Citrus Sinensis ID: 021363

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIAR
cEEEEEEccccEEEEEEccccEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccEEEEEEEEccccccEEEEEEccccEEEEEccccEEEEcccccccccccccccccccccEEccccccccccEEEEEccccEEEEEEEcccEEEEEccccccccccccccEEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccccEEEcEEEEEEccccEEEEEEccEEEEEcccccccEEEEEccccEEEEEEccccEEEc
ccccccccccccHHHHHccEEEEEEEcccccccccccccccccEEEcccccEEEEEEccccEEEEEEcccEEEEEEcccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccEEccccccccccccccEEEEEEccccccccccccccccccEEEEcccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccEccccccccccHHHHcccccccEEEEcccEEEEEcccccEEEEEEEcccEEEEEEccccHccc
memngskreenekmeECKETVVYMWgylpgtspekspilspiparlcggdswkdvcgggcgfalatsesgklitwgsaddegqsyltsgkhgetpepfplpteaSVVKAAAGWAHCVSVTeagevytwgwrecvpsakvtrdfgsagsfqkdstgkqsalpteqappsdkrageEVVKrrktssareesenpasgdefftlspclvtlnpgvkitkvaaggRHTLILSDmgqvwgwgyggegqlglgsrikmvptphlipclehaasgkdrpllvrqgsvnssgkagRSYVKEIACggrhsavvtdmsypiar
memngskreenekmeECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGsfqkdstgkqsalpteqappsdkrageevvkrrktssareesenpasgdefftlsPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGsvnssgkagrSYVKeiacggrhsavvtdmsypiar
MEMNGSkreenekmeeckeTVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMgqvwgwgyggegqlglgSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIAR
*****************KETVVYMWGYLPGT*****PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG***************************ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT*********************************************************FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAA***********************YVKEIACGGRHSAVV*********
****G**REENEKMEECKETVVYMWGYLPGT***********PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTR******************LPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIAR
***************ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGS*************************************************GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG*********RSYVKEIACGGRHSAVVTDMSYPIAR
************KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK*******************SALPTEQAPPSDKRAGEEVVKRRKTSSAREES**PASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSY****
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MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDMSYPIAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q9FN03 440 Ultraviolet-B receptor UV no no 0.578 0.411 0.282 1e-09
Q9UII4 1024 E3 ISG15--protein ligase yes no 0.552 0.168 0.285 2e-09
Q4R828376 RCC1 domain-containing pr N/A no 0.501 0.417 0.272 2e-09
Q99LJ7 551 RCC1 and BTB domain-conta yes no 0.581 0.330 0.262 6e-09
A6NED2376 RCC1 domain-containing pr no no 0.527 0.438 0.289 7e-09
Q6P798 551 RCC1 and BTB domain-conta yes no 0.581 0.330 0.262 8e-09
Q5RCZ7 551 RCC1 and BTB domain-conta no no 0.629 0.357 0.272 1e-08
O95199 551 RCC1 and BTB domain-conta no no 0.629 0.357 0.272 1e-08
Q15034 1050 Probable E3 ubiquitin-pro no no 0.581 0.173 0.241 2e-08
Q6NXM2 531 RCC1 and BTB domain-conta no no 0.760 0.448 0.239 7e-08
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 35/216 (16%)

Query: 55  VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVK 108
           +   G   ++A      + +WG  +D GQ       HG+  E  P PT+ S      +V 
Sbjct: 19  IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVS 71

Query: 109 AAAGWAHCVSVTEAG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE---- 163
              G  H V+ +++G EVY+WGW           DFG  G    +S+   + LP +    
Sbjct: 72  VTCGADHTVAYSQSGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHG 119

Query: 164 ----QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA 219
               Q    D       ++    S  R ++     GD   +L P  +    G++I  VAA
Sbjct: 120 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 179

Query: 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRI-KMVP 254
           G  HT  +++ G ++GWG+G  G LGLG R  ++VP
Sbjct: 180 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP 215
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q6NXM2|RCBT1_MOUSE RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
255586057 478 Ran GTPase binding protein, putative [Ri 0.948 0.621 0.653 1e-114
449448608 485 PREDICTED: probable E3 ubiquitin-protein 0.977 0.630 0.613 1e-108
449519078 472 PREDICTED: probable E3 ubiquitin-protein 0.936 0.620 0.632 1e-107
356523185 528 PREDICTED: LOW QUALITY PROTEIN: probable 0.913 0.541 0.643 1e-107
356566559 525 PREDICTED: probable E3 ubiquitin-protein 0.907 0.540 0.653 1e-107
359482088 514 PREDICTED: probable E3 ubiquitin-protein 0.961 0.585 0.635 1e-106
255566472 476 Serine/threonine-protein kinase Nek8, pu 0.964 0.634 0.613 1e-104
356539897 480 PREDICTED: probable E3 ubiquitin-protein 0.971 0.633 0.609 1e-103
224138854 467 predicted protein [Populus trichocarpa] 0.926 0.620 0.635 1e-103
297740323 478 unnamed protein product [Vitis vinifera] 0.900 0.589 0.647 1e-103
>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/329 (65%), Positives = 246/329 (74%), Gaps = 32/329 (9%)

Query: 1   MEMNGSKREENEKMEEC-KETVVYMWGYLPGTSPEKSPILSPIPARLCGG---DSWKDVC 56
           M +NG+  EE+ KMEEC K T VYM GYLPG SPEKSPILSPI   +  G   DSWKDVC
Sbjct: 1   MAINGNGEEEDVKMEECCKVTAVYMCGYLPGISPEKSPILSPIQVPISDGGGFDSWKDVC 60

Query: 57  GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
            GGCGFA+A S SG LITWGS D+EGQSYLTSGKHGE PEPFPLP EASVVKAAAGWAHC
Sbjct: 61  SGGCGFAMAISGSGNLITWGSTDEEGQSYLTSGKHGEIPEPFPLPCEASVVKAAAGWAHC 120

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS-------- 168
           VSVTE GEV+TWGW+ECVPS K+          Q+D+TGKQ+AL   +   S        
Sbjct: 121 VSVTETGEVFTWGWKECVPSVKI---------IQRDNTGKQNALLQTEKVSSRSEGSSLT 171

Query: 169 --------DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAG 220
                    KR G+E+VKRR+ S  +E+ E+  SGDEFFT+ P +VTL PGV+IT VAAG
Sbjct: 172 RGTVLNSDSKRTGDEIVKRRRVSPTKEDFESSPSGDEFFTVLPLMVTLAPGVRITNVAAG 231

Query: 221 GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSV 280
           GRHTL LSDMGQVWGWGYGGEGQLGLGSRIKMV +PHLIPC++ +ASGKDR L+V QG++
Sbjct: 232 GRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIDASASGKDRSLIVHQGNL 291

Query: 281 NSSGKAGR---SYVKEIACGGRHSAVVTD 306
             S +A     SYVKEIACGGRHSA+VTD
Sbjct: 292 TPSAQASTFPGSYVKEIACGGRHSAIVTD 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449448608|ref|XP_004142058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519078|ref|XP_004166562.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523185|ref|XP_003530222.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC3-like [Glycine max] Back     alignment and taxonomy information
>gi|356566559|ref|XP_003551498.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|359482088|ref|XP_002271900.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566472|ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] gi|223536498|gb|EEF38145.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539897|ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|224138854|ref|XP_002322918.1| predicted protein [Populus trichocarpa] gi|222867548|gb|EEF04679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297740323|emb|CBI30505.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
TAIR|locus:2099986 488 AT3G55580 [Arabidopsis thalian 0.907 0.581 0.515 1.1e-80
TAIR|locus:2146142 396 AT5G16040 "AT5G16040" [Arabido 0.348 0.275 0.282 3.4e-07
TAIR|locus:2076889393 AT3G02510 "AT3G02510" [Arabido 0.316 0.251 0.321 6.6e-07
UNIPROTKB|E1B8U7377 RCCD1 "Uncharacterized protein 0.351 0.291 0.316 2.7e-06
UNIPROTKB|E2R5W9313 RCCD1 "Uncharacterized protein 0.258 0.258 0.355 5.4e-06
UNIPROTKB|O95199551 RCBTB2 "RCC1 and BTB domain-co 0.335 0.190 0.318 1.1e-05
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.338 0.240 0.292 1.7e-05
MGI|MGI:1917200551 Rcbtb2 "regulator of chromosom 0.335 0.190 0.309 1.9e-05
TAIR|locus:2159295445 RUG3 "RCC1/UVR8/GEF-like 3" [A 0.297 0.208 0.33 7.8e-05
UNIPROTKB|F1N7C1 1016 HERC6 "Uncharacterized protein 0.281 0.086 0.320 9.5e-05
TAIR|locus:2099986 AT3G55580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 765 (274.4 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 154/299 (51%), Positives = 194/299 (64%)

Query:    21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
             VVYMWGYLPG SP++SP++SP+  ++      SWKDV GGGCGFA+AT+ESGKLITWGS 
Sbjct:    32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
             DD GQSY+TSGKHGETPEPFPLP E  V KA AGWAHCV+VTE  +VYTWGWREC+P+ +
Sbjct:    92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151

Query:   139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
             V          R+   S       S GK+S+  T      + R G E  K+R+ S +++ 
Sbjct:   152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209

Query:   189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXX 247
             +EN +  D    +  PCLV+L PGV+I  VAAGGRHTL LSD+                 
Sbjct:   210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLG 269

Query:   248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTD 306
             SR+++V +PH IPC+E ++ GK     V   SV   G+   SYVK+IACGGRHSAV+TD
Sbjct:   270 SRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITD 328
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8U7 RCCD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R5W9 RCCD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95199 RCBTB2 "RCC1 and BTB domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1917200 Rcbtb2 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7C1 HERC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021372001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (485 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-09
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-09
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-07
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-06
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-06
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-06
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 8e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 59/262 (22%), Positives = 96/262 (36%), Gaps = 43/262 (16%)

Query: 59  GCGFALATSESGKLITWGSADDEGQ-SYLTSGKHGE---TPEPFPLPTEASVVKAAAGWA 114
           G    +A +  GK+  WGS + +GQ    TS +        +PF +    ++   A G  
Sbjct: 239 GADHLIALTNEGKVYGWGS-NQKGQLGRPTSERLKLVVLVGDPFAIR---NIKYVACGKD 294

Query: 115 HCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKR--- 171
           H +++ E GE+Y WG             FG  G+      G  +  P  +   S      
Sbjct: 295 HSLALDEDGEIYAWGVNI----------FGQLGAGSDGEIGALTTKPNYKQLLSGVTICS 344

Query: 172 --AGEE---VVKRRKT--SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT 224
             AGE    ++++  T  +  R +       +E          L+  +K+ +VA G  H 
Sbjct: 345 ISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHN 404

Query: 225 LILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSG 284
           +  +D G V+ WG+G  G LG G +   V  P LI   +   SG +    +  G  N   
Sbjct: 405 IARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR--QPLLSGHNI---ILAGYGNQF- 458

Query: 285 KAGRSYVKEIACGGRHSAVVTD 306
                             V+  
Sbjct: 459 ---------SVIEETMDTVIEL 471

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
COG5184 476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427 443 consensus Uncharacterized conserved protein, conta 99.97
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.81
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.79
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.36
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.3
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.23
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.23
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.07
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.99
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.4
KOG3669 705 consensus Uncharacterized conserved protein, conta 89.64
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 88.3
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 85.84
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 85.68
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 84.96
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-35  Score=255.48  Aligned_cols=227  Identities=23%  Similarity=0.300  Sum_probs=175.9

Q ss_pred             ceeeeeCCcEEEecCC-CCCCCCCCCCceeeE--eeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCC
Q 021363           13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIP--ARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG   89 (313)
Q Consensus        13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~p--v~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~   89 (313)
                      -+.++-+|+.|.||.| .||||++.......|  |+-+...+|++.++ |.+|+++||++|+||.||.| .+||||+++.
T Consensus        70 ~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~GQlGlgn~  147 (443)
T KOG1427|consen   70 CVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYGQLGLGNA  147 (443)
T ss_pred             EEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-cccccccccc
Confidence            4677889999999999 899999976554445  44445677888887 99999999999999999999 8999999987


Q ss_pred             CCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCCC
Q 021363           90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD  169 (313)
Q Consensus        90 ~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (313)
                      +.....++.+-....+|..|+||.++++.|+..+.+.++|-..|||||..+.+.                          
T Consensus       148 ~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~--------------------------  201 (443)
T KOG1427|consen  148 KNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNE--------------------------  201 (443)
T ss_pred             ccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchh--------------------------
Confidence            665544444444567899999999999999999999999999999999987541                          


Q ss_pred             ccccceeeeceeeeccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCC
Q 021363          170 KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR  249 (313)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~  249 (313)
                           ...+...+.++-           ..++.|..|..+.+..|++++||.+|++|++++++||.||.+.||+||+-.+
T Consensus       202 -----~~~~~~~~~~~~-----------e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEq  265 (443)
T KOG1427|consen  202 -----FNMKDSSVRLAY-----------EAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQ  265 (443)
T ss_pred             -----hccccccceeee-----------ecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccc
Confidence                 111111111100           1245677788889999999999999999999999999999999999999875


Q ss_pred             CCCcccCeeeccccc-------ccCCCCCcceeec-cccccCC
Q 021363          250 IKMVPTPHLIPCLEH-------AASGKDRPLLVRQ-GSVNSSG  284 (313)
Q Consensus       250 ~~~~~~p~~i~~~~~-------~~~g~~~~~~~~~-~~~~~~~  284 (313)
                       +....|++|+.|..       +.+|+..+....- |+|.+|+
T Consensus       266 -KDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g  307 (443)
T KOG1427|consen  266 -KDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWG  307 (443)
T ss_pred             -hhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEee
Confidence             56677888876654       5566666655433 4544444

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-05
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-04
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-04
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 6e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-04
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-04
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 8e-04
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 60  CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
           CG  F++A ++SG + TWG  D     +  S  H   P          V+  A G  HCV
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330
Query: 118 SVTEAGEVYTWG 129
             TE GEVYTWG
Sbjct: 331 CCTEDGEVYTWG 342
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-30
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-28
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-24
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-04
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-29
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 8e-20
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-18
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-14
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-11
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 8e-09
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-06
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-27
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 5e-18
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-16
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-13
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-11
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-11
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-08
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-04
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-18
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-17
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-17
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-16
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-12
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-11
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-11
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-10
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-10
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-08
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-18
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-17
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-17
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-17
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-15
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-14
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-12
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-11
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-09
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-08
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-07
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-13
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-11
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-09
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-09
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-05
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-04
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-04
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
 Score =  116 bits (293), Expect = 8e-30
 Identities = 59/301 (19%), Positives = 97/301 (32%), Gaps = 66/301 (21%)

Query: 43  PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ---SYLTSGKHGETPE--P 97
                      +           + +   +  WG+     +     L   K  + P   P
Sbjct: 3   HHHHHHMSHIINAQEDY-KHMYLSVQPLDIFCWGT-GSMCELGLGPLAKNKEVKRPRLNP 60

Query: 98  FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQ 157
           F    EA ++  A G  H +++ E   V++WG            D G+ G   +D++  +
Sbjct: 61  FLPRDEAKIISFAVGGMHTLALDEESNVWSWGC----------NDVGALG---RDTSNAK 107

Query: 158 SALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKV 217
             L    A  S      ++ +   T +       P   +              G K+ ++
Sbjct: 108 EQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE--------------GHKVVQL 153

Query: 218 AAGGRHTLILSDMGQVWGWGYG--GEGQLGLGS-RIKMVPTPHLIPCLE-----HAASGK 269
           AA    +  L   G+V+ WG     EG LG    +IK+  TP  +P          A GK
Sbjct: 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK 213

Query: 270 DRPLLVRQ-GSV-----NSSGKAGR------------------SYVKEIACGGRHSAVVT 305
           D  L + + G V         + GR                   +VK IA G  H   +T
Sbjct: 214 DHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALT 273

Query: 306 D 306
            
Sbjct: 274 K 274
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.64
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.03
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 82.8
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 82.39
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 81.46
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=2.3e-46  Score=352.38  Aligned_cols=292  Identities=24%  Similarity=0.328  Sum_probs=229.8

Q ss_pred             ceeeeeCCcEEEecCC-CCCCCCCCCCceeeEeeec--CCCCceEEeecCCceEEEEeCCC-CEEEecCCCCCCCccccC
Q 021363           13 KMEECKETVVYMWGYL-PGTSPEKSPILSPIPARLC--GGDSWKDVCGGGCGFALATSESG-KLITWGSADDEGQSYLTS   88 (313)
Q Consensus        13 ~~~l~~~g~vy~wG~n-~G~lg~~~~~~~p~pv~~~--~~~~i~~i~~~g~~h~~~lt~~G-~vy~wG~n~~~Gqlg~~~   88 (313)
                      .++|+++|+||+||.| .||||++.....+.|.++.  .+.+|++|++ |..|+++|+++| +||+||.| ++||||.++
T Consensus        28 s~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~-G~~ht~al~~~gg~v~~wG~n-~~GqLG~g~  105 (406)
T 4d9s_A           28 SVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC-GADHTVAYSQSGMEVYSWGWG-DFGRLGHGN  105 (406)
T ss_dssp             EEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTTTEEEEEECC-GGGTTCSSS
T ss_pred             EEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe-CcceEEEEECCCCEEEEEcCC-CCcCCCCCC
Confidence            6889999999999999 8999998776666666554  5678999999 778999999885 99999999 899999988


Q ss_pred             CCCCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecCCCCCCCCcccccCCCCCccccCCCCCCCCCCccCCCCC
Q 021363           89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS  168 (313)
Q Consensus        89 ~~~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (313)
                      ......|.+++.+...+|++|+||.+|+++|+++|+||+||.|.+||||.........   +..... .......++...
T Consensus       106 ~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~---p~~v~~-~~~~~i~~va~G  181 (406)
T 4d9s_A          106 SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQA-FEGIRIKMVAAG  181 (406)
T ss_dssp             CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEE---EEECGG-GTTCCEEEEEEC
T ss_pred             CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCccc---ceEecc-cCCCcEEEEecC
Confidence            8777788888888888999999999999999999999999999999999754321100   000000 000000111111


Q ss_pred             Cccccceeeeceee-eccCCCCCCCCCCCcceeecceeeecCCCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCC
Q 021363          169 DKRAGEEVVKRRKT-SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG  247 (313)
Q Consensus       169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g  247 (313)
                       ......+++...+ .|+.+.......++......|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus       182 -~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g  260 (406)
T 4d9s_A          182 -AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG  260 (406)
T ss_dssp             -SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSS
T ss_pred             -CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCC
Confidence             1122234555544 56666667777777778888999988888899999999999999999999999999999999998


Q ss_pred             CCCCCcccCeeecccc-----cccCCCCCcceeec-cccccCCCCC----------------------CccEEEEEeCCc
Q 021363          248 SRIKMVPTPHLIPCLE-----HAASGKDRPLLVRQ-GSVNSSGKAG----------------------RSYVKEIACGGR  299 (313)
Q Consensus       248 ~~~~~~~~p~~i~~~~-----~~~~g~~~~~~~~~-~~~~~~~~~~----------------------~~~i~~I~~G~~  299 (313)
                      .. .....|++++.+.     .++||..|+++|.. |+++.|+...                      ..+|++|+||.+
T Consensus       261 ~~-~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~  339 (406)
T 4d9s_A          261 DL-EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR  339 (406)
T ss_dssp             SC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSS
T ss_pred             CC-cCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCC
Confidence            75 5667788887544     48999999999987 8887766321                      157999999999


Q ss_pred             eEEEEecCCceee
Q 021363          300 HSAVVTDMSYPIA  312 (313)
Q Consensus       300 ~s~alt~~G~vya  312 (313)
                      |++||+++|+||+
T Consensus       340 hs~alt~~G~v~~  352 (406)
T 4d9s_A          340 HTLAVTERNNVFA  352 (406)
T ss_dssp             EEEEEETTSCEEE
T ss_pred             eEEEEeCCCCEEE
Confidence            9999999999997
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-12
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-09
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-07
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-05
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-06
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 1e-13
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 14/243 (5%)

Query: 63  ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
              ++E G ++T G   D GQ  L      E  +P  +     VV+A AG  H V ++++
Sbjct: 8   RSHSTEPGLVLTLGQ-GDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182
           G+VY++G  +      + RD    GS       +      + +      A      R   
Sbjct: 66  GQVYSFGCNDE---GALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFL 122

Query: 183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242
             +  ++       E    S   V +   V + KVA+G  H ++L+  G ++  G G +G
Sbjct: 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182

Query: 243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSA 302
           QLG    +                 G +R L+ +   + S G  G    ++  CG   + 
Sbjct: 183 QLGRVPELFANRGGR---------QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF 233

Query: 303 VVT 305
            ++
Sbjct: 234 AIS 236
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 99.97
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.97
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.93
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.13
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 92.54
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-39  Score=300.26  Aligned_cols=295  Identities=20%  Similarity=0.243  Sum_probs=197.5

Q ss_pred             ceeeeeCCcEEEecCC-CCCCCCCCC-CceeeEeeecCCCCceEEeecCCceEEEEeCCCCEEEecCCCCCCCccccCCC
Q 021363           13 KMEECKETVVYMWGYL-PGTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK   90 (313)
Q Consensus        13 ~~~l~~~g~vy~wG~n-~G~lg~~~~-~~~p~pv~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gqlg~~~~~   90 (313)
                      ...++.+|+||+||.| .||||++.. ...+.|..++...+|++|++ |..|+++|+++|+||+||.| ++||||+++..
T Consensus         8 ~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~-G~~h~~al~~~G~vy~wG~n-~~GQLG~g~~~   85 (401)
T d1a12a_           8 RSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA-GGMHTVCLSKSGQVYSFGCN-DEGALGRDTSV   85 (401)
T ss_dssp             TTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEE-CSSEEEEEETTSCEEEEECC-TTSTTCSCCCS
T ss_pred             EEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEe-CCCEEEEEeCCCEEEEEeCC-CCCCCCccccc
Confidence            4578999999999999 899999755 35677777777778999999 77899999999999999999 89999998776


Q ss_pred             CCCCCcccCCCCCCcEEEEeecCceeEEEecCCcEEEecC----------------------------------------
Q 021363           91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW----------------------------------------  130 (313)
Q Consensus        91 ~~~~p~~i~~~~~~~i~~Is~G~~hs~~lt~~G~vy~wG~----------------------------------------  130 (313)
                      ....|.+.......+|++|+||..|+++++++|+||+||.                                        
T Consensus        86 ~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~  165 (401)
T d1a12a_          86 EGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLV  165 (401)
T ss_dssp             TTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEE
T ss_pred             ccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEeccccee
Confidence            6655555555555556666666666666666665555554                                        


Q ss_pred             -------------CCCCCCCcccccCCCCCccc---cCCCCCCCCCCc----cCCCCCCcc----ccceeeeceee-ecc
Q 021363          131 -------------RECVPSAKVTRDFGSAGSFQ---KDSTGKQSALPT----EQAPPSDKR----AGEEVVKRRKT-SSA  185 (313)
Q Consensus       131 -------------n~~gqlG~~~~~~~~~~~~~---~~~~g~~~~~~~----~~~~~~~~~----~~~~~~~~~~~-~~~  185 (313)
                                   |.+||||.............   ............    .........    ....++....+ .|.
T Consensus       166 ~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g  245 (401)
T d1a12a_         166 MLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFG  245 (401)
T ss_dssp             EEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEE
T ss_pred             eeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeec
Confidence                         44444443322111110000   000000000000    000000011    11123333333 344


Q ss_pred             CCCCCCCCCCCcceeecceeeecC--CCCcEEEEeeCCCeEEEEeCCCCEEEEeCCCCcccCCCCCCCCcccCeeeccc-
Q 021363          186 REESENPASGDEFFTLSPCLVTLN--PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL-  262 (313)
Q Consensus       186 ~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~I~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~~p~~i~~~-  262 (313)
                      .+...............|..+..+  ....|+.|++|..|+++|+++|+||+||.|.+||||.+........|++|+.+ 
T Consensus       246 ~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~  325 (401)
T d1a12a_         246 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP  325 (401)
T ss_dssp             CCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS
T ss_pred             ccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCC
Confidence            444444444444444555554433  23579999999999999999999999999999999999876777789888765 


Q ss_pred             --ccccCCCCCcceeec-cccccCCC-----CC-------------------CccEEEEEeCCceEEEEecCCc
Q 021363          263 --EHAASGKDRPLLVRQ-GSVNSSGK-----AG-------------------RSYVKEIACGGRHSAVVTDMSY  309 (313)
Q Consensus       263 --~~~~~g~~~~~~~~~-~~~~~~~~-----~~-------------------~~~i~~I~~G~~~s~alt~~G~  309 (313)
                        ..++||..|++++.. |++++||.     +.                   +.+|++|+||.+||++|+++|+
T Consensus       326 ~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         326 AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEECCc
Confidence              448999999999977 78877653     21                   1469999999999999999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure