSPAI+ LQDRL+ENEIRLAMLTDE
Sbjct: 293 QAMLQNMRDGKIHPLTFIHHTSTYQASMCKLIEYCLSPAINTLQDRLRENEIRLAMLTDE 352

Query: 264 AKSLESEAFKGSDSSLSSPHHSPSHGLRGSAY-----FHTSSD---VRTAPGSGSRSRRG 315
           AK LESE F+GS+S+  SPH   SHGLRGSA       H SS+   VR     GSR+R G
Sbjct: 353 AKVLESETFRGSESASRSPHLVSSHGLRGSASSGARDMHNSSESLSVRAVASPGSRTRSG 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864732|emb|CAN81936.1| hypothetical protein VITISV_005282 [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/356 (57%), Positives = 243/356 (68%), Gaps = 70/356 (19%)

Query: 1   MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLE 60
           MYQLLD+GFIGLIFSCFSEDA KVGRIQVIAFQS+DGKQ+++S+PI+L PV++S++ID+E
Sbjct: 29  MYQLLDSGFIGLIFSCFSEDAQKVGRIQVIAFQSTDGKQSNMSRPISLSPVHRSSIIDVE 88

Query: 61  SSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERAR 120
           SS SSSE+  A+SG    E+ EQDTGDS+ +A   KGGGR+S+LGGFFAN DAN+  R +
Sbjct: 89  SSFSSSENAPAKSGPARVESSEQDTGDSRTMALVNKGGGRSSDLGGFFANADANYLGRDK 148

Query: 121 TGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS---------------------- 158
            GGNY T +  NA+ DIDPMDMSESMQEAMHRSNLDM                       
Sbjct: 149 MGGNYHTNNSENAVVDIDPMDMSESMQEAMHRSNLDMRLLLYLLLLQTRYRCPFDPGDIK 208

Query: 159 ------GAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSD 212
                 GAEYVRKE+PL V PT SLLKLDSPLTSFTDLQRVLYEEERAAYNQAI+QN S 
Sbjct: 209 PLFLKLGAEYVRKEVPLLVFPTLSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIVQNTS- 267

Query: 213 GKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIR--------LAMLTDEA 264
                                     LSPAI+ALQDRLKENEIR        LA+LTDEA
Sbjct: 268 --------------------------LSPAINALQDRLKENEIRTDLLVLKQLAILTDEA 301

Query: 265 KSLESEAFKGSDSSLSSPHHSPSHGLRGSA-------YFHTSSDVRTAPGSGSRSR 313
           +SLE+EAFKGS+SS  SP +  SHG+RGSA       Y   S ++R+  G G  ++
Sbjct: 302 RSLETEAFKGSESSSGSPRNFQSHGIRGSASLGHRDLYPAESINLRSVAGPGDNAK 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2016279	406	BRCC36A "AT1G80210" [Arabidops	0.844	0.657	0.660	8e-91
TAIR|locus:2083318	405	BRCC36B "AT3G06820" [Arabidops	0.841	0.656	0.653	5.6e-88
UNIPROTKB|F1P4L2	226	BRCC3 "Uncharacterized protein	0.325	0.455	0.302	1.4e-15
MGI|MGI:2389572	291	Brcc3 "BRCA1/BRCA2-containing	0.332	0.360	0.297	2e-15
UNIPROTKB|F1RZ41	291	BRCC36 "Uncharacterized protei	0.332	0.360	0.306	2.5e-15
RGD|1588543	291	Brcc3 "BRCA1/BRCA2-containing	0.332	0.360	0.297	1e-14
UNIPROTKB|P46736	316	BRCC3 "Lys-63-specific deubiqu	0.325	0.325	0.293	5.4e-14
UNIPROTKB|B0KWU8	316	BRCC3 "Lys-63-specific deubiqu	0.325	0.325	0.293	5.4e-14
MGI|MGI:3647286	291	Gm5136 "predicted gene 5136" [	0.332	0.360	0.297	1.3e-13
UNIPROTKB|A5PJP6	316	BRCC3 "Lys-63-specific deubiqu	0.325	0.325	0.284	1.6e-13

TAIR|locus:2016279 BRCC36A "AT1G80210" [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 181/274 (66%), Positives = 210/274 (76%)

Query:     1 MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDXX 60
             MYQLLD+GFIGLIFSCFSEDANKVGRIQVIAFQSSDGK N I K ++L+  NK +VID  
Sbjct:   116 MYQLLDSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDLE 175

Query:    61 XXXXXXXXXXARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFAN-VDANHPERA 119
                        RS +   +NPE DT D+   +GS KGGGR S+   FF N  +AN+  R 
Sbjct:   176 SSFSSSDSIYQRSSSARGDNPELDTSDTATTSGS-KGGGRVSDFEAFFVNNTEANNTRRD 234

Query:   120 RTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLK 179
              T GNY     S AI +ID MDMSESMQEAMHRSNL+ SG  YVRKE+PLHVLPTSSLL+
Sbjct:   235 GTSGNYS----STAI-EIDSMDMSESMQEAMHRSNLETSGVGYVRKEVPLHVLPTSSLLQ 289

Query:   180 LDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCL 239
             L+SPL SF  LQRVLYEEERAAY+Q++ Q+  DG+VHPL +IH+TSTYQASMCKLIEYCL
Sbjct:   290 LNSPLASFKSLQRVLYEEERAAYHQSVQQSKRDGRVHPLAFIHNTSTYQASMCKLIEYCL 349

Query:   240 SPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273
             SPAI+ALQDRLKEN+IRLAML DEA+ LE++  K
Sbjct:   350 SPAINALQDRLKENKIRLAMLMDEAEVLEAQKLK 383

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0006310 "DNA recombination" evidence=IMP

TAIR|locus:2083318 BRCC36B "AT3G06820" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
 Identities = 179/274 (65%), Positives = 208/274 (75%)

Query:     1 MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDXX 60
             MYQLLD+GFIGLIFSCFSEDANKVGRIQVIAFQSSDGK N I K ++L+  NK +VID  
Sbjct:   116 MYQLLDSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDIE 175

Query:    61 XXXXXXXXXXARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFAN-VDANHPERA 119
                        RS +     PE DT D+   +GS KGGGR S+ G FF N ++AN   R 
Sbjct:   176 SSSSSSDSIYQRSSS---SKPELDTIDTATTSGS-KGGGRVSDFGPFFTNNIEANITGRD 231

Query:   120 RTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLK 179
              T   +++G+LS+    ID MDMSESMQEAM RSNLD SGA YVRKE+PLHVLPTSSLL 
Sbjct:   232 ET---HKSGNLSSTTIGIDSMDMSESMQEAMLRSNLDTSGAGYVRKEVPLHVLPTSSLLP 288

Query:   180 LDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCL 239
             ++SPL SF  LQRVLYEEERAAY Q++ QNM DG+VHPL +IH+TSTYQASMCKLIEYCL
Sbjct:   289 VNSPLASFKSLQRVLYEEERAAYYQSVQQNMRDGRVHPLAFIHNTSTYQASMCKLIEYCL 348

Query:   240 SPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273
             SPAI+ALQDR KEN+IRLAML DEA+ LE++  K
Sbjct:   349 SPAINALQDRQKENKIRLAMLMDEAEVLEAQKLK 382

GO:0003674 "molecular_function" evidence=ND

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006281 "DNA repair" evidence=IMP

UNIPROTKB|F1P4L2 BRCC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 33/109 (30%), Positives = 62/109 (56%)

Query:   162 YVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYI 221
             Y R EIP+HV+P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T I
Sbjct:   119 YERIEIPIHVVPHETIGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVTKI 172

Query:   222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
             H+ S +  ++C  +     P +  L+DRL++N+ R+  L  E + L  E
Sbjct:   173 HNGSVFTKNLCSQMSAISGPLLQWLEDRLEQNKQRVQELQQEKEQLLEE 221

GO:0000152 "nuclear ubiquitin ligase complex" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0031572 "G2 DNA damage checkpoint" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0070531 "BRCA1-A complex" evidence=IEA

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=IEA

GO:0070552 "BRISC complex" evidence=IEA

MGI|MGI:2389572 Brcc3 "BRCA1/BRCA2-containing complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 33/111 (29%), Positives = 63/111 (56%)

Query:   160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
             +EY R EIP+H++P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T
Sbjct:   182 SEYERIEIPIHIVPHITIGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVT 235

Query:   220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
              IH+ S +  ++C  +     P +  L+DRL++N+  L  L  E + L  E
Sbjct:   236 KIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMEE 286

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=ISO

GO:0010165 "response to X-ray" evidence=ISO

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=ISO

GO:0031572 "G2 DNA damage checkpoint" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0045739 "positive regulation of DNA repair" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0070531 "BRCA1-A complex" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=ISO

GO:0070552 "BRISC complex" evidence=ISO

UNIPROTKB|F1RZ41 BRCC36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 34/111 (30%), Positives = 63/111 (56%)

Query:   160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
             +EY R EIP+HV+P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T
Sbjct:   182 SEYERIEIPIHVVPHVAVGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVT 235

Query:   220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
              IH+ S +  ++C  +     P +  L+DRL++N+  L  L  E + L  E
Sbjct:   236 KIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQE 286

GO:0070552 "BRISC complex" evidence=IEA

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=IEA

GO:0070531 "BRCA1-A complex" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031572 "G2 DNA damage checkpoint" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0000152 "nuclear ubiquitin ligase complex" evidence=IEA

RGD|1588543 Brcc3 "BRCA1/BRCA2-containing complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 33/111 (29%), Positives = 64/111 (57%)

Query:   160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
             ++Y R EIP+HV+P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T
Sbjct:   182 SDYERIEIPVHVVPHVTIGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVT 235

Query:   220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
              IH+ S +  ++C  +     P +  L+DRL++N+  L  L  E + L +E
Sbjct:   236 KIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQREKEELMAE 286

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0000152 "nuclear ubiquitin ligase complex" evidence=IEA;ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO;ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006302 "double-strand break repair" evidence=ISO;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=ISO;ISS

GO:0010165 "response to X-ray" evidence=IEA;ISO

GO:0010212 "response to ionizing radiation" evidence=ISO;ISS

GO:0030234 "enzyme regulator activity" evidence=IEA;ISO

GO:0031572 "G2 DNA damage checkpoint" evidence=ISO;ISS

GO:0031593 "polyubiquitin binding" evidence=ISO;ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0070531 "BRCA1-A complex" evidence=ISO;ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO;ISS

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=ISO;ISS

GO:0070552 "BRISC complex" evidence=ISO;ISS

UNIPROTKB|P46736 BRCC3 "Lys-63-specific deubiquitinase BRCC36" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
 Identities = 32/109 (29%), Positives = 61/109 (55%)

Query:   162 YVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYI 221
             Y R EIP+H++P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T I
Sbjct:   209 YERIEIPIHIVPHVTIGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVTKI 262

Query:   222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
             H+ S +  ++C  +     P +  L+DRL++N+  L  L  E + L  E
Sbjct:   263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQE 311

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000152 "nuclear ubiquitin ligase complex" evidence=IDA

GO:0070552 "BRISC complex" evidence=IDA

GO:0006302 "double-strand break repair" evidence=IMP

GO:0031572 "G2 DNA damage checkpoint" evidence=IMP

GO:0070531 "BRCA1-A complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=IMP;IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IMP

GO:0008237 "metallopeptidase activity" evidence=IMP

GO:0045739 "positive regulation of DNA repair" evidence=IMP

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0010165 "response to X-ray" evidence=IDA

GO:0030234 "enzyme regulator activity" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

UNIPROTKB|B0KWU8 BRCC3 "Lys-63-specific deubiquitinase BRCC36" [Callithrix jacchus (taxid:9483)]

 Score = 128 (50.1 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
 Identities = 32/109 (29%), Positives = 61/109 (55%)

Query:   162 YVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYI 221
             Y R EIP+H++P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T I
Sbjct:   209 YERIEIPIHIVPHVTIGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVTKI 262

Query:   222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
             H+ S +  ++C  +     P +  L+DRL++N+  L  L  E + L  E
Sbjct:   263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQQEKEELMQE 311

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0010212 "response to ionizing radiation" evidence=ISS

GO:0031572 "G2 DNA damage checkpoint" evidence=ISS

GO:0031593 "polyubiquitin binding" evidence=ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISS

GO:0070531 "BRCA1-A complex" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=ISS

GO:0070552 "BRISC complex" evidence=ISS

MGI|MGI:3647286 Gm5136 "predicted gene 5136" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 33/111 (29%), Positives = 61/111 (54%)

Query:   160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
             +EY R EIP+H++P +++  +   L S  +L  +L +EE+ AY +  +  ++   +  +T
Sbjct:   182 SEYERLEIPIHIVPRTTIGTVC--LRSAIELPGILCQEEQEAYRR--IHGLTH--LDSVT 235

Query:   220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
              IH+ S +   +C  +     P +  L+DRL++N+ RL  L  E + L  E
Sbjct:   236 KIHNGSVFTKHLCSQMSAVCGPLLQWLEDRLEQNQQRLQELEQEKEDLMEE 286

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A5PJP6 BRCC3 "Lys-63-specific deubiquitinase BRCC36" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 31/109 (28%), Positives = 61/109 (55%)

Query:   162 YVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYI 221
             Y R EIP+H++P  ++ K+   L S  +L ++L +EE+ AY +  + +++   +  +T I
Sbjct:   209 YERIEIPIHIVPHVTIGKVC--LESAVELPKILCQEEQDAYRR--IHSLTH--LDSVTKI 262

Query:   222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
             H+ S +  ++C  +     P +  L+DRL++N+  +  L  E + L  E
Sbjct:   263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHVQELQQEKEELLQE 311

GO:0070552 "BRISC complex" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0031593 "polyubiquitin binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0070537 "histone H2A K63-linked deubiquitination" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0010212 "response to ionizing radiation" evidence=ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0070531 "BRCA1-A complex" evidence=ISS

GO:0031572 "G2 DNA damage checkpoint" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034568001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
cd08068	244	cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3	6e-27
cd08068	244	cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3	2e-14

>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

 Score =  105 bits (264), Expect = 6e-27
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 120 RTGGNYQTGDLSNAIGDI------DPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLP 173
           RT   YQ  D S  +G I      D       +Q    +S       +Y R E+PL ++P
Sbjct: 111 RTQAMYQMMD-SGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQGNKAGQYERIEVPLEIVP 169

Query: 174 TSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCK 233
           TS++ +  + L S  +L  +LY+EE  AYN+A+     D    PLT IH+ S Y  S+C 
Sbjct: 170 TSTISE--ACLESLVELPEILYQEEEDAYNKALQSCDLD----PLTKIHNGSVYTKSLCH 223

Query: 234 LIEYCLSPAISALQDRLKENE 254
           ++E    P +  L+ RL++N+
Sbjct: 224 ILETISGPLLQLLEARLEQNK 244

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-containing complex and is essential for the integrity of the complex. There are studies suggesting that MERIT40/NBA1 ties BRCA1 complex integrity, DSB recognition, and ubiquitin chain activities to the DNA damage response. It has also been shown that BRCA1-containing complex resembles the lid complex of the 26S proteasome. Length = 244

>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 5/57 (8%)

Query: 1   MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVN 52
           MYQ++D+GF+GLIFSCF+ED + K+G +QV  FQS  G +      I  P+ ++P +
Sbjct: 115 MYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQGNKAGQYERIEVPLEIVPTS 171

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-containing complex and is essential for the integrity of the complex. There are studies suggesting that MERIT40/NBA1 ties BRCA1 complex integrity, DSB recognition, and ubiquitin chain activities to the DNA damage response. It has also been shown that BRCA1-containing complex resembles the lid complex of the 26S proteasome. Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
cd08068	244	MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun	100.0
KOG1555	316	consensus 26S proteasome regulatory complex, subun	99.91
cd08067	187	MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu	96.32

>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

Probab=100.00  E-value=7.4e-37  Score=281.52  Aligned_cols=129  Identities=44%  Similarity=0.845  Sum_probs=122.1

Q ss_pred             CcccccccceeEEEEeeecC-ccccccEEEEEEecCCCCccccccccccccCCCccccccccccccccccccccccccCC
Q 021219            1 MYQLLDTGFIGLIFSCFSED-ANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAE   79 (316)
Q Consensus         1 myQ~ld~gfvGlIFScf~~d-~~k~griqviaFQs~~g~~~~~~~pi~~~p~~~~~~id~~ss~sss~~~~~~~~~~~~e   79 (316)
                      +||++|++|+|||||||.++ .+++|+++|.|||+.+|++                                        
T Consensus       115 ~~q~~~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g~~----------------------------------------  154 (244)
T cd08068         115 MYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQGNK----------------------------------------  154 (244)
T ss_pred             HHHhhCCCcEEEEEEecCCccccccCCEEEEEEEecCCCC----------------------------------------
Confidence            58999999999999999988 8899999999999999876                                        


Q ss_pred             CCCcCCCcccccccccCCCCccccccccccccCCCCcccccCCCCCCCCCCCCcccCCCCCCCChHHHHHhhhcccCCCC
Q 021219           80 NPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSG  159 (316)
Q Consensus        80 ~~~~d~~ds~~~~~~~k~~~r~~~~~~ff~~~d~n~~~~~~~~~~y~~~~~~~~~~~~d~~dms~~mqeA~hrs~ld~sg  159 (316)
                                                                                                     +
T Consensus       155 -------------------------------------------------------------------------------~  155 (244)
T cd08068         155 -------------------------------------------------------------------------------A  155 (244)
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           7


Q ss_pred             CceEEEeeeeeeecCCCccccCCcchhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHh
Q 021219          160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCL  239 (316)
Q Consensus       160 gey~RkEVPL~VvP~~ti~k~~~~LeSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~  239 (316)
                      |+|+|+||||+|+|+.+++++  ||+++++||+||+|||++||++|+.+    +..||||+|||++|||++||||||+|+
T Consensus       156 ~~~~~~e~pl~i~~~~~~~~~--~~~~~~~l~~~l~~e~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
T cd08068         156 GQYERIEVPLEIVPTSTISEA--CLESLVELPEILYQEEEDAYNKALQS----CDLDPLTKIHNGSVYTKSLCHILETIS  229 (244)
T ss_pred             CcceEEEeeeEEecCcccccc--CHHHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHhhHHHHHHHHHHHHHHH
Confidence            889999999999999999997  69999999999999999999999944    566799999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 021219          240 SPAISALQDRLKENE  254 (316)
Q Consensus       240 ~PLLq~LEdRL~~Nk  254 (316)
                      +|+|++||+|+++|+
T Consensus       230 ~p~~~~l~~~~~~~~  244 (244)
T cd08068         230 GPLLQLLEARLEQNK  244 (244)
T ss_pred             hhHHHHHHHHHHhcC
Confidence            999999999999985

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai

>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.1e-25  Score=211.19  Aligned_cols=229  Identities=25%  Similarity=0.301  Sum_probs=188.8

Q ss_pred             CcccccccceeEEEEeeecCccccccEEEEEEecCCCCccccccccccccCCCccccccccccccccccccccccccCCC
Q 021219            1 MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAEN   80 (316)
Q Consensus         1 myQ~ld~gfvGlIFScf~~d~~k~griqviaFQs~~g~~~~~~~pi~~~p~~~~~~id~~ss~sss~~~~~~~~~~~~e~   80 (316)
                      ||+.+|.++.|++||||.|+.++|+++|++.|+..+|+.--       .+-...+.+++++.+|+.|..+|.+--.+.+.
T Consensus        76 vv~v~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~-------VVGWYHSHP~f~~wpS~vDi~tQ~syq~~~~r  148 (316)
T KOG1555|consen   76 VVDVFAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPEL-------VVGWYHSHPGFGCWPSLVDIDTQQSYQALSSR  148 (316)
T ss_pred             eeeeeccccccceecccchhccHHHHHHHHHHHHhcCCcce-------EEeeccCCCCCCCCccccchhHHHHHhhhccC
Confidence            57899999999999999999999999999999999999822       24458889999999999999999998877665


Q ss_pred             CCcCCCcccccccccCCCCccccccccccc-cCCCCcccccCCCCCCCCCCCCcccCCCCCCCChHHHHHhhhcccCCCC
Q 021219           81 PEQDTGDSKIVAGSWKGGGRTSELGGFFAN-VDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSG  159 (316)
Q Consensus        81 ~~~d~~ds~~~~~~~k~~~r~~~~~~ff~~-~d~n~~~~~~~~~~y~~~~~~~~~~~~d~~dms~~mqeA~hrs~ld~sg  159 (316)
                      .-.++.|    ...++.|++..|  .|+.+ ..++..+          ++-+.....+++|||+++|||++|+.|     
T Consensus       149 ~~a~~v~----~i~S~~g~vv~d--~f~~In~~~~~~~----------~eprqtts~~~~m~~~~s~q~~~~g~n-----  207 (316)
T KOG1555|consen  149 AVAVVVD----PIQSPYGKVVPD--AFSSINPQWISPG----------GEPRQTTSNGGHMDMQESLQEDIHGLN-----  207 (316)
T ss_pred             Ccceeee----cccCCCCCccCC--hhhhcCcccccCC----------CCCccccccccccccchhHHhHhhccC-----
Confidence            5555555    455899999877  68864 4665554          344556678999999999999999999     


Q ss_pred             CceEEEeeeeeeecCCCccccCCcchhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHh
Q 021219          160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCL  239 (316)
Q Consensus       160 gey~RkEVPL~VvP~~ti~k~~~~LeSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~  239 (316)
                       .|.|+|||++|.|.......|.|++++.++++++|+||+++|+...      .+..-|+++|| .+++.  |+.++.. 
T Consensus       208 -~y~~~ei~~~v~~~~~~~~~nv~~~s~~~~~~~~y~e~~k~~~~~~------~~~~sL~~~~N-~~~~~--~k~~~~~-  276 (316)
T KOG1555|consen  208 -RYYRIEIPLHVLPYEQLMLLNVPLKSWKSLQDVLYEEKLKAYLQSV------PSMKSLSKVYN-KVCDV--CKQMSDF-  276 (316)
T ss_pred             -ceEEEEeeEEechhhhhchhccchhhhhhcchhhHHHHHHHhhhhh------hHHHhHHHHHH-HHHHH--HhhccHH-
Confidence             8999999999999765555556899999999999999999998555      34567999999 77776  8887766 


Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHH
Q 021219          240 SPAISALQDRLKEN-EIRLAMLTDE--AKSLESEA  271 (316)
Q Consensus       240 ~PLLq~LEdRL~~N-k~Rl~~Lq~E--keqL~~el  271 (316)
                         +++|+|+.++| |+.++....|  .+.|.+++
T Consensus       277 ---~~~i~d~~~~~~kq~l~~~v~~~~~~nl~~~l  308 (316)
T KOG1555|consen  277 ---LLMIEDVGEQNPKQHLKEAVTELLSENLVQEL  308 (316)
T ss_pred             ---HHHHHHhhhhhHHHHhHHHhhhhcccchhhcc
Confidence               99999999999 8888777777  56666655

>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase

Probab=96.32  E-value=0.0022  Score=57.68  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=33.2

Q ss_pred             Cccccccc-------ceeEEEEeeecCccccccEEEEEEecCCCCcc
Q 021219            1 MYQLLDTG-------FIGLIFSCFSEDANKVGRIQVIAFQSSDGKQN   40 (316)
Q Consensus         1 myQ~ld~g-------fvGlIFScf~~d~~k~griqviaFQs~~g~~~   40 (316)
                      +||.|.+|       |||+|+|+|+++.+ ...-+|.||+..+..-+
T Consensus       105 ~yQ~~~~~~~~~~~p~v~~I~~P~~~~~~-~~~s~i~~f~~~~~~~~  150 (187)
T cd08067         105 DYQIMFKGSDSGYEPCVGLICSPYDRRNS-TPESQITCFWVMPPPEN  150 (187)
T ss_pred             HHHhhccccccCCCCeEEEEEccccCCCC-CCCCcEEEEEEECCCCC
Confidence            49999997       99999999999876 34468899999988766

This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	93.53
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	80.6

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.53  E-value=0.014  Score=54.28  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CcccccccceeEEEEeeecCccccccEEEEEEecCC
Q 021219            1 MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSD   36 (316)
Q Consensus         1 myQ~ld~gfvGlIFScf~~d~~k~griqviaFQs~~   36 (316)
                      +||.+++.||+|||.+|.++   .|++.+.|||+.+
T Consensus       128 ~yQ~~~~~~V~lV~Dp~~t~---~G~~~i~Afr~~~  160 (306)
T 4b4t_V          128 SFEQLNSRAVAVVVDPIQSV---KGKVVIDAFRLID  160 (306)
T ss_dssp             HHHHHCSSCEEEEECSSSSS---SCSSCEEEEECCH
T ss_pred             HHHhcCCCcEEEEECCCcCC---CCceeeeEEEecC
Confidence            48999999999999999865   3999999999876

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=80.60  E-value=4.1  Score=38.30  Aligned_cols=75  Identities=11%  Similarity=0.070  Sum_probs=47.5

Q ss_pred             HhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219          190 LQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLES  269 (316)
Q Consensus       190 Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~  269 (316)
                      |.+...+.|...+.+.++|     +++.+-+=.-..--|++-|++.   +.-|...||....|.+.|+++|+.|...|.+
T Consensus       386 l~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (471)
T 3mq9_A          386 RDGLRAVMEARNVTHLLQQ-----ELTEAQKGFQDVEAQAATANHT---VMALMASLDAEKAQGQKKVEELEGEITTLNH  457 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhhhHHHHHHH-----HHHHHhhhHHHHHHHhhhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666643     2344443333444455666553   3456777888888888888888888888887


Q ss_pred             HHh
Q 021219          270 EAF  272 (316)
Q Consensus       270 el~  272 (316)
                      +|.
T Consensus       458 ~~~  460 (471)
T 3mq9_A          458 KLQ  460 (471)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00