Citrus Sinensis ID: 021388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV
Secondary Structure (PSIPRED)
ccccEEEEEccccHHHHHHHHcccEEEEccccccHHHHHHHHcccccEEEEcccccccHHHHHHccccEEEEEEcccccHHcHHHHHHcccEEccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHccEEEEEcccccHHcccccHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccHHHHHHHHHcccEEEEccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccEEEEcccccEEEEEcccHHHHHHHHHHHHcccEEEEEcHHHHHHcccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHcccccccccEc
Coil and Loop (DISEMBL)
mesigvlmacpmntYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVgnatagadAELIDalpkleivssfsvgldkvdmvkckekgvrvtntpdvltdDVADLAIGLMLAVLRRLCESdryvrsgkwkkgdyklttkftgktvgiigLGRIGMAVAKRAEafscpinyysrtekpnlkykyyPSVVELASNCHIlvvacplteetRHIINREVidalgpkgvlinigrgphvdERELVSALVEGrlggagldvfenephvpeelfgLENVvlmphvgsgtveTRKTMADLVLGNLeahflnkplltpvv
Flexible Loop (DISEMBL)
mesigvlmacpmNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFsvgldkvdmvkckekgvrvtntpdvltddvADLAIGLMLAVLRRLcesdryvrsgkwkkgdyklttkftgktvgiigLGRIGMAVAKRAEAFscpinyysrtekpnlKYKYYPSVVELASNCHILVVACPLTEETRHIINRevidalgpkGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNleahflnkplltpvv
Low Complexity Region (SEG)
MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV
Disordered region (IsUnstruct)
***IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL*****
Disordered Region (DISOPRED)
*ESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV
Disordered Region (DISEMBL)
MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV
Disordered Region (DISPRO)
*ESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9CA90	313	Glyoxylate/hydroxypyruvat	yes	no	1.0	1.0	0.785	1e-143
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.964	0.934	0.481	1e-80
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.846	0.793	0.452	8e-60
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.817	0.761	0.441	5e-59
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.846	0.795	0.441	2e-54
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.846	0.800	0.450	1e-53
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.811	0.749	0.435	7e-53
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.837	0.784	0.454	2e-52
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.811	0.765	0.432	5e-49
O58320	334	Glyoxylate reductase OS=P	yes	no	0.846	0.793	0.456	2e-47

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  506 bits (1304), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 283/313 (90%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           MESIGVLM CPM++YLE ELE+RFNL +FWT  +K+  L+  +N+IRAVVGNA+AGADA+
Sbjct: 1   MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQ 60

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LI  LP LEIVSSFSVGLDK+D+ KCKEKG+RVTNTPDVLT+DVADLAIGL+LA+LRRLC
Sbjct: 61  LISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLC 120

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E DRYVRSGKWK+G+++LTTKF+GK+VGIIGLGRIG A+AKRAEAFSCPINYYSRT KP+
Sbjct: 121 ECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPD 180

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
           + YKYYP+VV+LA N  ILVVACPLTE+TRHI++R+V+DALG KGVLINIGRGPHVDE+E
Sbjct: 181 VAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQE 240

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           L+ AL EGRLGGA LDVFE EPHVPEELFGLENVVL+PHVGSGTVETR  MADLV+GNLE
Sbjct: 241 LIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLE 300

Query: 301 AHFLNKPLLTPVV 313
           AHF  K LLTPVV
Sbjct: 301 AHFSGKSLLTPVV 313

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 207/305 (67%), Gaps = 3/305 (0%)

Query: 11  PMNTYLEQELERRFNLFKFWTVSDKT--QFLKAQQNNIRAVVGNATAGADAELIDALPKL 68
           P  T++++ L R F      T S ++   F     ++ RA V +       EL+  LP L
Sbjct: 16  PSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVTDELLSHLPSL 75

Query: 69  EIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS 128
           +I+   SVG+D +D+  CK +G+ +TN  +  +DDVAD A+GL+++VLRR+  +DRYVRS
Sbjct: 76  QILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAADRYVRS 135

Query: 129 GKWKK-GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYP 187
           G W K GD++L +K +GK VGI+GLG IG  VAKR E+F C I+Y SR++K +  Y+YY 
Sbjct: 136 GNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSSPYRYYS 195

Query: 188 SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247
            ++ LA N  +LV+ C LT+ET HI+NREV++ LG  GV+IN+GRG  +DE+E+V  LV+
Sbjct: 196 DILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEMVKCLVD 255

Query: 248 GRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307
           G +GGAGLDVFENEP VP+ELFGL+NVVL PH    T  +   +A + L NL+A F N+P
Sbjct: 256 GVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRP 315

Query: 308 LLTPV 312
           LL+PV
Sbjct: 316 LLSPV 320

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  231 bits (588), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 124/274 (45%), Positives = 174/274 (63%), Gaps = 9/274 (3%)

Query: 37  QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
           + L  +  ++ A+V   +   DAE+ DA P+L+IV++++VG D +D+ +  + GV +TNT
Sbjct: 37  EVLLEKVRDVDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNT 96

Query: 97  PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK------LTTKFTGKTVGII 150
           PDVLT+  AD+A  L+LA  RRL E+D++VRSG+WKK          L     G+T+GI+
Sbjct: 97  PDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIV 156

Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
           G GRIG A+A+RA+ F   I Y SRT KP ++ +    +  + EL      +V+  PLT+
Sbjct: 157 GFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLTK 216

Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
           ET H+IN E +  + P  +L+NI RG  VD   LV AL EG + GAGLDVFE EP+  EE
Sbjct: 217 ETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEE 276

Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
           LF L+NVVL PH+GS T   R+ MA+LV  NL A
Sbjct: 277 LFSLDNVVLAPHIGSATYGAREGMAELVARNLIA 310

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/267 (44%), Positives = 171/267 (64%), Gaps = 11/267 (4%)

Query: 45  NIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDV 104
           ++ A+V   +   D E+ +  P+L IV++++VG D +D+ +   +G+ VTNTPDVLT+  
Sbjct: 45  DVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNAT 104

Query: 105 ADLAIGLMLAVLRRLCESDRYVRSGKWKKG------DYKLTTKFTGKTVGIIGLGRIGMA 158
           AD A  L+LA  R + + D++VRSG+WK+        + L  +  GKT+GI+G GRIG A
Sbjct: 105 ADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQA 164

Query: 159 VAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214
           +A+RA+ F+  I YYSRT K      L  +Y P + E+      +++A PLT+ET ++IN
Sbjct: 165 IARRAKGFNMRILYYSRTRKSQAEKELGAEYRP-LEEVLKESDFVILAVPLTKETMYMIN 223

Query: 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274
            E +  + P  +L+NI RG  VD + L+ AL EG + GAGLDVFE EP+  EELF L+NV
Sbjct: 224 EERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFSLDNV 283

Query: 275 VLMPHVGSGTVETRKTMADLVLGNLEA 301
           VL PH+GS T E R+ MA+LV  NL A
Sbjct: 284 VLTPHIGSATFEAREAMAELVARNLIA 310

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 173/274 (63%), Gaps = 9/274 (3%)

Query: 37  QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
           + L  +  ++ A+V   +   D+E+ DA P+L IV++++VG D +D+ +   +G+ VTNT
Sbjct: 37  EVLLKKVRDVDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNT 96

Query: 97  PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG------DYKLTTKFTGKTVGII 150
           PDVLTD  AD A  L+LA  RRL E+D + RSG+WK+        + L     GKT+GI+
Sbjct: 97  PDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIV 156

Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
           G GRIG AVA+RA  F   I YYSR+ KP  + +    + S+ +L      +V+A PLT+
Sbjct: 157 GFGRIGQAVARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTK 216

Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
           ET+++IN E +  +    +L+NI RG  VD + L+ AL EG + GAGLDV+E EP+  EE
Sbjct: 217 ETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEE 276

Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
           LF L+NVVL PH+GS T   R+ MA+LV  NL A
Sbjct: 277 LFSLKNVVLAPHIGSATYGAREGMAELVARNLIA 310

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/282 (45%), Positives = 172/282 (60%), Gaps = 17/282 (6%)

Query: 46  IRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
           + A+V   T   D EL++  PKL+I++ ++VG D +D+ +  ++G+ VTNTP VLTD  A
Sbjct: 46  VDALVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATA 105

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK------LTTKFTGKTVGIIGLGRIGMAV 159
           DLA  L+LAV RR+ E+D +VRSG+WKK +        L     GKT+GI+G GRIG A+
Sbjct: 106 DLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQAL 165

Query: 160 AKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINRE 216
           AKRA+ F   I YYSRT KP  + +    Y     L      + +  PLT+ET H+I  +
Sbjct: 166 AKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEK 225

Query: 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVL 276
            +  + P  +LIN  RG  VD   L+ AL EG + GAGLDVFE EP+  EELF L+NVVL
Sbjct: 226 ELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVL 285

Query: 277 MPHVGSGTVETRKTMADLVLGNLEA--------HFLNKPLLT 310
            PH+GS T E R+ MA+LV  NL A        + +NK +LT
Sbjct: 286 APHIGSATHEAREGMAELVAKNLIAFAKGEIPPNLVNKDVLT 327

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/271 (43%), Positives = 167/271 (61%), Gaps = 17/271 (6%)

Query: 45  NIR---AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLT 101
           NIR   A++   T   DAE++DA P L+++S++SVG D +D+ +  ++G+ VT+TP VLT
Sbjct: 44  NIRDKDALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLT 103

Query: 102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLT-TKFTGKTVGIIGLGRIGMA 158
           D VA+  +GL+LAV RR+ E+D+ +R+G+W K    Y LT  +  GKT+G++GLGRIG+A
Sbjct: 104 DAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVA 163

Query: 159 VAKRAEAFSCPINYYS-------RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRH 211
            AKR  +F   I YY         T  PN+++    +++E      I+ +  PLT+ET H
Sbjct: 164 TAKRLSSFDVKILYYDIERRWDVETVIPNMEFTDLDTLLE---KSDIVSIHVPLTKETYH 220

Query: 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-LFG 270
           +IN E +  +     LIN  RGP VD   LV AL EG + GA LDVFE EP  P   L  
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTK 280

Query: 271 LENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
            +NVVL PH+ S T+E R+ MA+L   NL A
Sbjct: 281 FDNVVLAPHIASATIEARQRMAELAARNLIA 311

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/273 (45%), Positives = 168/273 (61%), Gaps = 11/273 (4%)

Query: 37  QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
           + L  +  ++ A+V   +   D E+ D  P+L IV++++VG D VD+ +   +G+ VTNT
Sbjct: 37  EVLLEKVRDVDALVTMLSERIDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNT 96

Query: 97  PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK------LTTKFTGKTVGII 150
           PDVLT+  AD A  L+LA  RRL E+D + RSG+WK+          L     GKT+GII
Sbjct: 97  PDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGII 156

Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLT 206
           G GRIG AVA+RA+ F   I YYSRT KP     LK ++ P + EL      +V+A PLT
Sbjct: 157 GFGRIGQAVARRAKGFGMRILYYSRTRKPEAEEELKAEFKP-LEELLKESDFVVLAVPLT 215

Query: 207 EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE 266
           +ET H+I    +  + P  +L+NI RG  VD   L+ AL EG + GAGLDVFE EP+  E
Sbjct: 216 KETYHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNE 275

Query: 267 ELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           ELF L+NV+L PH+GS T   R+ MA+LV  NL
Sbjct: 276 ELFSLKNVILAPHIGSATFGAREGMAELVARNL 308

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 158/261 (60%), Gaps = 7/261 (2%)

Query: 48  AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADL 107
           A+V   T   DAE+ +A PKL IV+ ++VG D +D+ +  ++G+ VTNTP VLT+  AD 
Sbjct: 48  ALVSLLTDPIDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADF 107

Query: 108 AIGLMLAVLRRLCESDRYVRSGKWKKGDYK---LTTKFTGKTVGIIGLGRIGMAVAKRAE 164
           A  L++A  RR+ E+DRYVR GKWK   +    L     G+T+GI+G+GRIG AVA+RA+
Sbjct: 108 AFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAK 167

Query: 165 AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDAL 221
            F   I YY    + + + +    Y  + +L      + +  PLTEET H+I  E +  +
Sbjct: 168 GFGMRILYYDSIRREDFEKELGVEYVPLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRM 227

Query: 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHV 280
               +L+N  RG  VD++ L  AL EG + GAGLDVFE EP  P++ L  LENVVL PH 
Sbjct: 228 KRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHA 287

Query: 281 GSGTVETRKTMADLVLGNLEA 301
            S + ETR  MA++V  NL A
Sbjct: 288 ASASHETRSRMAEMVAENLIA 308

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=gyaR PE=1 SV=2

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 9/274 (3%)

Query: 37  QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
           + L  +   + A+V   +   D E+ +  PKL IV++++VG D +D+ +  ++G+ VTNT
Sbjct: 37  EILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNT 96

Query: 97  PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------TGKTVGII 150
           PDVLTD  ADLA  L+LA  R + + DR+VRSG+WKK       K+       GKT+GII
Sbjct: 97  PDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII 156

Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
           GLGRIG A+AKRA+ F+  I YYSRT K  ++ +    +  + +L      +V+A PLT 
Sbjct: 157 GLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTR 216

Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
           ET H+IN E +  +    +LINI RG  VD   LV AL EG + GAGLDVFE EP+  EE
Sbjct: 217 ETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEE 276

Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
           LF L+NVVL PH+GS +   R+ MA+LV  NL A
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA 310

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
255549954	314	glycerate dehydrogenase, putative [Ricin	1.0	0.996	0.824	1e-151
449448024	346	PREDICTED: glyoxylate/hydroxypyruvate re	1.0	0.904	0.814	1e-150
224073961	314	predicted protein [Populus trichocarpa]	1.0	0.996	0.812	1e-149
449519625	346	PREDICTED: LOW QUALITY PROTEIN: glyoxyla	1.0	0.904	0.811	1e-149
448278786	313	hydroxyphenylpyruvate reductase [Salvia	1.0	1.0	0.811	1e-148
62816284	313	hydroxyphenylpyruvate reductase (HPPR) [	1.0	1.0	0.814	1e-147
212374928	333	Chain A, Structure Of Hydroxyphenylpyruv	1.0	0.939	0.814	1e-147
72256935	313	putative hydroxyphenylpyruvate reductase	1.0	1.0	0.792	1e-146
150248227	313	putative hydroxyphenylpyruvate reductase	1.0	1.0	0.789	1e-146
83314046	313	putative hydroxyphenylpyruvate reductase	1.0	1.0	0.785	1e-145

>gi|255549954|ref|XP_002516028.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223544933|gb|EEF46448.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/314 (82%), Positives = 291/314 (92%), Gaps = 1/314 (0%)

Query: 1   MESIGVLMACP-MNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADA 59
           MES+GVLM CP +  YL ++LE+RF L++F  V DKTQFL + +N+IRAVVGNA  GADA
Sbjct: 1   MESVGVLMTCPPIYPYLIEQLEKRFTLYQFQNVPDKTQFLNSHKNSIRAVVGNAGFGADA 60

Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ELID LPKLEIVSS+SVGLDKVD+ KCK KG+RVTNTPDVLTDDVADLAIGLMLAVLRRL
Sbjct: 61  ELIDQLPKLEIVSSYSVGLDKVDLAKCKGKGIRVTNTPDVLTDDVADLAIGLMLAVLRRL 120

Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
           CESDRYVRSG+W+KGDYKLTTKFTGK+VGIIGLGRIGMA+AKRAEAFSCPI+Y++R+EKP
Sbjct: 121 CESDRYVRSGQWRKGDYKLTTKFTGKSVGIIGLGRIGMAIAKRAEAFSCPISYFARSEKP 180

Query: 180 NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER 239
           ++KYKYYPSVVELA+NC ILVVAC LTEET HI+NREVI+ALGPKGVLINIGRGPHVDE 
Sbjct: 181 DMKYKYYPSVVELAANCQILVVACALTEETHHIVNREVINALGPKGVLINIGRGPHVDEP 240

Query: 240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           ELVSAL+EGRLGGAGLDVFE+EP+VPE+LF LENVVL+PHVGSGTVETR  MADLV+GNL
Sbjct: 241 ELVSALLEGRLGGAGLDVFEDEPNVPEQLFSLENVVLLPHVGSGTVETRTAMADLVVGNL 300

Query: 300 EAHFLNKPLLTPVV 313
           EAHFLNKPLLTPVV
Sbjct: 301 EAHFLNKPLLTPVV 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448024|ref|XP_004141766.1| PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/313 (81%), Positives = 286/313 (91%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           MESIGVLM CPMN YLE EL++RFNL+KFW    KTQFL    N+IRAVVGNA+AGADA 
Sbjct: 34  MESIGVLMTCPMNAYLEGELQKRFNLYKFWQFPQKTQFLTEHCNSIRAVVGNASAGADAT 93

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVSSFSVGLDK+D+ KCKEKG+RVTNTPDVLT+DVADLAIGL++AVLRRLC
Sbjct: 94  LIDALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLC 153

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E DRYVRSGKWK G+YKLTTKF+GK+VGIIGLGRIG+A+AKRAEAF+CPI+YYSRT+K +
Sbjct: 154 ECDRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSRTKKED 213

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
            KYKYY +++ELASN  IL+VAC LT+ET HI+NREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 214 TKYKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPHVDEPE 273

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LV+ALVEGRLGGAGLDVFENEP VP+ELF LENVVL+PH+GSGTVETRK MADLVLGNLE
Sbjct: 274 LVAALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLVLGNLE 333

Query: 301 AHFLNKPLLTPVV 313
           +HF NKPLLTPVV
Sbjct: 334 SHFSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073961|ref|XP_002304205.1| predicted protein [Populus trichocarpa] gi|118488851|gb|ABK96235.1| unknown [Populus trichocarpa x Populus deltoides] gi|222841637|gb|EEE79184.1| predicted protein [Populus trichocarpa]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/314 (81%), Positives = 290/314 (92%), Gaps = 1/314 (0%)

Query: 1   MESIGVLMACP-MNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADA 59
           MESIGVLM CP  + YL ++LE+RF LFKF ++ DK  FL + + +IRAVVGNA+AGADA
Sbjct: 1   MESIGVLMTCPPFDPYLVEQLEKRFTLFKFHSIPDKAHFLNSNKASIRAVVGNASAGADA 60

Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           +LI  LP LEIVSSFSVGLDK+D+ KC+E+G+RVTNTPDVLTDDVADLAIGLMLAVLRRL
Sbjct: 61  QLIHQLPNLEIVSSFSVGLDKIDLAKCRERGIRVTNTPDVLTDDVADLAIGLMLAVLRRL 120

Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
           C SDRYVRSG+WK+GDYKLTTKFTGK+VGIIGLGRIG+A+AKRAEAFSCPI+Y++R EK 
Sbjct: 121 CPSDRYVRSGQWKRGDYKLTTKFTGKSVGIIGLGRIGLAIAKRAEAFSCPISYHTRAEKS 180

Query: 180 NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER 239
           ++KYKYYPSVVELA+NC ILVVAC LTEETRHIINREVI+ALGPKGVLINIGRGPHVDE 
Sbjct: 181 DVKYKYYPSVVELAANCQILVVACALTEETRHIINREVINALGPKGVLINIGRGPHVDEP 240

Query: 240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           ELVSALVEGRLGGAGLDVF++EP+VPEELFGLENVVL+PHVGSGT+ETRK MADLV+GNL
Sbjct: 241 ELVSALVEGRLGGAGLDVFQDEPNVPEELFGLENVVLLPHVGSGTMETRKEMADLVVGNL 300

Query: 300 EAHFLNKPLLTPVV 313
           EAHFLNKPLLTPV+
Sbjct: 301 EAHFLNKPLLTPVL 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519625|ref|XP_004166835.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/313 (81%), Positives = 285/313 (91%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           MESIGVLM CPMN YLE EL++RFNL+KFW    KTQFL    N+IRAVVGNA+AGADA 
Sbjct: 34  MESIGVLMTCPMNAYLEGELQKRFNLYKFWQFPQKTQFLTEHCNSIRAVVGNASAGADAT 93

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVSSFSVGLDK+D+ KCKEKG+RVTNTPDVLT+DVADLAIGL++AVLRRLC
Sbjct: 94  LIDALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLC 153

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E DRYVRSGKWK G+YKLTTKF+GK+VGIIGLGRIG+A+AKRAEAF+CPI+YYSRT+K +
Sbjct: 154 ECDRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSRTKKED 213

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
            KYKYY +++ELASN  IL+VAC LT+ET HI+NREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 214 TKYKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPHVDEPE 273

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LV+ALVEGRLGGAGLDVFENEP VP+ELF LENVVL+PH+GSGTVETRK MADLVL NLE
Sbjct: 274 LVAALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLVLXNLE 333

Query: 301 AHFLNKPLLTPVV 313
           +HF NKPLLTPVV
Sbjct: 334 SHFSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448278786|gb|AGE44245.1| hydroxyphenylpyruvate reductase [Salvia officinalis]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/313 (81%), Positives = 282/313 (90%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPMN+YLEQEL++RF L ++WT   +++FL  Q ++IRAVVGNA+AGADA 
Sbjct: 1   MEAIGVLMMCPMNSYLEQELDKRFKLLRYWTQPKQSEFLAQQADSIRAVVGNASAGADAA 60

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVS+FSVGLDKVD+VKCKEKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 61  LIDALPKLEIVSNFSVGLDKVDLVKCKEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 120

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPINYYSR++K N
Sbjct: 121 ECDKYVRRGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKAN 180

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY S+VELASN  ILVVAC LT ET HI+NREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 181 TNYTYYGSIVELASNSDILVVACALTPETTHIVNREVIDALGPKGVLINIGRGPHVDEAE 240

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLVLGNLE
Sbjct: 241 LVSALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKAMADLVLGNLE 300

Query: 301 AHFLNKPLLTPVV 313
           AHF +KPLLTPVV
Sbjct: 301 AHFSSKPLLTPVV 313

Source: Salvia officinalis

Species: Salvia officinalis

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62816284|emb|CAD47810.2| hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/313 (81%), Positives = 281/313 (89%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPM+TYLEQEL++RF LF++WT   +  FL  Q  +IRAVVGN+ AGADAE
Sbjct: 1   MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 60

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVSSFSVGLDKVD++KC+EKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 61  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 120

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPI+Y+SR++KPN
Sbjct: 121 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 180

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVACPLT ET HIINREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 181 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 240

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLV+GNLE
Sbjct: 241 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 300

Query: 301 AHFLNKPLLTPVV 313
           AHF  KPLLTPVV
Sbjct: 301 AHFSGKPLLTPVV 313

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212374928|pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu gi|212374938|pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blumei In Complex With Nadp+

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/313 (81%), Positives = 281/313 (89%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPM+TYLEQEL++RF LF++WT   +  FL  Q  +IRAVVGN+ AGADAE
Sbjct: 21  MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVSSFSVGLDKVD++KC+EKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPI+Y+SR++KPN
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVACPLT ET HIINREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLV+GNLE
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320

Query: 301 AHFLNKPLLTPVV 313
           AHF  KPLLTPVV
Sbjct: 321 AHFSGKPLLTPVV 333

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72256935|gb|AAZ67354.1| putative hydroxyphenylpyruvate reductase [Salvia miltiorrhiza]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 282/313 (90%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPMN+YLEQEL++RF LF++WT   + +FL  Q  +IRA+VGN+ +GADA+
Sbjct: 1   MEAIGVLMLCPMNSYLEQELDKRFKLFRYWTQPKQREFLAQQAESIRAIVGNSNSGADAD 60

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           +ID+LPKLEIVSSFSVGLD++D++KCKEKG+RVTNTPDVLT+DVADLAIGLMLAVLRR+C
Sbjct: 61  IIDSLPKLEIVSSFSVGLDRIDLLKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRIC 120

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVRSG WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPINYYSR++K N
Sbjct: 121 ECDKYVRSGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKAN 180

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVAC LT ET HI+NREV+DALGPKGVLINIGRGPHVDE E
Sbjct: 181 TNYTYYGSVVELASNSDILVVACALTPETTHIVNREVMDALGPKGVLINIGRGPHVDEAE 240

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLVLGNLE
Sbjct: 241 LVSALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKVMADLVLGNLE 300

Query: 301 AHFLNKPLLTPVV 313
           AHF +KPLLTPVV
Sbjct: 301 AHFSSKPLLTPVV 313

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150248227|gb|ABR67588.1| putative hydroxyphenylpyruvate reductase [Salvia miltiorrhiza]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 283/313 (90%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPMN+YLEQEL++RF LF++WT   + +FL  Q  +IRA+VGN+T+GADA+
Sbjct: 1   MEAIGVLMMCPMNSYLEQELDKRFKLFRYWTQPKQREFLAQQAESIRAIVGNSTSGADAD 60

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           +ID+LPKLEIVSSFSVGLD++D++KCKEKG+RVTNTPDVLT+DVADLAIGLMLAVLRR+C
Sbjct: 61  IIDSLPKLEIVSSFSVGLDRIDLLKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRIC 120

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVRSG WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPINYYSR++K N
Sbjct: 121 ECDKYVRSGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKAN 180

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVAC LT ET HI+NREV+DALGPKGVLINIGRGPHVDE E
Sbjct: 181 TNYTYYGSVVELASNSDILVVACALTPETTHIVNREVMDALGPKGVLINIGRGPHVDEAE 240

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALV+GRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK +ADLVLGNLE
Sbjct: 241 LVSALVKGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKVIADLVLGNLE 300

Query: 301 AHFLNKPLLTPVV 313
           AHF +KPLLTPVV
Sbjct: 301 AHFSSKPLLTPVV 313

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83314046|gb|ABC02200.1| putative hydroxyphenylpyruvate reductase [Salvia miltiorrhiza]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 282/313 (90%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPMN+YLEQEL++RF LF++WT   + +FL  Q  +IRA+VGN+T+GADA+
Sbjct: 1   MEAIGVLMMCPMNSYLEQELDKRFKLFRYWTQPKQREFLAQQAESIRAIVGNSTSGADAD 60

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           +ID+LPKLEIVSSFSVGLD++D++KCKEKG+RVTNTPDVLT+DVADLAIGLMLAVLRR+C
Sbjct: 61  IIDSLPKLEIVSSFSVGLDRIDLLKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRIC 120

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVRSG WK GD+KLTTKF+ K VGIIGLGRIG+AVA+RAEAF CPINYYSR++K N
Sbjct: 121 ECDKYVRSGAWKLGDFKLTTKFSVKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKAN 180

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVAC LT ET HI+NREV+DALGPKGVLINIGRGPHVDE E
Sbjct: 181 TNYTYYGSVVELASNSDILVVACALTPETTHIVNREVMDALGPKGVLINIGRGPHVDEAE 240

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALV+GRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK +ADLVLGNLE
Sbjct: 241 LVSALVKGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKVIADLVLGNLE 300

Query: 301 AHFLNKPLLTPVV 313
           AHF +KPLLTPVV
Sbjct: 301 AHFSSKPLLTPVV 313

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	1.0	1.0	0.785	3.8e-133
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.964	0.934	0.481	1.9e-74
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.929	0.860	0.445	4.5e-66
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.958	0.958	0.434	6.4e-60
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.811	0.783	0.410	2e-47
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.811	0.816	0.396	3.3e-47
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.811	0.816	0.396	3.3e-47
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.974	0.962	0.363	1.1e-46
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.811	0.783	0.401	1.4e-46
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.801	0.765	0.394	1e-45

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 246/313 (78%), Positives = 283/313 (90%)

Query:     1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
             MESIGVLM CPM++YLE ELE+RFNL +FWT  +K+  L+  +N+IRAVVGNA+AGADA+
Sbjct:     1 MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQ 60

Query:    61 LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
             LI  LP LEIVSSFSVGLDK+D+ KCKEKG+RVTNTPDVLT+DVADLAIGL+LA+LRRLC
Sbjct:    61 LISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLC 120

Query:   121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
             E DRYVRSGKWK+G+++LTTKF+GK+VGIIGLGRIG A+AKRAEAFSCPINYYSRT KP+
Sbjct:   121 ECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPD 180

Query:   181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             + YKYYP+VV+LA N  ILVVACPLTE+TRHI++R+V+DALG KGVLINIGRGPHVDE+E
Sbjct:   181 VAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQE 240

Query:   241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
             L+ AL EGRLGGA LDVFE EPHVPEELFGLENVVL+PHVGSGTVETR  MADLV+GNLE
Sbjct:   241 LIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLE 300

Query:   301 AHFLNKPLLTPVV 313
             AHF  K LLTPVV
Sbjct:   301 AHFSGKSLLTPVV 313

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 147/305 (48%), Positives = 207/305 (67%)

Query:    11 PMNTYLEQELERRFNLFKFWTVSDKT--QFLKAQQNNIRAVVGNATAGADAELIDALPKL 68
             P  T++++ L R F      T S ++   F     ++ RA V +       EL+  LP L
Sbjct:    16 PSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVTDELLSHLPSL 75

Query:    69 EIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS 128
             +I+   SVG+D +D+  CK +G+ +TN  +  +DDVAD A+GL+++VLRR+  +DRYVRS
Sbjct:    76 QILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAADRYVRS 135

Query:   129 GKWKK-GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYP 187
             G W K GD++L +K +GK VGI+GLG IG  VAKR E+F C I+Y SR++K +  Y+YY 
Sbjct:   136 GNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSSPYRYYS 195

Query:   188 SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247
              ++ LA N  +LV+ C LT+ET HI+NREV++ LG  GV+IN+GRG  +DE+E+V  LV+
Sbjct:   196 DILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEMVKCLVD 255

Query:   248 GRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307
             G +GGAGLDVFENEP VP+ELFGL+NVVL PH    T  +   +A + L NL+A F N+P
Sbjct:   256 GVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRP 315

Query:   308 LLTPV 312
             LL+PV
Sbjct:   316 LLSPV 320

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 131/294 (44%), Positives = 193/294 (65%)

Query:    23 RFNLFK-FWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV 81
             +F + K F +     +FL    ++I A++    A   A+LI  LP L +V + S G+D V
Sbjct:    45 KFEILKAFESPLPLPEFLAYHSDSISAIIAPVAAPVTADLIRILPNLRLVVTTSAGVDHV 104

Query:    82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK-KGDYKLTT 140
             D+V+C+ +G+ V N     ++DVAD A+GL++ V RR+  ++R+V+   W  KGDY L +
Sbjct:   105 DLVECRRRGISVANAGSSFSEDVADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGS 164

Query:   141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-NLKYKYYPSVVELASNCHIL 199
             K   K +GI+GLG IG  VA R +AF C I+Y SR  KP ++ Y YY  + E+A+N   L
Sbjct:   165 KLGRKRIGIVGLGSIGSKVATRLDAFGCQISYSSRNRKPYDVPYHYYMDIEEMAANSDAL 224

Query:   200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE 259
             ++ C L E+T  +IN++V+ ALG +GV++N+ RG  +DE E+V  L EG +GGAGLDVFE
Sbjct:   225 IICCELNEKTLRLINKDVLSALGKRGVIVNVARGAIIDEEEMVRCLREGEIGGAGLDVFE 284

Query:   260 NEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313
             +EP+VP+ELF L+NVV  PH    T+E  + +  +V+GN+EA F NKPLLTPV+
Sbjct:   285 DEPNVPKELFELDNVVFSPHSAFMTLEGLEELGKVVVGNIEAFFSNKPLLTPVL 338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 132/304 (43%), Positives = 179/304 (58%)

Query:    11 PMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAV--VGNATAGADAELIDALPKL 68
             P N    Q L++ F       +++      A +  I AV  +G+ TA   AE+ D LP L
Sbjct:     9 PYNDNDRQALQQEFGALMLGGIAEVAGLEPAMRAGISAVAYMGH-TAFGGAEM-DLLPGL 66

Query:    69 EIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS 128
              ++++F VG D +D+     +G+ VTNTP VL DDVADLA+ ++L   RR+ +   +VR 
Sbjct:    67 GVIANFGVGYDAIDVAAATARGITVTNTPGVLNDDVADLAVTMLLMQCRRMEQGGAWVRE 126

Query:   129 GKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPS 188
             G W+  ++ L  K +G   G++GLGRIG  +A R  AF   I+Y++R+EK    + Y+  
Sbjct:   127 GHWETANFPLNRKASGGVAGVVGLGRIGREIADRLAAFKMDIHYFARSEKDTPGWTYHAD 186

Query:   189 VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248
              V LA     LVVA     ET   I+REVI+ALGP+GV++NI RG  +DE  L+ AL  G
Sbjct:   187 PVSLAKAVDFLVVALVGGPETEKFISREVIEALGPRGVVVNISRGSTIDETALLDALERG 246

Query:   249 RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL 308
             R+ GA LDVF NEP +      L NVVL PH GSGTVETR  M  L  GN+ AH   KP+
Sbjct:   247 RIAGAALDVFLNEPTIDPRFLALSNVVLQPHQGSGTVETRAAMGALQRGNIAAHLAGKPV 306

Query:   309 LTPV 312
             LTPV
Sbjct:   307 LTPV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 108/263 (41%), Positives = 154/263 (58%)

Query:    60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
             E +    KLE+VSS SVG D  D+    E+G+ +TNTPDVLT+  ADL   L+++  RR+
Sbjct:    59 EQLQNAAKLEVVSSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRV 118

Query:   120 CESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRT 176
              E D Y ++G+W +        T   GKT+GI+G+G IG A+A+R    F+ PI Y   +
Sbjct:   119 AELDAYTKAGQWTRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNS 178

Query:   177 EKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
              K  L+ +    + S+ +L +    + +  PL+E+T+H+I R  +  + P  +LINI RG
Sbjct:   179 RKTELEQELGAQFRSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILINIARG 238

Query:   234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293
             P VDE  L+ AL  G + GAGLDV+E EP     LF L+N V +PH+GS T ETR+ MAD
Sbjct:   239 PIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQAMAD 298

Query:   294 LVLGNLEAHFLN-KP--LLTPVV 313
                 NL    L  +P  L+ P V
Sbjct:   299 RAYHNLRNALLGERPQDLVNPQV 321

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 104/262 (39%), Positives = 158/262 (60%)

Query:    58 DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
             D   I  LP+ ++++++  VG D +D+     KG+ VTNTP V+T+D ADLA  L+LA  
Sbjct:    50 DHNFITQLPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAAS 108

Query:   117 RRLCESDRYVRSGKWKKGDYK--LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
             R+L  +++++R+G+W   +    L     G  +GIIG G IG AVA+RA+AF+  I Y+ 
Sbjct:   109 RQLTANEKFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHG 168

Query:   175 RTEK----PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
                K     +L+  Y+ ++ ++ +   I+ + CPL E T H+IN + I  + P  +L+N 
Sbjct:   169 PRRKIDAEVSLEAVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNT 228

Query:   231 GRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKT 290
             GRGP +DE  LV A+ +G L  AGLDVFE+EP + ++L  L NV L PH+GS T + R  
Sbjct:   229 GRGPLIDESALVGAMKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGA 288

Query:   291 MADLVLGNLEAHFLNKPLLTPV 312
             MA   +GN+ A    + LLT V
Sbjct:   289 MAACAIGNILAQMEGRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 104/262 (39%), Positives = 158/262 (60%)

Query:    58 DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
             D   I  LP+ ++++++  VG D +D+     KG+ VTNTP V+T+D ADLA  L+LA  
Sbjct:    50 DHNFITQLPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAAS 108

Query:   117 RRLCESDRYVRSGKWKKGDYK--LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
             R+L  +++++R+G+W   +    L     G  +GIIG G IG AVA+RA+AF+  I Y+ 
Sbjct:   109 RQLTANEKFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHG 168

Query:   175 RTEK----PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
                K     +L+  Y+ ++ ++ +   I+ + CPL E T H+IN + I  + P  +L+N 
Sbjct:   169 PRRKIDAEVSLEAVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNT 228

Query:   231 GRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKT 290
             GRGP +DE  LV A+ +G L  AGLDVFE+EP + ++L  L NV L PH+GS T + R  
Sbjct:   229 GRGPLIDESALVGAMKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGA 288

Query:   291 MADLVLGNLEAHFLNKPLLTPV 312
             MA   +GN+ A    + LLT V
Sbjct:   289 MAACAIGNILAQMEGRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 115/316 (36%), Positives = 178/316 (56%)

Query:     6 VLMACPMNTYLEQELERRFN--LFKFWTVSDKTQFLKAQQ--NNIRAVVGNA-TAGADAE 60
             +L+A PM   +E      F   +    T   + + L+A +  + +   +G+  +A   A+
Sbjct:     3 LLIARPMTAAVEARARAEFETEIRTSTTPLSEAEMLRALREFDIVMPTLGDMFSADVFAQ 62

Query:    61 LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
             + +  P+  ++++F VG + + +   +  GV VTNTP  +TD  AD+A+ L+L   RR  
Sbjct:    63 VPE--PRCRLLANFGVGYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTARRAG 120

Query:   121 ESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTE 177
             E +R VRSG W+       L    TGK VGI+GLGRIG A+A+R    F   ++Y +R++
Sbjct:   121 EGERLVRSGAWEGWHPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSYVARSD 180

Query:   178 KP-NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
             K  +       S+  LA     LV+A P   ETRH+I+ +++ A+ P G+L+NI RG  V
Sbjct:   181 KDVDFPVSRMESLAALAGAVDFLVIAVPGGGETRHLIDAQILAAMKPSGILVNIARGEVV 240

Query:   237 DERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVL 296
             DE  L++AL E ++ GAGLDV+E EP VPE L  +E V L+PH+G+ T E R +M  + L
Sbjct:   241 DEAALIAALSERQIAGAGLDVYEFEPKVPEALRAMEQVTLLPHLGTATEEVRSSMGHMAL 300

Query:   297 GNLEAHFLNKPLLTPV 312
              N+ A    + L  PV
Sbjct:   301 DNVAAFAAGRDLPNPV 316

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 106/264 (40%), Positives = 159/264 (60%)

Query:    59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
             A+L +A  +LE+VSS SVG D  D+    E+G+ +TNTPDVLT+  ADLA  L+++  RR
Sbjct:    59 AQLENAA-RLEVVSSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARR 117

Query:   119 LCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSR 175
             + E D + ++G+W+   G         GKT+GI+G+G IG A+A+R    F  PI Y   
Sbjct:   118 VAELDAWTKAGQWQASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGN 177

Query:   176 TEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
             + K  L+ +    + S+ +L +    + +  PL+E+T+H+I+   +  + P  +L+NI R
Sbjct:   178 SRKAALEQELGAQFRSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVNISR 237

Query:   233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMA 292
             GP VDE  L+ AL +G++ GAGLDV+E EP     LF L+N V +PH+GS T ETR  MA
Sbjct:   238 GPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRDAMA 297

Query:   293 DLVLGNLEAHFLN-KP--LLTPVV 313
                + NL +  L  +P  L+ P V
Sbjct:   298 ARAMSNLRSALLGERPQDLVNPQV 321

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 103/261 (39%), Positives = 159/261 (60%)

Query:    49 VVGNATAGADAELID-ALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADL 107
             +V   T   D  L+  A  +L +++ F  G+D +D+    ++G+ VTNTP VLTDD AD+
Sbjct:    52 LVPTVTDKIDGRLMARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADV 111

Query:   108 AIGLMLAVLRRLCESDRYVRSGK---WKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE 164
             A+ L+LAV RR+ E  + + +GK   W    + +  + +GK +GIIG+GRIG AVA+RA 
Sbjct:   112 AMALILAVPRRMHEGVQIMEAGKFDGWTP-TWMMGRRLSGKRLGIIGMGRIGQAVARRAR 170

Query:   165 AFSCPINYYSRTE-----KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID 219
             AF   I+Y++R       + +L+  Y+ S+ ++ +   I+ + CP T  T H+IN   + 
Sbjct:   171 AFGMQIHYHNRKPVSSRIEESLEATYWDSLDQMLARMDIVSINCPHTPATFHLINARRLG 230

Query:   220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPH 279
              + P+  +IN  RG  +DE  L  A+  G++ GAGLDVFE EP V  EL GL NV+L+PH
Sbjct:   231 LMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLLPH 290

Query:   280 VGSGTVETRKTMADLVLGNLE 300
             +GS T+E R  M + V+ N++
Sbjct:   291 MGSATIEGRTEMGEKVIINIK 311

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2U573	GHRB_SHIB3	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
B7MER0	GHRB_ECO45	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
Q9CA90	HPR2_ARATH	1, ., 1, ., 1, ., 8, 1	0.7859	1.0	1.0	yes	no
Q31V71	GHRB_SHIBS	1, ., 1, ., 1, ., 8, 1	0.3627	0.8945	0.8641	yes	no
B7N1K7	GHRB_ECO81	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
Q6DB24	GHRB_ERWCT	1, ., 1, ., 1, ., 8, 1	0.3944	0.8881	0.8687	yes	no
B1IZP1	GHRB_ECOLC	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
A1AH96	GHRB_ECOK1	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
C6DJ88	GHRB_PECCP	1, ., 1, ., 1, ., 8, 1	0.3979	0.8881	0.8687	yes	no
Q0TBP9	GHRB_ECOL5	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
A7ZTA0	GHRB_ECO24	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
B6I3C3	GHRB_ECOSE	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
A8ARD9	GHRB_CITK8	1, ., 1, ., 1, ., 8, 1	0.3608	0.9073	0.8765	yes	no
Q3YVT5	GHRB_SHISS	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
B5YVK6	GHRB_ECO5E	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
O32264	TKRA_BACSU	1, ., 1, ., 1, ., 2, 1, 5	0.3601	0.8913	0.8584	yes	no
B7LTG7	GHRB_ESCF3	1, ., 1, ., 1, ., 8, 1	0.3809	0.9105	0.8796	yes	no
A6TFG7	GHRB_KLEP7	1, ., 1, ., 1, ., 8, 1	0.3642	0.9073	0.8792	yes	no
B7L6W9	GHRB_ECO55	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
B7M3H6	GHRB_ECO8A	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
Q1R543	GHRB_ECOUT	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
B7ULB4	GHRB_ECO27	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no
A4W577	GHRB_ENT38	1, ., 1, ., 1, ., 8, 1	0.3539	0.9073	0.8765	yes	no
Q8FCF1	GHRB_ECOL6	1, ., 1, ., 1, ., 8, 1	0.3593	0.8945	0.8641	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_III0012 hypothetical protein (314 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-178
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-116
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-112
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	1e-100
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	4e-90
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-89
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	7e-83
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-81
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	5e-81
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	5e-81
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	5e-77
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-75
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	9e-74
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	3e-73
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-70
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	9e-70
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	4e-67
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-64
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	5e-60
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	5e-60
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	9e-60
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	3e-59
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	3e-58
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	5e-57
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-55
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	1e-53
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	4e-51
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	1e-49
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-47
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	4e-46
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	4e-46
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	4e-46
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-45
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	2e-43
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-43
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	8e-43
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	3e-42
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	5e-42
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-41
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	5e-40
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	8e-40
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	1e-38
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-37
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	6e-36
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-34
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	3e-34
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	4e-34
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-33
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-33
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	8e-31
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	3e-28
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	2e-27
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	8e-27
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	7e-22
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	4e-21
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	1e-20
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	7e-19
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-17
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	6e-13
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	2e-11
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-07

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  495 bits (1276), Expect = e-178
 Identities = 166/300 (55%), Positives = 211/300 (70%)

Query: 4   IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELID 63
             VL   P+   L  ELE RF + + W  +D    L      IRAVV N   G  A LI 
Sbjct: 1   PDVLQLGPLPPELLAELEARFTVHRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIA 60

Query: 64  ALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESD 123
           ALP LE+++SF VG D +D+   + +G+RVTNTP VLTDDVADLA+GL+LAVLRR+  +D
Sbjct: 61  ALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAAD 120

Query: 124 RYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY 183
           R+VR+G+W KG + LT K +GK VGI+GLGRIG A+A+R EAF   I Y+ R  KP++ Y
Sbjct: 121 RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDVPY 180

Query: 184 KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVS 243
           +YY S++ELA+   +LVVACP    TRH++N EV++ALGP GVL+N+ RG  VDE  L++
Sbjct: 181 RYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIA 240

Query: 244 ALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303
           AL EGR+ GAGLDVFENEP+VP  L  L+NVVL PH+ S TVETR+ M DLVL NLEA F
Sbjct: 241 ALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMGDLVLANLEAFF 300

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  335 bits (863), Expect = e-116
 Identities = 133/309 (43%), Positives = 183/309 (59%), Gaps = 15/309 (4%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQ--NNIR---AVVGNATAGADAE 60
           VL+   +       L   F +     V D+ + L  ++     +    ++   T   DAE
Sbjct: 3   VLVTRRLPEEALALLREGFEV----EVWDEDRPLPREELLEAAKGADGLLCTLTDKIDAE 58

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           L+DA P L++++++SVG D +D+   K +G+ VTNTPDVLTD  ADLA  L+LA  RR+ 
Sbjct: 59  LLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVV 118

Query: 121 ESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
           E DR+VR+G+WK       L T   GKT+GI+G+GRIG AVA+RA+ F   I Y++R+ K
Sbjct: 119 EGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRK 178

Query: 179 PNLKYK---YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
           P  + +    Y S+ EL +    + + CPLT ETRH+IN E +  + P  +LIN  RG  
Sbjct: 179 PEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGV 238

Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADL 294
           VDE  LV AL  G++ GAGLDVFE EP   +  L  L NVVL+PH+GS TVETR  MA+L
Sbjct: 239 VDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAEL 298

Query: 295 VLGNLEAHF 303
              NL A  
Sbjct: 299 AADNLLAVL 307

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  326 bits (839), Expect = e-112
 Identities = 127/320 (39%), Positives = 177/320 (55%), Gaps = 12/320 (3%)

Query: 4   IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELID 63
           I VL    +   + + L+ +F + ++         L  +  +  AV+       DAE+++
Sbjct: 3   IVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLE 62

Query: 64  ALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESD 123
            LP L+++++ S G D VD+   KE+G+ VTN P   T+ VA+ A+ L+LA+ RR+ E D
Sbjct: 63  KLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGD 122

Query: 124 RYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP- 179
           R VR G W      D  L     GKT+GIIGLGRIG AVA+R + F   + YY R+  P 
Sbjct: 123 RRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE 182

Query: 180 ---NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
               L  +Y   + EL +   I+ + CPLT ETRH+IN E +  + P  +L+N  RG  V
Sbjct: 183 AEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLV 241

Query: 237 DERELVSALVEGRLGGAGLDVFENEPH-VPEELFGLEN---VVLMPHVGSGTVETRKTMA 292
           DE+ L+ AL  G++ GAGLDVFENEP      L  L+N   VVL PH+ S T E RK MA
Sbjct: 242 DEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMA 301

Query: 293 DLVLGNLEAHFLNKPLLTPV 312
           +L L NLEA F        V
Sbjct: 302 ELALENLEAFFDGGVPPNEV 321

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  295 bits (758), Expect = e-100
 Identities = 113/301 (37%), Positives = 161/301 (53%), Gaps = 6/301 (1%)

Query: 6   VLMACPMN-TYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDA 64
           VL+  P+      + LE                 L+A   +  A++ ++T    AE++  
Sbjct: 2   VLVLEPLFPPEALEALEATGFEVIVADD-LLADELEALLADADALIVSSTTPVTAEVLAK 60

Query: 65  LPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR 124
            PKL+ +     G+D +D+   K++G+ VTN P    + VA+ A+GL+LA+LRRL  +D 
Sbjct: 61  APKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADA 120

Query: 125 YVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---L 181
            VR G           +  GKTVGI+GLGRIG  VAKR +AF   + YY RT KP     
Sbjct: 121 AVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEED 180

Query: 182 KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
                 S+ EL +   ++V+  PLT ETRH+IN E +  + P  VL+N  RG  VDE  L
Sbjct: 181 LGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDAL 240

Query: 242 VSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           + AL  G++ GA LDVFE EP   +  L  L NV+L PH+   T E R+ MA++ + NLE
Sbjct: 241 LRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300

Query: 301 A 301
            
Sbjct: 301 R 301

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  271 bits (694), Expect = 4e-90
 Identities = 110/261 (42%), Positives = 147/261 (56%), Gaps = 6/261 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           D E+IDA   L+I++++  G D +D+   KEKG+ VTNTP V T+  A+L  GL+LA+ R
Sbjct: 56  DKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALAR 115

Query: 118 RLCESDRYVRSGKWKKGD--YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
           R+ E DR +R G +      + L  +  GKT+GIIG+GRIG AVA+RA+AF   I YY+R
Sbjct: 116 RIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNR 175

Query: 176 TEKPNLKYK----YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
                   K     Y  + EL      + +  P T ET H+I+      + P   LIN  
Sbjct: 176 HRLSEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAA 235

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
           RGP VDE+ LV AL  G + GA LDVFE EP V  EL  L+NV+L PH+G+ TVE R  M
Sbjct: 236 RGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDAM 295

Query: 292 ADLVLGNLEAHFLNKPLLTPV 312
           A     N+ +    K     V
Sbjct: 296 AKEAADNIISFLEGKRPKNIV 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  269 bits (691), Expect = 2e-89
 Identities = 111/298 (37%), Positives = 171/298 (57%), Gaps = 16/298 (5%)

Query: 19  ELERRFNLFKFWTVSDKTQFLKA----QQNNIRAVV-GNATAGA----DAELIDALPK-L 68
           EL     +    T   + +F++A    +  +  A+     +AG     D ELI  LP  L
Sbjct: 19  ELSSIAEVIYP-TSGTREEFIEALKEGKYGDFVAIYRTFGSAGETGPFDEELISPLPPSL 77

Query: 69  EIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS 128
           +I++    G D++D+    ++G++V+NTP  + +  AD A+ L+L  LR    ++R  R+
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARA 137

Query: 129 GKWKKG-DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-NLKY--- 183
           GKW+   D  L     GKT+GI+GLG IG A+A++A AF   I Y++R+  P  L+    
Sbjct: 138 GKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKALA 197

Query: 184 KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVS 243
            YY S+ EL +   ++ + CPLT  TRH+IN++    +    +++N  RG  +DE  LV 
Sbjct: 198 TYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVD 257

Query: 244 ALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
           AL  G++  AGLDVFENEP V   L  + NV L+PH+G+ TVET++ M +LVL N+EA
Sbjct: 258 ALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEA 315

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  253 bits (647), Expect = 7e-83
 Identities = 123/263 (46%), Positives = 164/263 (62%), Gaps = 9/263 (3%)

Query: 48  AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADL 107
           A+V   +   D E+ +A P+L IV++++VG D +D+ +   +G+ VTNTP VLT+  AD 
Sbjct: 48  ALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADF 107

Query: 108 AIGLMLAVLRRLCESDRYVRSGKWKKGDYK------LTTKFTGKTVGIIGLGRIGMAVAK 161
           A  L+LA  RRL E+D +VRSG+WK+          L     GKT+GIIG GRIG AVA+
Sbjct: 108 AWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVAR 167

Query: 162 RAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVI 218
           RA+ F   I YYSRT KP  + +    Y  + EL      + +  PLT+ET H+IN E +
Sbjct: 168 RAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERL 227

Query: 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMP 278
             + P  +L+N  RG  VD + LV AL EG + GAGLDVFE EP+  EELF L+NVVL P
Sbjct: 228 KLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAP 287

Query: 279 HVGSGTVETRKTMADLVLGNLEA 301
           H+GS T E R+ MA+LV  NL A
Sbjct: 288 HIGSATFEAREGMAELVAENLIA 310

Length = 333

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  248 bits (635), Expect = 3e-81
 Identities = 105/258 (40%), Positives = 149/258 (57%), Gaps = 5/258 (1%)

Query: 49  VVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLA 108
           +V       DAEL+ A P+L ++    VGLD VD+     +G+ V N P    + VA+ A
Sbjct: 47  LVPGMRKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHA 106

Query: 109 IGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC 168
           + LMLA+LRRL E+DR +R+G+W + + + + + +GKTVGI+GLG IG AVA+R   F  
Sbjct: 107 VMLMLALLRRLPEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV 166

Query: 169 PINYYSRTEKPNLKYKYYPSVV----ELASNCHILVVACPLTEETRHIINREVIDALGPK 224
            + YY R   P  + K          EL +   ++ +  PLT ETRH+I  E + A+ P 
Sbjct: 167 EVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPG 226

Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSG 283
            +LIN  RG  VDE  L++AL  G L GAGLDVF  EP  P+  L  L+NV+L PH+   
Sbjct: 227 AILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGV 286

Query: 284 TVETRKTMADLVLGNLEA 301
           T E+ + MA +V  N+  
Sbjct: 287 TDESYQRMAAIVAENIAR 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  247 bits (633), Expect = 5e-81
 Identities = 99/248 (39%), Positives = 139/248 (56%), Gaps = 11/248 (4%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E++ A P+L+++S + VG D +D+   K++G+ VTNTP   ++ VA+L IGLMLA+ R
Sbjct: 59  TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALAR 118

Query: 118 RLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
           ++ ++DR VR+G W +  G     T+  GKT+GIIGLGRIG AVA+R   F   +  Y  
Sbjct: 119 QIPQADREVRAGGWDRPVG-----TELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDP 173

Query: 176 TEKPNLKYKYYPSVV---ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
                   ++    V   EL      + +  PLT ETRH+IN   +  + P  +LIN  R
Sbjct: 174 YPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTAR 233

Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTM 291
           G  VDE  L  AL  GR+ GA LDVFE EP      L  L NV+L PH+G+ T E    M
Sbjct: 234 GGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRM 293

Query: 292 ADLVLGNL 299
             +   N+
Sbjct: 294 GTMAAQNV 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  247 bits (634), Expect = 5e-81
 Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 7/311 (2%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           VL+  P+     +EL   +++          + L     +  A++ + T     E++ A 
Sbjct: 6   VLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIVSVT-PVTEEVLAAA 64

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           P L+ +     G+D +D+    ++G+ V N P      VA+L + L+LA+ RR+ ++D  
Sbjct: 65  PNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADAS 124

Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----L 181
            R G+W +  ++ T    GKTVGIIGLGRIG AVAKR +AF   +  Y            
Sbjct: 125 QRRGEWDRKAFRGTELA-GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD 183

Query: 182 KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
                 S+ EL +   IL +  PLT ETR +IN E +  + P  +LIN  RG  VDE  L
Sbjct: 184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDAL 243

Query: 242 VSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           ++AL  G++ GA LDVFE EP   +  L+ L NV+L PH+G  T E ++ +A++V  N+ 
Sbjct: 244 LAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIV 303

Query: 301 AHFLNKPLLTP 311
            +    P++  
Sbjct: 304 RYLAGGPVVNN 314

Length = 324

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  237 bits (607), Expect = 5e-77
 Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 14/243 (5%)

Query: 53  ATAGADA----------ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTD 102
           A A ADA          E+I+ALP+L+++  + VG+D VD+    E+G+ V N PD  T+
Sbjct: 41  AAADADALLVQYAPVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTE 100

Query: 103 DVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKR 162
           +VAD A+ L+LA+ R+L   DR VR+G W         +  G T+G++G GRIG AVAKR
Sbjct: 101 EVADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGRIGRAVAKR 160

Query: 163 AEAFSCPINYYSRTEKPNLKYKYYPSVV---ELASNCHILVVACPLTEETRHIINREVID 219
           A+AF   +  Y       +       VV   EL +   ++ + CPLT ETRH+I+ E + 
Sbjct: 161 AKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALA 220

Query: 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMP 278
            + P   L+N  RG  VDE  L  AL  GR+ GA LDV E EP   +  L    NV+L P
Sbjct: 221 LMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTP 280

Query: 279 HVG 281
           H  
Sbjct: 281 HAA 283

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  233 bits (597), Expect = 1e-75
 Identities = 91/314 (28%), Positives = 147/314 (46%), Gaps = 10/314 (3%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           VL+  P+     + L+    + +        + L+A ++   A++  +T    AE+++A 
Sbjct: 1   VLITDPLRPEELELLKEGGEV-EVHDELLTEELLEAAKD-ADALIVRSTTPVTAEVLEAA 58

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           P L++++   VG+D +D+    E+G+ VTN P   T+ VA+L +GL+LA+ RR+ E+D  
Sbjct: 59  PGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADAS 118

Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKYK 184
           VR+G WKKG   +  +  GKT+G+IG G IG   A  A+A     + Y         +  
Sbjct: 119 VRAGDWKKGGP-IGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEG 177

Query: 185 YYPSVVEL------ASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE 238
               ++          +  ++ +A P T +T HII  E    L     + N   G  ++E
Sbjct: 178 GVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEE 237

Query: 239 RELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGN 298
             L + L EG    A   V E  P V   L  L NV+L PH+   T E ++ MA+    N
Sbjct: 238 AALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAEN 297

Query: 299 LEAHFLNKPLLTPV 312
           L A          V
Sbjct: 298 LLAFLKGGTPPNAV 311

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  228 bits (584), Expect = 9e-74
 Identities = 96/268 (35%), Positives = 147/268 (54%), Gaps = 4/268 (1%)

Query: 39  LKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPD 98
           L  +  +   ++  +      E+IDA   L+I++   VGLD +D+   K+KG++V NTP 
Sbjct: 35  LLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPG 94

Query: 99  VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMA 158
             ++ VA+L IGLML++ R +  ++R ++ GKW K  YK   +  GKT+GIIG GRIG  
Sbjct: 95  ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKKKYK-GIELRGKTLGIIGFGRIGRE 153

Query: 159 VAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV---ELASNCHILVVACPLTEETRHIINR 215
           VAK A A    +  Y    K     +     V   EL  N   + +  PLT ET+H+IN+
Sbjct: 154 VAKIARALGMNVIAYDPYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINK 213

Query: 216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVV 275
           + ++ +    ++IN  RG  +DE  L+ AL  G+L GA LDVFENEP    +L  L NV 
Sbjct: 214 KELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVS 273

Query: 276 LMPHVGSGTVETRKTMADLVLGNLEAHF 303
           L PH+G+ T E ++ + + +   +    
Sbjct: 274 LTPHIGASTKEAQERIGEELANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  227 bits (582), Expect = 3e-73
 Identities = 96/251 (38%), Positives = 141/251 (56%), Gaps = 6/251 (2%)

Query: 49  VVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLA 108
           +V +AT    AE+I+A P+L+++    VG+D +D+     +G+ V N P   T  VA+  
Sbjct: 45  IVRSATK-VTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHT 103

Query: 109 IGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC 168
           I LMLA+ R + ++D  +R+GKW +  +    +  GKT+GI+GLGRIG  VA+RA AF  
Sbjct: 104 IALMLALARNIPQADASLRAGKWDRKKFM-GVELRGKTLGIVGLGRIGREVARRARAFGM 162

Query: 169 PINYYSRT---EKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG 225
            +  Y      E+         S+ EL +    + +  PLT ETR +IN E +  + P  
Sbjct: 163 KVLAYDPYISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGA 222

Query: 226 VLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGT 284
           +LIN  RG  VDE  L  AL  G++ GA LDVFE EP   +  L GL NV+L PH+G+ T
Sbjct: 223 ILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGAST 282

Query: 285 VETRKTMADLV 295
            E ++ +A   
Sbjct: 283 EEAQERVAVDA 293

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  220 bits (563), Expect = 2e-70
 Identities = 99/253 (39%), Positives = 145/253 (57%), Gaps = 6/253 (2%)

Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
            E+I+A   L+++S    G+D VD+  CKE+G+ V+N     T+ VA+L IGL + +LR 
Sbjct: 61  GEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRN 120

Query: 119 LCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
           +   D  VR+G  K G   +  +  GKTVGI+G G IG+ VA+  +AF C +  YSR+EK
Sbjct: 121 IVPCDAAVRAGGTKAG--LIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEK 178

Query: 179 PNLKYKY--YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
              K     Y S+ EL +   I+ +  PL +ET+ +I +E +  +    +LIN  RGP V
Sbjct: 179 EEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVV 238

Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADL 294
           D   L  AL EG++ GAG+DVF+ EP +P +  L    N +L PHV   T E  +  A++
Sbjct: 239 DNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRAEI 298

Query: 295 VLGNLEAHFLNKP 307
           V  N+EA    KP
Sbjct: 299 VFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  213 bits (546), Expect = 9e-70
 Identities = 80/176 (45%), Positives = 109/176 (61%), Gaps = 4/176 (2%)

Query: 109 IGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC 168
           + L+LA+ RR+ E+DR VR+G+W+     L  + +GKTVGIIGLGRIG AVA+R +AF  
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDAL-LGRELSGKTVGIIGLGRIGRAVARRLKAFGM 59

Query: 169 PINYYSRTEKPNLK--YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV 226
            +  Y R  K   +     Y S+ EL +   ++ +  PLT ETRH+IN E +  + P  +
Sbjct: 60  KVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119

Query: 227 LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVG 281
           LIN  RG  VDE  L++AL  GR+ GA LDVFE EP  P+  L  L NV+L PH+ 
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  211 bits (541), Expect = 4e-67
 Identities = 94/254 (37%), Positives = 143/254 (56%), Gaps = 14/254 (5%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DAE++  LP L+++   + G + VD+   KE+G+ VTN P   TD VA     L+LA+ R
Sbjct: 56  DAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALAR 115

Query: 118 RLCESDRYVRSGKWKKG------DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN 171
            +   +  V++G+W+K       DY +     GKT+GIIG G IG AVA+ A AF   + 
Sbjct: 116 LVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAFGMKVL 174

Query: 172 YYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
           +  R   P L+  Y  S+ EL +   ++ + CPLT ETR++IN E +  + P  +LIN  
Sbjct: 175 FAERKGAPPLREGY-VSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTA 233

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE----LFGLENVVLMPHVGSGTVET 287
           RG  VDE+ L  AL  G++ GAGLDV   EP  P      L    N+++ PH+   + E 
Sbjct: 234 RGGLVDEQALADALNSGKIAGAGLDVLSQEP--PRADNPLLKAAPNLIITPHIAWASREA 291

Query: 288 RKTMADLVLGNLEA 301
           R+ + D+++ N++A
Sbjct: 292 RQRLMDILVDNIKA 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  205 bits (524), Expect = 2e-64
 Identities = 98/249 (39%), Positives = 139/249 (55%), Gaps = 7/249 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA L++ +PKL   S+ SVG D  D+     + + + +TP VLT+ VAD  + L+L+  R
Sbjct: 57  DAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTAR 116

Query: 118 RLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYS 174
           R+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +
Sbjct: 117 RVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNA 176

Query: 175 RTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
           R      + ++   Y  +  L      + +  PLT+ET H+   E    +    + IN G
Sbjct: 177 RRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKT 290
           RGP VDE  L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  
Sbjct: 237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296

Query: 291 MADLVLGNL 299
           MA   + NL
Sbjct: 297 MAACAVDNL 305

Length = 323

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  193 bits (494), Expect = 5e-60
 Identities = 86/261 (32%), Positives = 130/261 (49%), Gaps = 15/261 (5%)

Query: 54  TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
            A    ++I+A PKL+++     G + VD+    E+G+ V NTP    + VA+  +GLML
Sbjct: 54  FAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLML 113

Query: 114 AVLRRLCESDRYVRSGKWKKG---DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI 170
           A  R +  +   ++ G+W+K          +  GKTVGI+G G IG  VAKR +AF   +
Sbjct: 114 AETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEV 173

Query: 171 NYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
             Y       + E   +K     S+ EL     ++ +   LT ETR +I  E    + P 
Sbjct: 174 LVYDPYVDPEKIEADGVKKV---SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPT 230

Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLENVVLMPHVGS 282
              IN  R   VDE  L+ AL EG++GGA LDVF  EP +P    L  L+NV L PH+  
Sbjct: 231 AYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAG 289

Query: 283 GTVETRKTMADLVLGNLEAHF 303
            T +  +   +++   L+ + 
Sbjct: 290 ATRDVAERSPEIIAEELKRYL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  193 bits (494), Expect = 5e-60
 Identities = 99/313 (31%), Positives = 156/313 (49%), Gaps = 14/313 (4%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           +L+  P++    + L       +   V+ +   L  +  +   ++GN       EL+ A 
Sbjct: 3   ILVLSPLDDEHLERLRAAAPGAELRVVTAEE--LTEELADADVLLGN---PPLPELLPAA 57

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           P+L  + S S G+D +   +  E+ V +TN   +    +A+  +G MLA  R+L    R 
Sbjct: 58  PRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARN 117

Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT--EKPNLKY 183
               +W++       +  GKTV I+GLG IG  +A+RA+AF   +    R+    P +  
Sbjct: 118 QAERRWQRRG--PVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVD 175

Query: 184 KYYPS--VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
           + Y    + EL      +V A PLT ETR + N E   A+ P  VLIN+GRG  VDE  L
Sbjct: 176 EVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDAL 235

Query: 242 VSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           + AL  GR+ GA LDVFE EP +P +  L+ L NV++ PH+   +    + + ++ L NL
Sbjct: 236 IEALESGRIAGAALDVFEEEP-LPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLENL 294

Query: 300 EAHFLNKPLLTPV 312
             +   +PLL  V
Sbjct: 295 RRYLAGEPLLNVV 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  193 bits (493), Expect = 9e-60
 Identities = 90/271 (33%), Positives = 128/271 (47%), Gaps = 30/271 (11%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DAEL+D  P L+ +S  + G D +D+   KE G+ VTN P+   + VA+  I L+LA+LR
Sbjct: 58  DAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLR 117

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFT----GKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
                D        K  D +           +TVG++G G+IG AVA+RA+ F   +  Y
Sbjct: 118 NRKYIDERD-----KNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAY 172

Query: 174 SRTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
                P L+ K   Y S+ EL  N  I+ +  PLT E  H+IN E    +    ++IN  
Sbjct: 173 DPFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTA 232

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVP----------------EELFGLENVV 275
           RG  VD   L+ AL  G++ GAGLDV E+E   P                  L    NV+
Sbjct: 233 RGSLVDTEALIEALDSGKIFGAGLDVLEDE--TPDLLKDLEGEIFKDALNALLGRRPNVI 290

Query: 276 LMPHVGSGTVETRKTMADLVLGNLEAHFLNK 306
           + PH    T +  K M ++   N+   FL  
Sbjct: 291 ITPHTAFYTDDALKNMVEISCENI-VDFLEG 320

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  192 bits (489), Expect = 3e-59
 Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 14/245 (5%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA+ +DA P+L+I++    G D  D+  C  +G+ VT  PD+LT+  A+L IGL++ + R
Sbjct: 57  DADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 118 RLCESDRYVRSGKWKKGDYKL-TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
            +   DR+VRSGK+     K   T   GKTVGI+G+G +G A+A+R   F   + YY   
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPH 176

Query: 177 EKPNLKYKY----YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
                + +        + EL  +   LV+A PLT +T H+IN E +  + P  +L+N  R
Sbjct: 177 PLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCR 236

Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE-------PH-VPEELFGLE-NVVLMPHVGSG 283
           G  VDE  +  AL  G LGG   DVFE E       P  +P+EL       V  PH+GS 
Sbjct: 237 GSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSA 296

Query: 284 TVETR 288
             E R
Sbjct: 297 VDEVR 301

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  194 bits (497), Expect = 3e-58
 Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 12/236 (5%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
            AE+++A   L+++    VG+D VD+     +G+ V N P   T   A+  I LMLA+ R
Sbjct: 55  TAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALAR 114

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
            + ++   +++GKW++  +    +  GKT+GIIGLGRIG  VAKRA+AF   +  Y    
Sbjct: 115 NIPQAHASLKAGKWERKKFM-GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI 173

Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV-LINI 230
              R  +  ++     S+ EL +    + +  PLT ETR +I  E + A    GV +IN 
Sbjct: 174 SPERAAQLGVELV---SLDELLARADFITLHTPLTPETRGLIGAEEL-AKMKPGVRIINC 229

Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVE 286
            RG  +DE  L  AL  G++ GA LDVFE EP     LF L NVV+ PH+G+ T E
Sbjct: 230 ARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAE 285

Length = 526

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  191 bits (488), Expect = 5e-57
 Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 17/270 (6%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E+I A PKL+++    VG+D +D+     +G+ V N P   T   A+ A+ ++LA  R
Sbjct: 53  TEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAAR 112

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
            + ++D  ++ G+W +  +   T+  GKT+G+IGLGRIG  VAKRA+AF   +  Y    
Sbjct: 113 NIPQADASLKEGEWDRKAFM-GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI 171

Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
              R E+  L  +    + EL +    + V  PLT ETR +I  E +  +    +++N  
Sbjct: 172 SPERAEQ--LGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
           RG  +DE  L  AL EG +  A LDVFE EP     LF L+NV+  PH+G+ T E ++ +
Sbjct: 230 RGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENV 289

Query: 292 A--------DLVLGNLEAHFLNKPLLTPVV 313
           A        D + G    + +N P +   V
Sbjct: 290 ATQVAEQVLDALKGLPVPNAVNAPGIDADV 319

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  182 bits (464), Expect = 2e-55
 Identities = 92/266 (34%), Positives = 139/266 (52%), Gaps = 6/266 (2%)

Query: 48  AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPD-VLTDDVAD 106
            ++ + T   D E  +    L++++   +G D VD+    E GV VT  P  V  D VA+
Sbjct: 50  IIIASVTPNFDKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAE 109

Query: 107 LAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA-EA 165
            A+ L+L VLR++ ++   V+ GKW +    +  + +GKTVGIIG G IG  VA+   E 
Sbjct: 110 HAVALILTVLRKINQASEAVKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEG 169

Query: 166 FSCPINYYS---RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALG 222
           F+  +  Y      E    K     S+ EL +   I+ +  PLTEET H+IN +    + 
Sbjct: 170 FNAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229

Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVG 281
              +L+N  RG  +DE  L+ AL  G++ GAGLDV E EP   +  L   ENVV+ PH+G
Sbjct: 230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIG 289

Query: 282 SGTVETRKTMADLVLGNLEAHFLNKP 307
           + T E+   M + V+ ++E     K 
Sbjct: 290 AYTYESLYGMGEKVVDDIEDFLAGKE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  177 bits (451), Expect = 1e-53
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 11/252 (4%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
            A L++ LP L+++ +  +    +D+   KE+G+ V  T        A+L   L+LA+ R
Sbjct: 60  PAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALAR 118

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
            L E D  +R+G W+     L T   GKT+GI+GLGRIG  VA+  +AF   +  +S   
Sbjct: 119 NLPEEDAALRAGGWQTT---LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNL 175

Query: 178 KP----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
                     +   S  EL +   ++ +   L++ TR ++  E +  + P  +L+N  RG
Sbjct: 176 TAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRG 235

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTM 291
           P VDE  L++AL  GR+ GA LDVF+ EP +P +  L GL NV+L PH+G  T E  +  
Sbjct: 236 PLVDEGALLAALRAGRIAGAALDVFDVEP-LPADHPLRGLPNVLLTPHIGYVTEEAYEGF 294

Query: 292 ADLVLGNLEAHF 303
               + N+ A  
Sbjct: 295 YGQAVENIAAWL 306

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  170 bits (434), Expect = 4e-51
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 24/310 (7%)

Query: 16  LEQELERRFNLFKFW--TVSDKT--QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIV 71
           L +E E            + D+   + L+    +   +VG        E + AL +L+++
Sbjct: 11  LREEFEAALEGLYAEVPELPDEAAEEALE----DADVLVGGR--LTKEEALAALKRLKLI 64

Query: 72  SSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKW 131
              S G+D + + +  E GV V N     +  VA+ A+ L+LA+ +R+ E D  +R G W
Sbjct: 65  QVPSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIW 122

Query: 132 KK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK---PNLKYKYY 186
               G+   + +  GKTVGI+G G IG  +A+  +AF   +   SR+ K           
Sbjct: 123 HGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADFVGTL 182

Query: 187 PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246
             + E      ++VVA PLT++TR +I    + A+ P  +L+N+GRGP VDE  L  AL 
Sbjct: 183 SDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALK 242

Query: 247 EGRLGGAGLDVFENEP-------HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           E  + GA +DV+   P               L NV++ PH    T ET +   D    N+
Sbjct: 243 ERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRIDEAAENI 302

Query: 300 EAHFLNKPLL 309
             +   +PLL
Sbjct: 303 RRYLRGEPLL 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  167 bits (424), Expect = 1e-49
 Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 25/265 (9%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           D E++  LP L+++   + G + VD+   K+KG+ V N     T+ VA     ++L++L 
Sbjct: 54  DKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLG 113

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFT----------GKTVGIIGLGRIGMAVAKRAEAFS 167
           R+   DRYV+SG++ +        FT          GK  GIIGLG IG  VAK A+AF 
Sbjct: 114 RINYYDRYVKSGEYSESPI-----FTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 168 CPINYYSRTEKPNLKYKYYPSVV--ELASNCHILVVACPLTEETRHIINREVIDALGPKG 225
             + YYS T   N   + Y  V   EL     I+ +  PL E+T+++I  + +  L    
Sbjct: 169 AKVVYYS-TSGKNKNEE-YERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGA 226

Query: 226 VLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF----GLENVVLMPHVG 281
           +LIN+GRG  V+E++L  AL E  +  AGLDV E EP             E +++ PH+ 
Sbjct: 227 ILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIA 285

Query: 282 SGTVETRKTMADLVLGNLEAHFLNK 306
             + E RKT+ + V  N++  FL  
Sbjct: 286 WASKEARKTLIEKVKENIKD-FLEG 309

Length = 311

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  161 bits (410), Expect = 2e-47
 Identities = 95/272 (34%), Positives = 139/272 (51%), Gaps = 33/272 (12%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DAE+++ LP+L+++++ S G D +D+  C+E+G+ V N PD     VA+ A  L+LA+ R
Sbjct: 54  DAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSR 113

Query: 118 RLCESDRYVRSGKWKKGDYKLT--TKF--TGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
           +L E+    R+   ++GD+       F   GKT+G++G GRIG  VA+ A  F   +  Y
Sbjct: 114 KLREA--IERT---RRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLAY 168

Query: 174 SRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
                  L  +    Y S+ EL     I+ +  P T +T H+INRE    + P  VLIN 
Sbjct: 169 DVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINT 228

Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE---------------------LF 269
            RG  VD   LV AL EG+L GAGLDV E E  + EE                     L 
Sbjct: 229 ARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALL 288

Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
              NV++ PHV   T E  + + D  + N++A
Sbjct: 289 RKPNVIITPHVAYNTKEALERILDTTVENIKA 320

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  157 bits (400), Expect = 4e-46
 Identities = 93/304 (30%), Positives = 146/304 (48%), Gaps = 22/304 (7%)

Query: 18  QELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVG 77
             LE+ F+  +    +   Q  +  +   +  + N  A  DA  + A P+L+++   + G
Sbjct: 19  SPLEQAFDELQLHDATTPEQVAERLRG-AQVAISNKVA-LDAAALAAAPQLKLILVAATG 76

Query: 78  LDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--- 134
            + VD+   +E+G+ V N     T  VA   + L+LA+  RL +  + V +G+W++    
Sbjct: 77  TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQF 136

Query: 135 ---DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI---NYYSRTEKPN-LKYKYYP 187
              D+ +  +  GKT+G++G G +G AVA+ AEAF   +       R  +P+ L      
Sbjct: 137 CLLDFPIV-ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLD--- 192

Query: 188 SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247
              EL      L + CPLTE TRH+I    +  + P  +LIN  RG  VDE+ L  AL  
Sbjct: 193 ---ELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS 249

Query: 248 GRLGGAGLDVFENEPHV---PEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFL 304
           G LGGA  DV   EP V   P     +  +++ PH   G+ E R+ +   +  N  A F 
Sbjct: 250 GHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFA 309

Query: 305 NKPL 308
            KPL
Sbjct: 310 GKPL 313

Length = 317

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  158 bits (401), Expect = 4e-46
 Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 26/270 (9%)

Query: 58  DAELIDALPKLEIV--SSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAV 115
           DAEL+   P+L  V  ++ SV    V      E+G+ VT+  D   + VA+  +  +L  
Sbjct: 63  DAELLARAPRLRAVVHAAGSV-RGLVT-DAVWERGILVTSAADANAEPVAEFTLAAILLA 120

Query: 116 LRRLCESDRYVRSGKWKKGDYKLTTK-FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
           LRR+       R+G+      +   +   G+TVGI+G GRIG AV +    F   +  Y 
Sbjct: 121 LRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYD 180

Query: 175 R-----------TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
                        E  +L         EL +   ++ +  PLT ETR +I+  ++  +  
Sbjct: 181 PYLPAAEAAALGVELVSLD--------ELLARSDVVSLHAPLTPETRGMIDARLLALMRD 232

Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGS 282
               IN  RG  VDE  L++ L  GRL  A LDV + EP  P+  L  L NV+L PH+  
Sbjct: 233 GATFINTARGALVDEAALLAELRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAG 291

Query: 283 GTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
            T + R+ + D  L  LE     +PLL  V
Sbjct: 292 STGDERRRLGDYALDELERFLAGEPLLHEV 321

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  157 bits (399), Expect = 4e-46
 Identities = 84/249 (33%), Positives = 124/249 (49%), Gaps = 19/249 (7%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           D E I+    L+ ++    GL+ +D+   KEKG+ + N P+   D V + A+G++LA+  
Sbjct: 53  DKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFN 112

Query: 118 RLCESDRYVRSGKWKK----GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
           +L  +D+ VR+G W +    G      +  GKTVGIIG G +G A AKR   F C +  Y
Sbjct: 113 KLNRADQEVRNGIWDREGNRGV-----ELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAY 167

Query: 174 SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
            + +     Y    S+  L     IL +  PLT ETR ++N+E I +       IN  RG
Sbjct: 168 DKYKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARG 227

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENE----------PHVPEELFGLENVVLMPHVGSG 283
             V  ++LV AL  G++ GA LDV E E          P   E L     V+L PH+   
Sbjct: 228 KVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGW 287

Query: 284 TVETRKTMA 292
           T E+ + +A
Sbjct: 288 TFESYEKIA 296

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  156 bits (397), Expect = 1e-45
 Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 27/261 (10%)

Query: 48  AVVGNATAGADA--------ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDV 99
            V  +A    DA          +D  P L+ ++    G++ +D+    ++G+ V NTP  
Sbjct: 23  EVKEDALEDPDALIVRSDKLHDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGA 82

Query: 100 LTDDVADLAIGLMLAVLRRLCESDRYV--------RSGKWKKGDYKLTTKFTGKTVGIIG 151
             + VA+L I +MLA+ R + ++ ++V          G  K     + T+  GKT+G+IG
Sbjct: 83  NANAVAELVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIG 142

Query: 152 LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK------YYPSVVELASNCHILVVACPL 205
           LG IG  VA  A A    +  Y         +K         S+ EL +    + +  PL
Sbjct: 143 LGNIGRLVANAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPL 202

Query: 206 TEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP 265
           T+ETR +IN E++  + P  +L+N  RG  VDE  L+ AL EG+LGG  +  F      P
Sbjct: 203 TDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGY-VTDFPE----P 257

Query: 266 EELFGLENVVLMPHVGSGTVE 286
             L  L NV+  PH+G+ T E
Sbjct: 258 ALLGHLPNVIATPHLGASTEE 278

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  151 bits (383), Expect = 2e-43
 Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 26/267 (9%)

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
            +  +  L+ +  +S G+D + +   K+KG+ +TN   + +  +A+  +G +L + + L 
Sbjct: 54  DLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLK 113

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC----------PI 170
           ++ +  +  KWK        +  GKT+  +G G IG  +AKR +AF             +
Sbjct: 114 KAYKNQKEKKWKM--DSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDV 171

Query: 171 NYYSRT-EKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
            Y+ +      L         E+     I+V   PLTEET H+ +    + +    + IN
Sbjct: 172 EYFDKCYPLEELD--------EVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFIN 223

Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVET 287
           +GRGP VDE  L+ AL   ++ GA LDVFE EP +P++  L+ L+NV++ PH+ SG  E 
Sbjct: 224 VGRGPSVDEDALIEALKNKQIRGAALDVFEEEP-LPKDSPLWDLDNVLITPHI-SGVSEH 281

Query: 288 R-KTMADLVLGNLEAHFLNKPLLTPVV 313
             + + D+   NL++   +  LL  VV
Sbjct: 282 FNERLFDIFYENLKSFLEDGELLKNVV 308

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  150 bits (381), Expect = 2e-43
 Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 13/238 (5%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E+++A PKL  +  F +G ++VD+    ++G+ V N P   T  VA+L IG ++ + R
Sbjct: 55  TEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLAR 114

Query: 118 RLCESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
           RL + +     G W K   G +++     GKT+GIIG G IG  ++  AEA    + +Y 
Sbjct: 115 RLPDRNAAAHRGIWNKSATGSHEVR----GKTLGIIGYGHIGSQLSVLAEALGMRVIFYD 170

Query: 175 RTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
             EK  L   +   S+ EL +    + +  P T  T+++I  E I  +    +LIN  RG
Sbjct: 171 IAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-----GLENVVLMPHVGSGTVE 286
             VD   L  AL  G L GA +DVF  EP    E F     GL NV+L PH+G  T E
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEE 288

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  149 bits (379), Expect = 8e-43
 Identities = 79/254 (31%), Positives = 113/254 (44%), Gaps = 27/254 (10%)

Query: 47  RAVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDV 104
             +     +   AEL++ L +  +  +S+ S+G D +D+   KE G++V+N      + V
Sbjct: 46  DGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVT-YSPNSV 104

Query: 105 ADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTK----FTGKTVGIIGLGRIGMAVA 160
           AD  + LML  LR+  +  +          DY L           TVG+IG GRIG AV 
Sbjct: 105 ADYTVMLMLMALRKYKQIMKRAEVN-----DYSLGGLQGRELRNLTVGVIGTGRIGQAVI 159

Query: 161 KRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVID 219
           K    F C I  Y       +K Y  Y  +  L     I+ +  PLTEET H+IN+E I 
Sbjct: 160 KNLSGFGCKILAYDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIA 219

Query: 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE--------------PHVP 265
            +    ++IN  RG  +D   L+  L  G++GGA LDV E E                  
Sbjct: 220 KMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNREL 279

Query: 266 EELFGLENVVLMPH 279
             L    NV+L PH
Sbjct: 280 AILRSFPNVILTPH 293

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  147 bits (374), Expect = 3e-42
 Identities = 84/280 (30%), Positives = 124/280 (44%), Gaps = 47/280 (16%)

Query: 53  ATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDV---------LTDD 103
                   L+  LP L+ + S   G+D +             + PDV         L   
Sbjct: 44  LVWKPPPGLLARLPNLKAIFSLGAGVDHLL---------ADPDLPDVPIVRLVDPGLAQG 94

Query: 104 VADLAIGLMLAVLRRLCESDRYV---RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
           +A+  +  +L + R +   DRY    R G WK    +   +     VG++GLG +G AVA
Sbjct: 95  MAEYVLAAVLRLHRDM---DRYAAQQRRGVWKPLPQRPAAERR---VGVLGLGELGAAVA 148

Query: 161 KRAEAFSCPINYYSRTEKPNLKYKYYPSVVELA---------SNCHILVVACPLTEETRH 211
           +R  A   P++ +SR+ K          V             +   ILV   PLT ETR 
Sbjct: 149 RRLAALGFPVSGWSRSPKD------IEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRG 202

Query: 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LF 269
           I+N E++  L     LIN+GRGPH+ E +L++AL  G L GA LDVFE EP +P +  L+
Sbjct: 203 ILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEP-LPADHPLW 261

Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLL 309
               V + PH+ + T     + A  V  N+      +PL 
Sbjct: 262 RHPRVTVTPHIAAIT--DPDSAAAQVAENIRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  147 bits (374), Expect = 5e-42
 Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 29/275 (10%)

Query: 57  ADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLA 114
            DA +++ L +L +  ++    G + VD+   KE G+ V   P      VA+ A+ L+LA
Sbjct: 56  LDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLA 115

Query: 115 VLRRLCESDRYVRSGKWKKGDYKLT--TKFT--GKTVGIIGLGRIGMAVAKRAEAFSCPI 170
           + R++  +   VR     +G++ L     F   GKTVG+IG G+IG A A+  + F C +
Sbjct: 116 LNRKIHRAYNRVR-----EGNFSLDGLLGFDLHGKTVGVIGTGKIGQAFARILKGFGCRV 170

Query: 171 NYYSRTEKPNLKYKY--YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV-L 227
             Y     P L      Y  + EL +   I+ + CPLT ET H+IN E I A    GV L
Sbjct: 171 LAYDPYPNPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETI-AKMKDGVML 229

Query: 228 INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH--------------VPEELFGLEN 273
           IN  RG  +D + L+ AL  G++GG GLDV+E E                V   L    N
Sbjct: 230 INTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLARLLSFPN 289

Query: 274 VVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL 308
           V++  H    T E    +A+  L NL+     KPL
Sbjct: 290 VLITGHQAFFTKEALTNIAETTLENLDDFEAGKPL 324

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  145 bits (368), Expect = 2e-41
 Identities = 85/273 (31%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 47  RAVVGNATAGADAELIDALPKLEIVSSFSVGLDK-VDMVKCKEKGVRVTNTPDVLTDDVA 105
            A+V    +  + E + A P +  V     G++  V+     + G R TN      + VA
Sbjct: 30  DALV-WTGSAREPERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVA 88

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKW-KKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE 164
           + A+ L+LA LR+L       R+  W    +  L T   G TV I+G G IG A+     
Sbjct: 89  EHALALLLAGLRQL---PARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLA 145

Query: 165 AFSCPINYYSRTEKP-NLKYKYYPS--VVELASNCHILVVACPLTEETRHIINREVIDAL 221
            F   +   +R+ +P     +  P+  + E+  +   +V+A PLT ETRH+++   + A+
Sbjct: 146 PFGAKVIAVNRSGRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAM 205

Query: 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPH 279
            P   L+N+ RGP VD   LV AL  G + GA LDV + EP +P+   L+ L N ++ PH
Sbjct: 206 KPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEP-LPDGHPLWSLPNALITPH 264

Query: 280 VGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
           V +     R  +A+ V  N+ A    +PLL  V
Sbjct: 265 VANTPEVIRPLLAERVAENVRAFAAGEPLLGVV 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  141 bits (358), Expect = 5e-40
 Identities = 82/264 (31%), Positives = 123/264 (46%), Gaps = 23/264 (8%)

Query: 55  AGADAELIDALPKLEIVSSFSVGLDKV-DMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
           A    E + ALP+L +V + S G D V  ++    +GV + N   V     A+LA+ L+L
Sbjct: 48  APPVLEALRALPRLRVVQTLSAGYDGVLPLLP---EGVTLCNARGVHDASTAELAVALIL 104

Query: 114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
           A LR L    R    G+W+    + T     + V I+G G IG A+ +R   F   +   
Sbjct: 105 ASLRGLPRFVRAQARGRWE---PRRTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTRV 161

Query: 174 SRTEKPNLKYKYYPSVV------ELASNCHILVVACPLTEETRHIINREVIDALGPKGVL 227
           +RT +P         V        L     ++V+  PLT+ETR +++ E +  +    +L
Sbjct: 162 ARTARPG------EQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALL 215

Query: 228 INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTV 285
           +N+ RGP VD   LV+ L  GRL  A LDV + EP +P    L+    V++ PHVG  T 
Sbjct: 216 VNVARGPVVDTDALVAELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATP 273

Query: 286 ETRKTMADLVLGNLEAHFLNKPLL 309
                   LV   L  +   +PL 
Sbjct: 274 AFLPRAYALVRRQLRRYAAGEPLE 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  143 bits (361), Expect = 8e-40
 Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 30/278 (10%)

Query: 49  VVGNATAGADAELIDALPKL--EIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVAD 106
           V+G  T      L  AL K   +  S+ +VG + VD+    + G+ V NTP VLT+  A+
Sbjct: 66  VIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAE 125

Query: 107 LAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTG-----KTVGIIGLGRIGMAVAK 161
           LA  L LA  RR+ E+D ++R+G +   +  L   F G     +TVG+IG GRIG A A+
Sbjct: 126 LAASLSLAAARRIVEADEFMRAGLY---EGWLPHLFVGNLLKGQTVGVIGAGRIGSAYAR 182

Query: 162 R-AEAFSCPINYY-----SRTEK--------------PNLKYKYYPSVVELASNCHILVV 201
              E F   + YY     +R EK                + +K   S+ E+     ++ +
Sbjct: 183 MMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISL 242

Query: 202 ACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE 261
              L + T H+IN+E +  +  + VL+N  RGP +DE  LV  L    +   GLDVFE+E
Sbjct: 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE 302

Query: 262 PHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           P++   L  ++N V++PH+ S +  TR+ MA L   N+
Sbjct: 303 PYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNV 340

Length = 386

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  139 bits (351), Expect = 1e-38
 Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 23/258 (8%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLT---DDVADLAIGLMLA 114
           DA++I    +++++  F VGL+ VD+    + G++V   P   T      A++AI LML 
Sbjct: 73  DADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLG 132

Query: 115 VLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
           +LR+  E    +++   ++    +     GKTV I+G G IG+ +AKR   F   +    
Sbjct: 133 LLRKQNEMQISLKA---RRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATR 189

Query: 175 R--TEKPNLKYKYYP--------------SVVELASNCHILVVACPLTEETRHIINREVI 218
           R  T +P                       + E A    I+V+ C LT+ET  I+N E +
Sbjct: 190 RSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249

Query: 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLM 277
            ++    +L+NI RG  +D   +++AL  G LGG  +DV  +EP  P++ +    NV++ 
Sbjct: 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT 309

Query: 278 PHVGSGTVETRKTMADLV 295
           PHV   T  + ++M  +V
Sbjct: 310 PHVAGVTEYSYRSMGKIV 327

Length = 347

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  135 bits (342), Expect = 2e-37
 Identities = 87/269 (32%), Positives = 128/269 (47%), Gaps = 28/269 (10%)

Query: 48  AVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
            VV   T   D E+ + L +  I  ++  S G+D +D+   KE G+++TN P      +A
Sbjct: 47  GVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIA 106

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGK-----TVGIIGLGRIGMAVA 160
           + A+   L +LR   E DR V      KGD++      G+     TVGIIG GRIG A A
Sbjct: 107 EFAVTQALNLLRNTPEIDRRVA-----KGDFRWAPGLIGREIRDLTVGIIGTGRIGSAAA 161

Query: 161 KRAEAFSCPINYYSRTEKPNLK--YKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218
           K  + F   +  Y     P L+    YY S+ +L     I+ +  PLT+E  H+IN E  
Sbjct: 162 KIFKGFGAKVIAYDPYPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAF 221

Query: 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE--------------PHV 264
             +    +L+N  RG  VD + L+ AL  G++ GA LD +ENE                V
Sbjct: 222 AKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEV 281

Query: 265 PEELFGLENVVLMPHVGSGTVETRKTMAD 293
            +EL  + NV++ PH+   T    K M +
Sbjct: 282 LKELIAMPNVLITPHIAFYTDTAVKNMVE 310

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  131 bits (330), Expect = 6e-36
 Identities = 80/258 (31%), Positives = 128/258 (49%), Gaps = 21/258 (8%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E +  LPKL++++  + G + VD+V  KE G+ V N     +  V +  +G++ A+  
Sbjct: 56  TRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115

Query: 118 RLCE------SDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN 171
            L        SDR+    ++   DY +T    G T+G+ G G +G  V + A+A    + 
Sbjct: 116 SLMGWYRDQLSDRWATCKQFCYFDYPIT-DVRGSTLGVFGKGCLGTEVGRLAQALGMKVL 174

Query: 172 YYSRTEKPNLKYKYYP--SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
           Y         +  Y P   V++ A    I+ + CPLTE T+++IN E +  + P   LIN
Sbjct: 175 YAEHKGASVCREGYTPFEEVLKQAD---IVTLHCPLTETTQNLINAETLALMKPTAFLIN 231

Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-------LFGLENVVLMPHVGS 282
            GRGP VDE+ L+ AL  G++ GA LDV   EP  PE+          L N+++ PH+  
Sbjct: 232 TGRGPLVDEQALLDALENGKIAGAALDVLVKEP--PEKDNPLIQAAKRLPNLLITPHIAW 289

Query: 283 GTVETRKTMADLVLGNLE 300
            +     T+ + V  N+E
Sbjct: 290 ASDSAVTTLVNKVAQNIE 307

Length = 314

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  129 bits (327), Expect = 1e-34
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
            E++ A  KL  +  F +G ++VD+    ++G+ V N P   T  VA+L IG ++ +LR 
Sbjct: 67  EEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRG 126

Query: 119 LCESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
           + E +     G W K   G +++     GKT+GI+G G IG  ++  AE+    + +Y  
Sbjct: 127 IPEKNAKAHRGGWNKSAAGSFEVR----GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDI 182

Query: 176 TEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234
            +K  L   +   S+ EL +   ++ +  P T  T+++I  E +  + P  +LIN  RG 
Sbjct: 183 EDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242

Query: 235 HVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-----GLENVVLMPHVGSGTVE 286
            VD   L  AL  G L GA +DVF  EP    + F     GL+NV+L PH+G  T E
Sbjct: 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299

Length = 409

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  126 bits (319), Expect = 3e-34
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 90  GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGI 149
           G  VT    V  + +A+  +  +LA  +RL E      + +W+    +      G T+GI
Sbjct: 85  GPVVTCARGVAAEAIAEFVLAAILAAAKRLPEI-WVKGAEQWR---REPLGSLAGSTLGI 140

Query: 150 IGLGRIGMAVAKRAEAFSCPINYYSRTEKPN--LKYKYYPSVVELASNCHILVVACPLTE 207
           +G G IG A+A+RA A    +    R+ +P+     +    + EL +    LV+A PLT 
Sbjct: 141 VGFGAIGQALARRALALGMRVLALRRSGRPSDVPGVEAAADLAELFARSDHLVLAAPLTP 200

Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
           ETRH+IN +V+    P   LINI RG  VD+  L+ AL  GR+  A LDV + EP +PE 
Sbjct: 201 ETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEP-LPEG 259

Query: 268 --LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
             L+    V L PH  +   + R+ +AD  L NL  +   +PL   V
Sbjct: 260 HPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLHDLV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  127 bits (322), Expect = 4e-34
 Identities = 77/261 (29%), Positives = 118/261 (45%), Gaps = 15/261 (5%)

Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I   P L++  +  +G D VD+    E G+ V       +  VA+  + ++LA++R 
Sbjct: 106 AERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRN 165

Query: 119 LCESDRYVRSGKWKKGD-----YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
              S R    G W   D     Y L     G TVGI+G GRIG+AV +R + F   ++Y 
Sbjct: 166 YEPSHRQAVEGGWNIADCVSRSYDLE----GMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 174 SRTEKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
            R   P      L   Y+ S   L S C ++ + CPL  ET H+ + +V+  +     L+
Sbjct: 222 DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV 281

Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVET 287
           N  RG  VD   +V AL  G L G   DV+  +P   +  +  +    + PH+   T+  
Sbjct: 282 NTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSA 341

Query: 288 RKTMADLVLGNLEAHFLNKPL 308
           +   A      LE  F  +P+
Sbjct: 342 QARYAAGTREILECFFEGRPI 362

Length = 385

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  125 bits (316), Expect = 2e-33
 Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 29/267 (10%)

Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I     L++  +  +G D VD+    ++G+ V          VA+  + ++L ++R 
Sbjct: 76  AERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRN 135

Query: 119 LCESDRYVRSGKWKKGD-----YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
                     G W   D     Y L     GKTVG +G GRIG+ V +R + F   + YY
Sbjct: 136 YVPGHEQAIEGGWNVADVVKRAYDLE----GKTVGTVGAGRIGLRVLRRLKPFDVHLLYY 191

Query: 174 SRTEKPNLKYK-----YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
            R   P    K      +  + ++ S C ++ + CPL  ET  + N+E++  +     L+
Sbjct: 192 DRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLV 251

Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEP--------HVPEELFGLENVVLMPHV 280
           N  RG   D   +  AL  G L G   DV+  +P         +P       N  + PH+
Sbjct: 252 NTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMP-------NNAMTPHI 304

Query: 281 GSGTVETRKTMADLVLGNLEAHFLNKP 307
              T++ +   A      LE  F  +P
Sbjct: 305 SGTTLDAQARYAAGTKEILERFFEGEP 331

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  124 bits (313), Expect = 4e-33
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 41/293 (13%)

Query: 54  TAGADAELIDALPKLEIVSSFSVGLDK-VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLM 112
               DAE +   P L +V  FS G D  +     K+  V +     +    +A+  IG  
Sbjct: 44  HPHPDAEDV---PNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTW 100

Query: 113 LAVLRRLCESDRYV---RSGKWKKGDYKLTTK-FTGKTVGIIGLGRIGMAVAKRAEAFSC 168
           L +        +Y+   +   W +     + +   GK VGI+G G IG   A+ A+A   
Sbjct: 101 LVLSHHF---LQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGM 157

Query: 169 PINYYSRTEKPNLK------Y--------------KYY-----PSVVE-LASNCHILVVA 202
            +  Y+R+ +P  +      Y               ++      S+ E L  +  +LVV+
Sbjct: 158 EVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVS 217

Query: 203 CPLTEETRHIINREVIDALGPKG-VLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE 261
            PLT  T+H++  E  + L  +   + NI RG  VD   LV+AL  G++ GA LDV + E
Sbjct: 218 LPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPE 277

Query: 262 PHVPE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
           P +P    L+   NV++ PHV   T E      D++  NLE     +PL+  V
Sbjct: 278 P-LPADHPLWSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPLINLV 329

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score =  117 bits (294), Expect = 8e-31
 Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 11/256 (4%)

Query: 57  ADAELIDALP----KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLM 112
           A+A LI        K +++ S S G+D +D+    E  V  +N     +  VA+ A  L+
Sbjct: 35  AEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALL 93

Query: 113 LAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY 172
           LA  + +CE++  +++G +K+   KL      K++GI+G G IG  VA  A+AF   I  
Sbjct: 94  LAWAKNICENNYNMKNGNFKQSPTKL---LYNKSLGILGYGGIGRRVALLAKAFGMNIYA 150

Query: 173 YSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
           Y+R+   +     Y    ++      ++++ PLT+ETR +IN +++        +IN+ R
Sbjct: 151 YTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210

Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG-TVETRKTM 291
              VD+ ++++ L          DV+ NEP + E     +NV+L PHV  G + E  +  
Sbjct: 211 ADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETN--PDNVILSPHVAGGMSGEIMQPA 268

Query: 292 ADLVLGNLEAHFLNKP 307
             L   N++  F  KP
Sbjct: 269 VALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  111 bits (280), Expect = 3e-28
 Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 31/230 (13%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           +  L++   K++ V + ++G D +D    KE+G+   N P    + VA+  +  +L + +
Sbjct: 49  NEALLEG-SKVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQ 107

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS--R 175
           R   S +                   GKTVGI+G+G +G  +A+R EA    +      R
Sbjct: 108 RQGFSLK-------------------GKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPR 148

Query: 176 TEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIG 231
            E        + S+ EL +   I+ +  PLT +    T H+++ + + AL P  +LIN  
Sbjct: 149 AEAEGDPG--FVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINAS 206

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVL-MPHV 280
           RG  +D + L++ L  G+     LDV+ENEP +  EL  L+ V +  PH+
Sbjct: 207 RGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLEL--LDKVDIATPHI 254

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  108 bits (273), Expect = 2e-27
 Identities = 74/275 (26%), Positives = 119/275 (43%), Gaps = 27/275 (9%)

Query: 48  AVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
           AV+      AD E ++   +  I  V + +VG + +D+   KE G ++   P    + +A
Sbjct: 47  AVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIA 106

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
           +LA  L + + R    +     +  +K   +  + +    TVGIIG GRIG+  AK  + 
Sbjct: 107 ELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKG 166

Query: 166 FSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACP-LTEETRHIINREVIDALGP 223
               +  Y        K    + S+ EL     I+ +  P +  +   +IN+E I  +  
Sbjct: 167 LGAKVIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKD 226

Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-------LEN--- 273
             +LIN  RG   DE  ++ AL  G+L G G DV  NE    +E+F        +E+   
Sbjct: 227 GAILINTARGELQDEEAILEALESGKLAGFGTDVLNNE----KEIFFKDFDGDKIEDPVV 282

Query: 274 ---------VVLMPHVGSGTVETRKTMADLVLGNL 299
                    V+L PH+GS T E    M +    NL
Sbjct: 283 EKLLDLYPRVLLTPHIGSYTDEALSNMIETSYENL 317

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  106 bits (267), Expect = 8e-27
 Identities = 75/247 (30%), Positives = 108/247 (43%), Gaps = 14/247 (5%)

Query: 49  VVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLA 108
           VV   ++   A+    L +L  V + + G D V       + V VT+   +    VA+  
Sbjct: 41  VVWGNSSDNLADAARRLTRLRWVQALAAGPDAVLAAGFAPE-VAVTSGRGLHDGTVAEHT 99

Query: 109 IGLMLAVLRRLCESDRYVRSGKWKK--------GDYKLTTKFTGKTVGIIGLGRIGMAVA 160
           + L+LA +RRL E     R  +W                T   G  V I G G IG  +A
Sbjct: 100 LALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIGQRLA 159

Query: 161 KRAEAFSCPINYYSRTEKPNLKYKYYP--SVVELASNCHILVVACPLTEETRHIINREVI 218
               A    +   +R+      +       + EL     +LV+  P T  T H ++ EV+
Sbjct: 160 PLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALDAEVL 219

Query: 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVL 276
            AL     ++N+GRG  VDE  LV+AL  GRLGGA LDV   EP +P    L+   N++L
Sbjct: 220 AALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEP-LPASSPLWDAPNLIL 278

Query: 277 MPHVGSG 283
            PH   G
Sbjct: 279 TPHAAGG 285

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 93.4 bits (232), Expect = 7e-22
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 23/259 (8%)

Query: 63  DALPKLE-----IVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           D  PKLE      ++  + G D  D+   K+  + ++N P    + +A+ ++ + L ++R
Sbjct: 60  DVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR 119

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
           R  + +R V++  +      ++      TV IIG GRIG A AK    F   I  Y    
Sbjct: 120 RFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179

Query: 178 KPNLKY-KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
             +L +  Y  SV E   +  I+ +  P  +E+ H+ ++ + D +    +L+N  RG  +
Sbjct: 180 NKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI 239

Query: 237 DERELVSALVEGRLGGAGLDVFENEPH--------------VPEELFGLENVVLMPHVGS 282
           +  +L++A+ +G L GA +D +ENE                   EL   E +++ PH+  
Sbjct: 240 NTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAF 299

Query: 283 GTVETRKTMADLVLGNLEA 301
            + E    + +LV G L A
Sbjct: 300 FSDE---AVQNLVEGGLNA 315

Length = 330

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 9/256 (3%)

Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I     LE++ +  +G D +D+      G+ V          VA+  +  +L +LR 
Sbjct: 113 AERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172

Query: 119 LCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
                  V SG+W   G         GKTVG +G GRIG  + +R + F+C + Y+ R +
Sbjct: 173 FLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232

Query: 178 KP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIG 231
                      K+   +  +   C ++V+  PLTE+TR + N+E I  +  KGVLI N  
Sbjct: 233 MDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKM-KKGVLIVNNA 291

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-LENVVLMPHVGSGTVETRKT 290
           RG  +D + +  A   G +GG G DV+  +P   +  +  + N  + PH+   T++ +  
Sbjct: 292 RGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLR 351

Query: 291 MADLVLGNLEAHFLNK 306
            A  V   L+ +F  +
Sbjct: 352 YAAGVKDMLDRYFKGE 367

Length = 386

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 24/246 (9%)

Query: 75  SVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG 134
           S G D  D+    +  + ++N P    + +A+  +   + ++R   +    VR   ++  
Sbjct: 77  SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWE 136

Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAK-RAEAFSCPINYYSRTEKPNLKYK----YYPSV 189
              L+       V +IG GRIG+AVAK  A+ +   +  Y     PN K      Y  ++
Sbjct: 137 PPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPF--PNAKAATYVDYKDTI 194

Query: 190 VELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGR 249
            E      I+ +  P T+   ++ N ++        V +N  RG  VD + L+ AL  G 
Sbjct: 195 EEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGL 254

Query: 250 LGGAGLDVFENE-PHVP-------------EELFGLENVVLMPHVGSGTVETRKTMADLV 295
           + GA LD +E E P  P             E L   E+V+L PH+   T    K   +L+
Sbjct: 255 IKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVK---NLI 311

Query: 296 LGNLEA 301
           +  L+A
Sbjct: 312 VDALDA 317

Length = 332

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 84.8 bits (210), Expect = 7e-19
 Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 6/144 (4%)

Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELA---SNCHILVVA 202
           T+GI+G G +G  VA+  + +  P+  +SR+ K     + +    EL+   S   +L+  
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINL 197

Query: 203 CPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP 262
            P T ET  IIN+++++ L     L+N+ RG HV E +L++AL  G++ GA LDVF  EP
Sbjct: 198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREP 257

Query: 263 HVPEE--LFGLENVVLMPHVGSGT 284
            +P E  L+    V + PHV + T
Sbjct: 258 -LPPESPLWQHPRVAITPHVAAVT 280

Length = 312

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 30/221 (13%)

Query: 67  KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV 126
           ++  V + ++G D +D+    E G+  ++ P      V D  +G +L +  R        
Sbjct: 58  RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-------- 109

Query: 127 RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNLKYK 184
                 +G          +T G++G G +G  + +          +    R E       
Sbjct: 110 ------EG-----VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEG--DG 156

Query: 185 YYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRGPHVDERE 240
            + S+  +   C ++ +  PLT+E    TRH+++   + +L P   LIN  RG  VD + 
Sbjct: 157 DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQA 216

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVL-MPHV 280
           L  AL+ G    A LDV+E EP +  EL   +   +  PH+
Sbjct: 217 LREALLSGEDLDAVLDVWEGEPQIDLEL--ADLCTIATPHI 255

Length = 381

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 24/250 (9%)

Query: 58  DAELIDALPKLEIV----SSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
           D E+++A P ++ +    S +S     VD+   +E G+ VT   D   + V +  I  ++
Sbjct: 59  DEEVLEACPNIKYIGMCCSLYSEESANVDIAAARENGITVTGIRDYGDEGVVEYVISELI 118

Query: 114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
            +L             +WK+   +LT    G  VGIIGLG  G  +A     F   + YY
Sbjct: 119 RLLHGFGGK-------QWKEEPRELT----GLKVGIIGLGTTGQMIADALSFFGADVYYY 167

Query: 174 SRTEKPNLK---YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
           SRT KP+ +    +Y P + EL     ++    P       ++  E  + LG   +L N 
Sbjct: 168 SRTRKPDAEAKGIRYLP-LNELLKTVDVICTCLPKNVI---LLGEEEFELLGDGKILFNT 223

Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKT 290
             GP  +   L   L     G    D         EEL    NV+        T +  + 
Sbjct: 224 SLGPSFEVEALKKWL--KASGYNIFDCDTAGALGDEELLRYPNVICTNKSAGWTRQAFER 281

Query: 291 MADLVLGNLE 300
           ++  VL NLE
Sbjct: 282 LSQKVLANLE 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 70/267 (26%), Positives = 113/267 (42%), Gaps = 51/267 (19%)

Query: 45  NIRAVVG-----NATAGADAELIDALPK----------LEIVSSFSVGLDKVDMVKCKEK 89
            ++AV G        A ADA ++ ++ K          ++ V + + G D VD    K+ 
Sbjct: 21  EVKAVPGRPIPVAQLADADALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQA 80

Query: 90  GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGI 149
           G+  +  P      V +     +L     L E D +                   +TVGI
Sbjct: 81  GIGFSAAPGCNAIAVVEYVFSSLLM----LAERDGFS---------------LHDRTVGI 121

Query: 150 IGLGRIGMAVAKRAEAFS-----CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACP 204
           +G+G +G  +  R EA       C      R ++ + +     S+ EL     IL    P
Sbjct: 122 VGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFR-----SLDELVQEADILTFHTP 176

Query: 205 LTEE----TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN 260
           L ++    T H+ + ++I +L P  +LIN  RG  VD   L++ L EG+     LDV+E 
Sbjct: 177 LFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEG 236

Query: 261 EPHVPEELFGLENV-VLMPHVGSGTVE 286
           EP +  EL  L+ V +  PH+   T+E
Sbjct: 237 EPELNVEL--LKKVDIGTPHIAGYTLE 261

Length = 378

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 15/221 (6%)

Query: 40  KAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKC-KEKGVRVTNTPD 98
                ++   V      A+  LI  L    ++ ++++G D  D+ +     G+       
Sbjct: 61  ALWSLDVVLKVKEPLTNAEYALIQKLG-DRLLFTYTIGADHRDLTEALARAGLTAIAVEG 119

Query: 99  VLTDDVADLAIGLM-LAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGM 157
           V    +   +IG   L+V       +           D        GKTV ++G G +G 
Sbjct: 120 VELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPDVA------GKTVVVVGAGVVGK 173

Query: 158 AVAKRAEAFS-----CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHI 212
             A+             IN  +  +   L  K    + E  +   ++V    L  +   I
Sbjct: 174 EAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGI 233

Query: 213 IN-REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGG 252
           +   E+++ + P  V++N+  G     + L + L+E   G 
Sbjct: 234 LVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGV 274

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	100.0
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.91
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.86
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.82
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.66
PLN02494	477	adenosylhomocysteinase	99.59
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.59
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.57
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.51
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.51
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.39
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.38
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.38
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.38
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.34
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.32
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.3
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.3
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.28
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.22
PLN02858	1378	fructose-bisphosphate aldolase	99.21
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.18
PLN02858	1378	fructose-bisphosphate aldolase	99.14
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.14
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.13
PLN02256	304	arogenate dehydrogenase	99.11
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.11
PLN02712	667	arogenate dehydrogenase	99.09
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.07
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.06
PRK08655	437	prephenate dehydrogenase; Provisional	99.02
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.02
PRK07417	279	arogenate dehydrogenase; Reviewed	98.96
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.96
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.96
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.95
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.93
PLN02712	667	arogenate dehydrogenase	98.91
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.9
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.9
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.9
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.89
PRK06545	359	prephenate dehydrogenase; Validated	98.89
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.88
PLN02688	266	pyrroline-5-carboxylate reductase	98.87
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.87
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.87
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.87
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.86
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.84
PRK08818	370	prephenate dehydrogenase; Provisional	98.84
PRK05225	487	ketol-acid reductoisomerase; Validated	98.84
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.84
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.83
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.81
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.77
PRK08507	275	prephenate dehydrogenase; Validated	98.75
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.75
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.73
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.72
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.72
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.71
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.71
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.71
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.7
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.7
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.69
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.69
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.67
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.67
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.65
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.64
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.64
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.63
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.62
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.62
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.59
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.59
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.56
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.54
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.53
PRK07680	273	late competence protein ComER; Validated	98.5
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.5
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.5
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.48
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.47
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.46
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.45
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.44
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.41
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.38
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.35
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.35
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.34
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.34
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.28
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.27
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.26
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.26
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.26
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.26
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.25
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.24
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.23
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.22
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.19
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.19
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.19
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.18
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.17
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.17
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.14
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.14
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.14
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.13
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.08
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.05
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.03
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.01
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.0
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.0
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.99
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.96
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
PRK06141	314	ornithine cyclodeaminase; Validated	97.95
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
PLN00203	519	glutamyl-tRNA reductase	97.94
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.94
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.94
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.92
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.91
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.9
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.82
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.8
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.77
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.75
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.74
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.72
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.71
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.7
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.69
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.68
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.68
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.65
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.64
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.6
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.58
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.55
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.55
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.52
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.51
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.51
PRK07340	304	ornithine cyclodeaminase; Validated	97.51
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.47
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.44
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.44
PTZ00117	319	malate dehydrogenase; Provisional	97.43
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.42
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.42
PRK08618	325	ornithine cyclodeaminase; Validated	97.41
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.39
PRK14982	340	acyl-ACP reductase; Provisional	97.38
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.38
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.38
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.37
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.36
PLN02477	410	glutamate dehydrogenase	97.35
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.34
PRK06046	326	alanine dehydrogenase; Validated	97.33
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.32
PRK06444	197	prephenate dehydrogenase; Provisional	97.31
PRK08291	330	ectoine utilization protein EutC; Validated	97.31
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.29
PRK14031	444	glutamate dehydrogenase; Provisional	97.28
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.28
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.27
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.26
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.26
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.25
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.25
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.24
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.21
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.18
PRK06823	315	ornithine cyclodeaminase; Validated	97.17
PRK06199	379	ornithine cyclodeaminase; Validated	97.12
PRK14030	445	glutamate dehydrogenase; Provisional	97.09
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.08
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.05
PRK06407	301	ornithine cyclodeaminase; Provisional	97.05
PRK07589	346	ornithine cyclodeaminase; Validated	96.98
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.97
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.93
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.93
PRK09414	445	glutamate dehydrogenase; Provisional	96.92
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.88
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.88
PRK06223	307	malate dehydrogenase; Reviewed	96.88
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.86
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.85
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.81
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.79
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.78
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.77
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	96.76
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.73
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.71
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.7
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.66
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.66
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.62
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.62
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.61
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.56
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.56
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.55
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.54
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.54
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.53
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.51
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.47
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.47
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.39
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.39
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.37
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.35
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.31
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.31
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.29
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.27
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.25
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.24
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.21
PRK11579	346	putative oxidoreductase; Provisional	96.21
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.18
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.17
PRK09496	453	trkA potassium transporter peripheral membrane com	96.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.11
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.09
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.08
PRK06270	341	homoserine dehydrogenase; Provisional	96.07
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.0
PRK12862	763	malic enzyme; Reviewed	96.0
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.98
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.98
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.96
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.93
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.93
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.91
PRK01713	334	ornithine carbamoyltransferase; Provisional	95.9
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.85
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.8
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.77
COG5322	351	Predicted dehydrogenase [General function predicti	95.72
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.7
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.68
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.68
PLN02527	306	aspartate carbamoyltransferase	95.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.66
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
PRK12861	764	malic enzyme; Reviewed	95.65
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.62
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.6
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.57
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.56
PRK10637	457	cysG siroheme synthase; Provisional	95.54
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.52
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.5
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.49
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.48
PRK06349	426	homoserine dehydrogenase; Provisional	95.46
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.45
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.39
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.38
COG0673	342	MviM Predicted dehydrogenases and related proteins	95.38
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.37
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.37
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.34
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.33
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.32
PRK10669	558	putative cation:proton antiport protein; Provision	95.28
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.25
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.21
PRK08223	287	hypothetical protein; Validated	95.21
PRK02102	331	ornithine carbamoyltransferase; Validated	95.16
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.15
PRK05086	312	malate dehydrogenase; Provisional	95.14
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.1
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.06
PLN02602	350	lactate dehydrogenase	95.06
COG2344	211	AT-rich DNA-binding protein [General function pred	95.05
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.03
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.02
PRK09496	453	trkA potassium transporter peripheral membrane com	95.0
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.99
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	94.98
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.93
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.91
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.91
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.88
PRK04284	332	ornithine carbamoyltransferase; Provisional	94.81
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	94.78
PLN02342	348	ornithine carbamoyltransferase	94.77
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.75
PRK04148	134	hypothetical protein; Provisional	94.75
PRK11891	429	aspartate carbamoyltransferase; Provisional	94.74
PRK06392	326	homoserine dehydrogenase; Provisional	94.71
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.7
PRK07877	722	hypothetical protein; Provisional	94.65
PRK07411	390	hypothetical protein; Validated	94.63
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.61
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.61
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.6
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.6
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.59
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.58
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.58
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.51
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	94.51
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.48
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.47
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.47
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.41
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	94.39
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.35
PRK07806	248	short chain dehydrogenase; Provisional	94.35
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.3
PRK13529	563	malate dehydrogenase; Provisional	94.29
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.25
CHL00194	317	ycf39 Ycf39; Provisional	94.17
PLN00106	323	malate dehydrogenase	94.09
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.09
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.06
PRK05442	326	malate dehydrogenase; Provisional	94.06
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.01
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.01
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.01
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.93
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	93.9
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	93.9
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.87
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.87
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.86
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	93.84
PTZ00325	321	malate dehydrogenase; Provisional	93.81
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.75
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	93.75
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.74
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.69
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.65
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.63
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.61
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.57
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.56
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.49
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.46
COG2910	211	Putative NADH-flavin reductase [General function p	93.32
PRK08192	338	aspartate carbamoyltransferase; Provisional	93.17
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.1
PLN03209	576	translocon at the inner envelope of chloroplast su	93.1
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	93.07
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	93.06
PRK10537	393	voltage-gated potassium channel; Provisional	92.89
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.86
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	92.85
PRK10206	344	putative oxidoreductase; Provisional	92.84
PRK08265	261	short chain dehydrogenase; Provisional	92.82
PLN02214	342	cinnamoyl-CoA reductase	92.81
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.69
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.61
PRK08328	231	hypothetical protein; Provisional	92.59
PRK14852	989	hypothetical protein; Provisional	92.58
PRK08374	336	homoserine dehydrogenase; Provisional	92.57
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.54
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	92.54
PRK12937	245	short chain dehydrogenase; Provisional	92.53
PRK08628	258	short chain dehydrogenase; Provisional	92.52
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.46
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.45
PRK06398	258	aldose dehydrogenase; Validated	92.43
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.41
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.4
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.4
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	92.38
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	92.37
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	92.28
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.24
PRK14804	311	ornithine carbamoyltransferase; Provisional	92.22
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	92.12
PRK14851	679	hypothetical protein; Provisional	92.09
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.08
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	92.08
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.08
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.08
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.02
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.97
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.95
PRK08324	681	short chain dehydrogenase; Validated	91.94
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.91
PRK06523	260	short chain dehydrogenase; Provisional	91.88
PRK15076	431	alpha-galactosidase; Provisional	91.87
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	91.8
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	91.77
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	91.76
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	91.75
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	91.71
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	91.6
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	91.59
PRK05865	854	hypothetical protein; Provisional	91.58
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	91.56
PLN02896	353	cinnamyl-alcohol dehydrogenase	91.53
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.49
PRK06197	306	short chain dehydrogenase; Provisional	91.42
PRK07825	273	short chain dehydrogenase; Provisional	91.41
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.41
PLN02427	386	UDP-apiose/xylose synthase	91.39
PRK06196	315	oxidoreductase; Provisional	91.31
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.29
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	91.25
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	91.23
PRK08264	238	short chain dehydrogenase; Validated	91.22
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	91.18
PRK08589	272	short chain dehydrogenase; Validated	91.12
PRK12367	245	short chain dehydrogenase; Provisional	91.07
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	91.06
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.99
PRK06153	393	hypothetical protein; Provisional	90.98
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	90.95
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.87
PRK05717	255	oxidoreductase; Validated	90.85
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.82
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	90.74
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	90.49
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	90.42
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	90.35
PRK05866	293	short chain dehydrogenase; Provisional	90.3
PRK08862	227	short chain dehydrogenase; Provisional	90.25
PRK06128	300	oxidoreductase; Provisional	90.25
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	90.25
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.2
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	90.19
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.18
PRK12828	239	short chain dehydrogenase; Provisional	90.11
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.11
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	90.09
PLN02206	442	UDP-glucuronate decarboxylase	90.08
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	90.05
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	90.05
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	90.03
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	90.0
PLN02383	344	aspartate semialdehyde dehydrogenase	89.95

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=2e-72  Score=526.08  Aligned_cols=309  Identities=34%  Similarity=0.536  Sum_probs=277.0

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeecC-CChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWTV-SDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +++|++++++.+...+.|++.+++..+.+. +.+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|+|
T Consensus         2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~i   80 (323)
T PRK15409          2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDNF   80 (323)
T ss_pred             CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecccc
Confidence            488999999888888888877765443221 22344556778899999875 4579999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC--CcccccccCCCEEEEEcCChHHHHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLGRIGMAV  159 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~igiiG~G~iG~~i  159 (313)
                      |+++|.++||+|+|+||+++++||||++++||+++|++..+++.+++|.|...  ....+.+|+|||+||||+|+||+.+
T Consensus        81 d~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~v  160 (323)
T PRK15409         81 DVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMAL  160 (323)
T ss_pred             cHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999732  1124678999999999999999999


Q ss_pred             HHHHH-hCCCCEEEecCCCCCcc----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          160 AKRAE-AFSCPINYYSRTEKPNL----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       160 A~~l~-~~G~~V~~~~~~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      |++++ +|||+|++||++.....    +. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus       161 a~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  239 (323)
T PRK15409        161 AQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP  239 (323)
T ss_pred             HHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence            99998 99999999998754321    22 24589999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          235 HVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       235 ~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      +||++||++||++|++.||+||||++||++.+ |||++|||++|||+||.|.+++.++...+++||.+|++|+++.+.||
T Consensus       240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999999998754 89999999999999999999999999999999999999999988886

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-72  Score=523.96  Aligned_cols=307  Identities=34%  Similarity=0.508  Sum_probs=276.4

Q ss_pred             CCceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +.+++++.++++.+...+.+...............++++.+.++++|++++ +.+++++++++.+|+||||++.++|+||
T Consensus         1 ~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~   79 (324)
T COG0111           1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDN   79 (324)
T ss_pred             CCcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccc
Confidence            357889999999998888887662222222222344446677899999998 7889999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      +|++++.++||.|+|+|+.|+.+||||+++++|++.|+++.++..++.|.|.+..+ .+.+|+|||+||||+|+||+.+|
T Consensus        80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-~g~el~gkTvGIiG~G~IG~~va  158 (324)
T COG0111          80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF-RGTELAGKTVGIIGLGRIGRAVA  158 (324)
T ss_pred             cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccccc-ccccccCCEEEEECCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987333 46799999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCc-c---ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          161 KRAEAFSCPINYYSRTEKPN-L---KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~-~---~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      +++++|||+|++||+..... .   +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus       159 ~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV  238 (324)
T COG0111         159 KRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV  238 (324)
T ss_pred             HHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence            99999999999999954432 2   2344578999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021388          237 DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLL  309 (313)
Q Consensus       237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  309 (313)
                      |++||++||++|+|+||+||||++||++++ |||++|||++|||+|+.|.++.+++...+++|+.+|++|+++.
T Consensus       239 de~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~  312 (324)
T COG0111         239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVV  312 (324)
T ss_pred             cHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999886 9999999999999999999999999999999999999999853

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=6.5e-71  Score=513.91  Aligned_cols=310  Identities=41%  Similarity=0.645  Sum_probs=280.2

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      |+.++.+..+.+...+.+.+.|++..+.+....+.++.+..+++|++++....++++++++++|+||+|++.|+||||||
T Consensus         2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vD   81 (324)
T COG1052           2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVD   81 (324)
T ss_pred             CcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCccc
Confidence            67788888888888889998888766653312111556778999999998788999999999999999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC---cccccccCCCEEEEEcCChHHHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD---YKLTTKFTGKTVGIIGLGRIGMAV  159 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---~~~~~~l~g~~igiiG~G~iG~~i  159 (313)
                      +++|+++||.|+|+|++++++||||++++||++.|++.++++.+++|.|....   ...+.+++|||+||||+|+||+++
T Consensus        82 l~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~av  161 (324)
T COG1052          82 LEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAV  161 (324)
T ss_pred             HHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998542   245778999999999999999999


Q ss_pred             HHHHHhCCCCEEEecCCCCC----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          160 AKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       160 A~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      |+++++|||+|.+|||++.+    ..++.+. +++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++
T Consensus       162 A~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~  240 (324)
T COG1052         162 ARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL  240 (324)
T ss_pred             HHHHhcCCCEEEEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc
Confidence            99999999999999998752    2223334 499999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeeEEEecCCCCCCCC-CCcccCCCc---eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021388          236 VDERELVSALVEGRLGGAGLDVFENEPHV-PEELFGLEN---VVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTP  311 (313)
Q Consensus       236 vd~~al~~al~~~~l~ga~lDV~~~Ep~~-~~~L~~~pn---v~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  311 (313)
                      ||++||++||++|++.||++|||+.||.+ +++|++++|   |++|||+|+.|.+++.+|.+.+++|+.+|++|+.+.++
T Consensus       241 VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~  320 (324)
T COG1052         241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE  320 (324)
T ss_pred             cCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999986 457777666   99999999999999999999999999999999999998


Q ss_pred             CC
Q 021388          312 VV  313 (313)
Q Consensus       312 v~  313 (313)
                      ||
T Consensus       321 v~  322 (324)
T COG1052         321 VN  322 (324)
T ss_pred             CC
Confidence            86

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=2.5e-70  Score=514.66  Aligned_cols=311  Identities=42%  Similarity=0.628  Sum_probs=278.0

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeec-CCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWT-VSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      |++|++++++.+...+.|++.+++..+.+ .+.+++++.+.++++|+++++...++++++++++|+||||++.|+|+|++
T Consensus         2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~i   81 (333)
T PRK13243          2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNI   81 (333)
T ss_pred             CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccccc
Confidence            57889998888877788887765544322 12244555677889999998766689999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC------cccccccCCCEEEEEcCChH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD------YKLTTKFTGKTVGIIGLGRI  155 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~igiiG~G~i  155 (313)
                      |++++.++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+..      ...+.+|.||+|||||+|.|
T Consensus        82 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~I  161 (333)
T PRK13243         82 DVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRI  161 (333)
T ss_pred             CHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHH
Confidence            999999999999999999999999999999999999999999999999997421      11467899999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEecCCCCCccc---cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          156 GMAVAKRAEAFSCPINYYSRTEKPNLK---YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       156 G~~iA~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      |+.+|++|++|||+|++|||+......   .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+||
T Consensus       162 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR  241 (333)
T PRK13243        162 GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR  241 (333)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence            999999999999999999997653211   11245899999999999999999999999999999999999999999999


Q ss_pred             CccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388          233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       233 g~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  312 (313)
                      |++||+++|+++|++|+|.||+||||+.||++.+|||++|||++|||+||+|.++..++.+.+++||.+|++|+++.+.|
T Consensus       242 g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v  321 (333)
T PRK13243        242 GKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTLV  321 (333)
T ss_pred             chhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999999999999998679999999999999999999999999999999999999999998887


Q ss_pred             C
Q 021388          313 V  313 (313)
Q Consensus       313 ~  313 (313)
                      |
T Consensus       322 ~  322 (333)
T PRK13243        322 N  322 (333)
T ss_pred             C
Confidence            6

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=4.3e-70  Score=508.68  Aligned_cols=299  Identities=29%  Similarity=0.462  Sum_probs=262.6

Q ss_pred             EEEEeCC--CChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388            5 GVLMACP--MNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         5 ~vl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      ||++.++  +.+...+.|++.+++..+ ... +++++.+.++++|+++++ ..++++++++++|+||||++.|+|+|++|
T Consensus         2 ki~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   78 (311)
T PRK08410          2 KIVILDAKTLGDKDLSVFEEFGDFQIY-PTT-SPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVD   78 (311)
T ss_pred             eEEEEecCCCChhhHHHHhhCceEEEe-CCC-CHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEccccccccc
Confidence            4666665  555666777776654443 222 334456678899999885 56799999999999999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-----ccccccCCCEEEEEcCChHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-----KLTTKFTGKTVGIIGLGRIGM  157 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~igiiG~G~iG~  157 (313)
                      +++++++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.....     ..+.+|+|||+||||+|+||+
T Consensus        79 ~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~  158 (311)
T PRK08410         79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGK  158 (311)
T ss_pred             HHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHH
Confidence            999999999999999999999999999999999999999999999999974221     124689999999999999999


Q ss_pred             HHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          158 AVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      .+|+++++|||+|++|||+...........++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||
T Consensus       159 ~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD  238 (311)
T PRK08410        159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN  238 (311)
T ss_pred             HHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence            99999999999999999975432221234589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCC---CceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          238 ERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGL---ENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~---pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      ++||++||++|+|+ |+||||++||++++ |||++   |||++|||+||+|.++..++...+++||.+|++|+.
T Consensus       239 e~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        239 EKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999 99999999998765 89986   899999999999999999999999999999999864

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-69  Score=521.79  Aligned_cols=311  Identities=28%  Similarity=0.422  Sum_probs=278.9

Q ss_pred             CCceEEEEeCCCChhHHHHHHhc-C-cEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCC
Q 021388            1 MESIGVLMACPMNTYLEQELERR-F-NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGL   78 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   78 (313)
                      |++++|++++++.+...+.|.+. + ++..+ ....+++++.+.++++|++++++..++++++++++|+||||++.|+|+
T Consensus         8 ~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~-~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   86 (409)
T PRK11790          8 KDKIKFLLLEGVHQSAVEVLRAAGYTNIEYH-KGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGT   86 (409)
T ss_pred             CCCeEEEEECCCCHHHHHHHHhcCCceEEEC-CCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceec
Confidence            45678999988888888888775 4 33333 222344555677889999887666789999999999999999999999


Q ss_pred             CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHH
Q 021388           79 DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMA  158 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~  158 (313)
                      ||+|+++|+++||.|+|+||+++.+||||++++||++.|++.++++.+++|.|.+.. ..+.+|.|||+||||+|+||+.
T Consensus        87 d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~L~gktvGIiG~G~IG~~  165 (409)
T PRK11790         87 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-AGSFEVRGKTLGIVGYGHIGTQ  165 (409)
T ss_pred             ccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-cCcccCCCCEEEEECCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999998533 2467899999999999999999


Q ss_pred             HHHHHHhCCCCEEEecCCCCCcc-ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          159 VAKRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       159 iA~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      +|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||
T Consensus       166 vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd  245 (409)
T PRK11790        166 LSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD  245 (409)
T ss_pred             HHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence            99999999999999998754332 23345689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEecCCCCCCCCC-----CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388          238 ERELVSALVEGRLGGAGLDVFENEPHVP-----EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~-----~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  312 (313)
                      ++||+++|++|++.||++|||++||++.     +|||++|||++|||+||+|.++++++...+++|+.+|++|+++.+.|
T Consensus       246 e~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~v  325 (409)
T PRK11790        246 IDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAV  325 (409)
T ss_pred             HHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcce
Confidence            9999999999999999999999999875     48999999999999999999999999999999999999999998887


Q ss_pred             C
Q 021388          313 V  313 (313)
Q Consensus       313 ~  313 (313)
                      |
T Consensus       326 n  326 (409)
T PRK11790        326 N  326 (409)
T ss_pred             e
Confidence            6

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-69  Score=504.30  Aligned_cols=303  Identities=29%  Similarity=0.481  Sum_probs=263.3

Q ss_pred             EEEeCC--C--ChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            6 VLMACP--M--NTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         6 vl~~~~--~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      |++.+.  +  .+...+.+++.++.+.+... ..++++.+.+.++|+++++ ..++++++++++|+||||++.|+|+|++
T Consensus         3 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   80 (317)
T PRK06487          3 AVFLDHDSLDLGDLDLSPLEQAFDELQLHDA-TTPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNV   80 (317)
T ss_pred             EEEEccccCCccccchhHHHhhCCeEEEecC-CCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence            666554  2  23445667666543333332 2344556778899998875 4679999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-----ccccccCCCEEEEEcCChHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-----KLTTKFTGKTVGIIGLGRIG  156 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~igiiG~G~iG  156 (313)
                      |++++.++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.+...     ..+.+|.||++||||+|+||
T Consensus        81 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG  160 (317)
T PRK06487         81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG  160 (317)
T ss_pred             CHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHH
Confidence            9999999999999999999999999999999999999999999999999974321     12468999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          157 MAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       157 ~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      +.+|+++++|||+|++||++.... . ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus       161 ~~vA~~l~~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vV  238 (317)
T PRK06487        161 GAVARLAEAFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV  238 (317)
T ss_pred             HHHHHHHhhCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcccc
Confidence            999999999999999999864322 1 22458999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccC--CCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          237 DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFG--LENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~--~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      |++||++||++|++.||+||||++||++.+ |||+  +|||++|||+||+|.++++++...+++||.+|++|+++ +.||
T Consensus       239 de~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v~  317 (317)
T PRK06487        239 DEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVVS  317 (317)
T ss_pred             CHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCCC
Confidence            999999999999999999999999998874 8995  89999999999999999999999999999999999865 5554

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=3e-68  Score=507.14  Aligned_cols=311  Identities=30%  Similarity=0.421  Sum_probs=272.9

Q ss_pred             ceEEEEeCCCChh-HHHHHHhc-CcEEEee--cCCChHHHHHhcc-CCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcC
Q 021388            3 SIGVLMACPMNTY-LEQELERR-FNLFKFW--TVSDKTQFLKAQQ-NNIRAVVGNATAGADAELIDALPK--LEIVSSFS   75 (313)
Q Consensus         3 ~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~   75 (313)
                      |++|+++.++.+. ..+.|.+. +++..+.  +...+++++.+.+ +++|+++++..+++++++++++|+  ||+|++.+
T Consensus        15 ~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~   94 (386)
T PLN02306         15 KYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMA   94 (386)
T ss_pred             CceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECC
Confidence            6789999988764 56777765 4554322  1123445555665 579999987767899999999996  69999999


Q ss_pred             cCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC--CcccccccCCCEEEEEcCC
Q 021388           76 VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLG  153 (313)
Q Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~igiiG~G  153 (313)
                      +|+||+|++++.++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|...  ....+.++.|+++||||+|
T Consensus        95 ~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  174 (386)
T PLN02306         95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAG  174 (386)
T ss_pred             cccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999988521  1124678999999999999


Q ss_pred             hHHHHHHHHHH-hCCCCEEEecCCCCCcc-------c------------cccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          154 RIGMAVAKRAE-AFSCPINYYSRTEKPNL-------K------------YKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       154 ~iG~~iA~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      .||+.+|++++ +|||+|++||++.....       +            .....++++++++||+|++|+|+|++|+++|
T Consensus       175 ~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li  254 (386)
T PLN02306        175 RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI  254 (386)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence            99999999985 99999999998764210       0            1123589999999999999999999999999


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHH
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD  293 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~  293 (313)
                      +++.|++||+|++|||+|||++||++||++||++|++.||+||||++||+++++||++|||++|||+||.|.++++++.+
T Consensus       255 n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~~~~~  334 (386)
T PLN02306        255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGMAT  334 (386)
T ss_pred             CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998777899999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCC
Q 021388          294 LVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       294 ~~~~nl~~~~~g~~~~~~v~  313 (313)
                      .+++||.+|++|+++.+.||
T Consensus       335 ~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        335 LAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             HHHHHHHHHHcCCCCccccc
Confidence            99999999999999998886

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-68  Score=495.91  Aligned_cols=270  Identities=28%  Similarity=0.479  Sum_probs=245.7

Q ss_pred             HHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHH
Q 021388           36 TQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAV  115 (313)
Q Consensus        36 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~  115 (313)
                      ++++.+.++++|+++++ ..++++++++++|+||||++.++|+|++|++++.++||.|+|+||+++.+||||++++||++
T Consensus        35 ~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~  113 (314)
T PRK06932         35 AEQTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL  113 (314)
T ss_pred             hHHHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence            34456778899998874 56799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchhHHHHHHhcCCCCCCC-c----ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHH
Q 021388          116 LRRLCESDRYVRSGKWKKGD-Y----KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV  190 (313)
Q Consensus       116 ~r~~~~~~~~~~~~~w~~~~-~----~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~  190 (313)
                      +|++..+++.+++|.|.... +    ..+.+|.||++||||+|.||+.+|+++++|||+|++||++...... ....+++
T Consensus       114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~  192 (314)
T PRK06932        114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFE  192 (314)
T ss_pred             HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHH
Confidence            99999999999999997421 0    1246899999999999999999999999999999999986432211 1245899


Q ss_pred             HHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-ccc
Q 021388          191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELF  269 (313)
Q Consensus       191 e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~  269 (313)
                      +++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++.+ |||
T Consensus       193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~  272 (314)
T PRK06932        193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI  272 (314)
T ss_pred             HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998764 888


Q ss_pred             ----CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          270 ----GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       270 ----~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                          ++|||++|||+||+|.++.+++.+.+++||.+|++|+.
T Consensus       273 ~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        273 QAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence                59999999999999999999999999999999998863

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.7e-67  Score=496.21  Aligned_cols=305  Identities=27%  Similarity=0.405  Sum_probs=266.6

Q ss_pred             CCceEEEEeCCCChhH---HHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcC
Q 021388            1 MESIGVLMACPMNTYL---EQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVG   77 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G   77 (313)
                      |.|++||++.+..+..   .+++.++++...+. .. +.+++.+.++++|+++++ ..++++++++.+|+||||++.++|
T Consensus        16 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G   92 (347)
T PLN02928         16 MRPTRVLFCGPEFPASYSYTREYLQKYPFIQVD-AV-AREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVG   92 (347)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHhhcCCeeEec-CC-CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcc
Confidence            6789999998766642   22333444443332 22 233456678899998874 457999999999999999999999


Q ss_pred             CCcCChhhhhhcCcEEEcCCCC---ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCCh
Q 021388           78 LDKVDMVKCKEKGVRVTNTPDV---LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR  154 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~  154 (313)
                      +|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.++++.|..   +.+.++.||++||||+|.
T Consensus        93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvGIiG~G~  169 (347)
T PLN02928         93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE---PIGDTLFGKTVFILGYGA  169 (347)
T ss_pred             cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc---ccccCCCCCEEEEECCCH
Confidence            9999999999999999999985   7899999999999999999999999999999964   246789999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ||+.+|++|++|||+|++|||+......                .....++++++++||+|++|+|+|++|+++|+++.|
T Consensus       170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l  249 (347)
T PLN02928        170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL  249 (347)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence            9999999999999999999987432110                013468999999999999999999999999999999


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLG  297 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~  297 (313)
                      +.||+|++|||+|||++||++||++||++|++.||+||||++||++++ |||++|||++|||+||+|.++++++.+.+++
T Consensus       250 ~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~  329 (347)
T PLN02928        250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGD  329 (347)
T ss_pred             hcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764 8999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCC
Q 021388          298 NLEAHFLNKPLLTP  311 (313)
Q Consensus       298 nl~~~~~g~~~~~~  311 (313)
                      ||.+|++|+++.+.
T Consensus       330 nl~~~~~g~~~~~~  343 (347)
T PLN02928        330 AALQLHAGRPLTGI  343 (347)
T ss_pred             HHHHHHCCCCCCce
Confidence            99999999988653

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-67  Score=500.21  Aligned_cols=295  Identities=27%  Similarity=0.438  Sum_probs=263.2

Q ss_pred             HHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeC--CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEE
Q 021388           17 EQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNA--TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRV   93 (313)
Q Consensus        17 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   93 (313)
                      ++.|++. ++++...+.+..++++.+.++++|+++++.  ..++++++++++|+||||++.|+|+||+|++++.++||.|
T Consensus        61 ~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V  140 (385)
T PRK07574         61 RKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITV  140 (385)
T ss_pred             HHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEE
Confidence            3456665 444443333334556677889999999853  3579999999999999999999999999999999999999


Q ss_pred             EcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEE
Q 021388           94 TNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY  172 (313)
Q Consensus        94 ~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~  172 (313)
                      +|++++++.+||||++++||+++|++..+++.+++|.|..... ..+.+|.|++|||||+|+||+.+|++|++|||+|++
T Consensus       141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~  220 (385)
T PRK07574        141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY  220 (385)
T ss_pred             EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            9999999999999999999999999999999999999984321 246789999999999999999999999999999999


Q ss_pred             ecCCCCC-----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          173 YSRTEKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       173 ~~~~~~~-----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      |||+...     ..+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||++||++
T Consensus       221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  300 (385)
T PRK07574        221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES  300 (385)
T ss_pred             ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence            9998632     12333456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021388          248 GRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTP  311 (313)
Q Consensus       248 ~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  311 (313)
                      |+|+||++|||++||++.+ |||++|||++|||+||.|.++++++.+.+++||++|++|+++.++
T Consensus       301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~  365 (385)
T PRK07574        301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE  365 (385)
T ss_pred             CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999998765 999999999999999999999999999999999999999998765

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=4.3e-67  Score=497.90  Aligned_cols=295  Identities=24%  Similarity=0.364  Sum_probs=262.6

Q ss_pred             hHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeC--CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCc
Q 021388           15 YLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNA--TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGV   91 (313)
Q Consensus        15 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI   91 (313)
                      .+.+.|++. ++++...+.+..++++.+.+.++|++++..  ..+++++.++++|+||||++.|+|+||+|++++.++||
T Consensus        66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI  145 (386)
T PLN03139         66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGL  145 (386)
T ss_pred             cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCe
Confidence            355667776 344444333334556677889999999854  24699999999999999999999999999999999999


Q ss_pred             EEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC-cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCE
Q 021388           92 RVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI  170 (313)
Q Consensus        92 ~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V  170 (313)
                      .|+|++|+++.+||||++++||++.|++.++++.+++|.|.... ...+++|.|++|||||+|+||+.+|++|++|||+|
T Consensus       146 ~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V  225 (386)
T PLN03139        146 TVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNL  225 (386)
T ss_pred             EEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEE
Confidence            99999999999999999999999999999999999999997422 12467899999999999999999999999999999


Q ss_pred             EEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388          171 NYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL  245 (313)
Q Consensus       171 ~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al  245 (313)
                      ++||++....     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|++||
T Consensus       226 ~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL  305 (386)
T PLN03139        226 LYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC  305 (386)
T ss_pred             EEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence            9999875322     22334568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021388          246 VEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLL  309 (313)
Q Consensus       246 ~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  309 (313)
                      ++|+|.||++|||++||++.+ |||++|||++|||+||.|.+++.++.+.+++||.+|++|+++.
T Consensus       306 ~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~  370 (386)
T PLN03139        306 SSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP  370 (386)
T ss_pred             HcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999998765 8999999999999999999999999999999999999999754

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=9.9e-67  Score=516.80  Aligned_cols=306  Identities=32%  Similarity=0.482  Sum_probs=275.2

Q ss_pred             EEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            5 GVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      +||+++++.+...+.|.+. +++.. .... +++++.+.++++|++++++.+++++++++++|+||||++.|+|+||+|+
T Consensus         1 ~vli~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~   78 (525)
T TIGR01327         1 KVLIADPISPDGIDILEDVGVEVDV-QTGL-SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDI   78 (525)
T ss_pred             CEEEeCCCCHHHHHHHHhcCcEEEe-CCCC-CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcH
Confidence            4788888888887888765 34432 2222 3444567788999999877778999999999999999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      ++|.++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+..+ .+.+|.||++||||+|+||+.+|++|
T Consensus        79 ~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~g~~l~gktvgIiG~G~IG~~vA~~l  157 (525)
T TIGR01327        79 EAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAF-MGTELYGKTLGVIGLGRIGSIVAKRA  157 (525)
T ss_pred             HHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccccc-CccccCCCEEEEECCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985432 47789999999999999999999999


Q ss_pred             HhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          164 EAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       164 ~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      ++|||+|++||++....    .+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++
T Consensus       158 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~  237 (525)
T TIGR01327       158 KAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEA  237 (525)
T ss_pred             HhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHH
Confidence            99999999999864321    22333458999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      ||++||++|+++||+||||++||++.+|||++|||++|||+|+.|.++++++...+++|+.+|++|+++.+.||
T Consensus       238 aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  311 (525)
T TIGR01327       238 ALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN  311 (525)
T ss_pred             HHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence            99999999999999999999999777799999999999999999999999999999999999999999988876

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-66  Score=514.08  Aligned_cols=306  Identities=32%  Similarity=0.489  Sum_probs=275.1

Q ss_pred             eEEEEeCCCChhHHHHHHhc--CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            4 IGVLMACPMNTYLEQELERR--FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      ++|++++++.+...+.|++.  +++... .. .+.+++.+.+.++|++++++.+++++++++++|+||||++.|+|+||+
T Consensus         1 m~ili~~~~~~~~~~~l~~~~~~~v~~~-~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (526)
T PRK13581          1 MKVLVSDPISPAGLEILKDAPGVEVDVK-TG-LDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNV   78 (526)
T ss_pred             CeEEEeCCCCHHHHHHHhccCCeEEEeC-CC-CCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence            36889988888887888776  333322 22 233445677889999998777789999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK  161 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~  161 (313)
                      |+++|.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+..+ .+.+|.||++||||+|+||+.+|+
T Consensus        79 d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~-~g~~l~gktvgIiG~G~IG~~vA~  157 (526)
T PRK13581         79 DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKF-MGVELYGKTLGIIGLGRIGSEVAK  157 (526)
T ss_pred             cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCc-cccccCCCEEEEECCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999975332 467899999999999999999999


Q ss_pred             HHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          162 RAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       162 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      ++++|||+|++|||+....    .+.... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||
T Consensus       158 ~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd  236 (526)
T PRK13581        158 RAKAFGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID  236 (526)
T ss_pred             HHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence            9999999999999865321    223333 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          238 ERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      ++||++||++|+++||+||||++||++.+|||++|||++|||+|+.|.++++++.+.+++|+.+|++|+++.+.||
T Consensus       237 e~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  312 (526)
T PRK13581        237 EAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN  312 (526)
T ss_pred             HHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence            9999999999999999999999999887799999999999999999999999999999999999999999988876

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1e-64  Score=476.62  Aligned_cols=312  Identities=19%  Similarity=0.269  Sum_probs=274.4

Q ss_pred             CCceEEEEeCCCChhHHHHHHhcCcEEE-eecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcCcC
Q 021388            1 MESIGVLMACPMNTYLEQELERRFNLFK-FWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPK--LEIVSSFSVG   77 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G   77 (313)
                      |.|++++.+.+......+.+.+.+++.. .+....+++. .+.+.++|+++++..+++++++++++|+  ||||++.|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G   79 (332)
T PRK08605          1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG   79 (332)
T ss_pred             CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence            7899999998876677777777665432 2222234444 3667899999987778899999999997  9999999999


Q ss_pred             CCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHH
Q 021388           78 LDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGM  157 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~  157 (313)
                      +|++|+++++++||.|+|+||+++.+||||+++++|+++|++..+++.+++|.|.......+++|+|++|||||+|.||+
T Consensus        80 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~  159 (332)
T PRK08605         80 FDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGL  159 (332)
T ss_pred             cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999998752221246789999999999999999


Q ss_pred             HHHHHH-HhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          158 AVAKRA-EAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       158 ~iA~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      .+|++| ++||++|++||++.....  ......++++++++||+|++|+|.++.|+++++++.++.||+|++|||+|||.
T Consensus       160 ~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~  239 (332)
T PRK08605        160 AVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS  239 (332)
T ss_pred             HHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence            999999 789999999998765321  22334589999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeeEEEecCCCCCCC--CCC------------cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHH
Q 021388          235 HVDERELVSALVEGRLGGAGLDVFENEPH--VPE------------ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE  300 (313)
Q Consensus       235 ~vd~~al~~al~~~~l~ga~lDV~~~Ep~--~~~------------~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~  300 (313)
                      ++|+++|.++|++|+|.||+||||+.||.  +.+            +||++|||++|||+|++|.++.+++...+++|+.
T Consensus       240 ~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~  319 (332)
T PRK08605        240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATL  319 (332)
T ss_pred             ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999982  322            4999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 021388          301 AHFLNKPLLTPVV  313 (313)
Q Consensus       301 ~~~~g~~~~~~v~  313 (313)
                      +|++|++..++||
T Consensus       320 ~~~~g~~~~~~~~  332 (332)
T PRK08605        320 EVLQTGTTRLRVN  332 (332)
T ss_pred             HHHcCCCCCCCcC
Confidence            9999999999887

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=9.1e-65  Score=475.98  Aligned_cols=308  Identities=20%  Similarity=0.309  Sum_probs=265.7

Q ss_pred             eEEEEeCCCC---hhHHHHHHhcCcEE-EeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCC--CccEEEEcCcC
Q 021388            4 IGVLMACPMN---TYLEQELERRFNLF-KFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVSSFSVG   77 (313)
Q Consensus         4 ~~vl~~~~~~---~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G   77 (313)
                      +||++-..-.   +.+.+.+++. .+. ...+.+.+++. .+.++++|+++++..+++++++++++|  +||+|++.++|
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   79 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKN-NVEVTTSKELLSSAT-VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG   79 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhc-CeEEEEcCCCCCHHH-HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence            5666644322   2333444444 322 22233345554 567889999998776789999999998  89999999999


Q ss_pred             CCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHH
Q 021388           78 LDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGM  157 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~  157 (313)
                      +|++|++++.++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.......+.+|+|++|||||+|.||+
T Consensus        80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~  159 (330)
T PRK12480         80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA  159 (330)
T ss_pred             cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999987642111246789999999999999999


Q ss_pred             HHHHHHHhCCCCEEEecCCCCCccc-cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          158 AVAKRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      .+|++|++||++|++||+++..... .....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||.+|
T Consensus       160 ~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~v  239 (330)
T PRK12480        160 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI  239 (330)
T ss_pred             HHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcccc
Confidence            9999999999999999998754332 223458999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeeEEEecCCCCCCCC----------C----CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 021388          237 DERELVSALVEGRLGGAGLDVFENEPHV----------P----EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAH  302 (313)
Q Consensus       237 d~~al~~al~~~~l~ga~lDV~~~Ep~~----------~----~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~  302 (313)
                      |+++|++||++|++.||+||||++||+.          +    +|||++|||++|||+|++|.++++++.+.+++|+.+|
T Consensus       240 d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~  319 (330)
T PRK12480        240 NTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSV  319 (330)
T ss_pred             CHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999962          1    2699999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCC
Q 021388          303 FLNKPLLTPVV  313 (313)
Q Consensus       303 ~~g~~~~~~v~  313 (313)
                      ++|+...++||
T Consensus       320 ~~~~~~~~~~~  330 (330)
T PRK12480        320 INTGTCETRLN  330 (330)
T ss_pred             HhCCCCcccCC
Confidence            99999999987

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=7.2e-65  Score=459.24  Aligned_cols=304  Identities=29%  Similarity=0.432  Sum_probs=275.2

Q ss_pred             EEEEeCCCChhHHHHHHhcC-cEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHh-hCCCccEEEEcCcCCCcCC
Q 021388            5 GVLMACPMNTYLEQELERRF-NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELID-ALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id   82 (313)
                      +||+++++...-.+.|++.+ ++..+.+. ..+ ++...++++|++++++.+++++++++ ...+||+|++.++|+||+|
T Consensus         8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~-~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD   85 (406)
T KOG0068|consen    8 KILVAESLDQACIEILKDNGYQVEFKKNL-SLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD   85 (406)
T ss_pred             eEEEecccchHHHHHHHhcCceEEEeccC-CHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence            69999999999999999987 44443333 233 56677899999999999999999999 4568999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKR  162 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~  162 (313)
                      ++++.++||.|.|+|.+|..++||+++++++++.|++.+....+++|+|++..+ .|.++.|||+||+|+|.||+.+|++
T Consensus        86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~-~G~el~GKTLgvlG~GrIGseVA~r  164 (406)
T KOG0068|consen   86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKY-LGWELRGKTLGVLGLGRIGSEVAVR  164 (406)
T ss_pred             hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecce-eeeEEeccEEEEeecccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999997665 6899999999999999999999999


Q ss_pred             HHhCCCCEEEecCCCCCccc-c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          163 AEAFSCPINYYSRTEKPNLK-Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       163 l~~~G~~V~~~~~~~~~~~~-~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      ++++||+|++||+-...... .  ....+++|++..||+|.+|+|++|+|++++|.+.|+.||+|..+||++||++||++
T Consensus       165 ~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~  244 (406)
T KOG0068|consen  165 AKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP  244 (406)
T ss_pred             HHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence            99999999999986543221 1  13568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCC---CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVP---EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~---~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  312 (313)
                      ||++|+++|++.||++|||+.||...   ..|.+||||++|||+|++|.|++.++....++++..|.+| .....|
T Consensus       245 ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~V  319 (406)
T KOG0068|consen  245 ALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSV  319 (406)
T ss_pred             HHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Ccccee
Confidence            99999999999999999999999774   4799999999999999999999999999999999999998 444333

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=6.2e-61  Score=446.59  Aligned_cols=292  Identities=23%  Similarity=0.348  Sum_probs=247.7

Q ss_pred             EEEEeCCC-Chh-HHHHHHhcCcEEEe--ecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            5 GVLMACPM-NTY-LEQELERRFNLFKF--WTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         5 ~vl~~~~~-~~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      .+++..+. ... +.+.|++.++...+  +..+   +     ..++|+++++..   +.+.++ .|+||||++.|+|+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~---~-----~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~   69 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKSG---D-----NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDS   69 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCCC---C-----CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccch
Confidence            44544443 444 66777776553322  2221   1     368999998652   457776 5899999999999999


Q ss_pred             CChhh-----hhhcCcEEEcCCC-CChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCCh
Q 021388           81 VDMVK-----CKEKGVRVTNTPD-VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR  154 (313)
Q Consensus        81 id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~  154 (313)
                      +|...     +.++||.|+|+++ .++.+||||+++++|++.|++..+...++++.|...   ...++.|+||||||+|.
T Consensus        70 i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---~~~~l~g~tvgIvG~G~  146 (312)
T PRK15469         70 ILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---PEYHREDFTIGILGAGV  146 (312)
T ss_pred             hhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC---CCCCcCCCEEEEECCCH
Confidence            98322     4458999999864 689999999999999999999999999999999742   24579999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCccccc---cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~---~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ||+.+|++|++|||+|.+||++.+...+..   ...++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|
T Consensus       147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence            999999999999999999998765433222   24579999999999999999999999999999999999999999999


Q ss_pred             CCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021388          232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLT  310 (313)
Q Consensus       232 rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  310 (313)
                      ||++||+++|++||++|+++||++|||++||++.+ |||++|||++|||+||.|.+.  ++...+.+|+++|++|+++.+
T Consensus       227 RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~  304 (312)
T PRK15469        227 RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCG  304 (312)
T ss_pred             CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcc
Confidence            99999999999999999999999999999998865 899999999999999999874  688999999999999999999


Q ss_pred             CCC
Q 021388          311 PVV  313 (313)
Q Consensus       311 ~v~  313 (313)
                      .|+
T Consensus       305 ~V~  307 (312)
T PRK15469        305 QVD  307 (312)
T ss_pred             cCC
Confidence            885

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-60  Score=439.53  Aligned_cols=285  Identities=27%  Similarity=0.394  Sum_probs=244.3

Q ss_pred             EEEEeCCCChhHHHHHHhcCcEE-EeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            5 GVLMACPMNTYLEQELERRFNLF-KFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      ++++..++.+.+.+.+.+.++.. ..+. +        ...++|++++...       +...++||||++.++|+|++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~   65 (303)
T PRK06436          2 NVYVNFPMSKKLLEICRDILDLDDVHWY-P--------DYYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDV   65 (303)
T ss_pred             eEEEEccCCHHHHHHHHhhcccceeEec-c--------ccCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccH
Confidence            35566788888887766544321 1111 1        1357888865332       2345799999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      +++.++||.++|. |+++.+||||+++++|+++|+++++++.+++|.|.+.   .+.+|+||++||||+|+||+.+|+++
T Consensus        66 ~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---~~~~L~gktvgIiG~G~IG~~vA~~l  141 (303)
T PRK06436         66 SGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---PTKLLYNKSLGILGYGGIGRRVALLA  141 (303)
T ss_pred             HHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC---CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence            9999888888775 7889999999999999999999999999999999853   35689999999999999999999999


Q ss_pred             HhCCCCEEEecCCCCCccccc-cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388          164 EAFSCPINYYSRTEKPNLKYK-YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       164 ~~~G~~V~~~~~~~~~~~~~~-~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~  242 (313)
                      ++|||+|++|||+.... +.. ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.
T Consensus       142 ~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~  220 (303)
T PRK06436        142 KAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDML  220 (303)
T ss_pred             HHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence            99999999999975432 222 2568999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          243 SALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVG-SGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       243 ~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a-~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      ++|++|++.||++|||++||++++.  .+|||++|||++ +.|.++.+++...+++||.+|++|++ .+.|+
T Consensus       221 ~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~  289 (303)
T PRK06436        221 NFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVR  289 (303)
T ss_pred             HHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence            9999999999999999999987654  689999999986 58899999999999999999999987 57664

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=3.1e-60  Score=449.39  Aligned_cols=277  Identities=23%  Similarity=0.326  Sum_probs=241.3

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |||++.+.+ +...+.+.+.+++......+.+.    +.+.++|++++++.+++++++++ .|+||||+++++|+||+|+
T Consensus         1 mkIl~d~~~-~~~~~~~~~~~ev~~~~~~~~~~----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~   74 (378)
T PRK15438          1 MKILVDENM-PYARELFSRLGEVKAVPGRPIPV----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE   74 (378)
T ss_pred             CEEEEeCCc-chHHHHHhhcCcEEEeCCCCCCH----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence            478887655 55556666555655543222222    33678999999887889999996 6999999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      +++.++||.|+|+||+++.+||||+++++|++.|+.                   +.++.|+||||||+|+||+.+|++|
T Consensus        75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------------------g~~L~gktvGIIG~G~IG~~vA~~l  135 (378)
T PRK15438         75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------------------GFSLHDRTVGIVGVGNVGRRLQARL  135 (378)
T ss_pred             HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-------------------CCCcCCCEEEEECcCHHHHHHHHHH
Confidence            999999999999999999999999999999999852                   3469999999999999999999999


Q ss_pred             HhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChh----hhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       164 ~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      ++|||+|++||+..........+.++++++++||+|++|+|+|++    |+++++++.|+.||+|++|||+|||++||++
T Consensus       136 ~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~  215 (378)
T PRK15438        136 EALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNT  215 (378)
T ss_pred             HHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHH
Confidence            999999999998643222112356899999999999999999996    9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      ||+++|++|++.||+||||++||.++.+||..++ ++|||+||+|.+...++..++.+|+.+|+ |.+
T Consensus       216 AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~  281 (378)
T PRK15438        216 ALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE  281 (378)
T ss_pred             HHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence            9999999999999999999999987778988776 99999999999999999999999999999 444

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.3e-59  Score=446.34  Aligned_cols=278  Identities=21%  Similarity=0.351  Sum_probs=242.9

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |||++.+.+ |...+.+.+..++......    ++..+.++++|++++++.+++++++++. ++||||++.++|+||+|+
T Consensus         1 mkI~~d~~~-p~~~~~~~~~~~v~~~~~~----~~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~   74 (381)
T PRK00257          1 MKIVADENI-PLLDAFFAGFGEIRRLPGR----AFDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDL   74 (381)
T ss_pred             CEEEEecCc-hhHHHHHhhCCcEEEcCCc----ccCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCH
Confidence            578886555 5555555554454433211    1123456899999998878899999985 899999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      +++.++||.|+|+||+++.+||||+++++|++.|+.                   +.++.|++|||||+|+||+.+|+++
T Consensus        75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-------------------g~~l~gktvGIIG~G~IG~~va~~l  135 (381)
T PRK00257         75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-------------------GVDLAERTYGVVGAGHVGGRLVRVL  135 (381)
T ss_pred             HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-------------------CCCcCcCEEEEECCCHHHHHHHHHH
Confidence            999999999999999999999999999999998751                   3579999999999999999999999


Q ss_pred             HhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCCh----hhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTE----ETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       164 ~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~----~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      ++|||+|++||+......+.....++++++++||+|++|+|+|+    .|+++|+++.|+.||+|++|||+|||++||++
T Consensus       136 ~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~  215 (381)
T PRK00257        136 RGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQ  215 (381)
T ss_pred             HHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHH
Confidence            99999999999865433332345689999999999999999999    59999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      ||+++|++|++.||+||||++||.++.+||+. |+++|||+||+|.++..++..++++|+.+|+++.+
T Consensus       216 AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~  282 (381)
T PRK00257        216 ALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPA  282 (381)
T ss_pred             HHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999877789885 99999999999999999999999999999998775

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.9e-59  Score=432.76  Aligned_cols=272  Identities=50%  Similarity=0.829  Sum_probs=246.2

Q ss_pred             ccCCceEEE-EeCCCCCCHHHHhhC-CCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhch
Q 021388           42 QQNNIRAVV-GNATAGADAELIDAL-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL  119 (313)
Q Consensus        42 ~~~~~~~i~-~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~  119 (313)
                      ...+...++ +......+.+.+.+. |++|+|+++|+|+||+|+++|++|||+|+|+|+.+..+|||++++++|.++|++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~  136 (336)
T KOG0069|consen   57 RIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRF  136 (336)
T ss_pred             hccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhh
Confidence            344444444 444556778888886 899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCC-CCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc----ccCCCHHHHhh
Q 021388          120 CESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY----KYYPSVVELAS  194 (313)
Q Consensus       120 ~~~~~~~~~~~w~-~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~----~~~~~l~e~~~  194 (313)
                      ..+++.+++|.|. ...++.+..+.||+|||+|+|+||+.+|++|++||+.+.|++|++......    ....+++++++
T Consensus       137 ~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~  216 (336)
T KOG0069|consen  137 SEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLA  216 (336)
T ss_pred             hhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHh
Confidence            9999999999994 333456788999999999999999999999999998888888877643321    12568999999


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV  274 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv  274 (313)
                      +||+|++|||+|++|++++|++.+.+||+|+++||++||.++|++++.+||++|++.+|++|||++||.++++|+.++|+
T Consensus       217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnv  296 (336)
T KOG0069|consen  217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNV  296 (336)
T ss_pred             hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999666799999999


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          275 VLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       275 ~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      ++|||+|+.|.+++.+|...++.|+.+|++|+++.++|+
T Consensus       297 v~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  297 VILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             eEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence            999999999999999999999999999999999988874

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=2.7e-47  Score=328.85  Aligned_cols=173  Identities=45%  Similarity=0.696  Sum_probs=151.8

Q ss_pred             HHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----cc
Q 021388          109 IGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----YK  184 (313)
Q Consensus       109 l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~~  184 (313)
                      +++||++.|++.++++.++++.|.......+.+++|++|||||+|+||+.+|+++++|||+|++|||+......    ..
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            68999999999999999999999211123577899999999999999999999999999999999999875431    12


Q ss_pred             cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC
Q 021388          185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV  264 (313)
Q Consensus       185 ~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~  264 (313)
                      ...+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||+.||++
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-cccCCCceEEccCCC
Q 021388          265 PE-ELFGLENVVLMPHVG  281 (313)
Q Consensus       265 ~~-~L~~~pnv~lTPH~a  281 (313)
                      .+ |||++|||++|||+|
T Consensus       161 ~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  161 ADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTHHHHTSTTEEEESS-T
T ss_pred             CCChHHcCCCEEEeCccC
Confidence            76 999999999999987

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=100.00  E-value=4.9e-33  Score=254.91  Aligned_cols=275  Identities=23%  Similarity=0.345  Sum_probs=243.5

Q ss_pred             EEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHH
Q 021388           27 FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVAD  106 (313)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE  106 (313)
                      +-+.+...+.|..++.+.++-.-+.+.+..++++.+++++.||++...+.|+|++|+.++.+-||.|||.|+...+.+|+
T Consensus        55 vafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~  134 (435)
T KOG0067|consen   55 VAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETAD  134 (435)
T ss_pred             eeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHH
Confidence            44556666777777777777666777778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchhHHHHHHhcCCCCCCCcc------cccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--
Q 021388          107 LAIGLMLAVLRRLCESDRYVRSGKWKKGDYK------LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--  178 (313)
Q Consensus       107 ~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~------~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--  178 (313)
                      -++..||.++|+.....+..++|.|.+....      -.....|.+.|++|+|..|++++.++++||+.|+.||+...  
T Consensus       135 stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g  214 (435)
T KOG0067|consen  135 STLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG  214 (435)
T ss_pred             HHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh
Confidence            9999999999999999999999988632211      12357999999999999999999999999999999998764  


Q ss_pred             --CccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          179 --PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       179 --~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                        +..+.++..++++++.++|.+++|+.+++++.++++.-.+++|++|++++|++||.++|+++|.++|++|++++++  
T Consensus       215 ~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa--  292 (435)
T KOG0067|consen  215 IDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA--  292 (435)
T ss_pred             hhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc--
Confidence              3345666678999999999999999999999999999999999999999999999999999999999999999887  


Q ss_pred             CCCCCCCC--CCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 021388          257 VFENEPHV--PEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL  308 (313)
Q Consensus       257 V~~~Ep~~--~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  308 (313)
                           |..  ..||.+.||.++|||.+++++.+..++.+.+...+++-..|+-+
T Consensus       293 -----~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip  341 (435)
T KOG0067|consen  293 -----PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIP  341 (435)
T ss_pred             -----CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCc
Confidence                 322  24899999999999999999999999999999999888877643

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.91  E-value=3.1e-23  Score=170.37  Aligned_cols=101  Identities=27%  Similarity=0.451  Sum_probs=85.6

Q ss_pred             EEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhh
Q 021388            6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVK   85 (313)
Q Consensus         6 vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~   85 (313)
                      ||+++++.+..++.|++.+++. +.+. .+++++.+.++++|+++++..+++++++++.+|+||||++.|+|+|++|+++
T Consensus         1 ili~~~~~~~~~~~l~~~~~v~-~~~~-~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~   78 (133)
T PF00389_consen    1 ILITDPLPDEEIERLEEGFEVE-FCDS-PSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEA   78 (133)
T ss_dssp             EEESSS-SHHHHHHHHHTSEEE-EESS-SSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHH
T ss_pred             eEEeccCCHHHHHHHHCCceEE-EeCC-CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHH
Confidence            7899999999999999966444 4443 3455667788999999998777799999999999999999999999999999


Q ss_pred             hhhcCcEEEcCCCCChHHHHHHH
Q 021388           86 CKEKGVRVTNTPDVLTDDVADLA  108 (313)
Q Consensus        86 ~~~~gI~v~n~~~~~~~~vAE~a  108 (313)
                      ++++||.|+|+||+++.+||||+
T Consensus        79 a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   79 AKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             HhhCeEEEEEeCCcCCcchhccc
Confidence            99999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.86  E-value=3.4e-21  Score=186.26  Aligned_cols=166  Identities=22%  Similarity=0.295  Sum_probs=135.9

Q ss_pred             EcCcCCCcC-ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEc
Q 021388           73 SFSVGLDKV-DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIG  151 (313)
Q Consensus        73 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG  151 (313)
                      -+++|+..+ .+.....-||+|+|+|+.+..+++|+++++++++...      .+|.+         +..+.|++++|+|
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~------~~R~~---------~~~LaGKtVgVIG  261 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDG------IFRAT---------DVMIAGKTVVVCG  261 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHH------HHHhc---------CCCcCCCEEEEEC
Confidence            347777765 2333344689999999999999999999999999833      33433         3469999999999


Q ss_pred             CChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcE
Q 021388          152 LGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV  226 (313)
Q Consensus       152 ~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~  226 (313)
                      +|.||+.+|+++++||++|+++++++...     .++. ..+++++++.+|+|++|+.    +.++|+.+.|+.||+|++
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~atG----t~~iI~~e~~~~MKpGAi  336 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTATG----NKDIITLEHMRRMKNNAI  336 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECCC----cccccCHHHHhccCCCcE
Confidence            99999999999999999999997765432     1222 3478999999999999853    788999999999999999


Q ss_pred             EEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC
Q 021388          227 LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP  265 (313)
Q Consensus       227 lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~  265 (313)
                      +||+||+   |.+.++++|+.+.    ++|+++.||...
T Consensus       337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             EEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            9999999   7888889998754    789999999654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.82  E-value=3.4e-20  Score=171.19  Aligned_cols=177  Identities=16%  Similarity=0.225  Sum_probs=140.5

Q ss_pred             hccCCceEEEEeC----------------CCCCCHHHHhhCCCccEEEEcCcCCCcCChh-hhhhcCcEEE------cCC
Q 021388           41 AQQNNIRAVVGNA----------------TAGADAELIDALPKLEIVSSFSVGLDKVDMV-KCKEKGVRVT------NTP   97 (313)
Q Consensus        41 ~~~~~~~~i~~~~----------------~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~   97 (313)
                      ..++++|+++..-                ..++++++++.+|   .++...+|+++.|++ +|.++||+|+      |++
T Consensus        50 ~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va  126 (287)
T TIGR02853        50 LDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVA  126 (287)
T ss_pred             hhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceE
Confidence            3467888888631                2235688899888   377788999999998 8999999999      999


Q ss_pred             CCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388           98 DVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus        98 ~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .+++.++||+++++++..                      .+.++.|++++|+|+|.||+.+|+.|+++|++|.+++|+.
T Consensus       127 ~~n~~~~Ae~ai~~al~~----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       127 IYNSIPTAEGAIMMAIEH----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             EEccHhHHHHHHHHHHHh----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            999999999999877743                      1236889999999999999999999999999999999987


Q ss_pred             CCcc-----ccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc-cccHHHHHHHHHhCC
Q 021388          178 KPNL-----KYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP-HVDERELVSALVEGR  249 (313)
Q Consensus       178 ~~~~-----~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~-~vd~~al~~al~~~~  249 (313)
                      +...     +..  ...++.++++++|+|++|+|.+     +++++.++.||+++++||++..+ -+|.    ++.++..
T Consensus       185 ~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G  255 (287)
T TIGR02853       185 ADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRG  255 (287)
T ss_pred             HHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCC
Confidence            5321     221  1235778899999999999864     67888999999999999999854 2343    4455555


Q ss_pred             ee
Q 021388          250 LG  251 (313)
Q Consensus       250 l~  251 (313)
                      +.
T Consensus       256 ~~  257 (287)
T TIGR02853       256 IK  257 (287)
T ss_pred             CE
Confidence            55

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.66  E-value=4e-15  Score=138.13  Aligned_cols=165  Identities=15%  Similarity=0.251  Sum_probs=129.1

Q ss_pred             HhccCCceEEEEeCC----------------CCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCC----
Q 021388           40 KAQQNNIRAVVGNAT----------------AGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDV----   99 (313)
Q Consensus        40 ~~~~~~~~~i~~~~~----------------~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~----   99 (313)
                      .+.++++|+++..-.                ..++++.++.+|+...+. .|.+.++++ +.+.++||++.+....    
T Consensus        50 ~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~  127 (296)
T PRK08306         50 EEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA  127 (296)
T ss_pred             HHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence            345678999996411                123688999999997555 488889987 7888999999987754    


Q ss_pred             --ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          100 --LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       100 --~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                        ++.++||.++.+.+..                      .+..+.|++++|+|+|.+|+.+++.|+++|++|.++||++
T Consensus       128 ~~ns~~~aegav~~a~~~----------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        128 ILNSIPTAEGAIMMAIEH----------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             hhccHhHHHHHHHHHHHh----------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence              8899999977754321                      1235788999999999999999999999999999999986


Q ss_pred             CCc-----cccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          178 KPN-----LKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       178 ~~~-----~~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ...     .+..  ...++.+.++++|+|+.++|.     .+++++.++.|++++++||++..
T Consensus       186 ~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        186 AHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             HHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            532     1222  123567889999999999883     35788999999999999999863

>PLN02494 adenosylhomocysteinase

Probab=99.59  E-value=2.4e-15  Score=145.52  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=100.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+.|++++|+|+|.||+.+|+++++||++|+++++++...     .++. ..+++++++.+|+|+.+    ..++++++.
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            3789999999999999999999999999999998876432     1232 24688999999999873    347789999


Q ss_pred             HHHhccCCCcEEEEcCC-CccccHHHHHHH--HHhCCeeEEEecCCCCCC
Q 021388          216 EVIDALGPKGVLINIGR-GPHVDERELVSA--LVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~r-g~~vd~~al~~a--l~~~~l~ga~lDV~~~Ep  262 (313)
                      +.|+.||+|++++|+|| +..||.++|.++  ++.+.++ +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  9999998 8999998764

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.59  E-value=5.4e-15  Score=135.32  Aligned_cols=116  Identities=23%  Similarity=0.333  Sum_probs=103.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIIN--RE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~  216 (313)
                      ++||+||+|.||.+||++|.+.|++|.+|||++++      ..+.....+..|+++++|+|++|+|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            47999999999999999999999999999999876      22556677889999999999999999999999884  67


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec--CCCCCC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD--VFENEP  262 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD--V~~~Ep  262 (313)
                      .++.+|+|+++||+++.+....+.+.++++++.+.  .+|  |....+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~  126 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDAPVSGGVP  126 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEecCccCCch
Confidence            99999999999999999999999999999999998  666  444444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.57  E-value=4.2e-15  Score=126.26  Aligned_cols=111  Identities=20%  Similarity=0.373  Sum_probs=91.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc-CHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII-NREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li-~~~~l  218 (313)
                      ++|||||+|.||+.||++|.+.|++|.+|||++++.     .+.....++.|+++++|+|++++|..++++.++ ..+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999987542     345567899999999999999999988888776 22278


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      +.+++|.++||+++.+.-+...+.+.+++..+.  ++|+
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            899999999999999999999999999998877  7775

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.51  E-value=3.3e-14  Score=131.57  Aligned_cols=89  Identities=25%  Similarity=0.288  Sum_probs=75.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ..|+||+|||||+|+||+++|++|+++|++|++|++.....     .++. ..++++++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            35999999999999999999999999999999997654321     1333 34899999999999999997 66789999


Q ss_pred             HHHHhccCCCcEEEEc
Q 021388          215 REVIDALGPKGVLINI  230 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~  230 (313)
                      ++.++.||+|++|+-.
T Consensus        90 ~eil~~MK~GaiL~f~  105 (335)
T PRK13403         90 AEVEENLREGQMLLFS  105 (335)
T ss_pred             HHHHhcCCCCCEEEEC
Confidence            9999999999988653

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.51  E-value=4.6e-14  Score=135.40  Aligned_cols=115  Identities=22%  Similarity=0.256  Sum_probs=98.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++++.+.     .++. ..+++++++.+|+|+.+..    +.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence            4799999999999999999999999999999998776432     1232 3467889999999987654    6778889


Q ss_pred             HHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          216 EVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                      +.+..||+|++++|+||+.+ +|.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999999887777789999864

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.39  E-value=1.4e-12  Score=120.68  Aligned_cols=109  Identities=14%  Similarity=0.260  Sum_probs=92.0

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc-C-HHHH
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII-N-REVI  218 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li-~-~~~l  218 (313)
                      +|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....+..+++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            48999999999999999999999999999987532     233345678899999999999999888877765 3 3467


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                      ..+++|+++||+++..+.+.+++.+.++++.+.  .+|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~  116 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD  116 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence            889999999999999999999999999988766  444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.38  E-value=1.8e-12  Score=120.46  Aligned_cols=111  Identities=14%  Similarity=0.251  Sum_probs=95.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~  217 (313)
                      ++|||||+|.||.++|+.|...|++|.+||++++..     .+.....+..++++++|+|++|+|.....+.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            479999999999999999999999999999987642     2334566888999999999999998877777763  356


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ++.+++|.++||++++.+...+.+.+.+.++.+.  .+|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7789999999999999999999999999999887  5664

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.38  E-value=2.6e-12  Score=119.60  Aligned_cols=110  Identities=24%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhc---CCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASN---CHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~li~~~  216 (313)
                      ++|||||+|.||..+|++|...|++|.+|||+++..     .+.....+.++++++   +|+|++|+|..+.++.++ .+
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence            379999999999999999999999999999986532     234456688888876   699999999887888887 56


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      .++.+++|.++||+++....+..++.+.+.+..+.  .+|.
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda  118 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC  118 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence            78889999999999999999999999999988876  5773

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.38  E-value=2.3e-12  Score=119.59  Aligned_cols=118  Identities=20%  Similarity=0.336  Sum_probs=96.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~  217 (313)
                      ++|||||+|.||+.+|+.+...|++|.+||+++....     +.....+++++++++|+|++|+|.+.+++.++.  .+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            5799999999999999999999999999999875321     233456788999999999999998888787763  347


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep  262 (313)
                      ++.+++|.++||+++..+...+++.+.+.+.++...-..|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            788999999999999999999999999998877633334554444

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.36  E-value=2.5e-12  Score=126.59  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=99.9

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccc---cCCCHHHHhhc---CCEEEEecCCChhhh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYK---YYPSVVELASN---CHILVVACPLTEETR  210 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~e~~~~---aDvV~~~lp~~~~t~  210 (313)
                      +|||||+|.||+.||++|...|++|.+|||++++..         +..   ...+++++++.   +|+|++++|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            699999999999999999999999999999876321         222   45688888876   999999999999999


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep  262 (313)
                      .++ ...++.+++|.++||+|+...-+...+.+.+++..+.....-|...++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            988 678899999999999999999999999999999999855555665555

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.34  E-value=2.7e-12  Score=123.91  Aligned_cols=152  Identities=22%  Similarity=0.277  Sum_probs=111.6

Q ss_pred             EEcCcCCCcC-ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEE
Q 021388           72 SSFSVGLDKV-DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGII  150 (313)
Q Consensus        72 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igii  150 (313)
                      =-+++|+..+ .+....+.+++|.|++..+.++.-|...+.-.+....+.      +.         ....+.|++++|+
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra---------t~~~l~Gk~VlVi  218 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA---------TNVLIAGKVVVVA  218 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh---------ccCCCCCCEEEEE
Confidence            3457887766 344444578999999998887755533222222211110      00         1234799999999


Q ss_pred             cCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388          151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG  225 (313)
Q Consensus       151 G~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  225 (313)
                      |+|.||+.+|++++++|++|+++|+++....     ++. ..+++++++.+|+|+.+..    +.++++.+.+..||+|+
T Consensus       219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~Ga  293 (425)
T PRK05476        219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGA  293 (425)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999998775422     222 3468899999999988753    56688889999999999


Q ss_pred             EEEEcCCCcc-ccHHHHHH
Q 021388          226 VLINIGRGPH-VDERELVS  243 (313)
Q Consensus       226 ~lIn~~rg~~-vd~~al~~  243 (313)
                      +++|+|+... +|.++|.+
T Consensus       294 iliNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        294 ILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             EEEEcCCCCCccChHHHhh
Confidence            9999999876 77777754

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.32  E-value=8.1e-12  Score=116.33  Aligned_cols=110  Identities=25%  Similarity=0.290  Sum_probs=94.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhc---CCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASN---CHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~li~~~  216 (313)
                      ++|||||+|.||+.+|++|...|++|.+||++++..     .+.....+.+++++.   +|+|++++|..+.+..++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            379999999999999999999999999999987532     234455678888875   699999999877777777 56


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      .+..+++|.++||++++......++.+.+++.++.  .+|+
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            77889999999999999999999999999999887  5674

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.30  E-value=6.1e-12  Score=114.11  Aligned_cols=114  Identities=17%  Similarity=0.279  Sum_probs=100.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--C
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--N  214 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~  214 (313)
                      .+.++||+||+|+||..|+..|.+.|++|++|||+.++.     .|+....+..|+.++||+|+.++|...+.+.++  .
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            457899999999999999999999999999999988753     356677899999999999999999999999887  4


Q ss_pred             HHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          215 REVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       215 ~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ...|+.+++|... ||.++.+..-...+.++++....+  .+|.
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA  154 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA  154 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence            5578888898887 999999999999999999999887  6664

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.30  E-value=4.9e-12  Score=106.29  Aligned_cols=100  Identities=19%  Similarity=0.295  Sum_probs=72.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|.+++..+-..     .+++ ..+++++++++|+++.+..    .+.++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence            35899999999999999999999999999999999877532     2333 3479999999999988875    467889


Q ss_pred             HHHHhccCCCcEEEEcCCCcc-ccHHHHHHH
Q 021388          215 REVIDALGPKGVLINIGRGPH-VDERELVSA  244 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~-vd~~al~~a  244 (313)
                      .+.|.+||+|+++.|++.... +|-+.|.+.
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeecccccc
Confidence            999999999999999998655 666555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.28  E-value=1.7e-11  Score=113.80  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=93.3

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHHHh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REVID  219 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~l~  219 (313)
                      +|||||+|+||..+|++|...|++|.+||+++...    .+.....+..++++++|+|++|+|..++.+.++.  ...++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~   81 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK   81 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence            79999999999999999999999999999876421    2334456888999999999999998888887763  24677


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      .+++|.++||+++...-+.+.+.+.+.+....  .+|.
T Consensus        82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            78999999999999999999999999998876  6664

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.22  E-value=5e-11  Score=117.12  Aligned_cols=117  Identities=20%  Similarity=0.253  Sum_probs=97.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------c--cccCCCHHHHhh---cCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------K--YKYYPSVVELAS---NCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~--~~~~~~l~e~~~---~aDvV~~~lp~~~~t~  210 (313)
                      .+|||||+|.||.++|++|...|++|.+|||+++...         +  .....+++++++   ++|+|++++|....++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            4799999999999999999999999999999876411         2  224568888886   5899999999888888


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep  262 (313)
                      .++ +++++.+++|.++||++.+...|...+.+.+.+..+.....-|...++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            888 668889999999999999999999999999999999833333454443

>PLN02858 fructose-bisphosphate aldolase

Probab=99.21  E-value=4.9e-11  Score=130.06  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--CH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--NR  215 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~  215 (313)
                      ..++||+||+|.||..||++|...|++|.+|||++...     .+...+.+..|+.++||+|++|+|..++++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            35789999999999999999999999999999987642     245567899999999999999999999988887  45


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC--eeEEEecC
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGR--LGGAGLDV  257 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~--l~ga~lDV  257 (313)
                      ..++.+++|.++||+|+..+-..+.+.+.+.+..  +.  .+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6888899999999999999999999999999887  65  6675

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.18  E-value=1.5e-10  Score=107.77  Aligned_cols=109  Identities=21%  Similarity=0.258  Sum_probs=89.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHH---hhcCCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVEL---ASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      ++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++   +.++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            4799999999999999999999999999999876321     22233456554   45689999999977 777777 56


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ..+.+++|.++||++.+...+...+.+.+++..+.  .+|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            78889999999999999999999999999988877  5664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.14  E-value=1.5e-10  Score=126.19  Aligned_cols=112  Identities=17%  Similarity=0.161  Sum_probs=96.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--CHH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--NRE  216 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~~  216 (313)
                      .++|||||+|.||.+||++|...|++|.+||+++...     .+.....+..+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            4789999999999999999999999999999987542     233346788999999999999999988888887  456


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHh--CCeeEEEecC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVE--GRLGGAGLDV  257 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~--~~l~ga~lDV  257 (313)
                      .++.+++|.++||+++.++-..+.+.+.+.+  ..+.  .+|.
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA  444 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA  444 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence            7888999999999999999999999999998  6665  5664

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.14  E-value=1.4e-10  Score=107.29  Aligned_cols=107  Identities=15%  Similarity=0.168  Sum_probs=90.0

Q ss_pred             EEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHHHhcc
Q 021388          149 IIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REVIDAL  221 (313)
Q Consensus       149 iiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~l~~m  221 (313)
                      |||+|.||.++|+.|...|++|.+|||+++..     .+.....+..++++++|+|++|+|...+.+.++.  .+.++.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999987632     2334456889999999999999998777777762  5677789


Q ss_pred             CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       222 k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ++|.++||++..++-..+.+.+.+++..+.  .+|.
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda  114 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA  114 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence            999999999999988889999999887776  5663

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.13  E-value=1.1e-10  Score=109.24  Aligned_cols=91  Identities=21%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      ..+.|++|||||+|+||+++|+.|+.+|++|.++++.....      .++. ..+.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            35899999999999999999999999999999887654321      2333 34789999999999999997655 6677


Q ss_pred             CHHHHhccCCCcEEEEcCCC
Q 021388          214 NREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg  233 (313)
                      +++.++.|++|+++ -.+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            77888999999988 54555

>PLN02256 arogenate dehydrogenase

Probab=99.11  E-value=1.1e-09  Score=102.01  Aligned_cols=105  Identities=14%  Similarity=0.252  Sum_probs=79.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELA-SNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      -.+++|||||+|.||+.+|+.++..|++|.+|+++....    .+.....+.++++ .++|+|++|+|. ..+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence            466799999999999999999999999999999875321    1233345777776 479999999994 3566666332


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ....++++++++|++..+-+..+++.+.+..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            2567899999999999776666667666644

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.11  E-value=1.9e-10  Score=112.94  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------c--cccCCCHHHHh---hcCCEEEEecCCChhhhcc
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------K--YKYYPSVVELA---SNCHILVVACPLTEETRHI  212 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~--~~~~~~l~e~~---~~aDvV~~~lp~~~~t~~l  212 (313)
                      .|||||+|.||+.||++|...|++|.+|||+++...        +  .....++++++   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            389999999999999999999999999999876321        1  22345677766   4689999999988888888


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      + .++++.+++|.++||++.....|...+.+.+.+..+.  .+|+
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda  122 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS  122 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence            7 5688889999999999999999999999999999887  5554

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02712 arogenate dehydrogenase

Probab=99.09  E-value=2.8e-10  Score=116.38  Aligned_cols=109  Identities=14%  Similarity=0.271  Sum_probs=84.2

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhh-cCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELAS-NCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.+++|||||+|.||+.+|+.++.+|++|.+||++....    .+.....++++++. .+|+|++|+|. ..+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence            456788999999999999999999999999999999875421    23333567888776 59999999994 5677777


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      .+-....||+|++++|++.++-...+.+.+.+..+
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence            55444479999999999999855556666555443

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.07  E-value=2.3e-10  Score=110.31  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=81.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ..+.|++++|+|+|.||+.+++.++++|++|+++|+++.+.     .++. ..++++.++.+|+|+.+..    +.++++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHH
Confidence            35799999999999999999999999999999998876532     2332 2356788899999988754    456788


Q ss_pred             HHHHhccCCCcEEEEcCCCcc-ccHHHHHH
Q 021388          215 REVIDALGPKGVLINIGRGPH-VDERELVS  243 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~-vd~~al~~  243 (313)
                      .+.+..||+|++++|+|++.+ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 77777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.06  E-value=8e-10  Score=107.60  Aligned_cols=129  Identities=16%  Similarity=0.223  Sum_probs=93.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----ccc----------------cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----KYK----------------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~~----------------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|||||+|.||..+|..+.. |++|++||+++.+..    +..                .+++..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            689999999999999999877 799999999876321    110                12333456889999999999


Q ss_pred             CCh------hhhccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEec----CCCCCCCCCC----
Q 021388          205 LTE------ETRHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLD----VFENEPHVPE----  266 (313)
Q Consensus       205 ~~~------~t~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lD----V~~~Ep~~~~----  266 (313)
                      ...      +...+.  .+...+.+++|.++|+.|+..+-..+.+++.+.+.  ++.  ..|    +|.+||..+.    
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~--~~~~~~~~~~PE~v~~G~a~~  163 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT--FNQDFYVGYSPERINPGDKKH  163 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC--cCCCeeEeeCCCcCCCCcccc
Confidence            662      334444  34677889999999999999998888765554432  332  233    4678987653    


Q ss_pred             cccCCCceEE
Q 021388          267 ELFGLENVVL  276 (313)
Q Consensus       267 ~L~~~pnv~l  276 (313)
                      .+...|+++.
T Consensus       164 ~~~~~~riv~  173 (425)
T PRK15182        164 RLTNIKKITS  173 (425)
T ss_pred             cccCCCeEEE
Confidence            4677777754

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.02  E-value=3.2e-09  Score=103.83  Aligned_cols=137  Identities=18%  Similarity=0.239  Sum_probs=97.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ++|+||| +|.||+.+|+.|+..|++|.+|++++...      .+.....+..+.+.++|+|++|+|.. .+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            4799997 99999999999999999999999876532      12333457788899999999999953 445555 667


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC--CCCcccCCCceEEccCCCCCcHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH--VPEELFGLENVVLMPHVGSGTVETRKT  290 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~--~~~~L~~~pnv~lTPH~a~~t~~~~~~  290 (313)
                      .+.++++++++|++.......+++.+.+..+ ..  .+..   -|.  +..+++.-..++++|+-. .+.+...+
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~~-~~~~~~~~  146 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTEK-RSNPWFDK  146 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCCC-CCHHHHHH
Confidence            7789999999999987666666666665432 22  2222   333  223577778899999652 33444333

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.02  E-value=3.3e-09  Score=98.48  Aligned_cols=99  Identities=19%  Similarity=0.210  Sum_probs=76.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c------------cccCCCHHHHhhcC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K------------YKYYPSVVELASNC  196 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~e~~~~a  196 (313)
                      ++|||||+|.||.++|+.+...|++|.+||++++...                +            .....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            6899999999999999999999999999998765321                0            01122223568999


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHH
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALV  246 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~  246 (313)
                      |+|+.|+|..++.+..+-++..+.++++++|+ |+|..+   ...+.+.+.
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            99999999999988887777778899999886 777664   344555554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.96  E-value=4.7e-09  Score=96.72  Aligned_cols=136  Identities=19%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc-ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KY-KYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ++|||||+|.||+++|+.|+..|++|.+||++++...     +. ....+..+.++++|+|++|+|... ...++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence            3799999999999999999999999999998765321     11 112222356789999999999433 33333 6677


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec---CCCCCCCCC----CcccCCCceEEccCCCCCcHHHHH
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD---VFENEPHVP----EELFGLENVVLMPHVGSGTVETRK  289 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD---V~~~Ep~~~----~~L~~~pnv~lTPH~a~~t~~~~~  289 (313)
                      +.++++++++|++.-..-    ..+++......  .+.   ++..|.-..    ..|+.-.++++||+-.+ +.+..+
T Consensus        79 ~~l~~~~ii~d~~Svk~~----~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~-~~~~~~  149 (279)
T PRK07417         79 PALPPEAIVTDVGSVKAP----IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT-DLNALA  149 (279)
T ss_pred             HhCCCCcEEEeCcchHHH----HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC-CHHHHH
Confidence            788999999999876532    33333332212  222   222221110    12677788999997553 344333

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.96  E-value=2.7e-09  Score=99.71  Aligned_cols=82  Identities=23%  Similarity=0.398  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh-cc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID-AL  221 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~-~m  221 (313)
                      .+++|||||+|.||+++|++|...|++|.+|+|+..        .+++++++++|+|++++|. +..+.++ ++... .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~-~~l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVA-EQVQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHH-HHHHHhcC
Confidence            457899999999999999999999999999999753        4688899999999999997 4666666 33333 47


Q ss_pred             CCCcEEEEcCCCc
Q 021388          222 GPKGVLINIGRGP  234 (313)
Q Consensus       222 k~ga~lIn~~rg~  234 (313)
                      ++++++|++++|-
T Consensus        73 ~~~~ivi~~s~gi   85 (308)
T PRK14619         73 PPETIIVTATKGL   85 (308)
T ss_pred             CCCcEEEEeCCcc
Confidence            8899999998853

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.96  E-value=1e-08  Score=94.86  Aligned_cols=110  Identities=11%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-----------------------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-----------------------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-----------------------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||+|.||..+|..+...|++|.+||++++....                             .....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            57999999999999999999999999999987653110                             1124567788999


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|..++   ..+.+.++. .-+..++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999988777666556677788999876 78888554   445555543 2222355555

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=4.4e-09  Score=92.75  Aligned_cols=111  Identities=23%  Similarity=0.263  Sum_probs=96.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC-----ccccccCCCHHHH---hhcCCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-----NLKYKYYPSVVEL---ASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~-----~~~~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      ++||.||+|+||..++++++..|++|.+||+++..     ..++....+++++   +....+|.+++|...-|..++ ++
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            47999999999999999999999999999998763     2344456677775   456789999999887777776 77


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      +.+.|.+|-++||-+...--|.....+.|.++.+.  .+||=
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            88999999999999999999999999999999998  89984

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.93  E-value=1.5e-08  Score=98.54  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----c--ccCCCHHHH---------------hhcCCEEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----Y--KYYPSVVEL---------------ASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~--~~~~~l~e~---------------~~~aDvV~~~l  203 (313)
                      ++|+|||+|.||..+|..|+..|++|++||++++....    .  .....++++               +++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            68999999999999999999999999999998763221    0  011234443               23799999999


Q ss_pred             CCC------hhhhccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          204 PLT------EETRHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       204 p~~------~~t~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      |..      ++...+.  -++..+.+++|+++|+.|+..+-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            964      1112221  25677889999999999999998899988878764

>PLN02712 arogenate dehydrogenase

Probab=98.91  E-value=1.1e-08  Score=104.80  Aligned_cols=104  Identities=15%  Similarity=0.254  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----ccccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELA-SNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      -+.++|||||+|.||+.+|+.++.+|++|.+||++...    ..+.....++++++ .++|+|++|+|. ..+..++.+-
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence            45578999999999999999999999999999987432    12333455777865 569999999994 4567777553


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      .+..+++|++|+|++.-+..-.+++.+.+.
T Consensus       129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~  158 (667)
T PLN02712        129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLP  158 (667)
T ss_pred             hhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence            346789999999998665333334444443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.90  E-value=1.9e-08  Score=92.53  Aligned_cols=141  Identities=21%  Similarity=0.296  Sum_probs=94.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC--c-----ccc--ccCCCH-HHHhhcCCEEEEecCCChhhhccc
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP--N-----LKY--KYYPSV-VELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~--~-----~~~--~~~~~l-~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      .++|+|+|+|.||+.+|+.++..|+.|.+++++...  .     .+.  ....+. .+....+|+|++++|-. .+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            468999999999999999999999987555544332  1     121  111233 56778899999999954 344454


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC----CCcccCCCceEEccCCCCCcHHHHH
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV----PEELFGLENVVLMPHVGSGTVETRK  289 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~----~~~L~~~pnv~lTPH~a~~t~~~~~  289 (313)
                       +++...+|+|++++|++.-.---.+++.+.+.++. .     +...-|+-    ..+++..-.+++||.-... .+...
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~-~~~~~  153 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEGTE-KEWVE  153 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCCCC-HHHHH
Confidence             66777899999999999887555555555554432 2     22334432    2368888899999964433 44444


Q ss_pred             HHHH
Q 021388          290 TMAD  293 (313)
Q Consensus       290 ~~~~  293 (313)
                      ++.+
T Consensus       154 ~~~~  157 (279)
T COG0287         154 EVKR  157 (279)
T ss_pred             HHHH
Confidence            4433

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.90  E-value=2.7e-09  Score=89.45  Aligned_cols=86  Identities=21%  Similarity=0.281  Sum_probs=62.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      |++|+|+|||||+.|++.|.+|+..|.+|++-.|...+      ..|+. ..+..|.+++||+|++.+|+.. ...++.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEV-QPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence            67999999999999999999999999999988776542      22343 4579999999999999999543 3446678


Q ss_pred             HHHhccCCCcEEEE
Q 021388          216 EVIDALGPKGVLIN  229 (313)
Q Consensus       216 ~~l~~mk~ga~lIn  229 (313)
                      +....||+|+.++=
T Consensus        80 ~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   80 EIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHS-TT-EEEE
T ss_pred             HHHhhCCCCCEEEe
Confidence            88899999998754

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.90  E-value=4.5e-09  Score=98.33  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC-C-----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK-P-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~-~-----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++... .     ..++. ..+..+++++||+|++++|...+ ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            5789999999999999999999999999876654332 1     12333 34688889999999999994433 344556


Q ss_pred             HHHhccCCCcEEEEcCCCc
Q 021388          216 EVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~  234 (313)
                      +....++++. +|.++-|=
T Consensus        79 ei~~~l~~g~-iVs~aaG~   96 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGF   96 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCc
Confidence            6778888886 78887774

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.89  E-value=1.1e-08  Score=95.61  Aligned_cols=141  Identities=18%  Similarity=0.247  Sum_probs=90.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCcc-----cc--ccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNL-----KY--KYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      .++|+|||+|.||..+|+.++..|.  +|.+||++++...     +.  ....+.++.++++|+|++|+|... ...++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH-
Confidence            4689999999999999999998885  7999999865311     21  123467788899999999999532 33333 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC---CCCCCC---CC-CcccCCCceEEccCCCCCcHHH
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV---FENEPH---VP-EELFGLENVVLMPHVGSGTVET  287 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV---~~~Ep~---~~-~~L~~~pnv~lTPH~a~~t~~~  287 (313)
                      ++....++++.++++++..+.-..+++.+.+.. .+.  .++.   +..|-.   .. .+|++-.+++++|+-++ +.+.
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~  159 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAA  159 (307)
T ss_pred             HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHH
Confidence            556677899999999977653223333333322 222  3332   222211   11 25667778899996543 4444


Q ss_pred             HHH
Q 021388          288 RKT  290 (313)
Q Consensus       288 ~~~  290 (313)
                      .+.
T Consensus       160 ~~~  162 (307)
T PRK07502        160 VAR  162 (307)
T ss_pred             HHH
Confidence            443

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.89  E-value=2.4e-08  Score=95.39  Aligned_cols=137  Identities=20%  Similarity=0.242  Sum_probs=91.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ++|+|||+|.||+++|+.++..|++|.+|++++....     +..    ...++++++++||+|++|+|.. .+..++ +
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence            4799999999999999999999999888887655321     111    2346788899999999999953 455555 4


Q ss_pred             HHHh-ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC----------CcccCCCceEEccCCCCCc
Q 021388          216 EVID-ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP----------EELFGLENVVLMPHVGSGT  284 (313)
Q Consensus       216 ~~l~-~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~----------~~L~~~pnv~lTPH~a~~t  284 (313)
                      +... .++++++++|++.-+.-..+++.+.+. ....  .++.+   |.+.          ..|+.....++||+-.. +
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~~-~  151 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDHT-D  151 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCCC-C
Confidence            4544 488999999999877544444444322 2222  33432   4322          14677777899997543 3


Q ss_pred             HHHHHH
Q 021388          285 VETRKT  290 (313)
Q Consensus       285 ~~~~~~  290 (313)
                      .+..+.
T Consensus       152 ~~~~~~  157 (359)
T PRK06545        152 PDAVAE  157 (359)
T ss_pred             HHHHHH
Confidence            344433

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.88  E-value=3.9e-09  Score=98.02  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=83.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      -+.||++.|.|||.+|+.+|++++++|++|++.+..+-...     |+. ...+++....+|+++.+..    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEccC----CcCccCH
Confidence            37999999999999999999999999999999987664322     333 3468999999999998876    7889999


Q ss_pred             HHHhccCCCcEEEEcCCCcc-ccHHHHHH
Q 021388          216 EVIDALGPKGVLINIGRGPH-VDERELVS  243 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~-vd~~al~~  243 (313)
                      +.+..||+|+++-|.|.-.+ +|...|.+
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHH
Confidence            99999999999999998766 67766654

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.87  E-value=3e-08  Score=90.49  Aligned_cols=99  Identities=19%  Similarity=0.279  Sum_probs=76.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC----CEEEe-cCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYY-SRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~-~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++|||||+|+||.++++.|...|+    +|++| +|+++..     .+.....+..++++++|+|++|+| ......++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            479999999999999999998888    88888 8876532     234445678888999999999997 45566666 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            4566678899999988665  466677766543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.87  E-value=3.5e-08  Score=95.90  Aligned_cols=131  Identities=13%  Similarity=0.201  Sum_probs=90.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV  199 (313)
                      ++|||||+|.||..+|..|...|++|++||++++...                        + .....+++++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            3799999999999999999999999999998765211                        1 22335678888999999


Q ss_pred             EEecCCChh---------hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH-HhC-CeeEEEecC---CCCCCCCC
Q 021388          200 VVACPLTEE---------TRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL-VEG-RLGGAGLDV---FENEPHVP  265 (313)
Q Consensus       200 ~~~lp~~~~---------t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al-~~~-~l~ga~lDV---~~~Ep~~~  265 (313)
                      ++|+|....         .... .++..+.+++|.++|+.|+-.+-..+.+.+.+ ++. .+. .+.|.   +.+|...+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~-~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~  158 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESA-AETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLRE  158 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHH-HHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCC
Confidence            999996542         2222 24566778999999999988777777886544 431 121 13342   34444333


Q ss_pred             C----cccCCCceEEc
Q 021388          266 E----ELFGLENVVLM  277 (313)
Q Consensus       266 ~----~L~~~pnv~lT  277 (313)
                      .    .++..+.+++.
T Consensus       159 G~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       159 GNAVHDLLNPDRIVGG  174 (411)
T ss_pred             CChhhhhcCCCEEEEe
Confidence            2    35666777766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.87  E-value=8.5e-09  Score=95.25  Aligned_cols=130  Identities=21%  Similarity=0.245  Sum_probs=89.5

Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||+|+|||.| .||++||.+|...|++|.+|++...         ++.+++++||+|+++++..+    .+....
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------~l~e~~~~ADIVIsavg~~~----~v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------DAKALCRQADIVVAAVGRPR----LIDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCChh----cccHhh
Confidence            457999999999996 9999999999999999999987542         68899999999999998543    454444


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV  295 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~  295 (313)
                         +|+|+++||+|.-.+.+         +|  ++   .=||-..+ .     .+. --.+||--||--.-+..-+.+..
T Consensus       221 ---ik~GaiVIDvgin~~~~---------~g~~kl---~GDvdf~~-~-----~~~-a~~iTPVPGGVGp~Tva~L~~N~  278 (301)
T PRK14194        221 ---LKPGAVVIDVGINRIDD---------DGRSRL---VGDVDFDS-A-----LPV-VSAITPVPGGVGPMTIAFLMKNT  278 (301)
T ss_pred             ---ccCCcEEEEecccccCC---------CCCcce---ecccchHH-H-----Hhh-cceecCCCCchhHHHHHHHHHHH
Confidence               89999999999654321         13  33   44663111 1     111 12688877776554444444444


Q ss_pred             HHHHHHHH
Q 021388          296 LGNLEAHF  303 (313)
Q Consensus       296 ~~nl~~~~  303 (313)
                      ++.-+++.
T Consensus       279 ~~a~~~~~  286 (301)
T PRK14194        279 VTAARLQA  286 (301)
T ss_pred             HHHHHHHH
Confidence            44444444

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.87  E-value=2.9e-09  Score=81.93  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=62.9

Q ss_pred             EEEEEcCChHHHHHHHHHHhCC---CCEE-EecCCCCCcc------ccccCC-CHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFS---CPIN-YYSRTEKPNL------KYKYYP-SVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G---~~V~-~~~~~~~~~~------~~~~~~-~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ||||||+|+||.++++.+...|   .+|. +++|++++..      +..... +..++++++|+|++++|  |+...-+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence            6999999999999999999999   8898 5588876432      222233 78899999999999998  43333333


Q ss_pred             HHHHhccCCCcEEEEcCCC
Q 021388          215 REVIDALGPKGVLINIGRG  233 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg  233 (313)
                      .+. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            444 667789999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.86  E-value=2.3e-08  Score=92.71  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=89.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            6899999999999999999999999999998764211                1             11234554 4789


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHh-CCeeEEEecCCCCCCCCCCcccCCCc
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVE-GRLGGAGLDVFENEPHVPEELFGLEN  273 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~-~~l~ga~lDV~~~Ep~~~~~L~~~pn  273 (313)
                      ||+|+.++|...+.+..+-+++.+.++++++++ |++.-.+   ..+.+.+.. .++.  ++-.+.  |.+-.     +-
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~~--g~h~~~--p~~~~-----~~  151 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERFI--GIHFMN--PVPVM-----KL  151 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccEE--EeeccC--CcccC-----ce
Confidence            999999999887766555467778899999997 6665543   356666642 2332  444443  32222     22


Q ss_pred             eEEccCCCCCcHHHHHHHHHH
Q 021388          274 VVLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       274 v~lTPH~a~~t~~~~~~~~~~  294 (313)
                      +-+.|+.+ .+++..+++...
T Consensus       152 vei~~g~~-t~~~~~~~~~~~  171 (292)
T PRK07530        152 VELIRGIA-TDEATFEAAKEF  171 (292)
T ss_pred             EEEeCCCC-CCHHHHHHHHHH
Confidence            34666643 344444444433

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.84  E-value=5.1e-08  Score=91.46  Aligned_cols=101  Identities=15%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------------c-----cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------------K-----YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------------~-----~~~~~~l~e~~~~aDvV  199 (313)
                      ++|||||.|.||..+|..+...|++|.+||++++...                    +     .....++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            6899999999999999999999999999999764210                    0     12345788999999999


Q ss_pred             EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +-++|...+.+..+-++.-+.+++++ ++.+++.+ ....++.+.++.
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~  133 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATH  133 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCC
Confidence            99999999988887788888999998 45555553 466777777744

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.84  E-value=1.1e-07  Score=90.70  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=84.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHh-CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEA-FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      +...+|+|||+ |.||+.+|+.++. +|.+|++||+..+      ...++++.+++||+|++|+|.. .+..++ +++..
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l-~~l~~   73 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALI-EEYVA   73 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHH-HHHhh
Confidence            35679999999 9999999999995 5899999998521      1336778899999999999943 344444 44443


Q ss_pred             ---ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC---CcccCCCceEEccC
Q 021388          220 ---ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP---EELFGLENVVLMPH  279 (313)
Q Consensus       220 ---~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~---~~L~~~pnv~lTPH  279 (313)
                         .++++++++|++.-+.    ...+++.....     ++...-|..-   ..+++.-++++||.
T Consensus        74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             hhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence               3899999999998763    22233322211     2334445432   25777778999996

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.84  E-value=3.2e-09  Score=102.21  Aligned_cols=96  Identities=17%  Similarity=0.226  Sum_probs=73.2

Q ss_pred             CCCCCCcccc-cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC------CCC-----ccccccCCCHHHHhhcCC
Q 021388          130 KWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT------EKP-----NLKYKYYPSVVELASNCH  197 (313)
Q Consensus       130 ~w~~~~~~~~-~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~------~~~-----~~~~~~~~~l~e~~~~aD  197 (313)
                      .|.+..++.. ..|.||+|+|||+|++|+.-|..|+..|.+|.+--|.      .+.     ..++. ..+++|++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhCC
Confidence            4776555433 4599999999999999998888888888887733322      111     12343 467999999999


Q ss_pred             EEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388          198 ILVVACPLTEETRHIINREVIDALGPKGVLI  228 (313)
Q Consensus       198 vV~~~lp~~~~t~~li~~~~l~~mk~ga~lI  228 (313)
                      +|++.+|++.  .+.+.++.++.||+|+.|.
T Consensus       100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225        100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             EEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence            9999999883  5566699999999999875

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.84  E-value=4.5e-08  Score=90.54  Aligned_cols=138  Identities=16%  Similarity=0.219  Sum_probs=93.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------------ccccCCCHHHHhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------------KYKYYPSVVELAS  194 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~e~~~  194 (313)
                      ++|+|||.|.||.++|..+...|++|..||++++...                              ......++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998764210                              0112457888899


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCc
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLEN  273 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pn  273 (313)
                      .||+|+.++|...+.+..+-++..+.++++++++ |+|.   .....+.+.+.... +..++-.       ..|.+..|.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt---~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST---LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc---CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCe
Confidence            9999999999776655555466777788999885 4443   24456666654322 2223322       234556788


Q ss_pred             eEEccCCCCCcHHHHHHHHHH
Q 021388          274 VVLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       274 v~lTPH~a~~t~~~~~~~~~~  294 (313)
                      +.+.|+-. .+++..+++.+.
T Consensus       153 vevv~~~~-t~~~~~~~~~~~  172 (287)
T PRK08293        153 AEIMGHPG-TDPEVFDTVVAF  172 (287)
T ss_pred             EEEeCCCC-CCHHHHHHHHHH
Confidence            88888644 344555544333

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.83  E-value=8.4e-08  Score=92.09  Aligned_cols=121  Identities=13%  Similarity=0.205  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .+...+..+-.++...|+..      .......      .....++|+||| +|.||+.+|+.|+..|++|.+||++.. 
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~~------~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-  133 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSE------NDKGFKT------LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-  133 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHh------HHhcccc------cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-
Confidence            34455666666776666442      1111211      112457999998 999999999999999999999998531 


Q ss_pred             ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHH
Q 021388          180 NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSA  244 (313)
Q Consensus       180 ~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~a  244 (313)
                             .+.++++++||+|++|+|... +..++ +++.. +++|++++|++..+..-.+++.+.
T Consensus       134 -------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        134 -------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             -------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence                   356788999999999999654 34455 44555 899999999987654334444443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.81  E-value=4.9e-08  Score=97.03  Aligned_cols=110  Identities=14%  Similarity=0.131  Sum_probs=80.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV  199 (313)
                      ++|||||+|.||.++|..+...|++|.+||++++...                        + .....++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999999765321                        1 23356788899999999


Q ss_pred             EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      +.++|...+.+..+-+++-+.++++++ |.+++.++- ...+.+.+.....  ...+-+
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi~-~s~l~~~~~~~~r--~~~~hP  139 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGFL-PSDLQEGMTHPER--LFVAHP  139 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCCC-HHHHHhhcCCcce--EEEEec
Confidence            999998877676554555566777765 555555543 5577777754432  255544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.77  E-value=9.8e-08  Score=88.38  Aligned_cols=138  Identities=19%  Similarity=0.260  Sum_probs=90.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~~  195 (313)
                      ++|||||.|.||..+|..+...|++|..||++++...                +.             ....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            4899999999999999999999999999998876311                10             023456 45799


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhcc-CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388          196 CHILVVACPLTEETRHIINREVIDAL-GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV  274 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~m-k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv  274 (313)
                      ||+|+-++|.+.+.+..+-.+.-+.+ ++++++++.+.+-.+  .++..+++... +..++..|.+-|.       .|-|
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~~-r~~g~hf~~P~~~-------~~lv  154 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRPG-RVLGLHFFNPVPV-------LPLV  154 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCc-cEEEEecCCCccc-------CceE
Confidence            99999999999998887755554555 899999887766444  44444443221 1235555543332       3334


Q ss_pred             EEccCCCCCcHHHHHHHHHH
Q 021388          275 VLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       275 ~lTPH~a~~t~~~~~~~~~~  294 (313)
                      =++|+.+ .+.+..+++...
T Consensus       155 Elv~~~~-T~~~~~~~~~~~  173 (286)
T PRK07819        155 ELVPTLV-TSEATVARAEEF  173 (286)
T ss_pred             EEeCCCC-CCHHHHHHHHHH
Confidence            5555433 334444444443

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.75  E-value=1.3e-07  Score=86.96  Aligned_cols=127  Identities=20%  Similarity=0.315  Sum_probs=81.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCc-----cccc-cCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPN-----LKYK-YYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~-----~~~~-~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      ++|+|||+|.||+++|+.|+..|+  +|++||++++..     .+.. ...+.+++. ++|+|++|+|... ...++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence            379999999999999999998885  789999876532     1221 234666765 5999999999543 33344 45


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC---C---CCCCC-cccCCCceEEccCC
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN---E---PHVPE-ELFGLENVVLMPHV  280 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~---E---p~~~~-~L~~~pnv~lTPH~  280 (313)
                      ..+ +++++++++++.-    ...+.+.+.+.. .+..++....   |   |.... .+++-..++++|.-
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~  142 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE  142 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence            666 8999999997653    344555554431 1113333321   1   11111 25555567888854

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.75  E-value=1.1e-07  Score=87.92  Aligned_cols=89  Identities=18%  Similarity=0.087  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCc----------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCC
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK  224 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g  224 (313)
                      -|++||++|...|++|++||+++...          .|.....+..++++++|+|++|+|..++++.++ ...++.+++|
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~G  109 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPEN  109 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCC
Confidence            48899999999999999999875421          245566789999999999999999888888887 5689999999


Q ss_pred             cEEEEcCCCccccHHHHHHHHHh
Q 021388          225 GVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       225 a~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +++||+++.+   .+.+...|+.
T Consensus       110 aIVID~STIs---P~t~~~~~e~  129 (341)
T TIGR01724       110 AVICNTCTVS---PVVLYYSLEK  129 (341)
T ss_pred             CEEEECCCCC---HHHHHHHHHH
Confidence            9999998765   4555555544

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.73  E-value=4.3e-08  Score=90.14  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=77.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++|||||+|+||.++++.|...|+    +|+++||+++..      .+.....+..+++++||+|++|+| +.....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence            589999999999999999998774    599999876532      233344577788999999999999 35555555 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      +++...++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            5565667889999999988  67788888774

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.72  E-value=7.9e-08  Score=88.58  Aligned_cols=101  Identities=16%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCc-------cccccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPN-------LKYKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~-------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+++|||||+|+||.++++.|...|    .+|.+++|+....       .+.....+..++++++|+|++++|.. ....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence            3579999999999999999999887    6799999865311       13334567788899999999999933 3444


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ++ .++...++++.++|++.-|  +..+.+.+.+..
T Consensus        81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            44 5566667889999998655  356666666543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.72  E-value=9.1e-08  Score=95.26  Aligned_cols=113  Identities=20%  Similarity=0.340  Sum_probs=84.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|||||+|.||+.||..+...|++|.+||++++...                +             .....++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            6799999999999999999999999999999876311                1             122356655 569


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHh-CCeeEEEecCCCCCCC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVE-GRLGGAGLDVFENEPH  263 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~-~~l~ga~lDV~~~Ep~  263 (313)
                      ||+|+-++|...+.+..+-.++-..+++++++ +|+|.-++-   .+.+++.. .++  .++..|.+-|.
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~--~G~hff~Pa~v  151 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV--AGLHFFNPVPL  151 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE--EEEeecCCccc
Confidence            99999999999998887766665667899999 599887763   56666643 233  36666654443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.71  E-value=2.7e-07  Score=85.09  Aligned_cols=100  Identities=13%  Similarity=0.178  Sum_probs=74.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999998765321                1             01123444 4789


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ||+|+.++|.....+.-+-+++.+.++++++++....|  +....+.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999977776655556677788999988444333  556688887743

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.71  E-value=8.9e-08  Score=92.27  Aligned_cols=123  Identities=13%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------------------cccc--CCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------------------KYKY--YPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------------------~~~~--~~~l~e~~~~aDvV~~  201 (313)
                      ++|+|||+|.||..+|..+. .|++|++||+++++..                     ....  ..+..+.+++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            37999999999999997766 4999999998765311                     0111  1235677899999999


Q ss_pred             ecCCChh----------hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC----c
Q 021388          202 ACPLTEE----------TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE----E  267 (313)
Q Consensus       202 ~lp~~~~----------t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~----~  267 (313)
                      |+|...+          .+..+ ++... +++|.++|+.|+-.+-..+.+.+.+.+..+.      |.+|.+.+.    .
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d  151 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD  151 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence            9996521          12222 33444 7999999999999999999999888765543      477766543    4


Q ss_pred             ccCCCceEE
Q 021388          268 LFGLENVVL  276 (313)
Q Consensus       268 L~~~pnv~l  276 (313)
                      +...|+|++
T Consensus       152 ~~~p~rvv~  160 (388)
T PRK15057        152 NLHPSRIVI  160 (388)
T ss_pred             ccCCCEEEE
Confidence            566666654

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.71  E-value=6.3e-08  Score=89.58  Aligned_cols=79  Identities=20%  Similarity=0.324  Sum_probs=66.8

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEec-CCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          140 TKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYS-RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      .++.||+|+||| .|.||++||.+|...|+.|.+|+ ++.          ++++++++||+|+++++...    .+.+..
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence            469999999999 99999999999999999999995 543          47899999999999998654    444433


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                         +|+|+++||+|--.+
T Consensus       220 ---lk~GavVIDvGin~~  234 (296)
T PRK14188        220 ---IKPGATVIDVGINRI  234 (296)
T ss_pred             ---ecCCCEEEEcCCccc
Confidence               899999999986553

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.70  E-value=8.3e-08  Score=80.13  Aligned_cols=106  Identities=21%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcc------cc----ccCCCHHHHhhcCCEEEEecCCChh-
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNL------KY----KYYPSVVELASNCHILVVACPLTEE-  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~e~~~~aDvV~~~lp~~~~-  208 (313)
                      .+.+++++|+|.|.||+.+++.+...| .+|.+++++.+...      +.    ....+..++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            366789999999999999999999886 67999998865321      11    1234677778999999999997654 


Q ss_pred             hhc-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          209 TRH-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       209 t~~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ... .+..   ..++++.+++|++..+...  .+.+++++.++.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            222 2222   2368999999998875443  888888887664

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.70  E-value=1.8e-07  Score=87.46  Aligned_cols=136  Identities=17%  Similarity=0.181  Sum_probs=86.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||.++|..+...|++|.+||++++...                +.             ....++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            4799999999999999999999999999999864211                11             234578888999


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceE
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVV  275 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~  275 (313)
                      +|+|+.++|...+.+..+-++. ..+.++..++.++... .....+.+.+.....  ...|-+-+-|      +-.|=+.
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l-~~~~~~~~ii~ssts~-~~~~~la~~~~~~~~--~~~~hp~~p~------~~~~lve  152 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAEL-DALAPPHAILASSTSA-LLASAFTEHLAGRER--CLVAHPINPP------YLIPVVE  152 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHH-HHhCCCcceEEEeCCC-CCHHHHHHhcCCccc--EEEEecCCCc------ccCceEE
Confidence            9999999997765554443433 3333444444444443 456678887755443  2445443211      1113356


Q ss_pred             EccCCCCCcHHHHHHH
Q 021388          276 LMPHVGSGTVETRKTM  291 (313)
Q Consensus       276 lTPH~a~~t~~~~~~~  291 (313)
                      ++|+-+ .+++..+++
T Consensus       153 iv~~~~-t~~~~~~~~  167 (308)
T PRK06129        153 VVPAPW-TAPATLARA  167 (308)
T ss_pred             EeCCCC-CCHHHHHHH
Confidence            888744 334444443

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.69  E-value=6.1e-08  Score=91.32  Aligned_cols=98  Identities=22%  Similarity=0.247  Sum_probs=75.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------c------cccCCCHHHHhhcCCEEEEecC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------K------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .++|+|||+|.||..+|.+|...|++|.+|+|+++...             +      .....++++.++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            45899999999999999999999999999999754210             1      1234578888899999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCC-cccc--HHHHHHHHHh
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRG-PHVD--ERELVSALVE  247 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg-~~vd--~~al~~al~~  247 (313)
                      ... +     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            552 2     5566889999999999997 4333  5566666655

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.69  E-value=2.7e-07  Score=85.56  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=74.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------------cc-------------ccCCCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------------KY-------------KYYPSVVEL  192 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~e~  192 (313)
                      ++|+|||.|.||..+|..+...|++|++||++++...                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998764311                   00             012234 56


Q ss_pred             hhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          193 ASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       193 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +++||+|+.++|...+.+..+-+++-+.+++++++++...|  +....+.+.+..
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~  135 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER  135 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence            78999999999977655554445566678899999877666  466777777753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.67  E-value=3.3e-07  Score=80.47  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=81.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHHhh-cCCEEEEecCCChhhhc
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVELAS-NCHILVVACPLTEETRH  211 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~  211 (313)
                      +.++.|++++|+|+|+||+.+|+.|..+|++|+++|++.+...      +.... +.++++. ++|+++.|..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cc
Confidence            3468999999999999999999999999999999998765311      22222 3355554 7999986654     35


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +++++.++.|+ ..+++..+-+...| ..-.+.|++..+.
T Consensus        97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            78999999997 56888888888876 6677888888887

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.67  E-value=3.4e-08  Score=94.65  Aligned_cols=91  Identities=14%  Similarity=0.249  Sum_probs=72.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccc---c---CCCHHHHhhcCCEEEEecCCC-h
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYK---Y---YPSVVELASNCHILVVACPLT-E  207 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~---~---~~~l~e~~~~aDvV~~~lp~~-~  207 (313)
                      .+.+.++.|+|.|.+|+.+++.++++|++|.++|+++....      +..   .   ..++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            36778899999999999999999999999999998754211      110   1   134667789999999998643 2


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcC
Q 021388          208 ETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            345678999999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.65  E-value=3.9e-07  Score=85.11  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=71.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------c--------------cccCCCHHHHhhcCCEEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------K--------------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~e~~~~aDvV~  200 (313)
                      ++|+|||.|.||..+|..+...|++|.+||++.+...          +              .....+.++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999998764211          1              112356778889999999


Q ss_pred             EecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          201 VACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +++|...+.+..+-+++-..++++++++....|  +....+.+.+..
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~  129 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR  129 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence            999976544433334444556777766533333  345677777643

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.64  E-value=1.5e-07  Score=80.38  Aligned_cols=90  Identities=21%  Similarity=0.350  Sum_probs=74.7

Q ss_pred             cccCCCEEEEEcCChH-HHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          140 TKFTGKTVGIIGLGRI-GMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       140 ~~l~g~~igiiG~G~i-G~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ..+.|+++.|||.|.| |..+|+.|...|++|.+.+|+.         .++.+.++++|+|+.+++..    +++..+. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~----~ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP----GLVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC----ceecHHH-
Confidence            3589999999999996 8889999999999999999863         36788999999999999843    3677764 


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeE
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGG  252 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~g  252 (313)
                        ++++.++||++...-+|       ..++++.|
T Consensus       106 --~~~~~viIDla~prdvd-------~~~~~~~G  130 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD-------KSGGKLVG  130 (168)
T ss_pred             --ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence              57899999999988887       55556543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.64  E-value=7.8e-08  Score=94.37  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCcc----------ccccCCCHHHHhhc---CCEEEEecCCChhhhcccCHHHHhcc
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPNL----------KYKYYPSVVELASN---CHILVVACPLTEETRHIINREVIDAL  221 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~li~~~~l~~m  221 (313)
                      ||+.||++|...|++|.+|||++++..          +...+.+++++++.   +|+|++++|..+.++.++ .++++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999999999999876321          24456789998874   899999999999999988 5689999


Q ss_pred             CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388          222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       222 k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep  262 (313)
                      .+|.++||+|+...-|...+.+.+++..+.....-|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999999844444454443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.63  E-value=1.4e-07  Score=86.62  Aligned_cols=81  Identities=17%  Similarity=0.290  Sum_probs=69.1

Q ss_pred             ccccCCCEEEEEcCChH-HHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGRI-GMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~i-G~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||.|.+ |+++|..|...|++|+++...         ..++.+.+++||+|+.+++    +.++++.  
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~--  217 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA--  217 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence            35799999999999999 999999999999999987643         2368899999999999998    4567877  


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                       ..+|+|+++||+|.-.+
T Consensus       218 -~~ik~gavVIDVGin~~  234 (285)
T PRK14189        218 -DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             -HHcCCCCEEEEcccccc
Confidence             55789999999997654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.62  E-value=3.3e-07  Score=91.10  Aligned_cols=114  Identities=16%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|||||.|.||+.||..+...|++|.+||++++...                +             .....++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            5799999999999999999999999999999865321                1             112456655 569


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH  263 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~  263 (313)
                      ||+|+.++|...+.+..+-.++-+.+++++++. |+|.-++   ..+.+++.. ..+..++.-|.+-|.
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            999999999988888776566666788888876 7766554   456666643 233456776755554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.62  E-value=1.6e-07  Score=86.17  Aligned_cols=80  Identities=23%  Similarity=0.344  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||+++|||. |.||+++|.+|...|++|.+|...         ..++.+.+++||+|+.+++..    +++....
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~----~~v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRG----HFVTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcc----ccCCHHH
Confidence            45799999999999 999999999999999999998422         126889999999999999844    3455544


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         +|+|+++||+|--.
T Consensus       220 ---ik~GavVIDvgin~  233 (284)
T PRK14179        220 ---VKEGAVVIDVGMNR  233 (284)
T ss_pred             ---ccCCcEEEEeccee
Confidence               89999999998655

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.59  E-value=1.2e-07  Score=87.18  Aligned_cols=104  Identities=20%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh--CCCCEE-EecCCCCCcc------c-cccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA--FSCPIN-YYSRTEKPNL------K-YKYYPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      ...+|||||+|.||+.+++.+..  .++++. ++|++++...      + ...+.++++++.++|+|++|+|....  . 
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~-   81 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--R-   81 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--H-
Confidence            34789999999999999999986  478875 7788765321      1 13457899999999999999995432  1 


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                        +-....++.|.-++..+++.+.+.++|.++.++++..
T Consensus        82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence              2223445677777778899888999999999887754

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.59  E-value=1e-07  Score=89.23  Aligned_cols=89  Identities=16%  Similarity=0.335  Sum_probs=69.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------------ccccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------------KYKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|||+|.||..+|..|...|++|.+|+|+++...                   +.....+.++.++++|+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            4799999999999999999999999999998753210                   122345777888999999999995


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                       ..+..++ ++..+.+++++++|+++.|--
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeeccc
Confidence             4555555 456677789999999975543

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=1.1e-06  Score=82.78  Aligned_cols=152  Identities=19%  Similarity=0.254  Sum_probs=118.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----------cccCCCHHHH---hhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------YKYYPSVVEL---ASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~  211 (313)
                      ..||+||+|.||+.+|......|++|.+|+|+.++...          ...+.+++|+   +++-.-|++++-.-.....
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            57999999999999999999999999999998864221          2234567765   5678888888864332344


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHH
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT  290 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~  290 (313)
                      +| ++++..|.+|-++||-|...--|+....++|.+..|...+.-|...|--.-. |       -+.|   |.+.++++.
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-------SiMp---GG~~eay~~  152 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-------SIMP---GGQKEAYEL  152 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-------CcCC---CCCHHHHHH
Confidence            55 7799999999999999999999999999999999999999999888864321 2       2334   677888888


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 021388          291 MADLVLGNLEAHFLNKPL  308 (313)
Q Consensus       291 ~~~~~~~nl~~~~~g~~~  308 (313)
                      +..+ +..|.+-..|+|-
T Consensus       153 v~pi-l~~IaAk~~g~pC  169 (473)
T COG0362         153 VAPI-LTKIAAKVDGEPC  169 (473)
T ss_pred             HHHH-HHHHHhhcCCCCc
Confidence            7776 4556666666653

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.54  E-value=7.9e-07  Score=92.54  Aligned_cols=131  Identities=21%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCc-----cccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPN-----LKYK--YYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ++|||||+|.||.++++.++..|  .+|++||++.+..     .+..  ...+++++++++|+|++++|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4799999986532     1221  2346778899999999999943 344444 4


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC----------CCcccCCCceEEccCCCC
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV----------PEELFGLENVVLMPHVGS  282 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~----------~~~L~~~pnv~lTPH~a~  282 (313)
                      +..+.++++.+++|++..+....+.+.+.+....++     +...-|..          ...|++-.+++++|+-..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            555667889999999986644455666665442222     22223321          125788888999997543

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.53  E-value=1.4e-07  Score=86.05  Aligned_cols=90  Identities=20%  Similarity=0.291  Sum_probs=76.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+.||.+.|.|||.+|+..|+.|++||.+|++-...+-..     ++++ ...++|++++.|+++.+..    .+++|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtTG----c~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTTG----CKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEccC----CcchhhH
Confidence            3789999999999999999999999999999987665322     2333 4579999999999998765    7789999


Q ss_pred             HHHhccCCCcEEEEcCCCcc
Q 021388          216 EVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~  235 (313)
                      +.|.+||.++++-|+|.-.+
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHhCcCCcEEeccccccc
Confidence            99999999999999987654

>PRK07680 late competence protein ComER; Validated

Probab=98.50  E-value=3.9e-07  Score=83.65  Aligned_cols=98  Identities=13%  Similarity=0.243  Sum_probs=73.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCcc-------ccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPNL-------KYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~~-------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      ++|||||+|+||+.+++.|...|.    +|.+|+|+++...       +.....+..+++.++|+|++++| ......++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            369999999999999999998883    6899999864321       23334577888899999999997 23344444


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                       +++.+.++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             4566678889999999855  47777777665

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.50  E-value=4.4e-06  Score=82.70  Aligned_cols=177  Identities=19%  Similarity=0.276  Sum_probs=106.8

Q ss_pred             CceEEEEeCCCCCCHHHHhhCC-CccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCC----------hHHHHHHHHHHHH
Q 021388           45 NIRAVVGNATAGADAELIDALP-KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVL----------TDDVADLAIGLML  113 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~~~L  113 (313)
                      ++|+|+.- .. .+.+.++.+. +--+|+...-..|.=-++++.++||++..--...          =.++|+.+     
T Consensus        64 ~adiIlkV-~~-P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA-----  136 (511)
T TIGR00561        64 QSDIILKV-NA-PSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA-----  136 (511)
T ss_pred             cCCEEEEe-CC-CCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH-----
Confidence            56877742 22 3455577765 4456666555554334677888999887632111          12344433     


Q ss_pred             HHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc---
Q 021388          114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY---  185 (313)
Q Consensus       114 ~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~---  185 (313)
                       -+|-+.+..+..  |++..+..-......+.++.|+|.|.+|...++.++.+|++|.++|++....     .+...   
T Consensus       137 -Gy~Avi~Aa~~l--gr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v  213 (511)
T TIGR00561       137 -GYRAIIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLEL  213 (511)
T ss_pred             -HHHHHHHHHHHh--hhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEec
Confidence             222221111111  1111100001114567899999999999999999999999999999876421     11110   


Q ss_pred             --------------CCC----------HHHHhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          186 --------------YPS----------VVELASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       186 --------------~~~----------l~e~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                                    ..+          +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||++-
T Consensus       214 ~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       214 DFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             cccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence                          001          345578899998887  3322 335788999999999999999974

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.50  E-value=2.1e-07  Score=78.47  Aligned_cols=87  Identities=20%  Similarity=0.317  Sum_probs=64.1

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-------------c------ccccCCCHHHHhhcCCEEEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-------------L------KYKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +|+|+|.|++|.++|..|...|.+|..|.|+++..             .      ......+++++++++|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999875410             0      0123468999999999999999944


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      . .+.+ -++....++++..+|++..|=
T Consensus        81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 A-HREV-LEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             G-HHHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred             H-HHHH-HHHHhhccCCCCEEEEecCCc
Confidence            3 2333 366777788999999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.48  E-value=8.9e-07  Score=81.57  Aligned_cols=102  Identities=17%  Similarity=0.306  Sum_probs=74.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCc-------c-ccccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPN-------L-KYKYYPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~-------~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      .+|+|||+|+||..+++.+...|    .+|.+|+++....       . ......+..+++.++|+|++++|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            47999999999999999999887    6899998864321       1 112245777889999999999992 334433


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      + .+....++++..+|.+.-|  +..+.|.+.+...++
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v  115 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV  115 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence            3 4455567788899999888  677788887754333

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.47  E-value=4.6e-07  Score=82.47  Aligned_cols=97  Identities=14%  Similarity=0.215  Sum_probs=72.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCC---EEEecCCCCCcc-------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCP---INYYSRTEKPNL-------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~---V~~~~~~~~~~~-------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +|||||+|+||+++++.|...|..   +.+++|+.+...       +.....+.+++++++|+|++++| ......++. 
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~-   79 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR-   79 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH-
Confidence            799999999999999999987754   578888765321       23345678888999999999999 344444442 


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      + + .++++.++|.+.  .-+..+.|.+.+..+
T Consensus        80 ~-l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A-L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             H-h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            2 2 257889999977  347888888888654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.46  E-value=7.3e-07  Score=82.07  Aligned_cols=80  Identities=18%  Similarity=0.355  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +..+.|+++.|||.|. +|+.+|..|...|++|++++++.         .++.+.+++||+|+.+++.    .+++..+.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~  219 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV  219 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH
Confidence            3469999999999999 99999999999999999887642         2688999999999999984    34677754


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         +|+|+++||+|--.
T Consensus       220 ---vk~gavVIDvGi~~  233 (286)
T PRK14175        220 ---VKEGAVIIDVGNTP  233 (286)
T ss_pred             ---cCCCcEEEEcCCCc
Confidence               68999999999754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.45  E-value=3.1e-07  Score=75.51  Aligned_cols=93  Identities=24%  Similarity=0.280  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccc-----------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLK-----------YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~-----------~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++.|+++.|||.|.+|+.++..|...|++ |++++|+.++...           .....++.+.+.++|+|+.+.|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999998 9999998753211           11244566788999999999986533


Q ss_pred             hhcccCHHHHhccCCCc-EEEEcCCCccc
Q 021388          209 TRHIINREVIDALGPKG-VLINIGRGPHV  236 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga-~lIn~~rg~~v  236 (313)
                         .+.++.++..++.. +++|.+...-+
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i  114 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPRDI  114 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCCCC
Confidence               67788877665543 88888654333

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.44  E-value=1.9e-07  Score=75.93  Aligned_cols=87  Identities=18%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEE-ecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINY-YSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~-~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ...+|||||.|++|..+++.|...|+.|.. |+|+.....      +.....+++++++++|++++++|++. ... +-+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~-va~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAE-VAE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHH-HHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHH-HHH
Confidence            456999999999999999999999999865 567653211      12234567889999999999999763 222 234


Q ss_pred             HHHhc--cCCCcEEEEcC
Q 021388          216 EVIDA--LGPKGVLINIG  231 (313)
Q Consensus       216 ~~l~~--mk~ga~lIn~~  231 (313)
                      ++...  .++|.+++-+|
T Consensus        87 ~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHCC--S-TT-EEEES-
T ss_pred             HHHHhccCCCCcEEEECC
Confidence            44444  68999999885

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.41  E-value=6.8e-07  Score=77.53  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aDvV  199 (313)
                      ++|+|||+|.+|..+|..+...|++|+++|.+++..            .+             .....+.++.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            589999999999999999999999999999876420            01             11235677889999999


Q ss_pred             EEecCCChhhhccc--------CHHHHhccCCCcEEEEcCCCccccHHHHH-HHHHhCCeeEEEec-CCCCCCCCCC---
Q 021388          200 VVACPLTEETRHII--------NREVIDALGPKGVLINIGRGPHVDERELV-SALVEGRLGGAGLD-VFENEPHVPE---  266 (313)
Q Consensus       200 ~~~lp~~~~t~~li--------~~~~l~~mk~ga~lIn~~rg~~vd~~al~-~al~~~~l~ga~lD-V~~~Ep~~~~---  266 (313)
                      ++|+|......+..        -+...+.++++.++|.-|+-.+=..+.+. ..|++....+.-++ +|.+|-+.+.   
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            99998443332221        24567788999999999999987777444 44444332110111 2566665542   


Q ss_pred             -cccCCCceEE
Q 021388          267 -ELFGLENVVL  276 (313)
Q Consensus       267 -~L~~~pnv~l  276 (313)
                       .+...|+|++
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence             4778888874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.38  E-value=1.3e-06  Score=76.31  Aligned_cols=86  Identities=26%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--------cccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--------YKYYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      ++++|+|.|+||..+|+++...|++|.+-+++......        .....+.++..+.+|+|++++|.... .. +.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~-v~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PD-VLAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-Hh-HHHH
Confidence            58999999999999999999999999988665543211        11234678889999999999996543 22 2366


Q ss_pred             HHhccCCCcEEEEcCCC
Q 021388          217 VIDALGPKGVLINIGRG  233 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg  233 (313)
                      +...+. |.++||+.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            666665 8999998764

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.35  E-value=1.8e-06  Score=81.81  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCC----------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCC
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKP----------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK  224 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g  224 (313)
                      -|..+|.+|...|++|++||++...          ..+.....+..++++++|+|++++|....++.++ .+....+++|
T Consensus        31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g  109 (342)
T PRK12557         31 GGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPEN  109 (342)
T ss_pred             CHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCC
Confidence            3789999999999999999997641          1233445678888999999999999665567776 5788889999


Q ss_pred             cEEEEcCCCccccH-HHHHHHHH
Q 021388          225 GVLINIGRGPHVDE-RELVSALV  246 (313)
Q Consensus       225 a~lIn~~rg~~vd~-~al~~al~  246 (313)
                      +++||++.++.... +.+.+.+.
T Consensus       110 ~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        110 AVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             CEEEEecCCCHHHHHHHHHHHhc
Confidence            99999999987766 56666664

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.35  E-value=3.6e-07  Score=81.00  Aligned_cols=129  Identities=12%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH--HhCCCCEE-EecCC
Q 021388          100 LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA--EAFSCPIN-YYSRT  176 (313)
Q Consensus       100 ~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l--~~~G~~V~-~~~~~  176 (313)
                      .+...++|.+..++...|++.         .|.          ..++++|||+|.+|+.+++.+  ...|+++. ++|++
T Consensus        59 ~G~~~~gy~v~~l~~~~~~~l---------~~~----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         59 FGKRGVGYNVEELLEFIEKIL---------GLD----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             cCCCCCCeeHHHHHHHHHHHh---------CCC----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            334556799999999988875         111          235899999999999999863  36788876 46765


Q ss_pred             CCCcc----cc--ccCCCHHHHhhc--CCEEEEecCCChh---hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388          177 EKPNL----KY--KYYPSVVELASN--CHILVVACPLTEE---TRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL  245 (313)
Q Consensus       177 ~~~~~----~~--~~~~~l~e~~~~--aDvV~~~lp~~~~---t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al  245 (313)
                      +....    +.  ....++.+++++  .|.+++++|....   ...+.......-|...++.+|+.+|.+|+.++|..+|
T Consensus       120 ~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l  199 (213)
T PRK05472        120 PEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVEL  199 (213)
T ss_pred             hhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHH
Confidence            43221    11  123457777754  9999999997765   2223333344556778899999999999999999998


Q ss_pred             Hh
Q 021388          246 VE  247 (313)
Q Consensus       246 ~~  247 (313)
                      ..
T Consensus       200 ~~  201 (213)
T PRK05472        200 QT  201 (213)
T ss_pred             HH
Confidence            74

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.34  E-value=1.1e-06  Score=80.37  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      -|.||+|+|||||+-|++=|.+|+..|.+|++--|....      ..|+. ..+.+|++++||+|++.+|+..+ ..++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence            489999999999999999999999999998876554432      22333 45799999999999999996544 44666


Q ss_pred             HHHHhccCCCcEE
Q 021388          215 REVIDALGPKGVL  227 (313)
Q Consensus       215 ~~~l~~mk~ga~l  227 (313)
                      ++.-..||+|+.+
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            7888899998854

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.34  E-value=3.2e-06  Score=63.93  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=56.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhC-CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAF-SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ..+.+++++|+|.|.+|+.++..+... +.+|.+|||                     |+++.+.+.    .+.+.++..
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~   73 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT   73 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence            347889999999999999999999988 567889988                     999998874    344556568


Q ss_pred             hccCCCcEEEEcC
Q 021388          219 DALGPKGVLINIG  231 (313)
Q Consensus       219 ~~mk~ga~lIn~~  231 (313)
                      ..+++++++++++
T Consensus        74 ~~~~~~~~v~~~a   86 (86)
T cd05191          74 AKINEGAVVIDLA   86 (86)
T ss_pred             HhcCCCCEEEecC
Confidence            8899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=1e-05  Score=74.40  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-| .+|+++|..|...|+.|.++....         .++.+.+++||+|+.+++    ..+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------~~l~~~~~~ADIvV~AvG----~p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------KDLSFYTQNADIVCVGVG----KPDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------HHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            457999999999999 899999999999999999875422         257889999999999997    345677766


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                      +   |+|+++||+|...+
T Consensus       219 v---k~GavVIDvGi~~~  233 (285)
T PRK14191        219 V---KKGAVVVDIGINRL  233 (285)
T ss_pred             c---CCCcEEEEeecccc
Confidence            5   89999999996553

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.28  E-value=3.3e-06  Score=77.03  Aligned_cols=99  Identities=31%  Similarity=0.479  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      +.++|||||+|+||+++++.+...|.    ++++++++.+.. +.....+..+++.++|+|++++| ..+...++ .+..
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl-~~i~   78 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL-LEIK   78 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-HHHH
Confidence            34689999999999999999987662    488999876542 22334567788889999999998 23444444 4444


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ..++++ .+|.+.-|  +..+.+.+.+..
T Consensus        79 ~~l~~~-~iIS~~aG--i~~~~l~~~~~~  104 (260)
T PTZ00431         79 PYLGSK-LLISICGG--LNLKTLEEMVGV  104 (260)
T ss_pred             hhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence            555554 45555555  446666665543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.27  E-value=2.3e-06  Score=78.17  Aligned_cols=96  Identities=19%  Similarity=0.200  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC---CCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS---CPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G---~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+++...      +.....+.++++.++|+|++++|.. ....++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence            57999999999999999999888   68999999865321      2334457788889999999999832 233333 3


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      +....+  +.++|.+.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            333333  46777776653  5666776664

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.26  E-value=1e-05  Score=76.73  Aligned_cols=138  Identities=21%  Similarity=0.314  Sum_probs=97.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV  199 (313)
                      .+|||||||-||.++|..+...|++|+++|.++....                        + .....+.+ .++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence            7999999999999999999999999999998765210                        0 11123333 35599999


Q ss_pred             EEecCCChhhh-c------cc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEecC---CCCCCCCC
Q 021388          200 VVACPLTEETR-H------II--NREVIDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLDV---FENEPHVP  265 (313)
Q Consensus       200 ~~~lp~~~~t~-~------li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lDV---~~~Ep~~~  265 (313)
                      ++|+|. |-+. +      +.  .+...+.||+|.++|==|+-.+=.++.++..+.+.  .+. ..-|.   |.+|-..+
T Consensus        89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            999983 3222 1      11  13466789999999999999999999999988774  343 34565   56665433


Q ss_pred             -C---cccCCCceEEccCCCCCcHHHHHH
Q 021388          266 -E---ELFGLENVVLMPHVGSGTVETRKT  290 (313)
Q Consensus       266 -~---~L~~~pnv~lTPH~a~~t~~~~~~  290 (313)
                       +   .+.+.|+|     +||.|+.+.+.
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~~~e~  190 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPKCAEL  190 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHHHHHH
Confidence             2   46677887     47777654443

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.26  E-value=6.5e-06  Score=75.67  Aligned_cols=80  Identities=18%  Similarity=0.292  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||.|. +|+++|..|...|++|+++.+..         .++.+.+++||+|+.+++-.    +++..  
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvi~avG~p----~~v~~--  218 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------KNLRHHVRNADLLVVAVGKP----GFIPG--  218 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------CCHHHHHhhCCEEEEcCCCc----ccccH--
Confidence            3469999999999999 99999999999999999887542         36889999999999999522    35655  


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                       ..+|+|+++||+|--.
T Consensus       219 -~~vk~gavVIDvGin~  234 (285)
T PRK10792        219 -EWIKPGAIVIDVGINR  234 (285)
T ss_pred             -HHcCCCcEEEEccccc
Confidence             4568999999999544

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.26  E-value=2e-06  Score=76.41  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------cc---ccCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------KY---KYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+||| .|+||+.+++.|...|++|.+++|+++...             +.   ....+..+.++++|+|++++|...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            4799997 999999999999999999999998764321             11   012356778899999999999432


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          208 ETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                       ...++ +++...++ +.++|++.-|--.
T Consensus        81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        81 -VLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             -HHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence             33333 33333444 5899999877433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.26  E-value=9.2e-06  Score=70.43  Aligned_cols=89  Identities=15%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             cccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCc------cccccC--CC----HHHHhhcCCEEEEecC
Q 021388          138 LTTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYY--PS----VVELASNCHILVVACP  204 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~--~~----l~e~~~~aDvV~~~lp  204 (313)
                      .+.++.||++.|||-+. +|+++|..|...|++|+.+|.+.-..      ..-...  .+    +.+.+++||+|+.+++
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence            46789999999999986 69999999999999999996432110      000011  12    7789999999999998


Q ss_pred             CChhhhcc-cCHHHHhccCCCcEEEEcCCC
Q 021388          205 LTEETRHI-INREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       205 ~~~~t~~l-i~~~~l~~mk~ga~lIn~~rg  233 (313)
                      -    .++ +..+.   .|+|+++||+|--
T Consensus       136 ~----~~~~i~~d~---ik~GavVIDVGi~  158 (197)
T cd01079         136 S----PNYKVPTEL---LKDGAICINFASI  158 (197)
T ss_pred             C----CCCccCHHH---cCCCcEEEEcCCC
Confidence            3    345 66655   5799999999843

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.25  E-value=4.8e-06  Score=70.41  Aligned_cols=81  Identities=19%  Similarity=0.304  Sum_probs=59.0

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|++++..|...|+.|..++...         .++++.+++||+|+.+++    ..++|..+ 
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~-   96 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKAD-   96 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GG-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----cccccccc-
Confidence            4469999999999995 99999999999999999887543         368899999999999997    34556554 


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                        .+|+|+++||+|.-..
T Consensus        97 --~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   97 --WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             --GS-TTEEEEE--CEEE
T ss_pred             --cccCCcEEEecCCccc
Confidence              4689999999998765

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.24  E-value=6e-06  Score=75.30  Aligned_cols=99  Identities=21%  Similarity=0.230  Sum_probs=76.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++|||||+|+||++|+..|...|    .+|++.+|+.+...      +.....+.+++..++|+|++++.  |+.-    
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~~----   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQDL----   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHhH----
Confidence            58999999999999999999888    47999999876432      22235667789999999999996  4322    


Q ss_pred             HHHHhccC---CCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALG---PKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk---~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+.++.++   ++.++|.+.-|  +..+.|.+++.+.++.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vv  113 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVV  113 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceE
Confidence            45555565   78999999988  7888888888744443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.23  E-value=4.8e-06  Score=71.88  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=69.0

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhcC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASNC  196 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~a  196 (313)
                      +|+|||.|.||+.+|..+...|++|..||++++...                +             .....+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            689999999999999999999999999999775210                0             11246788877 99


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      |+|+=++|...+.+.-+-+++-+.++++++|...+.+  .....|.+.+.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~  127 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS  127 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC
Confidence            9999999988887776667777788899988554433  44556666653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.22  E-value=8.9e-06  Score=73.19  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCC---CC-EEEecCC-CCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFS---CP-INYYSRT-EKPN------LKYKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G---~~-V~~~~~~-~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ..++|||||.|+||+.+++.+...|   .+ +++++++ ++..      .+.....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            3578999999999999999998765   33 6677764 3221      12334567888999999999999933 2233


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ++ ++....++ +.++|.++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            33 33333344 6788998877  5666777776544

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.19  E-value=5.5e-06  Score=75.95  Aligned_cols=80  Identities=16%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.|+++.|+|.+ ..|+++|..|...|++|..+.+..         .++.+.+++||+|+.+++-.    +++.++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence            346999999999999 899999999999999998877542         36889999999999999632    5787777


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                      +   |+|+++||+|-..
T Consensus       214 v---k~GavVIDVgi~~  227 (279)
T PRK14178        214 V---KPGATVIDVGINQ  227 (279)
T ss_pred             c---CCCcEEEEeeccc
Confidence            4   9999999998654

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.19  E-value=2e-05  Score=65.21  Aligned_cols=80  Identities=15%  Similarity=0.236  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|+|-+. .|+.++..|...|++|...++..         .++++.+++||+|+.+++..    +++..+.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            4579999999999875 78999999999999999887543         26889999999999999844    4676655


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         +|||++++|++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               68999999998765

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.19  E-value=1.9e-05  Score=77.94  Aligned_cols=130  Identities=14%  Similarity=0.138  Sum_probs=91.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcc------------c------------cccCCCHHHHhhcCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNL------------K------------YKYYPSVVELASNCHI  198 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~------------~------------~~~~~~l~e~~~~aDv  198 (313)
                      ++|+|||+|.+|..+|..|...  |++|+++|.+++...            +            .....+..+.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5899999999999999999966  588999997664210            0            1122456778899999


Q ss_pred             EEEecCCChhh-----------hccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec---CCCCCC
Q 021388          199 LVVACPLTEET-----------RHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD---VFENEP  262 (313)
Q Consensus       199 V~~~lp~~~~t-----------~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD---V~~~Ep  262 (313)
                      +++|+|.....           ..+.  -++..+.+++|.++|.-|+..+=..+.+...+.+.. .|  .|   +|.+|-
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PEr  158 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPEF  158 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCCc
Confidence            99999733211           1111  245666789999999999988888888888887631 11  22   256776


Q ss_pred             CCC----CcccCCCceEEc
Q 021388          263 HVP----EELFGLENVVLM  277 (313)
Q Consensus       263 ~~~----~~L~~~pnv~lT  277 (313)
                      +.+    ..+...|+|++-
T Consensus       159 l~~G~a~~d~~~p~riViG  177 (473)
T PLN02353        159 LAEGTAIEDLFKPDRVLIG  177 (473)
T ss_pred             cCCCCcccccCCCCEEEEc
Confidence            654    257778888753

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.18  E-value=8.1e-06  Score=75.09  Aligned_cols=79  Identities=19%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||.|. +|+++|..|...|++|.++....         .++.+..++||+|+.++.-    .+++..+ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvv~AvG~----p~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------DDLKKYTLDADILVVATGV----KHLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------CCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence            4479999999999999 99999999999999999887432         2688999999999998763    2456665 


Q ss_pred             HhccCCCcEEEEcCCC
Q 021388          218 IDALGPKGVLINIGRG  233 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg  233 (313)
                        .+|+|+++||+|--
T Consensus       225 --~vk~gavVIDvGin  238 (287)
T PRK14176        225 --MVKEGAVIFDVGIT  238 (287)
T ss_pred             --HcCCCcEEEEeccc
Confidence              57899999999864

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.17  E-value=1.8e-05  Score=73.50  Aligned_cols=135  Identities=14%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHHHH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELA-SNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      -.+|||||+|+||+-.|+.+...|+.|.+.||+.-..    .|...++.+.+++ ++.|+|++|+.. ..+..++.---+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence            3689999999999999999999999999999976432    2344566777766 569999999863 234444433345


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCC
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVG  281 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a  281 (313)
                      +.+|.|++++++-.-..-..+++.+-|-+. .|. ..=-.|.++. .++....+|=|+.--.++
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPks-vnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPKS-VNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCCc-CCCccccCceEEEEeecc
Confidence            668999999999888777777777766432 232 2222333331 233456677766655444

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.17  E-value=3.3e-05  Score=69.14  Aligned_cols=149  Identities=14%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCC---EEEecCCC----CCcc-----------cc--ccC-CCHHHHhhcCCE
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP---INYYSRTE----KPNL-----------KY--KYY-PSVVELASNCHI  198 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~---V~~~~~~~----~~~~-----------~~--~~~-~~l~e~~~~aDv  198 (313)
                      .++.++++.|+|.|.+|+.+|..|...|++   ++.+||+.    +...           ..  ... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            358889999999999999999999999985   99999983    2210           00  011 257778889999


Q ss_pred             EEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC-eeEEEecCCCCCCCCCCcccCCCceEEc
Q 021388          199 LVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGR-LGGAGLDVFENEPHVPEELFGLENVVLM  277 (313)
Q Consensus       199 V~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~-l~ga~lDV~~~Ep~~~~~L~~~pnv~lT  277 (313)
                      |+.+.|     .++++.+.++.|+++.++.+.+.  ...+.-+.++.+.|- +.   .|-.  +.    -..|..|+++-
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~---a~G~--~~----~~~Q~nn~~~f  164 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIV---ATGR--SD----FPNQVNNVLGF  164 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEE---EeCC--CC----Cccccceeeec
Confidence            999886     35678889999999999998883  334444444444433 22   2221  11    23478899999


Q ss_pred             cCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021388          278 PHVGSGTVE-----TRKTMADLVLGNLEAHFL  304 (313)
Q Consensus       278 PH~a~~t~~-----~~~~~~~~~~~nl~~~~~  304 (313)
                      |=++-..-.     .-+.|...+++-|.++..
T Consensus       165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         165 PGIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            977643221     124555555555555543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=1e-05  Score=74.75  Aligned_cols=80  Identities=18%  Similarity=0.296  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||.|. .|++++..|...|++|.++++.         ..++.+.++++|+|+.+++. +   +.+..+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG~-~---~~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVGK-P---ELIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccCC-C---CcCCHHH
Confidence            4468999999999998 9999999999999999998873         23577888999999999962 2   2566544


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         +|+|++++|++-..
T Consensus       221 ---lk~gavViDvg~n~  234 (283)
T PRK14192        221 ---IKQGAVVVDAGFHP  234 (283)
T ss_pred             ---cCCCCEEEEEEEee
Confidence               78999999998654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.14  E-value=7.4e-06  Score=75.05  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=71.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCC-EEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCP-INYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ++|||||+|.||+.+++.+...  +++ +.++|++++...      +...+.++++++.++|+|+.|.|..  ...   +
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence            4799999999999999998865  466 457888764321      2234578999889999999998732  221   1


Q ss_pred             HHHhccCCCcEEEEcCCCccccH---HHHHHHHHhCCee
Q 021388          216 EVIDALGPKGVLINIGRGPHVDE---RELVSALVEGRLG  251 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~---~al~~al~~~~l~  251 (313)
                      -....++.|.-++..+.|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            22334556766777888877764   4677777776644

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.14  E-value=1.8e-05  Score=78.64  Aligned_cols=178  Identities=17%  Similarity=0.270  Sum_probs=105.3

Q ss_pred             CceEEEEeCCCCCCHHHHhhCCC-ccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCC----------hHHHHHHHHHHHH
Q 021388           45 NIRAVVGNATAGADAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVL----------TDDVADLAIGLML  113 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~~~L  113 (313)
                      ++|+|+.-. . .+.+.++.++. --+|+......|.=-++++.++||.+..---..          =.++|+.+     
T Consensus        65 ~~diilkV~-~-P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA-----  137 (509)
T PRK09424         65 QSDIILKVN-A-PSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA-----  137 (509)
T ss_pred             cCCEEEEeC-C-CCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh-----
Confidence            578887522 2 34555777654 456666666555444677888998877632111          12333332     


Q ss_pred             HHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccC--
Q 021388          114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYY--  186 (313)
Q Consensus       114 ~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~--  186 (313)
                       -+|-+.+..+.  -++.............+.++.|+|.|.+|...++.++.+|++|.++|++++..     .|....  
T Consensus       138 -Gy~Av~~aa~~--~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i  214 (509)
T PRK09424        138 -GYRAVIEAAHE--FGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL  214 (509)
T ss_pred             -HHHHHHHHHHH--hcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence             12222211111  11111110001113579999999999999999999999999999999876531     122100  


Q ss_pred             -----------------CCH--------HHHhhcCCEEEEecCCChh-hhcccCHHHHhccCCCcEEEEcCC
Q 021388          187 -----------------PSV--------VELASNCHILVVACPLTEE-TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       187 -----------------~~l--------~e~~~~aDvV~~~lp~~~~-t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                                       .+.        .+.++.+|+|+.+...... ...++.++.++.||+|+++|++|-
T Consensus       215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                             010        1112569999998854221 234556889999999999999974

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.14  E-value=9.8e-06  Score=76.57  Aligned_cols=103  Identities=15%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccc-----------------cCCCHHHHhhcCCEEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYK-----------------YYPSVVELASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~-----------------~~~~l~e~~~~aDvV~~~l  203 (313)
                      ++|+|||.|.||..+|..|...|++|.+++|++...    .+..                 ...+. +.+..+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            579999999999999999999999999999864210    1110                 12233 5678999999999


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +.. +...++ ++..+.++++.+++.+.-| +...+.+.+.+.+.++.
T Consensus        82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            854 344444 5566778899999888654 44556677777665543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.13  E-value=2.7e-06  Score=72.55  Aligned_cols=91  Identities=15%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c---cc-----------------------cCCCH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K---YK-----------------------YYPSV  189 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~---~~-----------------------~~~~l  189 (313)
                      .+...++.|+|.|+.|+..++.++++|++|..+|.......     .   ..                       ....+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            46778999999999999999999999999999987653110     0   00                       01236


Q ss_pred             HHHhhcCCEEEEec-CCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          190 VELASNCHILVVAC-PLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       190 ~e~~~~aDvV~~~l-p~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .+.++.+|+|+.++ -.......++.++.++.||+|.+++|++
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            67889999988644 4455677799999999999999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=6e-05  Score=69.42  Aligned_cols=134  Identities=19%  Similarity=0.179  Sum_probs=88.8

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++++.+++||+|+.++.    ..+++..+.
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVG----RPHLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence            4579999999999875 79999999999999998876432         268899999999999997    335777765


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG  297 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~  297 (313)
                         .|+|+++||+|.-.+.+        ++|+. ...=||- .+-      .+... .+||--||--.-+..-+.+..++
T Consensus       217 ---vk~GavVIDVGin~~~~--------~~gk~-~l~GDVd-~~v------~~~a~-~iTPVPGGVGp~T~a~L~~N~~~  276 (287)
T PRK14173        217 ---VRPGAVVVDVGINRVGG--------NGGRD-ILTGDVH-PEV------AEVAG-ALTPVPGGVGPMTVAMLMANTVI  276 (287)
T ss_pred             ---cCCCCEEEEccCccccC--------CCCce-eeecccc-HhH------HhhCc-EEecCCCChhHHHHHHHHHHHHH
Confidence               48999999999766432        13441 0244553 111      11111 68897777554433333333333


Q ss_pred             HHHHHHcC
Q 021388          298 NLEAHFLN  305 (313)
Q Consensus       298 nl~~~~~g  305 (313)
                      -.++...|
T Consensus       277 a~~~~~~~  284 (287)
T PRK14173        277 AALRRRGG  284 (287)
T ss_pred             HHHHHccC
Confidence            33444444

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=2.2e-05  Score=72.26  Aligned_cols=114  Identities=21%  Similarity=0.297  Sum_probs=82.7

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+.+++||+|+.+++    ..+++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            4479999999999886 7999999999999999987642         2368899999999999996    345788776


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR  288 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~  288 (313)
                      +   |+|+++||+|.-.+.          +|++.   =||-. |     ...+.. -.+||.-||--.-+.
T Consensus       220 i---k~gavVIDvGi~~~~----------~gkl~---GDvd~-e-----~v~~~a-~~iTPVPGGVGpvT~  267 (284)
T PRK14190        220 V---KEGAVVIDVGVNRLE----------NGKLC---GDVDF-D-----NVKEKA-SYITPVPGGVGPMTI  267 (284)
T ss_pred             c---CCCCEEEEeeccccC----------CCCee---ccCcH-H-----HHhhhc-eEecCCCCCChHHHH
Confidence            5   899999999976532          34443   35521 1     111111 268998787665433

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.08  E-value=4.5e-06  Score=76.66  Aligned_cols=90  Identities=16%  Similarity=0.264  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccc------cCCCHHHHhhcCCEEEEec--CCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYK------YYPSVVELASNCHILVVAC--PLT  206 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~e~~~~aDvV~~~l--p~~  206 (313)
                      .+...++.|||.|.+|...|+.+.++|.+|...|++.++..      +.+      ....+++.+.++|+|+-++  |. 
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-  243 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-  243 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence            36677999999999999999999999999999998854321      111      1235788999999999876  43 


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcC
Q 021388          207 EETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ...-.++.++.+++||||+++||++
T Consensus       244 akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEEEE
Confidence            2455678899999999999999984

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=3e-05  Score=71.30  Aligned_cols=81  Identities=22%  Similarity=0.383  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+.+++||+|+.+++-    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----~~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATGL----AKFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            4579999999999986 69999999999999999876432         2588999999999999973    34676655


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                         .|+|+++||+|.-.+
T Consensus       219 ---vk~GavVIDvGin~~  233 (284)
T PRK14170        219 ---IKPGAIVIDVGMDRD  233 (284)
T ss_pred             ---cCCCCEEEEccCccc
Confidence               579999999997653

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=8.6e-05  Score=68.25  Aligned_cols=80  Identities=24%  Similarity=0.387  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+.+++||+|+.+++    -.+++..+.
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~p~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVG----VPHFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            4579999999999986 79999999999999998875432         258899999999999997    345677765


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         +|+|+++||+|--.
T Consensus       218 ---vk~GavVIDvGin~  231 (282)
T PRK14169        218 ---VKPGAVVIDVGISR  231 (282)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               57999999999654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.05  E-value=5.3e-06  Score=80.81  Aligned_cols=94  Identities=21%  Similarity=0.234  Sum_probs=69.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcc------ccc--cCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNL------KYK--YYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~------~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+.|++++|+|.|.||+.+++.|+..| .+|.+++|+.+...      +..  ...++.+.+..+|+|+.+++.   +..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            478899999999999999999999999 57999999865321      111  123566788899999999764   345


Q ss_pred             ccCHHHHhccC----CCcEEEEcCCCcccc
Q 021388          212 IINREVIDALG----PKGVLINIGRGPHVD  237 (313)
Q Consensus       212 li~~~~l~~mk----~ga~lIn~~rg~~vd  237 (313)
                      +++.+.++.+.    ...+++|.+...=+|
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            67777776652    235888887544344

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.03  E-value=3.6e-05  Score=71.25  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccc-----------ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKY-----------KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~-----------~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++|+|||.|.||..+|..|...|++|..++|+.+..     .+.           ....+..++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999999999999999854321     121           112345555 8899999999944 3


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +..++ +.+.+.+.+++.+|....| +-..+.+.+.+....+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            44443 4555667778888887776 33355666666655554

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=2.5e-05  Score=71.71  Aligned_cols=80  Identities=15%  Similarity=0.282  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-| .+|+++|..|...|+.|..+....         .++.+.+++||+|+.++.    ..+++..+.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------~~l~~~~~~ADIvV~AvG----kp~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------KDLKAHTKKADIVIVGVG----KPNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecC----cccccCHHH
Confidence            347999999999999 799999999999999998775422         258899999999999997    345676655


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       219 ---vk~gavvIDvGin~  232 (281)
T PRK14183        219 ---VKEGAIVIDIGINR  232 (281)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               57999999999544

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=4.1e-05  Score=70.48  Aligned_cols=80  Identities=21%  Similarity=0.372  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|++++..|...|+.|+.+....         .++.+.+++||+|+.++.-    .+++..+.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------~~L~~~~~~ADIvV~AvGk----p~~i~~~~  220 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------HNLSSITSKADIVVAAIGS----PLKLTAEY  220 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----CCccCHHH
Confidence            3469999999999986 79999999999999999876432         3688999999999999973    35777665


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       221 ---vk~GavVIDvGin~  234 (288)
T PRK14171        221 ---FNPESIVIDVGINR  234 (288)
T ss_pred             ---cCCCCEEEEeeccc
Confidence               57999999999543

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=0.00011  Score=67.55  Aligned_cols=112  Identities=17%  Similarity=0.330  Sum_probs=81.8

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHh--CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEA--FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +.++.||++.|||-+. +|+++|..|..  .|+.|+.+...         ..++.+.+++||+|+.+++-    .+++..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGk----p~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGV----AHLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCC----cCccCH
Confidence            4579999999999875 79999999987  78999887643         23688999999999999973    356777


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHH
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVET  287 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~  287 (313)
                      +.   +|+|+++||+|.-.+          .+|++.   =||- .+      ..+... .+||--||--.-+
T Consensus       220 ~~---ik~GavVIDvGin~~----------~~gkl~---GDvd-~~------v~~~a~-~iTPVPGGVGp~T  267 (284)
T PRK14193        220 DM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH-PD------VWEVAG-AVSPNPGGVGPMT  267 (284)
T ss_pred             HH---cCCCCEEEEcccccc----------CCCcEE---eecC-Hh------HHhhCC-EEeCCCCChhHHH
Confidence            65   579999999997653          245544   3654 11      111122 6899877766543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.01  E-value=2.4e-05  Score=72.57  Aligned_cols=103  Identities=16%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC-----cccc-------------ccCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-----NLKY-------------KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~-----~~~~-------------~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.||..+|..|...|++|..++| .+.     ..+.             ....+.++....+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999999999999998 321     1110             01234556668999999999954


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       ++..++ +...+.++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             333333 4455567788888877665 44466777777665544

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.2e-05  Score=71.09  Aligned_cols=80  Identities=18%  Similarity=0.319  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.++...         .++.+..++||+|+.+++    ..+++..+.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------~~l~~~~~~ADIvIsAvG----k~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------QNLPSIVRQADIIVGAVG----KPEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence            4579999999999986 79999999999999999887432         268899999999999997    345677655


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       221 ---ik~gavVIDvGin~  234 (284)
T PRK14177        221 ---ISEGAVLLDAGYNP  234 (284)
T ss_pred             ---cCCCCEEEEecCcc
Confidence               57999999999644

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.00  E-value=1.5e-05  Score=74.67  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------cccc--CCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KYKY--YPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~~~--~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      +.|++|+|||.|.||+.+++.++..|. +|.+++|+++...      +...  ..++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            689999999999999999999998764 6889999865321      1111  23466778899999999985543 222


Q ss_pred             cCHHHHhcc-CCCcEEEEcCCC
Q 021388          213 INREVIDAL-GPKGVLINIGRG  233 (313)
Q Consensus       213 i~~~~l~~m-k~ga~lIn~~rg  233 (313)
                      + +..++.. +++.++||.+..
T Consensus       255 ~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCC
Confidence            2 3233322 356788888753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.00  E-value=6.4e-05  Score=70.18  Aligned_cols=152  Identities=17%  Similarity=0.194  Sum_probs=117.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----------cccCCCHHHH---hhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------YKYYPSVVEL---ASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~  211 (313)
                      ..||+||++.||+.++-.....|+.|.+|+|+..+...          .....|++++   +++-.+|++.+-.......
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            46899999999999999999999999999998764221          1234577776   5678888888865555555


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHH
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT  290 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~  290 (313)
                      +| +++...|.+|-++||-+...--|+..-.+.|.+..+...+.-|...|--... |       -+.|   |.+.+++++
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-------SlMp---Gg~~~Awp~  155 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-------SLMP---GGSKEAWPH  155 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-------ccCC---CCChHHHHH
Confidence            55 7788999999999999999999999999999999999999999888864321 3       2334   567788888


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 021388          291 MADLVLGNLEAHFLNKP  307 (313)
Q Consensus       291 ~~~~~~~nl~~~~~g~~  307 (313)
                      +..++.+--...-.|+|
T Consensus       156 ik~ifq~iaakv~~~ep  172 (487)
T KOG2653|consen  156 IKDIFQKIAAKVSDGEP  172 (487)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            87776554333334555

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.99  E-value=2e-05  Score=73.57  Aligned_cols=94  Identities=20%  Similarity=0.337  Sum_probs=70.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC-------------------ccccccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-------------------NLKYKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~-------------------~~~~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|||.|+.|.++|+.|...|++|..|.|+++.                   +.......++.++++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            58999999999999999999999999999875431                   01123457899999999999999993


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCCCccccHHH
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      . ..+.++ +++-..++++..+|+++.|=-.+.-.
T Consensus        82 ~-~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~  114 (329)
T COG0240          82 Q-ALREVL-RQLKPLLLKDAIIVSATKGLEPETGR  114 (329)
T ss_pred             H-HHHHHH-HHHhhhccCCCeEEEEeccccCCCcc
Confidence            2 233333 33345678999999999875544333

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=5.1e-05  Score=69.59  Aligned_cols=80  Identities=23%  Similarity=0.358  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|++++..|...|+.|+.+....         .++.+..++||+|+.+++    -.+++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~  219 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------KNLKEVCKKADILVVAIG----RPKFIDEEY  219 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence            3479999999999886 79999999999999999887432         268899999999999997    335677765


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       220 ---ik~gavVIDvGin~  233 (278)
T PRK14172        220 ---VKEGAIVIDVGTSS  233 (278)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               58999999998654

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.6e-05  Score=71.27  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=83.5

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|++|+.+....         .++++.+++||+|+.+++-    .+++..+.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT---------QDLASITREADILVAAAGR----PNLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            4579999999999986 79999999999999998875432         2688999999999999983    35677655


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR  288 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~  288 (313)
                         .|+|+++||+|--.+.|..      ++|++   .=||-..      ...+.. -.+||--||--.-+.
T Consensus       220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~------~v~~~a-~~iTPVPGGVGp~T~  271 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFE------EVEPVA-AAITPVPGGVGPMTV  271 (297)
T ss_pred             ---cCCCCEEEEeccccccccc------cCCce---eCCccHH------HHHhhc-eEecCCCCCchHHHH
Confidence               5799999999976543221      13544   3355311      111111 268999787665433

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=3.7e-05  Score=70.67  Aligned_cols=80  Identities=13%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+..++||+|+.++.    -.+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvG----kp~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAG----CVNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence            4579999999999986 79999999999999999876532         358899999999999997    345677765


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGin~  232 (282)
T PRK14166        219 ---VKEGVIVVDVGINR  232 (282)
T ss_pred             ---cCCCCEEEEecccc
Confidence               57999999999544

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.96  E-value=3e-05  Score=73.54  Aligned_cols=89  Identities=24%  Similarity=0.291  Sum_probs=65.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhCC--------CCEEEecCCC-----C----------Cc---cc------cccCCCHHHHh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFS--------CPINYYSRTE-----K----------PN---LK------YKYYPSVVELA  193 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G--------~~V~~~~~~~-----~----------~~---~~------~~~~~~l~e~~  193 (313)
                      +|+|||.|++|.++|..|...|        .+|..|.|.+     .          ..   .+      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            4899999999999999998767        8999997732     1          00   01      11346789999


Q ss_pred             hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      +.||+|++++|.. ..+.+ -+++-..++++..+|+++.|=-.
T Consensus        81 ~~ADiIIlAVPs~-~i~~v-l~~l~~~l~~~~~iVs~tKGie~  121 (342)
T TIGR03376        81 KGADILVFVIPHQ-FLEGI-CKQLKGHVKPNARAISCIKGLEV  121 (342)
T ss_pred             hcCCEEEEECChH-HHHHH-HHHHHhhcCCCCEEEEEeCCccc
Confidence            9999999999932 23333 35556678889999999987433

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=4.1e-05  Score=70.70  Aligned_cols=80  Identities=18%  Similarity=0.321  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+.+++||+|+.+++    ..+++..+.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvG----kp~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVG----IPNFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            4579999999999986 79999999999999999877532         368899999999999997    335677765


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       222 ---ik~gaiVIDVGin~  235 (294)
T PRK14187        222 ---IKKGAIVIDVGINS  235 (294)
T ss_pred             ---cCCCCEEEEecccc
Confidence               47999999998654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.95  E-value=3.7e-05  Score=72.14  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CC-CCEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FS-CPINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      ..++++|||.|.+|+.+++.+.. ++ .+|.+|+|++++..         +  .....+.++.+++||+|+++.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46789999999999999986653 55 46999999876421         1  223467888999999998888754   


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHH
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVS  243 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~  243 (313)
                      ..++..   +.+++|+. ||+.-........+-.
T Consensus       201 ~pvl~~---~~l~~g~~-i~~ig~~~~~~~El~~  230 (314)
T PRK06141        201 EPLVRG---EWLKPGTH-LDLVGNFTPDMRECDD  230 (314)
T ss_pred             CCEecH---HHcCCCCE-EEeeCCCCcccccCCH
Confidence            455655   34689995 5543333333333333

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=4.2e-05  Score=70.29  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=65.9

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|++|+.+....         .++.+..++||+|+.+++    ..+++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvG----kp~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVG----KPNFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence            4579999999999886 79999999999999999886432         268889999999999997    335677655


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       220 ---vk~gavVIDvGin~  233 (282)
T PRK14180        220 ---VKEGAVVIDVGINH  233 (282)
T ss_pred             ---cCCCcEEEEecccc
Confidence               57999999998543

>PLN00203 glutamyl-tRNA reductase

Probab=97.94  E-value=1.5e-05  Score=79.48  Aligned_cols=90  Identities=18%  Similarity=0.318  Sum_probs=66.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc-------cc----ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL-------KY----KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+.+...       +.    ....++.+.+.++|+|+.++|.   
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s---  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS---  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence            3778999999999999999999999998 5999999865321       11    1124566788999999998763   


Q ss_pred             hhcccCHHHHhccCCC-------cEEEEcCCC
Q 021388          209 TRHIINREVIDALGPK-------GVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~g-------a~lIn~~rg  233 (313)
                      ...++..+.++.++++       .+|||.+-.
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            3457778888776432       367777644

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.94  E-value=4.3e-05  Score=70.72  Aligned_cols=134  Identities=16%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|++|+.+....         .++++.+++||+|+.++.-    .+++..+.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T---------~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT---------PDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            4579999999999986 69999999999999999886432         3688999999999999863    36777665


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVL  296 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~  296 (313)
                         .|+|+++||+|--.+-+.     ...+| +   ..=||-..+-      .+. --.+||--||--.-+..-+.+..+
T Consensus       229 ---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v------~~~-a~~iTPVPGGVGp~T~a~L~~N~v  290 (299)
T PLN02516        229 ---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV------SKV-AGWITPVPGGVGPMTVAMLLKNTV  290 (299)
T ss_pred             ---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh------hhh-ceEecCCCCCchHHHHHHHHHHHH
Confidence               579999999996542221     11123 3   3446631111      011 125899777766544444444444


Q ss_pred             HHHHHHH
Q 021388          297 GNLEAHF  303 (313)
Q Consensus       297 ~nl~~~~  303 (313)
                      +--++++
T Consensus       291 ~a~~~~~  297 (299)
T PLN02516        291 DGAKRVF  297 (299)
T ss_pred             HHHHHHh
Confidence            3334443

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.94  E-value=3.7e-05  Score=73.52  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCC-------CCEEEecCCCCC------------------ccc------cccCCCHHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFS-------CPINYYSRTEKP------------------NLK------YKYYPSVVE  191 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G-------~~V~~~~~~~~~------------------~~~------~~~~~~l~e  191 (313)
                      ..++|+|||.|++|.++|..|...|       .+|..|.|++..                  ..+      .....++++
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            3468999999999999999998765       789888776631                  001      122467888


Q ss_pred             HhhcCCEEEEecCCChhhhcccCHHHHh--ccCCCcEEEEcCCCcccc
Q 021388          192 LASNCHILVVACPLTEETRHIINREVID--ALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       192 ~~~~aDvV~~~lp~~~~t~~li~~~~l~--~mk~ga~lIn~~rg~~vd  237 (313)
                      +++.+|+|++++|.. ..+.++ +++-.  .+++++++|+++-|=-.+
T Consensus        90 av~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         90 AVEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            999999999999922 233332 33334  466678999998874433

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.92  E-value=4.7e-05  Score=71.90  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+.+++||+|+.+++    ..+++..+.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T---------~nl~~~~r~ADIVIsAvG----kp~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITREADIIISAVG----QPNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence            4469999999999986 79999999999999999876432         368899999999999997    345677765


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       293 ---vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 ---IKPGAVVIDVGINP  306 (364)
T ss_pred             ---cCCCCEEEeccccc
Confidence               57999999999654

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=5.5e-05  Score=69.47  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+..++||+|+.+++-    .+++..+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------~nl~~~~~~ADIvI~AvGk----~~~i~~~~  218 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------ADLAGEVGRADILVAAIGK----AELVKGAW  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            3468999999999986 79999999999999999876432         2688999999999999973    45777765


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                         .|+|+++||+|--..
T Consensus       219 ---ik~gaiVIDvGin~~  233 (282)
T PRK14182        219 ---VKEGAVVIDVGMNRL  233 (282)
T ss_pred             ---cCCCCEEEEeeceec
Confidence               579999999996553

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.91  E-value=4.6e-05  Score=71.61  Aligned_cols=80  Identities=16%  Similarity=0.351  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|+++|..|...|+.|..+....         .++.+..++||+|+.+++    -.+++..+.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvG----kp~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAG----IPNLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence            4579999999999986 69999999999999998876432         258899999999999997    335677665


Q ss_pred             HhccCCCcEEEEcCCCc
Q 021388          218 IDALGPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       276 ---vk~GavVIDVGin~  289 (345)
T PLN02897        276 ---LKPGAVVIDVGTTP  289 (345)
T ss_pred             ---cCCCCEEEEccccc
Confidence               57999999999654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.90  E-value=2.2e-05  Score=76.61  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------ccc--cCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KYK--YYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+.|++++|+|.|.||+.+++.|+..|+ +|++++|+.+...      +..  ...++.+.+.++|+|+.++|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            3789999999999999999999999998 6999999865321      111  1234556778899999988643   33


Q ss_pred             ccCHHHHhcc-----CCCcEEEEcCC
Q 021388          212 IINREVIDAL-----GPKGVLINIGR  232 (313)
Q Consensus       212 li~~~~l~~m-----k~ga~lIn~~r  232 (313)
                      ++..+.++.+     +.+.++||.+-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            4566666543     24567777764

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=6.5e-05  Score=69.15  Aligned_cols=81  Identities=17%  Similarity=0.363  Sum_probs=65.7

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.||++.|||-+. +|+++|..|...    ++.|+.+....         .++.+.+++||+|+.+++-    .+++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T---------~~l~~~~~~ADIvV~AvG~----p~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS---------ENLTEILKTADIIIAAIGV----PLFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence            4479999999999986 799999999887    78888876422         2688999999999999973    3567


Q ss_pred             CHHHHhccCCCcEEEEcCCCcc
Q 021388          214 NREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      ..+.   .|+|+++||+|--.+
T Consensus       215 ~~~~---ik~GavVIDvGin~~  233 (287)
T PRK14181        215 KEEM---IAEKAVIVDVGTSRV  233 (287)
T ss_pred             CHHH---cCCCCEEEEeccccc
Confidence            7765   579999999996553

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=5.5e-05  Score=69.68  Aligned_cols=80  Identities=18%  Similarity=0.325  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHh----CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEA----FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.||++.|||-+. +|+++|..|..    .|++|..+....         .++.+.+++||+|+.+++    ..+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence            4568999999999986 79999999988    788988776432         268899999999999996    44568


Q ss_pred             CHHHHhccCCCcEEEEcCCCc
Q 021388          214 NREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..+.+   |+|+++||+|--.
T Consensus       219 ~~~~v---k~GavVIDVGi~~  236 (286)
T PRK14184        219 TADMV---KPGAVVVDVGINR  236 (286)
T ss_pred             CHHHc---CCCCEEEEeeeec
Confidence            77766   8999999998543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.82  E-value=0.00011  Score=67.53  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=75.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc---------cccCCCHHH-HhhcCCEEEEecCCCh--hh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK---------YKYYPSVVE-LASNCHILVVACPLTE--ET  209 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~l~e-~~~~aDvV~~~lp~~~--~t  209 (313)
                      ..+++++|+|.|.+|++++..+...|++|.+++|+.++...         .....++++ ...++|+|+.++|..-  ..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            46789999999999999999999999999999988653211         111123333 2357999999999642  11


Q ss_pred             hc-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          210 RH-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       210 ~~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      .. .+.   ...++++.+++|+.-.+...  .|.++.++.++.  .+|-
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~--~vdG  236 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK--TIDG  236 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe--eeCC
Confidence            11 122   34578999999998876533  577777777665  4454

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=8.2e-05  Score=68.90  Aligned_cols=80  Identities=18%  Similarity=0.360  Sum_probs=65.1

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHh----CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEA----FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.||++.|||-+. +|+++|..|..    .|++|.......         .++.+.+++||+|+.+++..    +++
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li  220 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFI  220 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence            3469999999999986 79999999986    578888766432         25889999999999999632    678


Q ss_pred             CHHHHhccCCCcEEEEcCCCc
Q 021388          214 NREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..+.+   |+|+++||+|-..
T Consensus       221 ~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        221 TADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CHHHc---CCCCEEEEeeccc
Confidence            88776   8999999998554

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.80  E-value=7.6e-05  Score=68.13  Aligned_cols=115  Identities=22%  Similarity=0.281  Sum_probs=84.3

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.+++|+++.|||-|+ +|++++..|...++.|.++....         .++.+..++||+|+.++-    -.+++..+ 
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d-  216 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKAD-  216 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Cccccccc-
Confidence            4479999999999998 58999999999999999887543         368899999999999986    33566544 


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRK  289 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~  289 (313)
                        ..|+|+++||+|--.+-+          +++   .=||-..+.       ..-.-.+||--||--.-+..
T Consensus       217 --~vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v-------~~~a~~iTPVPGGVGPmTva  266 (283)
T COG0190         217 --MVKPGAVVIDVGINRVND----------GKL---VGDVDFDSV-------KEKASAITPVPGGVGPMTVA  266 (283)
T ss_pred             --cccCCCEEEecCCccccC----------Cce---EeeccHHHH-------HHhhcccCCCCCccCHHHHH
Confidence              468999999999766544          555   446632221       11222688888887764443

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.00011  Score=67.75  Aligned_cols=80  Identities=14%  Similarity=0.293  Sum_probs=64.4

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.||++.|||-+. +|+++|..|...    ++.|.++....         .++.+.+++||+|+.+++-    .+++
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGk----p~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQ----PEFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence            3469999999999986 799999999876    68888775322         2688999999999999973    3467


Q ss_pred             CHHHHhccCCCcEEEEcCCCc
Q 021388          214 NREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..+.   .|+|+++||+|--.
T Consensus       219 ~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        219 KADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CHHH---cCCCCEEEEecCcc
Confidence            6654   58999999999654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.77  E-value=5.3e-05  Score=69.85  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcccc----------ccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNLKY----------KYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~~----------~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      .+.++++.|+|.|.+|++++..|...| .+|.+++|+.++....          ....++.+.+.++|+|+.++|.....
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            478899999999999999999999999 5899999986532110          00013346678899999999865321


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      ..-...-....++++.+++|+.=.+ ..+ .|+++.++.++
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~  238 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGA  238 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcC
Confidence            1101111224557778888876533 233 34444444433

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00013  Score=67.47  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=86.1

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.||++.|||-+. +|+++|..|...    ++.|+.+....         .++.+.+++||+|+.++.    -.+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------~~l~~~~~~ADIvVsAvG----kp~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------KNLARHCQRADILIVAAG----VPNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------cCHHHHHhhCCEEEEecC----CcCcc
Confidence            4579999999999886 799999999876    78898775332         268899999999999986    33467


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHH
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD  293 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~  293 (313)
                      ..+.   .|+|+++||+|.-.+.+.      .++|+.. ..=||-. |     ...+.. -.+||--||--.-+..-+.+
T Consensus       223 ~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdf-e-----~v~~~a-~~iTPVPGGVGp~T~a~L~~  285 (297)
T PRK14168        223 KPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDF-D-----AVKEIA-GKITPVPGGVGPMTIAMLMR  285 (297)
T ss_pred             CHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccH-H-----HHHhhc-cEecCCCCCchHHHHHHHHH
Confidence            6655   579999999996553211      1234310 2445531 1     111111 26889877766544444444


Q ss_pred             HHHHHHHHH
Q 021388          294 LVLGNLEAH  302 (313)
Q Consensus       294 ~~~~nl~~~  302 (313)
                      ..++.-+++
T Consensus       286 N~~~a~~~~  294 (297)
T PRK14168        286 NTLKSAKFH  294 (297)
T ss_pred             HHHHHHHHH
Confidence            334333443

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.75  E-value=0.0002  Score=57.37  Aligned_cols=100  Identities=27%  Similarity=0.441  Sum_probs=71.4

Q ss_pred             CEEEEEc----CChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          145 KTVGIIG----LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       145 ~~igiiG----~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      |+|+|||    -|..|..+.+.|+..|++|+..++......+...+.+++|.-...|++++++|. +.+..++ ++ +..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-~~-~~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-DE-AAA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH-HH-HHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH-HH-HHH
Confidence            5899999    789999999999999999999999887777777788898855889999999982 2333343 32 344


Q ss_pred             cCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          221 LGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       221 mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +..+.+++..+    ..++++.+.+++..+.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            46778888888    6778888999888877

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.74  E-value=7.1e-05  Score=65.09  Aligned_cols=93  Identities=17%  Similarity=0.145  Sum_probs=59.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccc----------c--c--cC---CCHHHHhhcCCEEEE
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------Y--K--YY---PSVVELASNCHILVV  201 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~--~--~~---~~l~e~~~~aDvV~~  201 (313)
                      ..+.++++.|+|. |.+|+.+++.+...|++|..++|+.++...          .  .  ..   .++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            4578899999995 999999999999999999999987542110          0  0  01   123456777888877


Q ss_pred             ecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          202 ACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       202 ~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      +.|....+  .+  ..-...+++.+++|+.+...+
T Consensus       104 at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078         104 AGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCCCCcee--ch--hhhcccCceeEEEEccCCCCC
Confidence            77754321  11  111123445666666655543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.72  E-value=0.00012  Score=68.96  Aligned_cols=88  Identities=20%  Similarity=0.355  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----------c--c-cc------ccCCCHHHHh-hcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----------N--L-KY------KYYPSVVELA-SNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----------~--~-~~------~~~~~l~e~~-~~aDvV~~~lp  204 (313)
                      ++|+|||.|.||..+|..|...|.+|..|+|+++.          .  . +.      ....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            36999999999999999999999999999986531          0  0 11      1234566665 58999999999


Q ss_pred             CChhhhcccCHHHHh-ccCCCcEEEEcCCCc
Q 021388          205 LTEETRHIINREVID-ALGPKGVLINIGRGP  234 (313)
Q Consensus       205 ~~~~t~~li~~~~l~-~mk~ga~lIn~~rg~  234 (313)
                      .. ++..++ +++.+ .+++++.+|....|-
T Consensus        81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            43 344443 44444 667777777776664

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.71  E-value=8.9e-05  Score=69.92  Aligned_cols=84  Identities=21%  Similarity=0.353  Sum_probs=62.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh-CC-CCEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA-FS-CPINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      -+++||||.|.+|+..++.+.. +. -+|.+|||+.++..         +  .....+.++++++||+|++|+|..   .
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence            4689999999999997776653 22 46999999876421         1  223578999999999999999853   3


Q ss_pred             cccCHHHHhccCCCcEEEEcCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .++..+   .+|||+.+..+|..
T Consensus       205 P~~~~~---~l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKAD---WVSEGTHINAIGAD  224 (325)
T ss_pred             cEecHH---HcCCCCEEEecCCC
Confidence            455544   45999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00018  Score=66.65  Aligned_cols=80  Identities=15%  Similarity=0.259  Sum_probs=64.1

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +.++.||++.|||-+. +|+++|..|...    ++.|..+....         .++.+..++||+|+.++.-    .+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~~l~~~~~~ADIvIsAvGk----p~~i  218 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------DDLAAKTRRADIVVAAAGV----PELI  218 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence            4469999999999986 799999999865    78898775322         2688999999999998863    3467


Q ss_pred             CHHHHhccCCCcEEEEcCCCc
Q 021388          214 NREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..+.   .|+|+++||+|--.
T Consensus       219 ~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        219 DGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CHHH---cCCCCEEEEccccc
Confidence            6655   57999999999654

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.70  E-value=0.00039  Score=63.42  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=73.9

Q ss_pred             HHHHHHhCC--CCEEEecCCCCCcc-----ccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEE
Q 021388          159 VAKRAEAFS--CPINYYSRTEKPNL-----KYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN  229 (313)
Q Consensus       159 iA~~l~~~G--~~V~~~~~~~~~~~-----~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn  229 (313)
                      +|+.|+..|  .+|++||+++....     +..  ...+ .+.++++|+|++|+|.. .+..++ +++...+++|++++|
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEE
Confidence            577888777  68999999876322     221  1223 57889999999999943 344444 667788999999999


Q ss_pred             cCCCccccHHHHHHHHHhCCeeEE-EecCCCCCCCC----CCcccCCCceEEccCCC
Q 021388          230 IGRGPHVDERELVSALVEGRLGGA-GLDVFENEPHV----PEELFGLENVVLMPHVG  281 (313)
Q Consensus       230 ~~rg~~vd~~al~~al~~~~l~ga-~lDV~~~Ep~~----~~~L~~~pnv~lTPH~a  281 (313)
                      ++.-..--.+++.+.+..+ .... +=-.|.+|--.    ...|++--+++++|+-.
T Consensus        78 v~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             --S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             eCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            9988766666666666622 2211 22345555321    12588888999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.69  E-value=0.00052  Score=64.28  Aligned_cols=106  Identities=20%  Similarity=0.239  Sum_probs=73.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---cccc--------------cCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---LKYK--------------YYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---~~~~--------------~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|||.|.||..+|..|...|++|.++.|+....   .+..              ...+. +....+|+|+++++...
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~~   84 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTTA   84 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCCC
Confidence            689999999999999999999999999998865211   0100              01122 24578999999998543


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388          208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG  254 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~  254 (313)
                       +...+ +...+.+++++.++...-| +-.++.+.+.+...++.++.
T Consensus        85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence             33332 4455567788888887666 44667777777777766543

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.68  E-value=0.00029  Score=73.23  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=79.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||..||..+...|++|..||++++...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998865210                0             0112345 44789


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      ||+|+=++|...+.+.-+-+++-+.++++++|...+.+  +....|.+.+... -+.+++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~~g~Hff  452 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRP-ENFCGMHFF  452 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCC-ccEEEEecC
Confidence            99999999988888877767777889999988443332  4456666666432 223455555

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.68  E-value=0.00018  Score=67.91  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=62.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      .+.|+++.|||.|.||+.+++.|...|. +|++.+|+..............+...++|+|+.+...|.....++..+.++
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~  250 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA  250 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence            5899999999999999999999999996 599999987531111100011144679999998743333334455566555


Q ss_pred             ccCCCcEEEEcCCCccc
Q 021388          220 ALGPKGVLINIGRGPHV  236 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~v  236 (313)
                      ..++ .++||.+=..=|
T Consensus       251 ~~~~-r~~iDLAvPRdI  266 (338)
T PRK00676        251 DIPD-RIVFDFNVPRTF  266 (338)
T ss_pred             hccC-cEEEEecCCCCC
Confidence            4332 377776644333

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.65  E-value=0.00022  Score=67.74  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=64.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------c--cc------ccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------L--KY------KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~--~~------~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|+|||.|.+|..+|..|...| .|..|.++++..            .  +.      ....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999988 677777653210            0  11      123567788899999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      . ..++.++ ++....++++..+|++..|=
T Consensus        87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence            3 3344444 55566778888899988864

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.64  E-value=0.00024  Score=62.40  Aligned_cols=92  Identities=17%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC---CCC---------ccc-------------------ccc--
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT---EKP---------NLK-------------------YKY--  185 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~---~~~---------~~~-------------------~~~--  185 (313)
                      ..|..++|+|+|+|.+|..+|+.|...|. ++..+|++   ...         ..+                   ...  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            45899999999999999999999999999 58898876   210         000                   000  


Q ss_pred             ----CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          186 ----YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       186 ----~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                          ..++.++++++|+|+-+ ..++.++..+.++....++...++...+-
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~  146 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGL  146 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEecc
Confidence                12345678889999888 57888998888888888877666664433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.60  E-value=0.0007  Score=63.08  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=80.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELAS  194 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~  194 (313)
                      -+++||||.|.||+.+|..+...|+.|..+|++++...                +.             ....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            37899999999999999999997799999999854210                00             0112222 678


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep  262 (313)
                      +||+|+=++|-+.+.++-+-++.=...+|+++| -|+|+-+   -.++.+++ +.+-+..++=-|.+-|
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~---it~ia~~~-~rper~iG~HFfNP~~  146 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS---ITELAEAL-KRPERFIGLHFFNPVP  146 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC---HHHHHHHh-CCchhEEEEeccCCCC
Confidence            999999999988888776667677778999998 5665544   45666676 3333345555554433

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.58  E-value=0.00038  Score=72.53  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||..||..+...|++|..+|++++...                +             .....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999998765210                0             01123454 5789


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                      ||+|+=++|.+.+.+.-+-+++=+.++++++|. |+|.   ++...|.+.+... -+..++.-|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~p-~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSRP-EKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-cceEEEeccC
Confidence            999999999888888777677778899999885 4443   4556666766442 2334666663

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.55  E-value=0.00066  Score=70.41  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             CEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELAS  194 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~  194 (313)
                      ++|+|||.|.||+.+|..+. ..|++|..||++++...                +             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            57999999999999999987 58999999998764210                0             0112345 4578


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                      +||+|+=++|...+.+.-+-+++-+.++++++|.....+  +....|.+.++.. -+.+++--|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRP-ENVIGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence            999999999988888877767777788999888543332  3445566666432 2234555553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.55  E-value=0.00085  Score=63.98  Aligned_cols=131  Identities=13%  Similarity=0.202  Sum_probs=93.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aDvV  199 (313)
                      ++|.|+|.|-+|...+..+..+|++|+++|..+.+.            .+             ..+..+.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            579999999999999999999999999999776421            11             12345788899999999


Q ss_pred             EEecCCChhhhcccC--------HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC-CCCCCCCCC----
Q 021388          200 VVACPLTEETRHIIN--------REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV-FENEPHVPE----  266 (313)
Q Consensus       200 ~~~lp~~~~t~~li~--------~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV-~~~Ep~~~~----  266 (313)
                      ++++|.++...+-++        ++..+.++..+++|+=|+-.+=..+.+.+-+....-.. -++| +.+|=|-..    
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~  159 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY  159 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence            999986554344333        45667787779999999999988888888777665332 2222 455544322    


Q ss_pred             cccCCCceEE
Q 021388          267 ELFGLENVVL  276 (313)
Q Consensus       267 ~L~~~pnv~l  276 (313)
                      ..+.-+++++
T Consensus       160 D~~~PdRIVi  169 (414)
T COG1004         160 DFLYPDRIVI  169 (414)
T ss_pred             hccCCCeEEE
Confidence            2334455554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.52  E-value=0.00068  Score=70.44  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=74.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||..||..+...|++|..+|++++...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999999999999998765211                0             0112344 34789


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      ||+|+=++|...+.+.-+-+++=+.++++++|-..+.+  .+..+|.+.++
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~  441 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALK  441 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            99999999988888876667777889999998443332  45566666664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.51  E-value=0.0013  Score=68.42  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             CEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELAS  194 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~  194 (313)
                      ++|+|||.|.||..+|..+. ..|++|..+|++++...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 88999999998764210                0             0112344 4578


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      +||+|+=++|.+.+.+.-+-+++=+.++|+++|...+.+  +....|.+.+... -+.+++--|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecC
Confidence            999999999988888877767777889999998644333  4556666666432 223455555

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.51  E-value=0.0051  Score=55.89  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=91.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC----------------------Cc--c-------ccccCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK----------------------PN--L-------KYKYYP  187 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~----------------------~~--~-------~~~~~~  187 (313)
                      .++.|+++.|-|+|++|+.+|+.|...|++|++. |.+..                      ..  .       +... .
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~  112 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-F  112 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-e
Confidence            4689999999999999999999999999998844 42110                      00  0       0011 1


Q ss_pred             CHHH-HhhcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC
Q 021388          188 SVVE-LASNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV  264 (313)
Q Consensus       188 ~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~  264 (313)
                      +.++ +..+||+++-|.     +.+.|+.+..+.++  +-.+++-.+.+++.+  +-.+.|.++.+. ..=|+.-+-=-.
T Consensus       113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGV  184 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGV  184 (254)
T ss_pred             CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCe
Confidence            2223 335799887664     66789999888885  345677777777644  455788888776 344543221100


Q ss_pred             -CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          265 -PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       265 -~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                       -+  ++.+.     .-|..|.-++..+++.+.+.+...+.+
T Consensus       185 ivs~~E~~qn-----~~~~~w~~e~V~~~l~~~m~~~~~~v~  221 (254)
T cd05313         185 AVSGLEMSQN-----SQRLSWTAEEVDAKLKDIMKNIHDACA  221 (254)
T ss_pred             eeeHHHhhcc-----cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence             01  11111     123344456666777766666655544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.51  E-value=0.0002  Score=66.99  Aligned_cols=84  Identities=13%  Similarity=0.068  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc---------cccc-CCCHHHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL---------KYKY-YPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|++++..         +... ..+.++++.++|+|+.++|.+.   
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence            46799999999999999999864 675 5999999875321         1111 3578889999999999998553   


Q ss_pred             cccCHHHHhccCCCcEEEEcCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .++..    .+|||+.+..+|.-
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCC
Confidence            45543    36999999999854

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.47  E-value=0.0033  Score=56.26  Aligned_cols=109  Identities=19%  Similarity=0.254  Sum_probs=71.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC--Cccc------------------c--ccCCCHHHH-hhc
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK--PNLK------------------Y--KYYPSVVEL-ASN  195 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~--~~~~------------------~--~~~~~l~e~-~~~  195 (313)
                      .++.|++++|.|+|++|+.+|+.|..+|++|++. |....  .+.|                  +  ....+.+++ -.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            3589999999999999999999999999999854 43110  0000                  0  000112222 247


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ||+++-|.+     .+.++.+....++ -.+++-.+-+.+ . ....+.|+++.+. ++=|.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~-~~PD~  159 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL-VVPDI  159 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE-EEChH
Confidence            899887765     3467888888886 445566666665 4 5566888888887 34443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.44  E-value=0.00037  Score=67.82  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=60.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------c-c--ccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------K-Y--KYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~-~--~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .+.|+++.|||.|.||+.+++.|...|. ++++++|+.....      + .  ....++.+.+.++|+|+.|++..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            4789999999999999999999999997 5999999865321      1 1  11245567789999999998743   3


Q ss_pred             cccCHHHHhccCCCcEEEEcC
Q 021388          211 HIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .+|..+...  .+..++||.+
T Consensus       255 ~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeC
Confidence            345544432  1224555554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.44  E-value=5.7e-05  Score=59.08  Aligned_cols=87  Identities=17%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--CccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .++|+++.|||.|.+|..=++.|...|++|+++++...  +..-......+++.+..+|+|+.+.+...     +++...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHHHHH
Confidence            58999999999999999999999999999999998741  11000112234566788999887775322     345555


Q ss_pred             hccCCCcEEEEcCC
Q 021388          219 DALGPKGVLINIGR  232 (313)
Q Consensus       219 ~~mk~ga~lIn~~r  232 (313)
                      ...+.-.+++|++-
T Consensus        79 ~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   79 ADARARGILVNVVD   92 (103)
T ss_dssp             HHHHHTTSEEEETT
T ss_pred             HHHhhCCEEEEECC
Confidence            55565667777753

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.43  E-value=0.00098  Score=62.73  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +..++|+|||.|.+|..+|..+...| .++..+|++.+...+                 .....+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45679999999999999999998878 689999987643211                 01123555 679999999998


Q ss_pred             --CCChh-hh--------cccC--HHHHhccCCCcEEEEcCCCccccHHHHHHHHH--hCCeeEEE--ec
Q 021388          204 --PLTEE-TR--------HIIN--REVIDALGPKGVLINIGRGPHVDERELVSALV--EGRLGGAG--LD  256 (313)
Q Consensus       204 --p~~~~-t~--------~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~--~~~l~ga~--lD  256 (313)
                        |..+. ++        .++.  .+.+....|.+++|+++...-+-...+.+.-.  ..++.|.+  +|
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              43331 11        1110  12333446888999986544333334444321  35566555  55

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.42  E-value=0.0007  Score=63.89  Aligned_cols=84  Identities=17%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+.++..          +.  ....++++.+++||+|++++|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            3578999999999999999997 4775 5999999875321          11  22467889999999999999854  


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                       ..++..+.   +|+|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             34565544   689998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.42  E-value=0.00044  Score=68.57  Aligned_cols=101  Identities=14%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-----ccCCCHHHH--hhcCCEEEEecCCChhhhc
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-----KYYPSVVEL--ASNCHILVVACPLTEETRH  211 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~e~--~~~aDvV~~~lp~~~~t~~  211 (313)
                      +..+.+++++|+|.|.+|++++..+...|++|.+++|+.++....     ....+++++  +.++|+|++|+|....   
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~---  403 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT---  403 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence            345789999999999999999999999999999999875432110     011122222  5689999999996532   


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       +.. .+   .  .+++|+.-.+....  +.++.++.++.
T Consensus       404 -~~~-~l---~--~~v~D~~Y~P~~T~--ll~~A~~~G~~  434 (477)
T PRK09310        404 -IPK-AF---P--PCVVDINTLPKHSP--YTQYARSQGSS  434 (477)
T ss_pred             -chh-HH---h--hhEEeccCCCCCCH--HHHHHHHCcCE
Confidence             211 12   1  26777766554322  55555555443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.41  E-value=0.00034  Score=65.95  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ..++++|||.|.+|+..+..+. ..+. +|.+|+|++++..          +.  ..+.+++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4578999999999999887764 4566 5889999875321          11  23567889999999999999855  


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                       ..++.    ..+|+|+.++.+|.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             33443    556999999888753

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.39  E-value=0.0017  Score=60.48  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEec--CCCCCccccccCCCHHHHhhcCCEEEEecCCChhhh---c------
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS--RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETR---H------  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~--~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~---~------  211 (313)
                      .|++++|||--.--..+++.|.+.|++|.++.  .......++....+.+++++++|+|++-+|.+.+..   .      
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            37899999999999999999999999988643  222234455556677889999999998888653321   1      


Q ss_pred             -ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          212 -IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       212 -li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                       -++.+.++.|++|..++ +|.+..   . +-+.+.+.++.  .+|..+
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~--~~~~~~  122 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRK--LVELFE  122 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCe--EEEEec
Confidence             13578999999998544 444432   2 44667788887  445443

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.38  E-value=0.00065  Score=64.28  Aligned_cols=95  Identities=22%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             cccccCCCEEEEEcC-ChHHHHHHHHHHh-CCC-CEEEecCCCCCccc------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          138 LTTKFTGKTVGIIGL-GRIGMAVAKRAEA-FSC-PINYYSRTEKPNLK------YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       138 ~~~~l~g~~igiiG~-G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~~------~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++..+.|+++.|+|. |.||+.+++.|.. .|. +++.++|+......      .....++++.+.++|+|+.+....  
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~--  226 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP--  226 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence            345699999999998 8999999999974 564 78889987543211      111235778899999988766432  


Q ss_pred             hhc-ccCHHHHhccCCCcEEEEcCCCccccH
Q 021388          209 TRH-IINREVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       209 t~~-li~~~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                       .. +++.+.   ++++.++||.++..=||.
T Consensus       227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence             23 366654   479999999999887775

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.38  E-value=0.00049  Score=64.89  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             EEEEcCChHHHHHHHHHHh-CCCCEEEe-cCCCCCc------cc------------------cccCCCHHHHhhcCCEEE
Q 021388          147 VGIIGLGRIGMAVAKRAEA-FSCPINYY-SRTEKPN------LK------------------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~-~G~~V~~~-~~~~~~~------~~------------------~~~~~~l~e~~~~aDvV~  200 (313)
                      |||+|+|.||+.+++.+.. -+++|.+. |..++..      .+                  .....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999999764 46777654 4333210      00                  111346889999999999


Q ss_pred             EecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          201 VACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .|.|   .+.+..+.+.+..|+.+++|+-.--
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            8875   4556778899999999998887543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.38  E-value=0.00074  Score=63.16  Aligned_cols=111  Identities=17%  Similarity=0.206  Sum_probs=71.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.||..+|..+...|. +|..+|...+...+                 .....+.++ +++||+|+++.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988776 89999985542110                 011245666 78999999998732


Q ss_pred             hh---h--------hcccC--HHHHhccCCCcEEEEcCCCccccHHHHHHH--HHhCCeeEEE--ec
Q 021388          207 EE---T--------RHIIN--REVIDALGPKGVLINIGRGPHVDERELVSA--LVEGRLGGAG--LD  256 (313)
Q Consensus       207 ~~---t--------~~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~a--l~~~~l~ga~--lD  256 (313)
                      ..   +        ..++.  .+.+....+++++|+++...=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            21   1        11111  112333457899999877554444455555  4455666664  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.37  E-value=0.00058  Score=63.20  Aligned_cols=90  Identities=17%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc-------------ccCCCHHHHhhcCCEEEEecCCCh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY-------------KYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~-------------~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      +.++++.|+|.|.+|++++..|...|+ +|.++||+..+....             ....++.+.++++|+|+.++|..-
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm  204 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM  204 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence            567899999999999999999999998 699999986532210             012344556788999999988542


Q ss_pred             hh--hcccCHHHHhccCCCcEEEEcCCCc
Q 021388          208 ET--RHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       208 ~t--~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..  ...++.   ..++++.+++|+.=.+
T Consensus       205 ~~~~~~~~~~---~~l~~~~~v~DivY~P  230 (284)
T PRK12549        205 AKHPGLPLPA---ELLRPGLWVADIVYFP  230 (284)
T ss_pred             CCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence            11  011222   2355666666665443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.36  E-value=0.00038  Score=61.22  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |...++.|+++.|||.|.+|...++.|...|++|.++++..
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            34567999999999999999999999999999999998754

>PLN02477 glutamate dehydrogenase

Probab=97.35  E-value=0.01  Score=57.67  Aligned_cols=146  Identities=16%  Similarity=0.169  Sum_probs=90.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Cccc------------------cc--cCCCHHH-Hhh
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLK------------------YK--YYPSVVE-LAS  194 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~------------------~~--~~~~l~e-~~~  194 (313)
                      +.++.|++|+|.|+|++|+.+|+.|...|++|+ +.|.+..  .+.|                  +.  ...+.++ +..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            346899999999999999999999999999988 4454311  0000                  00  0012222 245


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV  274 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv  274 (313)
                      +||+++-|.     ..+.|+++....++ -.+++-.+.+.+ .. +-.+.|+++.+. ++=|+.-+          .-.|
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~-~~PD~~aN----------aGGV  341 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV-VLPDIYAN----------SGGV  341 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE-EEChHHhC----------CCCe
Confidence            799887654     45678888888874 567778888887 43 345888888886 34444322          2222


Q ss_pred             EEc--------cCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          275 VLM--------PHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       275 ~lT--------PH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      +.+        .|.-|..++..+++.+.+.+.+.+.+
T Consensus       342 ivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~  378 (410)
T PLN02477        342 TVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALK  378 (410)
T ss_pred             eeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            221        12334445556666656666665554

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.34  E-value=0.00051  Score=66.31  Aligned_cols=90  Identities=20%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------c--cccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------K--YKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      +|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+..      +  +....++.+.+.++|+|+.++..   ...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence            4899999999999999999999999996 6889999876432      2  12235667789999999998753   234


Q ss_pred             ccCHHHHhcc-C--CCcEEEEcCCC
Q 021388          212 IINREVIDAL-G--PKGVLINIGRG  233 (313)
Q Consensus       212 li~~~~l~~m-k--~ga~lIn~~rg  233 (313)
                      ++..+.+... +  +.-++||.+=.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCC
Confidence            5555444332 1  11466776533

>PRK06046 alanine dehydrogenase; Validated

Probab=97.33  E-value=0.00063  Score=64.18  Aligned_cols=82  Identities=24%  Similarity=0.369  Sum_probs=61.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      -+++||||.|.+|+..++.+.. .+. +|.+|||+++...          +  ...+.+++++++ +|+|++++|..   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            3689999999999999998873 455 4778999875311          1  123567889887 99999999854   


Q ss_pred             hcccCHHHHhccCCCcEEEEcCC
Q 021388          210 RHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .-++..+.   +|+|+.+..+|.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCC
Confidence            35665544   589999888873

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.32  E-value=0.0018  Score=52.30  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHh-CCCCE-EEecCCCCC-------------ccccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          146 TVGIIGL-GRIGMAVAKRAEA-FSCPI-NYYSRTEKP-------------NLKYKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~-~G~~V-~~~~~~~~~-------------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      +|+|+|+ |+||+.+++.+.. -|+++ .++++....             ..+.....++++++.++|+++-.. ..+.+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~   80 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV   80 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence            7999999 9999999999987 77885 567776621             112334578999999999988766 22233


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ...+ +..   ++.|.-+|-..+|---++.+.++.+.+
T Consensus        81 ~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   81 YDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             HHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            3222 222   334666666666654333344444433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.31  E-value=0.00079  Score=58.95  Aligned_cols=62  Identities=15%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP  223 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~  223 (313)
                      ++++|||- |.||+-++..++..|+.|.                     +++||+|++|+|-. .+..     .++.+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~-----~i~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALN-----YIESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHH-----HHHHhC-
Confidence            37999988 9999999999999999985                     36899999999943 2232     333333 


Q ss_pred             CcEEEEcCCCcc
Q 021388          224 KGVLINIGRGPH  235 (313)
Q Consensus       224 ga~lIn~~rg~~  235 (313)
                       .+++|++.-+-
T Consensus        53 -~~v~Dv~SvK~   63 (197)
T PRK06444         53 -NNFVEISSVKW   63 (197)
T ss_pred             -CeEEeccccCH
Confidence             37899987553

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.31  E-value=0.00068  Score=64.07  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|+.++..          +.  ....++++++.++|+|++++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            34789999999999998888874 565 6999999865321          11  22467889999999999998854  


Q ss_pred             hhcccCHHHHhccCCCcEEEEcC
Q 021388          209 TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                       ..++..+.   +++|+.+..++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             34555543   57887766643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.29  E-value=0.00073  Score=63.68  Aligned_cols=84  Identities=19%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc------CCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY------YPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .|++|+|+|+|..|....+.++++|++|+++|+++++..     ++..      ....+++-+.+|+++.++| . .+- 
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~~-  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-ATL-  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hhH-
Confidence            589999999999999999999999999999999987532     2211      1112333334888877777 3 222 


Q ss_pred             ccCHHHHhccCCCcEEEEcCC
Q 021388          212 IINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~r  232 (313)
                         ...+..|+++..++-+|-
T Consensus       243 ---~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             ---HHHHHHHhcCCEEEEECC
Confidence               445666777766666543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.28  E-value=0.02  Score=56.13  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=88.0

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC---cccc----------------------c-----cCCC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP---NLKY----------------------K-----YYPS  188 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~---~~~~----------------------~-----~~~~  188 (313)
                      +.+|.|++|.|.|+|++|...|+.|..+|++|++.+.+...   +.|.                      .     ...+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            34699999999999999999999999999999874331110   0000                      0     0012


Q ss_pred             HHHH-hhcCCEEEEecCCChhhhcccCHHHHhccCC-CcE-EEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC-
Q 021388          189 VVEL-ASNCHILVVACPLTEETRHIINREVIDALGP-KGV-LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV-  264 (313)
Q Consensus       189 l~e~-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~-ga~-lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~-  264 (313)
                      .+++ -..||+++-|.     +.+.|+.+....++. |.. ++-.+.+ ++..++. +.|.++.+. .+=|+.-+-=-. 
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~-~~PD~~aNAGGVi  374 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL-YAPGKAANAGGVS  374 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE-EeChhhccCCCee
Confidence            2232 24688876544     567899998888865 444 4444555 6776665 455555554 244443111100 


Q ss_pred             CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          265 PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       265 ~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      -+  ++.+  |   .-+..|..++..+++.+.+.+...+.+
T Consensus       375 vs~~E~~q--n---~~~~~W~~eeV~~~L~~~m~~~~~~v~  410 (444)
T PRK14031        375 VSGLEMTQ--N---SIKLSWSSEEVDEKLKSIMKNIHEACV  410 (444)
T ss_pred             eehhhhhc--c---ccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            00  1111  1   123455556666776666666555544

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0008  Score=64.60  Aligned_cols=99  Identities=12%  Similarity=0.165  Sum_probs=64.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++|.|||.|.+|+.+|..|...| .+|++.||+.++...               +.....+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999888 899999998653211               11123567888999999999984422


Q ss_pred             hhcccCHHHH-hccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          209 TRHIINREVI-DALGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       209 t~~li~~~~l-~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                            ...+ +.++-|.-.+|++-...-- -++.+..++.++
T Consensus        82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi  117 (389)
T COG1748          82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI  117 (389)
T ss_pred             ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence                  2222 3345566666665444332 334444444433

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.27  E-value=0.00075  Score=63.36  Aligned_cols=102  Identities=12%  Similarity=0.110  Sum_probs=67.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCC-CCc---cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTE-KPN---LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~-~~~---~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .+|||||+|+||+.+++.+... ++++. +++++. ...   .+.....+.++++.+.|+|++|+|...+     -....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence            5899999999999999999765 78876 578875 211   1222234677778899999999985433     14445


Q ss_pred             hccCCCcEEEEcCCCc--ccc-HHHHHHHHHh-CCee
Q 021388          219 DALGPKGVLINIGRGP--HVD-ERELVSALVE-GRLG  251 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~--~vd-~~al~~al~~-~~l~  251 (313)
                      ..|+.|.-+|+..--.  +-+ .+.+-++.++ |++.
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            5577787788875321  112 3445555554 5655

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.26  E-value=0.0014  Score=59.72  Aligned_cols=100  Identities=21%  Similarity=0.235  Sum_probs=66.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC---CCCE-EEecCCCCCcc----ccccCCCHHHH-hhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF---SCPI-NYYSRTEKPNL----KYKYYPSVVEL-ASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~---G~~V-~~~~~~~~~~~----~~~~~~~l~e~-~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ++|||||+|.||+.+++.+..-   ++++ .++++..+...    ....+.+++++ ..+.|+|+=|..  ++.   +-+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~--~~a---v~e   77 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG--QQA---IAE   77 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC--HHH---HHH
Confidence            5899999999999999998753   2554 45666643211    13346789996 688999988876  221   112


Q ss_pred             HHHhccCCCcEEEEcCCCcccc---HHHHHHHHHhCC
Q 021388          216 EVIDALGPKGVLINIGRGPHVD---ERELVSALVEGR  249 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd---~~al~~al~~~~  249 (313)
                      --.+.|+.|.-++=.|-|.+.|   .+.|.++.++++
T Consensus        78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g  114 (267)
T PRK13301         78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG  114 (267)
T ss_pred             HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence            2233456677788888888887   455666655543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.26  E-value=0.00085  Score=62.98  Aligned_cols=87  Identities=23%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      +++||||.|..|+.-++.+. -++. +|.+|+|+++...         +  ...+.+.++++++||+|+.++|.+..+ -
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            58999999999999888876 4666 5999999875321         1  223578999999999999998865432 5


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCcc
Q 021388          212 IINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      ++..+   .++||+.++.+|....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            66554   5789999999997543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.25  E-value=0.0011  Score=58.63  Aligned_cols=92  Identities=24%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCC-EEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCP-INYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+||+||+|.||+.+.+.++.-  +++ +.+||++.++..      +.....+++|++++.|+++=|.. .+..+    +
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~----e   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVR----E   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHH----H
Confidence            4799999999999999999843  454 789999876433      12234679999999999987764 22222    2


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHH
Q 021388          216 EVIDALGPKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al  241 (313)
                      -..+.|+.|-=+|=+|-|.+.|+.-+
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l~  101 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGLR  101 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHHH
Confidence            23445667766777778888876543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.25  E-value=0.00098  Score=61.05  Aligned_cols=102  Identities=23%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCc-----c--ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPN-----L--KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~-----~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.||+.+++.+... ++++. ++++.....     .  +.....+++++..+.|+|+.|.|.... .    +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence            4899999999999999999865 56643 344332211     1  223456788875569999999984322 1    2


Q ss_pred             HHHhccCCCcEEEEcCCCccccH---HHHHHHHHhCCee
Q 021388          216 EVIDALGPKGVLINIGRGPHVDE---RELVSALVEGRLG  251 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~---~al~~al~~~~l~  251 (313)
                      -....++.|.-++-.+-+.+.|.   +.|.++.++++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            23344556666665666655554   4567777666554

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.24  E-value=0.0054  Score=54.54  Aligned_cols=104  Identities=19%  Similarity=0.195  Sum_probs=69.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCC----------CC-----cc-ccccC-----CCHHHH-hhcC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTE----------KP-----NL-KYKYY-----PSVVEL-ASNC  196 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~----------~~-----~~-~~~~~-----~~l~e~-~~~a  196 (313)
                      .++.|+++.|.|+|++|+.+|+.|...|.+|. +.|.+.          +.     .. .....     .+-+++ -.+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            35899999999999999999999999999755 456554          10     00 00001     011232 2479


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      |+++-|.+.     ++++.+....++ -.+++-.+.+++.+  .-.+.|++..+.
T Consensus        99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            999887763     367888888886 45566666777655  456677777665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.21  E-value=0.0014  Score=61.80  Aligned_cols=82  Identities=27%  Similarity=0.294  Sum_probs=65.6

Q ss_pred             CEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      +++||||.|..++..++.++ -++. +|.+|+|+++...          +  .....+.+++++.||+|+.++|.++   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            58999999999999999887 4566 5999999886422          1  2346789999999999999998665   


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .++..+.   +|||+.+..+|.
T Consensus       208 Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             CeecHhh---cCCCcEEEecCC
Confidence            5676655   569999999994

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.18  E-value=0.00099  Score=53.37  Aligned_cols=85  Identities=14%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             EEEEEc-CChHHHHHHHHHHhC-CCCEEEe-cCCCCC--ccc-----cc-c-CCCH--HHH-hhcCCEEEEecCCChhhh
Q 021388          146 TVGIIG-LGRIGMAVAKRAEAF-SCPINYY-SRTEKP--NLK-----YK-Y-YPSV--VEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~~~-G~~V~~~-~~~~~~--~~~-----~~-~-~~~l--~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      ++||+| .|.+|+.+++.+... ++++.+. +++...  ...     .. . ....  +++ ..++|+|++|+|......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            489999 599999999999874 7887655 433211  110     00 0 0111  111 258999999999664433


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                       .+ ......+++|.++|+++.
T Consensus        81 -~~-~~~~~~~~~g~~viD~s~  100 (122)
T smart00859       81 -IA-PLLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             -HH-HHHHhhhcCCCEEEECCc
Confidence             22 133556789999999983

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.17  E-value=0.0016  Score=61.10  Aligned_cols=83  Identities=17%  Similarity=0.313  Sum_probs=63.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc---------cc--ccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL---------KY--KYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      -++++|||.|..++..++.+.. +.. +|.+|+|++++..         +.  ....+.++++++||+|+.+++.+   .
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence            4699999999999998887764 344 5999999876422         11  22467899999999999998744   4


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      -++..+   .+|||+.++.+|.
T Consensus       205 P~~~~~---~l~~G~hi~~iGs  223 (315)
T PRK06823        205 PLLQAE---DIQPGTHITAVGA  223 (315)
T ss_pred             ceeCHH---HcCCCcEEEecCC
Confidence            566555   4689999999983

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.12  E-value=0.0011  Score=63.97  Aligned_cols=87  Identities=21%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh-CC-C-CEEEecCCCCCcc-----------c---cccCCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA-FS-C-PINYYSRTEKPNL-----------K---YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~-~G-~-~V~~~~~~~~~~~-----------~---~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      -+++||||.|..++..++.+.. +. . +|.+|+|++++..           +   +..+.+.++++++||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            3689999999999999988875 42 4 6999999875311           1   223578999999999999999754


Q ss_pred             h---hhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          207 E---ETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       207 ~---~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .   .+.-++..+   .+|||+.++.++.-
T Consensus       235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~  261 (379)
T PRK06199        235 TGDPSTYPYVKRE---WVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence            3   334566554   45799988877653

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.09  E-value=0.019  Score=56.14  Aligned_cols=151  Identities=16%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEE--------ecCCCCCcc------------------------ccccC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY--------YSRTEKPNL------------------------KYKYY  186 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~--------~~~~~~~~~------------------------~~~~~  186 (313)
                      +.++.|++|.|=|+|++|+..|+.|..+|++|++        ||+..-...                        +....
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            3468999999999999999999999999999998        563321100                        11111


Q ss_pred             CCHHHH-hhcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388          187 PSVVEL-ASNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH  263 (313)
Q Consensus       187 ~~l~e~-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~  263 (313)
                       +-+++ ...||+++-|.     +.+.|+.+....+.  .-.+++-.+.+ ++..++- +.|+++.+. ++=|+.-+-=-
T Consensus       303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGG  373 (445)
T PRK14030        303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGG  373 (445)
T ss_pred             -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCC
Confidence             12232 34688876554     67789888888883  24556666677 5666544 777777776 34454322110


Q ss_pred             C-CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          264 V-PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       264 ~-~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      . -+  ++.+  |   .-|..|..++..+++.+.+.+.+.+.+
T Consensus       374 Vivs~~E~~q--n---~~~~~w~~eeV~~~L~~~m~~~~~~v~  411 (445)
T PRK14030        374 VATSGLEMSQ--N---AMHLSWSAEEVDEKLHQIMSGIHEQCV  411 (445)
T ss_pred             eeeehhhhhc--c---ccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            0 01  1111  1   135566667777777777666666554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.08  E-value=0.0013  Score=60.05  Aligned_cols=109  Identities=19%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             EEEEcC-ChHHHHHHHHHHhCC----CCEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388          147 VGIIGL-GRIGMAVAKRAEAFS----CPINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       147 igiiG~-G~iG~~iA~~l~~~G----~~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      |+|||. |.+|..+|..+...|    .++..+|..++...+                .....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998777    689999987653211                11134567889999999996521


Q ss_pred             --Ch---------hhhcccC--HHHHhccCCCcEEEEcCCCccccHH--HHHHH--HHhCCeeEEE-ecC
Q 021388          206 --TE---------ETRHIIN--REVIDALGPKGVLINIGRGPHVDER--ELVSA--LVEGRLGGAG-LDV  257 (313)
Q Consensus       206 --~~---------~t~~li~--~~~l~~mk~ga~lIn~~rg~~vd~~--al~~a--l~~~~l~ga~-lDV  257 (313)
                        .+         .+..++.  .+.+....|.++++|.+  +.+|.-  .+.+.  +...++.|.+ +|.
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~  148 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP  148 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence              11         0111110  12333445899999996  444443  34444  4567788888 775

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.05  E-value=0.00097  Score=52.86  Aligned_cols=101  Identities=21%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             EEEEEcCChHHHHHHHHHHhC--CCCEE-EecCCCCCc------cccccCCCHHHHhh--cCCEEEEecCCChhhhcccC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAF--SCPIN-YYSRTEKPN------LKYKYYPSVVELAS--NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++||||+|.+|+.....+...  ++++. ++|++++..      .+...+.+++++++  +.|+|++++|...+..  +-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence            699999999999999888766  45654 678876532      23446788999988  7999999999543322  21


Q ss_pred             HHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      ...+   +.| .+++.-- --++-+.+.|.++.++.+..
T Consensus        80 ~~~l---~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   80 KKAL---EAGKHVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             HHHH---HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             HHHH---HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence            2233   333 4555521 22445666677777665543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.05  E-value=0.0025  Score=59.50  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      -+++||||.|..|+..++.+.. +.. +|.+|+|++++..          +  .....+.++++.+||+|+.++|.+   
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~---  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD---  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence            4689999999999988887764 455 5999999876422          1  223568999999999999998854   


Q ss_pred             hcccCHHHHhccCCCcEEEEcCC
Q 021388          210 RHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .-++..+   .+|||+.+.-+|.
T Consensus       194 ~P~~~~~---~l~pg~hV~aiGs  213 (301)
T PRK06407        194 TPIFNRK---YLGDEYHVNLAGS  213 (301)
T ss_pred             CcEecHH---HcCCCceEEecCC
Confidence            3566555   4578988777764

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.98  E-value=0.0025  Score=60.64  Aligned_cols=85  Identities=16%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      -++++|||.|..++..++.+. -+.. +|.+|+|+++...         +  +....++++++++||+|+.++|.+. ..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence            368999999999988877665 4455 5999999876422         1  2235789999999999999997432 12


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      -++..+   .+|||+.+.-+|.
T Consensus       208 Pvl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             ceecHH---HcCCCcEEEecCC
Confidence            456554   4589998887663

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.97  E-value=0.0013  Score=61.04  Aligned_cols=36  Identities=36%  Similarity=0.574  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|+.+||+|+|.+|+--.+.+++||++|+++|++..
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence            899999999999999999999999999999998863

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.93  E-value=0.011  Score=55.65  Aligned_cols=90  Identities=8%  Similarity=0.077  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCc-----------------------cc-------------cccCCC--HHHHhhcC
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPN-----------------------LK-------------YKYYPS--VVELASNC  196 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~-----------------------~~-------------~~~~~~--l~e~~~~a  196 (313)
                      ||..||..+...|++|..||++++..                       .+             .....+  ..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            78999999999999999999987310                       00             001112  55788999


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      |+|+-++|...+.+..+-+++.+.+++++++  ++.-+......|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999999888878888889999999  44555567778887774

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.93  E-value=0.0004  Score=61.38  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----------------------c-----------cccCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----------------------K-----------YKYYP  187 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----------------------~-----------~~~~~  187 (313)
                      ..-+.|+|||.|.||..||+.....|+.|+.+|++++...                       +           .....
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            3446899999999999999999999999999998775210                       0           00124


Q ss_pred             CHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388          188 SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH  263 (313)
Q Consensus       188 ~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~  263 (313)
                      ++.++++++|+|+=++-.+.+.+.-+-+++=...|+.+++ -|+|.-   ...++..+++..... ++|-.|.+-|.
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl---~lt~ia~~~~~~srf-~GlHFfNPvPv  161 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL---SLTDIASATQRPSRF-AGLHFFNPVPV  161 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccce---eHHHHHhhccChhhh-ceeeccCCchh
Confidence            5667778888887665544333322223333446777776 455543   456677788776654 68888877774

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.92  E-value=0.009  Score=58.57  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=73.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC--Cccc-------------------cc-----cCCCHHHH
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK--PNLK-------------------YK-----YYPSVVEL  192 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~--~~~~-------------------~~-----~~~~l~e~  192 (313)
                      .++.|++|+|.|+|++|+.+|+.|..+|++|++. |.+..  .+.|                   +.     ...+.+++
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i  307 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSP  307 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccc
Confidence            4689999999999999999999999999999877 52211  0000                   00     00122333


Q ss_pred             h-hcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          193 A-SNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       193 ~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      + .+||+++-|..     .+.|+.+....++  .-.+++-.+.+.+  +.+-.+.|.++.+. ++=|+
T Consensus       308 ~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~-~vPD~  367 (445)
T PRK09414        308 WSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL-FAPGK  367 (445)
T ss_pred             cccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE-EECch
Confidence            3 36999887664     4567787777774  3456677777777  34455778888776 34454

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.88  E-value=0.0079  Score=54.83  Aligned_cols=60  Identities=17%  Similarity=0.239  Sum_probs=45.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHh-CCCCEE-EecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEA-FSCPIN-YYSRTEKPNL-----KYKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+|+|+|+ |.||+.+++.+.. -++++. ++|+..+...     +.....+++++++.+|+|+.++|
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            48999998 9999999999886 468865 5777654321     22345789998889999997775

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.88  E-value=0.036  Score=48.81  Aligned_cols=41  Identities=12%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             cccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          138 LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ...++.|+++.|||.|.+|..-++.|..+|++|.++++...
T Consensus         3 ~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         3 VFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             eEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            44579999999999999999999999999999999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.88  E-value=0.004  Score=58.08  Aligned_cols=58  Identities=17%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------c----ccCCCHHHHhhcCCEEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------Y----KYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~----~~~~~l~e~~~~aDvV~~~l  203 (313)
                      ++|+|||.|.||..+|..+...|. +|..+|+.++...+             .    ....+. +.+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence            689999999999999999987665 89999986643211             0    012345 4578999999986

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.86  E-value=0.0087  Score=50.51  Aligned_cols=89  Identities=11%  Similarity=0.180  Sum_probs=65.9

Q ss_pred             CCCEEEEEc--CChHHHHHHHHHHhCCCCEEEecCCCC--Cc----------------cccccCCCHHHHhhcCCEEEEe
Q 021388          143 TGKTVGIIG--LGRIGMAVAKRAEAFSCPINYYSRTEK--PN----------------LKYKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       143 ~g~~igiiG--~G~iG~~iA~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .|++|++||  .+++.++++..+..||+.+.+..+..-  +.                .......++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            478999999  389999999999999999988887652  11                0123457899999999999876


Q ss_pred             cCC----Chh-------hhcccCHHHHhccCCCcEEEEcC
Q 021388          203 CPL----TEE-------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       203 lp~----~~~-------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .-.    .+.       ....++++.++.+|++++|.-+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            654    111       11456888999999999988876

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.85  E-value=0.0045  Score=57.41  Aligned_cols=37  Identities=19%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTE  177 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~  177 (313)
                      .+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            36789999999999999999999999997 99999975

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.81  E-value=0.0024  Score=60.37  Aligned_cols=58  Identities=26%  Similarity=0.402  Sum_probs=47.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-------ccC---CCHHHHhhcCCEEEE
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-------KYY---PSVVELASNCHILVV  201 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-------~~~---~~l~e~~~~aDvV~~  201 (313)
                      +++|||||-|..|+-|+...+.+|++|++.|+.++..+.-       ..+   ..+.++++.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999999999999999988754321       112   247789999999865

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.79  E-value=0.0018  Score=53.55  Aligned_cols=105  Identities=19%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----ccccc--------------cCCCHHHHhhcCCEEEEecCCChh
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYK--------------YYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----~~~~~--------------~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      |.|+|.|.||.-+|.+|+..|++|..+.|....    ..+..              ...+..+....+|+|++++.... 
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~-   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ-   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG-
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc-
Confidence            689999999999999999999999999887610    00100              01112346788999999997443 


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG  254 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~  254 (313)
                      +...+ +.....+++++.++-.--| +-..+.+.+.+...++.++.
T Consensus        80 ~~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   80 LEQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             HHHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             hHHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            44444 4466677788777776666 45566777777566665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.78  E-value=0.0055  Score=57.72  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +..++|+|||.|.||..+|..+...|. +|..+|++++...+                 .....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999988785 89999987763210                 0112455 5679999999976


Q ss_pred             CCC--h--------------hhhcccCHH---HHhccCCCcEEEEcCCCccccHHHHHHHHH--hCCeeEEE
Q 021388          204 PLT--E--------------ETRHIINRE---VIDALGPKGVLINIGRGPHVDERELVSALV--EGRLGGAG  254 (313)
Q Consensus       204 p~~--~--------------~t~~li~~~---~l~~mk~ga~lIn~~rg~~vd~~al~~al~--~~~l~ga~  254 (313)
                      -..  +              .+..++ .+   .+....|.+++++++.-.-+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            221  1              111111 12   233345777999988543333334433322  24566655

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.77  E-value=0.0093  Score=54.05  Aligned_cols=88  Identities=18%  Similarity=0.323  Sum_probs=59.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK  224 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g  224 (313)
                      -++-|+|.|.+++++++.++.+|++|.++|.+++....        .....++.+....|          .+.+..+.++
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~~~  162 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--------DLPDGVATLVTDEP----------EAEVAEAPPG  162 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--------cCCCCceEEecCCH----------HHHHhcCCCC
Confidence            47899999999999999999999999999977541111        01123333222111          2233335567


Q ss_pred             cEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          225 GVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       225 a~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      +.+|=+.++.-.|.+.|..+|++...
T Consensus       163 t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       163 SYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            77777778888888888888855444

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=96.76  E-value=0.0049  Score=55.54  Aligned_cols=80  Identities=18%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhCCCCEEEecCCCCCc----------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388          156 GMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG  225 (313)
Q Consensus       156 G~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  225 (313)
                      |..||-.+...|+.|...+++.+-.          .|....++-.+..+.+.+.++..|....|.++. ++.+..++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            6788999999999999999877532          234445566788999999999999998888775 88999999999


Q ss_pred             EEEEcCCCccc
Q 021388          226 VLINIGRGPHV  236 (313)
Q Consensus       226 ~lIn~~rg~~v  236 (313)
                      ++.|+.+-+.+
T Consensus       112 VicnTCT~sp~  122 (340)
T COG4007         112 VICNTCTVSPV  122 (340)
T ss_pred             EecccccCchh
Confidence            99999987654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.73  E-value=0.0029  Score=50.79  Aligned_cols=83  Identities=16%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             EEEEEc-CChHHHHHHHHHHh-CCCCE-EEecCCCCCc--cc--------c---ccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          146 TVGIIG-LGRIGMAVAKRAEA-FSCPI-NYYSRTEKPN--LK--------Y---KYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~~-~G~~V-~~~~~~~~~~--~~--------~---~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      +|+||| .|.+|+.+.++|.. ..+++ .++.++....  ..        .   .......+.+.++|+|++|+|.... 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence            689999 99999999999986 33453 4455544111  00        0   0111122445999999999984322 


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCC
Q 021388          210 RHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .... ...   +++|..+||.+..
T Consensus        80 ~~~~-~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   80 KELA-PKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHH-HHH---HHTTSEEEESSST
T ss_pred             HHHH-HHH---hhCCcEEEeCCHH
Confidence            2221 222   5789999998853

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.71  E-value=0.0019  Score=59.69  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc----------ccC---CCHHHHhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY----------KYY---PSVVELASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~----------~~~---~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +.|+++.|||.|.+|++++..|...|+ +|.+++|+.++....          ...   .++.+.+.++|+|+.++|..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            678899999999999999999999998 599999986532210          001   12234456788888888754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.70  E-value=0.0042  Score=54.52  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45899999999999999999999999998 68888865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.66  E-value=0.014  Score=52.90  Aligned_cols=104  Identities=18%  Similarity=0.252  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe--------cCCCCC---------cccc--ccC----------CCHH-
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--------SRTEKP---------NLKY--KYY----------PSVV-  190 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~--------~~~~~~---------~~~~--~~~----------~~l~-  190 (313)
                      ++.|+++.|-|+|++|+.+|+.|...|++|.+.        |+..-.         ..+.  ..+          .+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        322110         0001  101          1121 


Q ss_pred             HHh-hcCCEEEEecCCChhhhcccCHHHHh-ccCCCcEE-EEcCCCccccHHHHHHHHHhCCee
Q 021388          191 ELA-SNCHILVVACPLTEETRHIINREVID-ALGPKGVL-INIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       191 e~~-~~aDvV~~~lp~~~~t~~li~~~~l~-~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +++ .+||+++.|.     ..+.|+.+... .++.++.+ +-.+.+.+ ..++.. .|+++.+.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence            444 5899999884     45578888888 88777655 45555555 555555 88888886

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.66  E-value=0.0035  Score=52.90  Aligned_cols=41  Identities=27%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          136 YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      +|...++.|++|.|||.|.+|...++.|...|++|.++++.
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            34567899999999999999999999999999999999754

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.62  E-value=0.17  Score=46.52  Aligned_cols=177  Identities=16%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY  172 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~  172 (313)
                      +|=-+++-+|+.+|-.                   +..|...+|.|+|.|.-|-.+|+.+...    |.       +++.
T Consensus         4 Ta~V~lAgllnAlk~~-------------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~   64 (279)
T cd05312           4 TAAVALAGLLAALRIT-------------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWL   64 (279)
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEE
Confidence            4556777788887733                   3568889999999999999999999876    87       6888


Q ss_pred             ecCCCC----C-cc-c-----cc-----cCCCHHHHhh--cCCEEEEecCCChhhhcccCHHHHhccC---CCcEEEEcC
Q 021388          173 YSRTEK----P-NL-K-----YK-----YYPSVVELAS--NCHILVVACPLTEETRHIINREVIDALG---PKGVLINIG  231 (313)
Q Consensus       173 ~~~~~~----~-~~-~-----~~-----~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~ga~lIn~~  231 (313)
                      +|+..-    . .. .     ..     ...+|.|+++  ++|+++-+--    .-++++++.++.|.   +.+++.=.|
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLS  140 (279)
T cd05312          65 VDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALS  140 (279)
T ss_pred             EcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            887531    0 00 0     11     2347999999  8898875431    23689999999998   899999999


Q ss_pred             CCccc---cHHHHHHHHHhCC-eeEEEecCCCCCCCCC-CcccCCCceEEccCCCCCcHHH-----HHHHHHHHHHHHHH
Q 021388          232 RGPHV---DERELVSALVEGR-LGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVET-----RKTMADLVLGNLEA  301 (313)
Q Consensus       232 rg~~v---d~~al~~al~~~~-l~ga~lDV~~~Ep~~~-~~L~~~pnv~lTPH~a~~t~~~-----~~~~~~~~~~nl~~  301 (313)
                      .-..-   ..++.++ ..+|+ |.+.+...-..+.... ...=+..|+++=|=++-..-.+     -+.|...+++-|.+
T Consensus       141 NPt~~~E~~pe~a~~-~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~  219 (279)
T cd05312         141 NPTSKAECTAEDAYK-WTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS  219 (279)
T ss_pred             CcCCccccCHHHHHH-hhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence            87652   2233333 23455 5433322111111000 1345688999999876443222     25566666666666


Q ss_pred             HHc
Q 021388          302 HFL  304 (313)
Q Consensus       302 ~~~  304 (313)
                      +..
T Consensus       220 ~~~  222 (279)
T cd05312         220 LVT  222 (279)
T ss_pred             hCC
Confidence            654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.62  E-value=0.022  Score=56.13  Aligned_cols=109  Identities=27%  Similarity=0.339  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcC----ChHHHHHHHHHHhCCC--CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          142 FTGKTVGIIGL----GRIGMAVAKRAEAFSC--PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       142 l~g~~igiiG~----G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +.-++|+|||.    |++|..+.+.++..|+  +|+..++......+...+.+++++-...|++++++|. +.+..++ +
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l-~   82 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV-E   82 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHH-H
Confidence            55689999999    8899999999999888  6888888776666777788999998889999999993 2334443 3


Q ss_pred             HHHhccCCCcEE-EEcCCCc-----cccHHHHHHHHHhCCeeEE
Q 021388          216 EVIDALGPKGVL-INIGRGP-----HVDERELVSALVEGRLGGA  253 (313)
Q Consensus       216 ~~l~~mk~ga~l-In~~rg~-----~vd~~al~~al~~~~l~ga  253 (313)
                      +..+ .+-.+++ +..+-++     ...++++.+..+++.++-.
T Consensus        83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            3333 3444444 4333222     2346788888888877743

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.61  E-value=0.0081  Score=56.12  Aligned_cols=86  Identities=21%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-------------c--c-cCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-------------Y--K-YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-------------~--~-~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.+|+.+|..|...|.  +|..+|+..+...+             .  . ...+. +.+++||+|+++....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence            489999999999999999998884  69999987664221             0  0 11233 4578999999998642


Q ss_pred             hh---hhc-cc--C-------HHHHhccCCCcEEEEcC
Q 021388          207 EE---TRH-II--N-------REVIDALGPKGVLINIG  231 (313)
Q Consensus       207 ~~---t~~-li--~-------~~~l~~mk~ga~lIn~~  231 (313)
                      ..   ++. ++  |       ...+....|.+++++++
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            11   111 11  1       12234456788999987

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.013  Score=57.76  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------cccccC--CCHHHHhhcCCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYY--PSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|+.....          .+....  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            3678999999999999999999999999999999764311          121111  1223445789998887 54332


Q ss_pred             hhc-----------ccCH-HHHhcc-CCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          209 TRH-----------IINR-EVIDAL-GPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       209 t~~-----------li~~-~~l~~m-k~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      +..           ++++ +.+... +...+-|--+.|.....+-+...|+....
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            221           1221 222222 32345566667988888888888876544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.56  E-value=0.024  Score=52.61  Aligned_cols=109  Identities=13%  Similarity=0.207  Sum_probs=78.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC--CCCccccccCCCHHHHhhcCCEEEEecCCChhhhc----------
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT--EKPNLKYKYYPSVVELASNCHILVVACPLTEETRH----------  211 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~----------  211 (313)
                      |++++|||--.--..+++.|...|++|..|--.  ...-.+.....+.++.++++|+|++=+|.+.....          
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            689999999999999999999999998766533  12222444455566679999999999997655321          


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                      .++++.++.++++++ +-+|    ++..++.++.++..+.  ..|.++
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence            246889999997665 4444    3446676788888887  665443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.56  E-value=0.0061  Score=57.84  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE  177 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~  177 (313)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45999999999999999999999999998 688888753

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.55  E-value=0.071  Score=48.37  Aligned_cols=178  Identities=15%  Similarity=0.138  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-----------CEEE
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-----------PINY  172 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-----------~V~~  172 (313)
                      +|=-+++-+|+.+|-.                   +..|...+|.|+|.|..|-.+|+.+...+.           +++.
T Consensus         4 TaaV~lAgllnAlk~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~   64 (254)
T cd00762           4 TASVAVAGLLAALKVT-------------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWX   64 (254)
T ss_pred             hHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEE
Confidence            4555777788887732                   346888999999999999999999987765           5788


Q ss_pred             ecCCCC----C--cc----c---c----ccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHHHhccC---CCcEEEEc
Q 021388          173 YSRTEK----P--NL----K---Y----KYYPSVVELAS--NCHILVVACPLTEETRHIINREVIDALG---PKGVLINI  230 (313)
Q Consensus       173 ~~~~~~----~--~~----~---~----~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~ga~lIn~  230 (313)
                      +|+..-    .  ..    .   +    ....+|.|+++  +.|+++-.--    ..+++.++.++.|.   +.+++.=.
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaL  140 (254)
T cd00762          65 VDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFAL  140 (254)
T ss_pred             ECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEEC
Confidence            886431    0  00    0   1    11348999999  9998875431    24689999999999   89999999


Q ss_pred             CCCccc---cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHH-----HHHHHHHHHHHHH
Q 021388          231 GRGPHV---DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETR-----KTMADLVLGNLEA  301 (313)
Q Consensus       231 ~rg~~v---d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~-----~~~~~~~~~nl~~  301 (313)
                      |+-..-   ..++.+++=+.+.|.+.+.-.+..+-.... ..-+..|+++-|=++-..-.+.     +.|.-.+++-|.+
T Consensus       141 SNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~  220 (254)
T cd00762         141 SNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIAS  220 (254)
T ss_pred             CCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHh
Confidence            887762   333333332222344333222111110000 2447889999997764433222     4455555555555


Q ss_pred             HHc
Q 021388          302 HFL  304 (313)
Q Consensus       302 ~~~  304 (313)
                      +..
T Consensus       221 ~v~  223 (254)
T cd00762         221 SVT  223 (254)
T ss_pred             hCC
Confidence            543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.54  E-value=0.044  Score=53.74  Aligned_cols=151  Identities=16%  Similarity=0.114  Sum_probs=87.2

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Cccc-----------------------------cccC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLK-----------------------------YKYY  186 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~-----------------------------~~~~  186 (313)
                      +.++.|+++.|=|+|++|+..|+.|..+|++|+ +.|.+..  .+.|                             ....
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            346899999999999999999999999999988 4454410  0000                             0001


Q ss_pred             CCHHH-HhhcCCEEEEecCCChhhhcccCHHHHhcc-CCCcEEEE-cCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388          187 PSVVE-LASNCHILVVACPLTEETRHIINREVIDAL-GPKGVLIN-IGRGPHVDERELVSALVEGRLGGAGLDVFENEPH  263 (313)
Q Consensus       187 ~~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~m-k~ga~lIn-~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~  263 (313)
                       +-++ +--.||+.+-|.     +.+.|+.+..+.+ +.++.+|- .+.+.+ ..+ -.+.|+++.+. ++=|..-+-=-
T Consensus       312 -~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~-~~PD~~aNAGG  382 (454)
T PTZ00079        312 -PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI-FCPGKAANAGG  382 (454)
T ss_pred             -CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE-EEChhhhcCCC
Confidence             1112 224688876554     6778888887766 55655554 445554 444 45677777776 34443321110


Q ss_pred             C-CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          264 V-PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       264 ~-~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      . -+  ++.+  |.   -+..|..++..+++.+++.+...+.+
T Consensus       383 V~vS~~E~~Q--n~---~~~~W~~eeV~~~L~~~M~~~~~~~~  420 (454)
T PTZ00079        383 VAISGLEMSQ--NA---ARLQWTAEEVDEKLREIMKSIFEACV  420 (454)
T ss_pred             eeeehHHhhh--hh---cccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0 01  1222  11   14555556666666666555554443

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.54  E-value=0.0045  Score=60.33  Aligned_cols=106  Identities=13%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-----ccCCCHHHHhhcCCEEEEecCCChhhhc-------
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-----KYYPSVVELASNCHILVVACPLTEETRH-------  211 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~e~~~~aDvV~~~lp~~~~t~~-------  211 (313)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++.......     ......+.+..++|+|+.+.+..+....       
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            4689999999999999999999999999999765422110     0112233445779988877654432111       


Q ss_pred             ---ccCHHHH--hc--cCCC-cEEEEcCCCccccHHHHHHHHHhCC
Q 021388          212 ---IINREVI--DA--LGPK-GVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       212 ---li~~~~l--~~--mk~g-a~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                         ++.+..+  ..  +.+. .+=|--+-|.....+-+.+.|+...
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g  128 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG  128 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence               2222222  11  2122 3456666788888888888887644

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.53  E-value=0.05  Score=52.42  Aligned_cols=146  Identities=18%  Similarity=0.284  Sum_probs=91.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC---Cccc---------------------cccCCCHHHH-h
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK---PNLK---------------------YKYYPSVVEL-A  193 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~---~~~~---------------------~~~~~~l~e~-~  193 (313)
                      +.++.|++|+|=|+|++|+..|+.|...|.+|++.|.+..   ...|                     ..... -+++ -
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-cccccc
Confidence            3358999999999999999999999999999998876554   1111                     11111 2343 3


Q ss_pred             hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCc
Q 021388          194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLEN  273 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pn  273 (313)
                      -.||+.+-|     .+.+.|+.+...+++-. +++-.+.+++- .++--..+ +..+. ++=|.          |.+.-.
T Consensus       281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~-erGIl-~~PD~----------laNAGG  341 (411)
T COG0334         281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILL-ERGIL-VVPDI----------LANAGG  341 (411)
T ss_pred             ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHH-HCCCE-EcChh----------hccCcC
Confidence            468877543     36778999988988866 77788888765 44433333 44454 23333          222222


Q ss_pred             eEEcc--------CCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021388          274 VVLMP--------HVGSGTVETRKTMADLVLGNLEAHFL  304 (313)
Q Consensus       274 v~lTP--------H~a~~t~~~~~~~~~~~~~nl~~~~~  304 (313)
                      |+.+=        -..|..++..+++..++.+..+.+.+
T Consensus       342 V~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~  380 (411)
T COG0334         342 VIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQ  380 (411)
T ss_pred             eeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            22221        11244556677777777777666654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.51  E-value=0.0055  Score=57.03  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=42.0

Q ss_pred             EEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------c----ccCCCHHHHhhcCCEEEEecC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------Y----KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~----~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      |+|||.|.||..+|..+...|. +|..+|++++...+             .    ....+. +.+++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999986665 99999987653110             0    012344 45899999999873

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.47  E-value=0.0035  Score=56.01  Aligned_cols=64  Identities=22%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-------ccc-------CCCHHHH-hhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-------YKY-------YPSVVEL-ASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-------~~~-------~~~l~e~-~~~aDvV~~~lp~~~~  208 (313)
                      +++.|+|+|.+|..+|+.|...|+.|...|+.++....       ...       ...|.++ +.++|+++.++..+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            57999999999999999999999999999987653211       110       1224554 7889999998886544

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.47  E-value=0.0056  Score=48.01  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHhCCCCEEEecCCCCCcc--------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388          154 RIGMAVAKRAEAFSCPINYYSRTEKPNL--------KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG  225 (313)
Q Consensus       154 ~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  225 (313)
                      +-+..+++.|+..|++|.+||+......        +.....++++.++.+|+|+++++..+ -+.+--++....|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCHHHHHHhcCCCC
Confidence            4567899999999999999999875322        23345689999999999999987443 22232345667788999


Q ss_pred             EEEEc
Q 021388          226 VLINI  230 (313)
Q Consensus       226 ~lIn~  230 (313)
                      +++|+
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.39  E-value=0.022  Score=52.81  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE  177 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~  177 (313)
                      .+.|+++.|+|.|..+++++..|...|. +|.+++|+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4678999999999999999999998897 699999985

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.39  E-value=0.028  Score=52.56  Aligned_cols=62  Identities=11%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCCCccc---cccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEKPNLK---YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +.|++|+++|=   |++.++++..+..+|+++.+..|..-....   .....++++.++.+|+|....
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECC
Confidence            78899999988   589999999999999999988875432211   234678999999999987743

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.37  E-value=0.014  Score=54.71  Aligned_cols=107  Identities=21%  Similarity=0.266  Sum_probs=65.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ..+|+|||.|.+|..+|-.|...|.  ++..+|+..+...+                .....+.++ +++||+|+++.-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence            3599999999999999999987665  58899987653211                011234554 8999999997632


Q ss_pred             --Ch-hhhc-cc--CH-------HHHhccCCCcEEEEcCCCccccHHH--HHHH--HHhCCeeEE
Q 021388          206 --TE-ETRH-II--NR-------EVIDALGPKGVLINIGRGPHVDERE--LVSA--LVEGRLGGA  253 (313)
Q Consensus       206 --~~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg~~vd~~a--l~~a--l~~~~l~ga  253 (313)
                        .+ .++. ++  |.       +.+....|.+++++++-  .+|.-+  +.+.  +...++.|.
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN--P~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN--PVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC--hHHHHHHHHHHHhCCCHHHEEec
Confidence              21 1221 11  11       23334468899999983  344322  3332  334555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.35  E-value=0.0085  Score=58.60  Aligned_cols=107  Identities=12%  Similarity=0.058  Sum_probs=67.4

Q ss_pred             CEEEEEcCChHHHHHHH---HH---HhCCCCEEEecCCCCCcc-----------------ccccCCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIGLGRIGMAVAK---RA---EAFSCPINYYSRTEKPNL-----------------KYKYYPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~e~~~~aDvV~~  201 (313)
                      .+|+|||.|.+|.+.+-   .+   ...|.+|..||++++...                 ......++++.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998555   22   334678999999875211                 11234578899999999999


Q ss_pred             ecCCChh---hh--------cc---------------------cCHHHHhccC---CCcEEEEcCCCccccHHHHHHHHH
Q 021388          202 ACPLTEE---TR--------HI---------------------INREVIDALG---PKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       202 ~lp~~~~---t~--------~l---------------------i~~~~l~~mk---~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      ++|....   .+        ++                     +-.+..+.++   |.++++|.+...-+-..++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            9983110   00        00                     0123333333   688888888776666666665554


Q ss_pred             hCCeeE
Q 021388          247 EGRLGG  252 (313)
Q Consensus       247 ~~~l~g  252 (313)
                       .++.|
T Consensus       161 -~rviG  165 (423)
T cd05297         161 -IKTVG  165 (423)
T ss_pred             -CCEEE
Confidence             34443

linked to 3D####ucture

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.31  E-value=0.0061  Score=53.93  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----------cccCCCHHHHhhcCCEEEEecCCC
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +...++.|+++.|||-|.+|..=++.+...|++|+++++...+...          .....+.+ .+..+++|+.+++..
T Consensus         5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~   83 (210)
T COG1648           5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDE   83 (210)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCH
Confidence            4556799999999999999999999999999999999987632110          00111222 233477777776533


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEc
Q 021388          207 EETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      +     +|++.+...++-.++||+
T Consensus        84 ~-----ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          84 E-----LNERIAKAARERRILVNV  102 (210)
T ss_pred             H-----HHHHHHHHHHHhCCceec
Confidence            2     345555555555566665

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.31  E-value=0.024  Score=51.90  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHHh-CCCCEE-EecCCCCCc-------------cccccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEA-FSCPIN-YYSRTEKPN-------------LKYKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      .+|+|+| +|.||+.+++.+.. -++++. ++|+.....             .+.....+++++...+|+|+.+.|  |.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~   79 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE   79 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence            3799999 69999999999875 578865 567432111             122334678888667999999886  32


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCe
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRL  250 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l  250 (313)
                      ...   +-....++.|.-+|-...|-- -+.+.|.++.++..+
T Consensus        80 ~~~---~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~  119 (266)
T TIGR00036        80 GVL---NHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI  119 (266)
T ss_pred             HHH---HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence            221   223334455544444334432 234445666566443

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.29  E-value=0.017  Score=54.99  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhC-CCCEE-EecCCCC--Ccc--------cc-c-cC--CCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAF-SCPIN-YYSRTEK--PNL--------KY-K-YY--PSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~-G~~V~-~~~~~~~--~~~--------~~-~-~~--~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|+|. |.+|+.+++.|... +.++. .++++..  +..        +. . ..  .+.++++.++|+|++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            47999998 99999999999977 56777 4454331  111        10 0 11  144566668999999999542


Q ss_pred             hhhcccCHHHHhc-cCCCcEEEEcCCC
Q 021388          208 ETRHIINREVIDA-LGPKGVLINIGRG  233 (313)
Q Consensus       208 ~t~~li~~~~l~~-mk~ga~lIn~~rg  233 (313)
                      .      .+.... .+.|..+||.|-.
T Consensus        81 s------~~~~~~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        81 S------AELAPELLAAGVKVIDLSAD  101 (346)
T ss_pred             H------HHHHHHHHhCCCEEEeCChh
Confidence            2      333333 2578999999843

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.27  E-value=0.029  Score=52.39  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccc-----------cCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYK-----------YYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~-----------~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|+|.|.||.-+|-.|...|.+|..++|..+.      ..|..           ......+.....|+|++++-.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            57999999999999999999999999999986421      11110           0011112245789999998644 


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388          208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG  254 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~  254 (313)
                      ++...+ +...+.+.+++.++-.--| +-.++.+.+.+.+.++.++.
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence            344333 5566778888887777555 34456677777666666543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.25  E-value=0.0093  Score=56.05  Aligned_cols=89  Identities=17%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c----ccCCCHHHHhhcCCEEEEecCC-
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y----KYYPSVVELASNCHILVVACPL-  205 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~----~~~~~l~e~~~~aDvV~~~lp~-  205 (313)
                      .+++|+|||.|.+|..+|-.+...|.  ++..+|++.+...+          +    ....+..+.+++||+|+++.-. 
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            56799999999999999999998887  69999987653221          0    0011223558999999997643 


Q ss_pred             -Ch-hhhc-cc--C----HHHHh---ccCCCcEEEEcC
Q 021388          206 -TE-ETRH-II--N----REVID---ALGPKGVLINIG  231 (313)
Q Consensus       206 -~~-~t~~-li--~----~~~l~---~mk~ga~lIn~~  231 (313)
                       .+ .++. ++  |    ++...   .-.+.+++++++
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence             21 1221 11  1    22222   234688999987

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.24  E-value=0.022  Score=55.39  Aligned_cols=86  Identities=17%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          142 FTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       142 l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      +.|++|+|+|+          .+-...+++.|...|++|.+||+......  ......++++.++.+|+|+++....+ -
T Consensus       311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-~  389 (411)
T TIGR03026       311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-F  389 (411)
T ss_pred             ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-H
Confidence            68899999998          45778899999999999999999754322  11124688899999999999987543 1


Q ss_pred             hcccCHHHHh-ccCCCcEEEEc
Q 021388          210 RHIINREVID-ALGPKGVLINI  230 (313)
Q Consensus       210 ~~li~~~~l~-~mk~ga~lIn~  230 (313)
                      +. ++-+.+. .|+ ..+++|+
T Consensus       390 ~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       390 KD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             hc-cCHHHHHHhcC-CCEEEeC
Confidence            22 3433343 454 5578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.21  E-value=0.011  Score=48.74  Aligned_cols=85  Identities=18%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcE
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV  226 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~  226 (313)
                      +-|+|.|.+|+++++.++.+|++|.++|++++.             +..++-+ .+.+. ++   +.  +.+ .+.+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~-~~~~~-~~---~~--~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEV-ICIPP-DD---IL--EDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEE-ECSHH-HH---HH--HHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCcc-EecCh-HH---HH--hcc-CCCCCeE
Confidence            468999999999999999999999999987531             1234442 22221 11   10  111 4566666


Q ss_pred             EEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388          227 LINIGRGPHVDERELVSALVEGRLGGAG  254 (313)
Q Consensus       227 lIn~~rg~~vd~~al~~al~~~~l~ga~  254 (313)
                      +| +.++.-.|.+.|.++|+. ...+.+
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            66 788888898888888877 444333

>PRK11579 putative oxidoreductase; Provisional

Probab=96.21  E-value=0.021  Score=54.11  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             CEEEEEcCChHHHH-HHHHHHh-CCCCEE-EecCCCCCcc----ccccCCCHHHHhh--cCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEA-FSCPIN-YYSRTEKPNL----KYKYYPSVVELAS--NCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~-~G~~V~-~~~~~~~~~~----~~~~~~~l~e~~~--~aDvV~~~lp~~~~  208 (313)
                      .++||||+|.||+. .+..++. -++++. ++|++++...    +...+.+++++++  +.|+|++++|...+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            48999999999985 5666654 367765 5777654321    2234678999986  57999999995443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.18  E-value=0.0094  Score=55.78  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=45.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCccc-------cc--------cCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPNLK-------YK--------YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.+|..+|..|...|  .+|..+|++.+...+       ..        ...+. +.+++||+|+++.+..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            47999999999999999999888  479999987653221       00        01233 5589999999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.17  E-value=0.021  Score=53.56  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=63.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHh-------CCCCEEEecCCCC--C------------------------ccccccCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEA-------FSCPINYYSRTEK--P------------------------NLKYKYYPS  188 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~-------~G~~V~~~~~~~~--~------------------------~~~~~~~~~  188 (313)
                      -.-++|+|||.|+.|+.+|+.+..       |..+|..|-+...  .                        +....+.++
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            344789999999999999998863       3334554432111  1                        001123568


Q ss_pred             HHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          189 VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       189 l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      +.+.+.+||+++..+|-+.- .. +-+++....|+++..|....|
T Consensus        99 l~ea~~dADilvf~vPhQf~-~~-ic~~l~g~vk~~~~aISL~KG  141 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQFI-PR-ICEQLKGYVKPGATAISLIKG  141 (372)
T ss_pred             HHHHhccCCEEEEeCChhhH-HH-HHHHHhcccCCCCeEEEeecc
Confidence            99999999999999995432 22 347788899999999998877

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.12  E-value=0.015  Score=56.97  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=47.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccc-------cCCCHHHH-hhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYK-------YYPSVVEL-ASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~-------~~~~l~e~-~~~aDvV~~~lp~~~~  208 (313)
                      +++.|+|+|.+|+.+++.|...|++|.+++++++..      .+..       ....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            478999999999999999999999999999866421      1111       11234455 7889999999986544

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.038  Score=54.18  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------ccc--cCCCHHHHhhcCCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------KYK--YYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      .+.++++.|+|.|.+|.++|+.|...|++|.++|+......          +..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            36789999999999999999999999999999998752211          111  112233556789999887643333


Q ss_pred             hhccc----------C-HHHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          209 TRHII----------N-REVIDA-LGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       209 t~~li----------~-~~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ...+.          . .+.+.. .+...+-|--+.|.....+-+.+.|+..
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            22111          1 112222 2322344556678888888888888764

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.11  E-value=0.2  Score=52.29  Aligned_cols=157  Identities=11%  Similarity=0.117  Sum_probs=108.1

Q ss_pred             CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388           90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-  168 (313)
                      +|++.|.. .++  +|=-+++-+++.+|-.                   +..+...+|.|.|.|.-|-.+++.|...|. 
T Consensus       153 ~ip~f~DD-~~G--Ta~v~lA~l~na~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  210 (752)
T PRK07232        153 DIPVFHDD-QHG--TAIISAAALLNALELV-------------------GKKIEDVKIVVSGAGAAAIACLNLLVALGAK  210 (752)
T ss_pred             CCCeeccc-cch--HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence            68999984 443  5556777888887733                   456888999999999999999999999998 


Q ss_pred             --CEEEecCCCC----C-c--cc-----c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          169 --PINYYSRTEK----P-N--LK-----Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       169 --~V~~~~~~~~----~-~--~~-----~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        +++.+|+..-    . .  ..     +  ....+|.|+++.+|+++- +.    +.++++++.++.|.+.+++.=.+.
T Consensus       211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG-~s----~~g~~~~~~v~~M~~~piifalsN  285 (752)
T PRK07232        211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG-LS----AAGVLTPEMVKSMADNPIIFALAN  285 (752)
T ss_pred             cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE-cC----CCCCCCHHHHHHhccCCEEEecCC
Confidence              6888886431    1 0  00     1  123589999999998764 33    247899999999999999999998


Q ss_pred             CccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCC
Q 021388          233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGS  282 (313)
Q Consensus       233 g~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~  282 (313)
                      ...--..+.+.....+.+.+.+     ..-    .-=|..|+++-|-++-
T Consensus       286 P~~E~~p~~a~~~~~~~i~atG-----rs~----~pnQ~NN~~~FPgi~~  326 (752)
T PRK07232        286 PDPEITPEEAKAVRPDAIIATG-----RSD----YPNQVNNVLCFPYIFR  326 (752)
T ss_pred             CCccCCHHHHHHhcCCEEEEEC-----CcC----CCCcccceeecchhhH
Confidence            7753222222333334455333     111    1235778888886653

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.09  E-value=0.013  Score=52.37  Aligned_cols=147  Identities=16%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC-------------ccc-------------------ccc-
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP-------------NLK-------------------YKY-  185 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~-------------~~~-------------------~~~-  185 (313)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-.             ..+                   ... 
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 57777643210             011                   000 


Q ss_pred             -----CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          186 -----YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       186 -----~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                           ..++.++++++|+|+.|+. +..++..+++...+   .+.-+|+++-.+               ..|.. -++.+
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~g---------------~~g~v-~~~~p  156 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVLG---------------FEGQV-TVFIP  156 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEecc---------------CEEEE-EEECC
Confidence                 1224467788998887765 55666666554433   344556654221               12211 11211


Q ss_pred             C--CCCCCcccCC-Cce-EEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          261 E--PHVPEELFGL-ENV-VLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       261 E--p~~~~~L~~~-pnv-~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      .  |- ..-++.. +.. .-++..++.......-+..+++..+.+++.|.+
T Consensus       157 ~~~~c-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~  206 (228)
T cd00757         157 GEGPC-YRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG  206 (228)
T ss_pred             CCCCC-ccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence            1  10 0001100 000 112233444445566677888888889998774

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.08  E-value=0.018  Score=55.49  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhC-CCCEEEecCCCCCcc--c--c--------ccCCCHHH-HhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAF-SCPINYYSRTEKPNL--K--Y--------KYYPSVVE-LASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~--~--~--------~~~~~l~e-~~~~aDvV~~~lp~~  206 (313)
                      -..++|+|+|. |.+|+.+.+.|... +++|..+.+......  .  .        ....+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            45568999997 89999999999877 678877654332110  0  0        00112222 247899999999853


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCccccHHHH
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al  241 (313)
                            ...++...|+.|..+||.|..-..+.++.
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~  144 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAE  144 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence                  23445555667899999996655555443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.07  E-value=0.04  Score=52.31  Aligned_cols=107  Identities=18%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC----------CCCEE-EecCCCC--Ccc--------------c-cc------cCCCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF----------SCPIN-YYSRTEK--PNL--------------K-YK------YYPSVV  190 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~----------G~~V~-~~~~~~~--~~~--------------~-~~------~~~~l~  190 (313)
                      .+|||+|+|.||+.+++.+...          +++|. +.|++..  ...              + ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            3799999999999999998754          45654 4464321  000              0 00      123778


Q ss_pred             HHhh--cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee
Q 021388          191 ELAS--NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG  251 (313)
Q Consensus       191 e~~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~  251 (313)
                      +++.  +.|+|+.++|...++...--.-....|+.|.-+|-...+.+ ...++|.++.++....
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            8874  68999999986544322211223566777877776544443 3457788888777664

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.00  E-value=0.013  Score=57.48  Aligned_cols=119  Identities=22%  Similarity=0.307  Sum_probs=76.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccccC--CCHHHHhhcCCEEEEecCCChhhh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKYY--PSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      +.+++|.|+|+|.-|.++|+.|+..|++|.++|.++...         .+....  .-..+....+|+|+.. |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            459999999999999999999999999999999766541         111111  1112567889999876 2222111


Q ss_pred             c-----------ccC-HHHHhcc-CCCcEE-EEcCCCccccHHHHHHHHHhCC--------eeEEEecCCCCC
Q 021388          211 H-----------IIN-REVIDAL-GPKGVL-INIGRGPHVDERELVSALVEGR--------LGGAGLDVFENE  261 (313)
Q Consensus       211 ~-----------li~-~~~l~~m-k~ga~l-In~~rg~~vd~~al~~al~~~~--------l~ga~lDV~~~E  261 (313)
                      .           ++. -+++... ++..++ |--+.|....+.-+...|++..        |...++|+.+.+
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~  156 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA  156 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence            1           222 2334443 234455 5555688777777777776644        566678888763

>PRK12862 malic enzyme; Reviewed

Probab=96.00  E-value=0.23  Score=52.06  Aligned_cols=158  Identities=11%  Similarity=0.108  Sum_probs=108.3

Q ss_pred             CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388           90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-  168 (313)
                      +|++.|.. .++  +|=.+++-+++.+|-.                   +..+...+|.|.|.|.-|-.+|+.+...|. 
T Consensus       161 ~ip~f~DD-~~G--Ta~v~la~l~~a~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHDD-QHG--TAIIVAAALLNGLKLV-------------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEecC-ccc--HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            69999984 433  5556777888887733                   456888999999999999999999999998 


Q ss_pred             --CEEEecCCCC----Cc---cc-----c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          169 --PINYYSRTEK----PN---LK-----Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       169 --~V~~~~~~~~----~~---~~-----~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        +++.+|+..-    ..   ..     +  ....+|.|+++.+|+++-. .    +.++++++.++.|.+.+++.=.|.
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN  293 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGL-S----AAGVLKPEMVKKMAPRPLIFALAN  293 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEeCCC
Confidence              6888885421    10   10     1  1235799999999988653 2    247899999999999999999988


Q ss_pred             CccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCC
Q 021388          233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG  283 (313)
Q Consensus       233 g~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~  283 (313)
                      ...--..+.+.....+.+.+.+     ....    -=|..|+++-|=++-.
T Consensus       294 P~~E~~p~~a~~~~~~~i~atG-----rs~~----p~Q~NN~~~FPgi~~g  335 (763)
T PRK12862        294 PTPEILPEEARAVRPDAIIATG-----RSDY----PNQVNNVLCFPYIFRG  335 (763)
T ss_pred             CcccCCHHHHHHhcCCEEEEEC-----CcCC----CCcccceeeccchhhh
Confidence            7752222222333334455333     1111    2357788888876543

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.98  E-value=0.059  Score=50.32  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCCC-Cc---------ccc--ccCCCHHHHhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTEK-PN---------LKY--KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~~-~~---------~~~--~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +.|.+|+++|-|   ++.++++..+..+|++|.+..|..- ..         .|.  ....++++.++.+|+|..---..
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~  227 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQK  227 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccc
Confidence            789999999995   9999999999999999998877543 11         121  23578999999999987732110


Q ss_pred             h------h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388          207 E------E-----TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       207 ~------~-----t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      +      +     ...-++++.++.++++++|.-+.
T Consensus       228 er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       228 ERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             cccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence            0      0     01234566666677776666443

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.98  E-value=0.015  Score=55.74  Aligned_cols=58  Identities=26%  Similarity=0.401  Sum_probs=44.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-----ccCC---CHHHHhhcCCEEEE
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-----KYYP---SVVELASNCHILVV  201 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-----~~~~---~l~e~~~~aDvV~~  201 (313)
                      .++|||||-|..|+.++..++.+|++|.++|+.+.....  +     ....   .+.++++.+|+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            378999999999999999999999999999987654221  0     0112   36667888998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.96  E-value=0.0084  Score=47.19  Aligned_cols=80  Identities=20%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc----CCC---HHH-HhhcCCEEEEecCCChhhhccc
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY----YPS---VVE-LASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e-~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      |.|+|+|.+|+.+++.|+..+.+|.+.+++++..     .+...    ..+   +++ -+.++|.|+++.+....+.  .
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~--~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL--L   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH--H
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH--H
Confidence            5699999999999999999777899999876531     12111    122   232 2678999999988554433  2


Q ss_pred             CHHHHhccCCCcEEE
Q 021388          214 NREVIDALGPKGVLI  228 (313)
Q Consensus       214 ~~~~l~~mk~ga~lI  228 (313)
                      -...+..+.+...++
T Consensus        79 ~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   79 IALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHCCCCeEE
Confidence            244555555555544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.93  E-value=0.027  Score=52.01  Aligned_cols=104  Identities=21%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc----c------cCCCHHHH--hhcCCEEEEecCCCh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY----K------YYPSVVEL--ASNCHILVVACPLTE  207 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~----~------~~~~l~e~--~~~aDvV~~~lp~~~  207 (313)
                      ...|+++.|+|.|..+++++..|+..|+ +|.+++|+.++....    .      ......++  ..++|+|+.++|..-
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm  202 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM  202 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence            4678999999999999999999999996 699999987642210    0      01112221  226999999998654


Q ss_pred             hhh--c-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          208 ETR--H-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       208 ~t~--~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      .-.  . .++   ...++++.++.|+-=.+. ++.-|..|=+.|
T Consensus       203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            332  1 233   456778888888765543 333343333334

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.93  E-value=0.027  Score=53.47  Aligned_cols=62  Identities=23%  Similarity=0.203  Sum_probs=42.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCCCEEE-ecCCCCCc------------------------cccccCCCHHHHhhcCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSCPINY-YSRTEKPN------------------------LKYKYYPSVVELASNCHI  198 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~~-~~~~~~~~------------------------~~~~~~~~l~e~~~~aDv  198 (313)
                      .+|||+|+|.||+.+++.+.. -++++.+ .|+.++..                        .+.....++++++..+|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            379999999999999998875 4677654 44332100                        011123457788888999


Q ss_pred             EEEecCCC
Q 021388          199 LVVACPLT  206 (313)
Q Consensus       199 V~~~lp~~  206 (313)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998743

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.91  E-value=0.025  Score=53.73  Aligned_cols=87  Identities=16%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhC-CCCEEE-ecCCCCCc-cc-----cc-----cCCCHHH-HhhcCCEEEEecCCChhh
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAF-SCPINY-YSRTEKPN-LK-----YK-----YYPSVVE-LASNCHILVVACPLTEET  209 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~-G~~V~~-~~~~~~~~-~~-----~~-----~~~~l~e-~~~~aDvV~~~lp~~~~t  209 (313)
                      ++|+|+|. |.+|+.+++.|... ++++.. .++..... ..     ..     .+.++++ ...++|+|++|+|...+ 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            68999996 99999999999876 667654 55432211 00     10     1222322 45789999999995432 


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      ..+    ....++.|..+||.|-.=-.
T Consensus        82 ~~~----v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         82 MDL----APQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             HHH----HHHHHhCCCEEEECCcccCC
Confidence            212    11223578999999844333

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=95.90  E-value=0.15  Score=48.34  Aligned_cols=91  Identities=8%  Similarity=0.038  Sum_probs=63.6

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+.|++|++||=+  ++.++++..+..+|++|.+..|..-..              .+  +....++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            3788999999986  688999999999999999887653211              12  22357899999999999874


Q ss_pred             c----CCC-h--hh------hcccCHHHHhcc-CCCcEEEEcC
Q 021388          203 C----PLT-E--ET------RHIINREVIDAL-GPKGVLINIG  231 (313)
Q Consensus       203 l----p~~-~--~t------~~li~~~~l~~m-k~ga~lIn~~  231 (313)
                      .    ... +  ..      ...++++.++.. |++++|.-+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            3    100 0  01      123567777775 6778777665

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.85  E-value=0.006  Score=50.45  Aligned_cols=60  Identities=20%  Similarity=0.208  Sum_probs=44.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+|+|||. |.+|..+|-.|...+.  ++..+|+..+...+               .....+..+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            48999999 9999999999986554  69999988543221               0112245677899999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.80  E-value=0.16  Score=47.59  Aligned_cols=136  Identities=18%  Similarity=0.228  Sum_probs=84.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------------ccc----cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------------NLK----YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------------~~~----~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++|.|+|.|.||.-++.+|...|..|..+.|.+..            ..+    ......-.+.+..+|+|++++-.. +
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence            58999999999999999999999778888776630            011    011122335566899999998643 3


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC--cccCCCceEEccCCCCCc
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLENVVLMPHVGSGT  284 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~--~L~~~pnv~lTPH~a~~t  284 (313)
                      +...+ +.+.+.+++.+.++-.--| +=..+.+.+.....++.+ ++..+...-..+.  .......+.+.+..++..
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLG-GVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEE-EEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            44444 6677888888877755444 233445666666554542 4444322221221  244466777777766555

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.77  E-value=0.03  Score=50.53  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35899999999999999999999999998 47777753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.72  E-value=0.045  Score=49.82  Aligned_cols=97  Identities=22%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             cccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC-----------CccccccCCCHHHHhhcCCEEEEecCC
Q 021388          138 LTTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK-----------PNLKYKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       138 ~~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .|.+++..+++|+|+ |.||..+|+.|.+.+.+....-|...           ...+.....+++....+.|+++-....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            578899999999997 89999999999998886554433221           111223334555545555554443322


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      .  +-.+|+.+   .+|||+++||-++..=+|+.
T Consensus       241 ~--~g~~I~pq---~lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         241 P--KGVEIFPQ---HLKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             C--CCceechh---hccCCeEEEcCCcCcccccc
Confidence            2  23345554   46899999999998766654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.70  E-value=0.027  Score=51.01  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSR  175 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~  175 (313)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46999999999999999999999999998 5777764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.074  Score=52.06  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccccC--CCHHHHhhc-CCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYKYY--PSVVELASN-CHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~e~~~~-aDvV~~~lp~~~~  208 (313)
                      ++.|+++.|+|.|.+|.++|+.|+..|++|.++|+......         +....  ....+++.. .|+|+..-...+.
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            36789999999999999999999999999999997542211         11111  122334444 8988775421111


Q ss_pred             h----------hcccCH-HHHhccCC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          209 T----------RHIINR-EVIDALGP-KGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       209 t----------~~li~~-~~l~~mk~-ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      .          ..++.+ +++..+.+ ..+-|--+.|......-+...|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            1          112333 23333333 34556666788888888888887644

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.68  E-value=0.021  Score=61.40  Aligned_cols=64  Identities=17%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhC-CCC-------------EEEecCCCCCcc-------c---ccc-CCCHHHH---hh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAF-SCP-------------INYYSRTEKPNL-------K---YKY-YPSVVEL---AS  194 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~-G~~-------------V~~~~~~~~~~~-------~---~~~-~~~l~e~---~~  194 (313)
                      ..++|+|||.|.||+..|+.|... +.+             |.+.|++.+...       +   ... ..+.+++   ++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467999999999999999999754 334             788887764211       1   111 3344444   46


Q ss_pred             cCCEEEEecCCC
Q 021388          195 NCHILVVACPLT  206 (313)
Q Consensus       195 ~aDvV~~~lp~~  206 (313)
                      ++|+|++++|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999964

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.68  E-value=0.3  Score=47.22  Aligned_cols=179  Identities=14%  Similarity=0.158  Sum_probs=117.2

Q ss_pred             cCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC
Q 021388           89 KGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC  168 (313)
Q Consensus        89 ~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~  168 (313)
                      ..|+|.|..= +  -+|=.+++-+++.+|-.                   +..|...+|.+.|.|.-|-++++.+++.|+
T Consensus       166 ~~IPvFhDDq-q--GTaiv~lA~llnalk~~-------------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~  223 (432)
T COG0281         166 MNIPVFHDDQ-Q--GTAIVTLAALLNALKLT-------------------GKKLKDQKIVINGAGAAGIAIADLLVAAGV  223 (432)
T ss_pred             CCCCcccccc-c--HHHHHHHHHHHHHHHHh-------------------CCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence            4688888753 2  35556777788887633                   567999999999999999999999999998


Q ss_pred             ---CEEEecCCCC----Ccc--cccc-----------CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388          169 ---PINYYSRTEK----PNL--KYKY-----------YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI  228 (313)
Q Consensus       169 ---~V~~~~~~~~----~~~--~~~~-----------~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI  228 (313)
                         +|+.+|+..-    ...  ..++           ... ++.+..+|+++-+-     ..+++.++.++.|.+.+++.
T Consensus       224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf  297 (432)
T COG0281         224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF  297 (432)
T ss_pred             CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence               4888887532    110  0000           011 44678899876542     22889999999999999998


Q ss_pred             EcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH-----HHHHHHHHHHHHHH
Q 021388          229 NIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR-----KTMADLVLGNLEAH  302 (313)
Q Consensus       229 n~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~-----~~~~~~~~~nl~~~  302 (313)
                      =.+.-..--....+....+| .+-+     + .-|..+.   |..|+++-|-+.-..-+++     +.|.--+++-|.++
T Consensus       298 alaNP~pEi~Pe~a~~~~~~aaiva-----T-Grsd~Pn---QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~  368 (432)
T COG0281         298 ALANPTPEITPEDAKEWGDGAAIVA-----T-GRSDYPN---QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADL  368 (432)
T ss_pred             ecCCCCccCCHHHHhhcCCCCEEEE-----e-CCCCCcc---cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhh
Confidence            88876642222233333333 3432     2 2222111   8999999999876544333     44555566666666


Q ss_pred             Hc
Q 021388          303 FL  304 (313)
Q Consensus       303 ~~  304 (313)
                      ..
T Consensus       369 ~~  370 (432)
T COG0281         369 AR  370 (432)
T ss_pred             cc
Confidence            43

>PLN02527 aspartate carbamoyltransferase

Probab=95.67  E-value=0.1  Score=48.80  Aligned_cols=89  Identities=20%  Similarity=0.316  Sum_probs=58.9

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHHhC-CCCEEEecCCCCCc----------cc--cccCCCHHHHhhcCCEEEEecCC
Q 021388          142 FTGKTVGIIGLG---RIGMAVAKRAEAF-SCPINYYSRTEKPN----------LK--YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       142 l~g~~igiiG~G---~iG~~iA~~l~~~-G~~V~~~~~~~~~~----------~~--~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      +.|.+|+++|-+   ++.++++..+..+ |++|.+..|..-..          .+  .....++++.++.+|+|....-.
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q  228 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ  228 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence            788999999976   6889999998887 99998887644211          01  12357899999999999884321


Q ss_pred             Chh------------hhcccCHHHHhccCCCcEEEEc
Q 021388          206 TEE------------TRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       206 ~~~------------t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      .+.            ....++++.++.++++++|.-+
T Consensus       229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            000            0123455556666666655544

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.66  E-value=0.055  Score=53.69  Aligned_cols=99  Identities=13%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCccc---------------------------c
Q 021388          141 KFTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNLK---------------------------Y  183 (313)
Q Consensus       141 ~l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---------------------------~  183 (313)
                      .+.|++|+|+|+          .+-...+++.|...|.+|.+||+.......                           .
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            478999999998          557889999999999999999997432100                           1


Q ss_pred             ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388          184 KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       184 ~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~  242 (313)
                      ....++.+.++.+|+|+++....+ -+.+--+.....|++..+++|. |+ +.|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            123456788999999999987543 2222223445668766689994 44 34655543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.059  Score=53.12  Aligned_cols=109  Identities=23%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEec--CCC-h----h
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVAC--PLT-E----E  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~l--p~~-~----~  208 (313)
                      ++.|++|.|+|+|..|.++|+.|+..|++|.++|......     .+......-.+-+.++|+|+..=  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            3678999999999999999999999999999999654311     12221110112346799887532  211 1    1


Q ss_pred             h---hc----ccCH-HHHhc-c-----CCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          209 T---RH----IINR-EVIDA-L-----GPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       209 t---~~----li~~-~~l~~-m-----k~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      .   +.    ++.+ +.+.. +     +...+-|.-+.|.....+-+...|+...
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g  140 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG  140 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1   11    1322 22222 2     2334557777899988888888887644

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.029  Score=55.96  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=69.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccccC--CCHHHHhhcCCEEEEe--cCCC--
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYKYY--PSVVELASNCHILVVA--CPLT--  206 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~e~~~~aDvV~~~--lp~~--  206 (313)
                      +.+++|.|+|+|..|.++|+.|+..|++|.++|.......         +....  ....+.+..+|+|+..  +|.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            5688999999999999999999999999999997543211         11111  1123455689998886  3432  


Q ss_pred             ---hh-------hhcccCH-HHHh-cc--------CCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          207 ---EE-------TRHIINR-EVID-AL--------GPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       207 ---~~-------t~~li~~-~~l~-~m--------k~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                         |.       ...++.+ +.+. .+        ++..+-|--+-|......-+.+.|++....
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence               21       1112221 2221 12        123455666678888888888888765544

>PRK12861 malic enzyme; Reviewed

Probab=95.65  E-value=0.43  Score=49.95  Aligned_cols=157  Identities=11%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388           90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-  168 (313)
                      .|++.|.. .++  +|=.+++-+++.+|-.                   +..+...+|.|.|.|.-|-.+++.+...|. 
T Consensus       157 ~ipvf~DD-~qG--Ta~v~lA~llnal~~~-------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHDD-QHG--TAITVSAAFINGLKVV-------------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeeccc-cch--HHHHHHHHHHHHHHHh-------------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            79999984 444  5556778888887733                   456888999999999999999999999998 


Q ss_pred             --CEEEecCCCC----C-c--cc-----c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          169 --PINYYSRTEK----P-N--LK-----Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       169 --~V~~~~~~~~----~-~--~~-----~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        +++.+|+..-    . .  ..     +  ....+|.|+++.+|+++- +.    ..++++++.+..|.+.+++.=.|.
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLsN  289 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALAN  289 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECCC
Confidence              6888885431    1 0  10     1  123589999999998754 33    247899999999999999999888


Q ss_pred             CccccHHHHHHHHHhCC-eeEEEecCCCCCCCCCCcccCCCceEEccCCCCC
Q 021388          233 GPHVDERELVSALVEGR-LGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG  283 (313)
Q Consensus       233 g~~vd~~al~~al~~~~-l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~  283 (313)
                      ...--..+.+.+ ..|+ +.  +.    ...   +.-=|..|+++-|=++-.
T Consensus       290 PtpE~~pe~a~~-~~g~aiv--aT----Grs---~~pnQ~NN~l~FPgi~~G  331 (764)
T PRK12861        290 PTPEIFPELAHA-TRDDVVI--AT----GRS---DYPNQVNNVLCFPYIFRG  331 (764)
T ss_pred             CCccCCHHHHHh-cCCCEEE--Ee----CCc---CCCCccceeeecchhhHH
Confidence            764211122222 3344 33  22    111   112367889999977543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.62  E-value=0.059  Score=47.69  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~  176 (313)
                      ..|.+++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            458999999999999999999999999985 8888765

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.60  E-value=0.12  Score=47.97  Aligned_cols=108  Identities=21%  Similarity=0.185  Sum_probs=73.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCC-EEEecCC--CCCccccccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHH
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCP-INYYSRT--EKPNLKYKYYPSVVELASN--CHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ..+|-|.|. |.+|+.+.+.|..+|++ ++..++.  .....+...+.++.++-..  .|+.++++|.. .+...+ ++.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence            457888887 78999999999999987 3345766  4455566778899999887  89999999932 333333 333


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG  254 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~  254 (313)
                      .+.=-+.++++..+- +..++++|.+..+++.++-.+
T Consensus        86 ~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlG  121 (291)
T PRK05678         86 IDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIG  121 (291)
T ss_pred             HHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEC
Confidence            332122344444443 345556899999998877443

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.57  E-value=0.037  Score=51.18  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc------------ccCCC---HHHHhhcCCEEEEecCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY------------KYYPS---VVELASNCHILVVACPL  205 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~------------~~~~~---l~e~~~~aDvV~~~lp~  205 (313)
                      +.++++.|+|.|..|++++..|...|+ +|.+++|+.++....            ....+   +.+.+..+|+|+.++|.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            557899999999999999999999998 588999986532110            00011   23345667888877774


Q ss_pred             C
Q 021388          206 T  206 (313)
Q Consensus       206 ~  206 (313)
                      .
T Consensus       205 G  205 (283)
T PRK14027        205 G  205 (283)
T ss_pred             C
Confidence            3

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.56  E-value=0.063  Score=51.03  Aligned_cols=106  Identities=13%  Similarity=0.018  Sum_probs=69.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCCEE-EecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCC-hhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCPIN-YYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLT-EETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~-~~t~~li~  214 (313)
                      .+|||||. .+|+..++.++..  ++++. ++|++.++..      +...+.++++++.+.|++++++|.+ +...|.  
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~--   80 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS--   80 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence            58999999 6799999888765  46754 6787765322      3345789999999999999999843 222221  


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA  253 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga  253 (313)
                      +-..+.|+.|.-++-=-=-..-+.++|+++.++.++...
T Consensus        81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            223344555543333222224677888988888877633

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.54  E-value=0.027  Score=55.63  Aligned_cols=90  Identities=12%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------c-ccc-CCC-HHHHhhcCCEEEEecCCCh
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------K-YKY-YPS-VVELASNCHILVVACPLTE  207 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~-~~~-~~~-l~e~~~~aDvV~~~lp~~~  207 (313)
                      |...++.|++|.|||-|.++..=++.|..+|++|.++.+.-.+..      + ... ..+ ..+.+..+++|+.++...+
T Consensus         5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (457)
T PRK10637          5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA   84 (457)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence            455689999999999999999988999999999999987543221      0 000 001 1345678888877765443


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcC
Q 021388          208 ETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                           +|++.....+...+++|++
T Consensus        85 -----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         85 -----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             -----HhHHHHHHHHHcCcEEEEC
Confidence                 3444444444444555543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.02  Score=57.07  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccC--CCHHHHhhcCCEEEEecCCChhhh----
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYY--PSVVELASNCHILVVACPLTEETR----  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~--~~l~e~~~~aDvV~~~lp~~~~t~----  210 (313)
                      +.|+++.|+|+|.+|.+.++.|+..|++|.++|..+...     .+....  ....+.+.++|+|+.+-...+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            578999999999999999999999999999999654311     122111  123355678998877643222211    


Q ss_pred             ------cccCHHHHh-cc-------CC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          211 ------HIINREVID-AL-------GP-KGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       211 ------~li~~~~l~-~m-------k~-ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                            .++++-.+. .+       ++ ..+-|--+-|+.....-+.+.|+...
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g  143 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG  143 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence                  122222221 11       12 23446666788888888888887644

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.52  E-value=0.079  Score=49.53  Aligned_cols=90  Identities=10%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-----------cc--cccCCCHHHHhhcCCEEEEec----
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-----------LK--YKYYPSVVELASNCHILVVAC----  203 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----------~~--~~~~~~l~e~~~~aDvV~~~l----  203 (313)
                      +.|.+|+++|- +++.++++..+..+|++|....|..-..           .|  .....++++.++++|+|..-.    
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~  229 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM  229 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence            77899999998 7899999999999999999887654221           11  223578999999999998742    


Q ss_pred             CCCh---h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388          204 PLTE---E-----TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p~~~---~-----t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ....   +     ...-++++.++.+|++++|.-+.
T Consensus       230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence            1100   0     11234556666666666655543

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.50  E-value=0.25  Score=46.19  Aligned_cols=90  Identities=11%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +.|.+|+++|- +++-++++..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-.-
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            78899999997 7888999999999999998887644211              11  1235789999999999987431


Q ss_pred             C--C-h----h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388          205 L--T-E----E-----TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       205 ~--~-~----~-----t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .  . +    +     ....++++.++.+|++++|.-+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence            1  0 0    0     11234666666666666665544

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.49  E-value=0.0079  Score=57.85  Aligned_cols=79  Identities=14%  Similarity=0.216  Sum_probs=49.4

Q ss_pred             EEEEcCChHHHHHHHHHHhCC-C-CEEEecCCCCCcc---------ccc-------cCCCHHHHhhcCCEEEEecCCChh
Q 021388          147 VGIIGLGRIGMAVAKRAEAFS-C-PINYYSRTEKPNL---------KYK-------YYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G-~-~V~~~~~~~~~~~---------~~~-------~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      |+|+|.|.+|+.+++.|...+ . +|.+.||+.++..         ...       ...++.++++++|+|+.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            689999999999999998765 4 8999998876411         110       1124678899999999999733 1


Q ss_pred             hhcccCHHHHhccCCCcEEEEc
Q 021388          209 TRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      ...+    .-..++.|.-.||+
T Consensus        80 ~~~v----~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   80 GEPV----ARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHH----HHHHHHHT-EEEES
T ss_pred             hHHH----HHHHHHhCCCeecc
Confidence            1111    12223456667773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.48  E-value=0.022  Score=58.19  Aligned_cols=87  Identities=23%  Similarity=0.311  Sum_probs=60.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----cCCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----YYPS---VVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      ..++.|+|+|++|+.+++.|...|.++.+.|.+++..     .+..    ..++   ++++ +++||.++.+++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            4579999999999999999999999999999887632     1211    1122   2222 678999999999776665


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .++  .....+.|...++--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            443  33445556655554433

>PRK06349 homoserine dehydrogenase; Provisional

Probab=95.46  E-value=0.076  Score=52.01  Aligned_cols=103  Identities=22%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC----------CCCE-EEecCCCCCccc-----cccCCCHHHHhh--cCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF----------SCPI-NYYSRTEKPNLK-----YKYYPSVVELAS--NCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~----------G~~V-~~~~~~~~~~~~-----~~~~~~l~e~~~--~aDvV~~~lp~~  206 (313)
                      .+|||+|+|.+|+.+++.+...          +.+| .+++++.....+     .....++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4799999999999999887532          3444 356766543221     234568889885  479999988653


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG  251 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~  251 (313)
                      ....    .-....|+.|.-+|-.--+.. ...+.|.++.++.+..
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            2222    223355667766664433222 2346788888777664

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.45  E-value=0.048  Score=41.85  Aligned_cols=61  Identities=21%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             CEEEEEcCChHHHHHHHHHH-hCCCCE-EEecCCCCCc----cccccCCCHHHHhhc--CCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-AFSCPI-NYYSRTEKPN----LKYKYYPSVVELASN--CHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~~G~~V-~~~~~~~~~~----~~~~~~~~l~e~~~~--aDvV~~~lp~  205 (313)
                      .++.|+|.|+.|++++.... ..|+++ .++|.++...    .+...+.+++++.+.  .|+.++++|.
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~   72 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA   72 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence            57999999999999886553 667764 5667665532    233345577777766  9999999983

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.39  E-value=0.072  Score=45.62  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=28.0

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCC-EEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTE  177 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~  177 (313)
                      +|+|||+|.+|..+++.|...|.. +..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999995 88887653

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.38  E-value=0.027  Score=56.72  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.++++.|+|.|.+|++++..|...|++|.+++|+.+
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            47789999999999999999999999999999998754

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=95.38  E-value=0.071  Score=49.91  Aligned_cols=64  Identities=25%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             CEEEEEcCChHH-HHHHHHHHhCC--CC-EEEecCCCCCcc------cc-ccCCCHHHHhhc--CCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIG-MAVAKRAEAFS--CP-INYYSRTEKPNL------KY-KYYPSVVELASN--CHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG-~~iA~~l~~~G--~~-V~~~~~~~~~~~------~~-~~~~~l~e~~~~--aDvV~~~lp~~~~  208 (313)
                      .++||||+|.++ +..+..++..+  ++ |.++|++++...      +. ..+.+++++++.  .|+|++++|..-+
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            589999999776 45888888776  34 556788876422      22 357789999876  5899999996544

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.37  E-value=0.058  Score=51.91  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 58888865

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.37  E-value=0.022  Score=48.26  Aligned_cols=61  Identities=16%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             EEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc---ccc-------cCCCHHHHhhcCCEEEEecCCCh
Q 021388          147 VGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL---KYK-------YYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       147 igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---~~~-------~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      |.|+|. |.+|+.+++.|...|++|.++.|++.+..   +..       ...++.+.++.+|+|+.+++...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            578884 99999999999999999999999876422   111       12245677889999999997543

...

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.34  E-value=0.11  Score=42.49  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE  177 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~  177 (313)
                      +|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            47899999999999999999998 588888653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.33  E-value=0.047  Score=51.87  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45899999999999999999999999998 78888864

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.32  E-value=0.11  Score=49.18  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=62.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+.|.+|+++|= .++.++++..+..+|++|.+..|..-..              .+  +....++++.++.+|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            488999999997 6788999999999999999887753211              01  223578999999999998833


Q ss_pred             CC----Ch----h------hhcccCHHHHhccCCCcEEEEcC
Q 021388          204 PL----TE----E------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p~----~~----~------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      -.    .+    +      ...-++++.++.+|++++|.-+.
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence            11    00    0      01345666666666666666554

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.28  E-value=0.028  Score=56.89  Aligned_cols=82  Identities=15%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cCCC---HHH-HhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YYPS---VVE-LASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~---l~e-~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .++-|+|+|++|+.+++.|+..|.+|.+.|.+++...     +..    ...+   +++ -++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            5789999999999999999999999999998765321     111    1122   222 25689999999987766655


Q ss_pred             ccCHHHHhccCCCcEEE
Q 021388          212 IINREVIDALGPKGVLI  228 (313)
Q Consensus       212 li~~~~l~~mk~ga~lI  228 (313)
                      ++.. . ..+.+...+|
T Consensus       498 iv~~-~-~~~~~~~~ii  512 (558)
T PRK10669        498 IVAS-A-REKRPDIEII  512 (558)
T ss_pred             HHHH-H-HHHCCCCeEE
Confidence            5422 2 2234454444

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.25  E-value=0.24  Score=45.03  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY  172 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~  172 (313)
                      +|=-+++-+|+.+|-.                   +..|...+|.|+|.|.-|-.+|+.+...    |.       +++.
T Consensus         4 TaaV~lAgll~Al~~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~l   64 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT-------------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWL   64 (255)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE
T ss_pred             hHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEE
Confidence            4556778888887744                   4458899999999999999999999887    87       4888


Q ss_pred             ecCCCC----C-c-cc-----------cccCCCHHHHhhcC--CEEEEecCCChhhhcccCHHHHhccCC---CcEEEEc
Q 021388          173 YSRTEK----P-N-LK-----------YKYYPSVVELASNC--HILVVACPLTEETRHIINREVIDALGP---KGVLINI  230 (313)
Q Consensus       173 ~~~~~~----~-~-~~-----------~~~~~~l~e~~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---ga~lIn~  230 (313)
                      +|+..-    . . ..           .....+|.|+++.+  |+++-+--    ..++++++.++.|.+   .+++.=.
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~L  140 (255)
T PF03949_consen   65 VDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFPL  140 (255)
T ss_dssp             EETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred             EeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEEC
Confidence            886421    1 0 00           01124899999998  99875432    456899999999987   8999999


Q ss_pred             CCCcc
Q 021388          231 GRGPH  235 (313)
Q Consensus       231 ~rg~~  235 (313)
                      |.-..
T Consensus       141 SNPt~  145 (255)
T PF03949_consen  141 SNPTP  145 (255)
T ss_dssp             SSSCG
T ss_pred             CCCCC
Confidence            98776

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.21  E-value=0.049  Score=50.79  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             EEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCccc----------c----cc--CCCHHHHhhcCCEEEEecCCChh
Q 021388          147 VGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPNLK----------Y----KY--YPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~~----------~----~~--~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      |+|||.|.+|..+|-.+...|  .++..+|+..+...+          .    ..  ..+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998888  469999987653221          0    00  123 4678999999999853221


Q ss_pred             ---hhc--------ccC--HHHHhccCCCcEEEEcCC
Q 021388          209 ---TRH--------IIN--REVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 ---t~~--------li~--~~~l~~mk~ga~lIn~~r  232 (313)
                         ++.        ++.  ...+....|.+++|+++-
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence               111        110  122333458899999883

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08223 hypothetical protein; Validated

Probab=95.21  E-value=0.076  Score=49.16  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=31.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSR  175 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~  175 (313)
                      ..|.+++|.|||+|.+|..+++.|...|. ++..+|.
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~   59 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF   59 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence            45999999999999999999999999998 4667764

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.16  E-value=0.13  Score=48.70  Aligned_cols=90  Identities=10%  Similarity=0.140  Sum_probs=60.8

Q ss_pred             cCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +.|++|++||-+  ++.++++..+..+|++|.+..|..-..              .+  .....+++++++++|+|..-+
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            789999999997  789999999999999998887644211              11  123468899999999998853


Q ss_pred             CCC-------hh-----hhcccCHHHHh-ccCCCcEEEEcC
Q 021388          204 PLT-------EE-----TRHIINREVID-ALGPKGVLINIG  231 (313)
Q Consensus       204 p~~-------~~-----t~~li~~~~l~-~mk~ga~lIn~~  231 (313)
                      -..       ++     ...-++++.++ .+|++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            210       00     11234556666 356666665543

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.15  E-value=0.16  Score=47.83  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc-------c--------ccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK-------Y--------KYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~e~~~~aDvV  199 (313)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+       .        ....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            48999999 9999999999986665       68888984432  111       0        0113445778999999


Q ss_pred             EEecCC--Ch-hhhc-cc--C----HH---HHhccC-CCcEEEEcCCCccccHHHHHH
Q 021388          200 VVACPL--TE-ETRH-II--N----RE---VIDALG-PKGVLINIGRGPHVDERELVS  243 (313)
Q Consensus       200 ~~~lp~--~~-~t~~-li--~----~~---~l~~mk-~ga~lIn~~rg~~vd~~al~~  243 (313)
                      +++.-.  .+ .++. ++  |    ++   .+.... |.+++|.++  +.+|.-.-+-
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~  138 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA  138 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence            998743  12 1221 11  1    11   122234 588899886  5555555333

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=95.14  E-value=0.1  Score=48.99  Aligned_cols=90  Identities=13%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHh---CCCCEEEecCCCCCc---ccc---c--c------CCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEA---FSCPINYYSRTEKPN---LKY---K--Y------YPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~---~G~~V~~~~~~~~~~---~~~---~--~------~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||. |.+|+.++..+..   .+..+..+|+.+...   ...   .  .      ..++.+.++++|+|+++.-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 9999999988743   445788888764321   000   1  0      235567789999999997532


Q ss_pred             hh---hh-ccc------CHHHHhc---cCCCcEEEEcCCCc
Q 021388          207 EE---TR-HII------NREVIDA---LGPKGVLINIGRGP  234 (313)
Q Consensus       207 ~~---t~-~li------~~~~l~~---mk~ga~lIn~~rg~  234 (313)
                      ..   ++ .++      -.+..+.   ..+.+++++++-..
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            11   11 111      1233333   35778999987653

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.10  E-value=0.039  Score=46.01  Aligned_cols=85  Identities=9%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc---ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY---KYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ..|++|++||+=   +++++.++..+.++.++|+++......   ......++++++||+|++.-.  .-..+-+ .+++
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~iL   82 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DDIL   82 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HHHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HHHH
Confidence            578999999972   247888888889999999988532211   123456789999999887642  1011112 5577


Q ss_pred             hccCCCcEEEEcCC
Q 021388          219 DALGPKGVLINIGR  232 (313)
Q Consensus       219 ~~mk~ga~lIn~~r  232 (313)
                      +..++++.++=.|-
T Consensus        83 ~~~~~~~~vil~Gp   96 (147)
T PF04016_consen   83 ELARNAREVILYGP   96 (147)
T ss_dssp             HHTTTSSEEEEESC
T ss_pred             HhCccCCeEEEEec
Confidence            77776766666553

; PDB: 3L5O_B 3NPG_A.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.06  E-value=0.05  Score=53.91  Aligned_cols=108  Identities=15%  Similarity=0.133  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------cccc--CCCHHHHhhcCCEEEEec--C-CChh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------KYKY--YPSVVELASNCHILVVAC--P-LTEE  208 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~~~--~~~l~e~~~~aDvV~~~l--p-~~~~  208 (313)
                      +.|++++|+|+|.-|.+.|+.|...|++|.++|.......        +...  .....+.+.++|+|+..-  | ..|.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999999999995432111        0000  111234567899887764  2 1221


Q ss_pred             h-------hcccCHHHH--hc-cC-----CCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          209 T-------RHIINREVI--DA-LG-----PKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       209 t-------~~li~~~~l--~~-mk-----~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      .       ..++.+-.+  .. ++     ...+-|--+.|......-+.+.|+...
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            1       113443332  33 32     134556666788888888888887644

>PLN02602 lactate dehydrogenase

Probab=95.06  E-value=0.057  Score=51.48  Aligned_cols=86  Identities=16%  Similarity=0.295  Sum_probs=56.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------ccc--CCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YKY--YPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~~--~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|...+...+              ...  ..+. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999987665  58899987653221              011  1233 4489999999986432


Q ss_pred             --h-hhhc-cc--C-------HHHHhccCCCcEEEEcC
Q 021388          207 --E-ETRH-II--N-------REVIDALGPKGVLINIG  231 (313)
Q Consensus       207 --~-~t~~-li--~-------~~~l~~mk~ga~lIn~~  231 (313)
                        + .++. ++  |       .+.+....|.+++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence              1 1221 11  1       12233456788999987

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.05  E-value=0.028  Score=48.49  Aligned_cols=60  Identities=15%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             EEEEEcCChHHHHHHHH--HHhCCCCE-EEecCCCCCc----cc--cccCCCHHHHhh--cCCEEEEecCC
Q 021388          146 TVGIIGLGRIGMAVAKR--AEAFSCPI-NYYSRTEKPN----LK--YKYYPSVVELAS--NCHILVVACPL  205 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~--l~~~G~~V-~~~~~~~~~~----~~--~~~~~~l~e~~~--~aDvV~~~lp~  205 (313)
                      ++.|||.|++|++++..  .+..||++ .+||..++..    .+  ....+++++.++  +.|+.++|+|.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            68999999999999874  35788985 5788776521    11  122356777776  67899999994

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.03  E-value=0.25  Score=46.27  Aligned_cols=59  Identities=24%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCC--EEEecCCC--CCccc---------------cc--cCCCHHHHhhcCCEEEEe
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCP--INYYSRTE--KPNLK---------------YK--YYPSVVELASNCHILVVA  202 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~--V~~~~~~~--~~~~~---------------~~--~~~~l~e~~~~aDvV~~~  202 (313)
                      ++|+|+|. |.+|..++..+...|..  |..+|+..  +...+               ..  ...+. +.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            58999998 99999999999988864  89999854  21110               00  11243 458999999999


Q ss_pred             cC
Q 021388          203 CP  204 (313)
Q Consensus       203 lp  204 (313)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            85

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.02  E-value=0.067  Score=51.33  Aligned_cols=84  Identities=19%  Similarity=0.314  Sum_probs=60.5

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +.||+|||+|+-          .-...++++|+..|.+|.+|||-.....     +.....+++++++.||+++++....
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~  387 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD  387 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence            889999999985          3567899999999999999998664322     2345678999999999999987643


Q ss_pred             hhhhcccCHHHHhccCCCcEEEE
Q 021388          207 EETRHIINREVIDALGPKGVLIN  229 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn  229 (313)
                      + -+. ++-+.+ .|| +.++++
T Consensus       388 e-f~~-~d~~~~-~m~-~~~v~D  406 (414)
T COG1004         388 E-FRD-LDFEKL-LMK-TPVVID  406 (414)
T ss_pred             H-Hhc-cChhhh-hcc-CCEEEe
Confidence            2 222 232333 454 556665

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.00  E-value=0.055  Score=52.97  Aligned_cols=87  Identities=21%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------ccc----cCCCHH---H-HhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------KYK----YYPSVV---E-LASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------~~~----~~~~l~---e-~~~~aDvV~~~lp~~  206 (313)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++|.+++...       +..    ...+.+   + -+.++|.|+++.+..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            4468899999999999999999999999999988765210       111    012222   2 357899998888865


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEc
Q 021388          207 EETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      ..+  ++-......+.+..+++-+
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEE
Confidence            433  3323344555555555543

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.99  E-value=1.2  Score=39.71  Aligned_cols=42  Identities=19%  Similarity=0.123  Sum_probs=36.7

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +..-.+.|++|.|||.|.++..=++.|..+|++|.++++...
T Consensus        18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~   59 (223)
T PRK05562         18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS   59 (223)
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            455678899999999999999988999999999999987654

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.98  E-value=0.16  Score=47.64  Aligned_cols=60  Identities=15%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHHhCCC-CEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEE
Q 021388          142 FTGKTVGIIGL---GRIGMAVAKRAEAFSC-PINYYSRTEKPNL-----KYKYYPSVVELASNCHILVV  201 (313)
Q Consensus       142 l~g~~igiiG~---G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~  201 (313)
                      +.|.+|+++|=   +++.++++..+..+|+ +|.+..|..-...     ......++++.++.+|+|..
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            67899999998   5999999999999999 8988876542211     12335789999999999976

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.93  E-value=0.047  Score=53.88  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             cCCCEEEEEcCChHHHH-HHHHHHhCCCCEEEecCCCCCc------cccccC-CCHHHHhhcCCEEEEec--CC-Chhhh
Q 021388          142 FTGKTVGIIGLGRIGMA-VAKRAEAFSCPINYYSRTEKPN------LKYKYY-PSVVELASNCHILVVAC--PL-TEETR  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~-iA~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~e~~~~aDvV~~~l--p~-~~~t~  210 (313)
                      .+++++.|+|+|..|.+ +|+.|+..|++|.++|......      .+.... ..-.+.+..+|+|+..-  |. .|..+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 7999999999999999764321      121111 11234456799887764  22 22211


Q ss_pred             -------cccCH-HHHhcc-CC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          211 -------HIINR-EVIDAL-GP-KGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       211 -------~li~~-~~l~~m-k~-ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                             .++++ +++..+ ++ ..+-|--+.|......-+.+.|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   23333 333333 33 34556666799888888888887665

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.91  E-value=0.12  Score=47.56  Aligned_cols=62  Identities=24%  Similarity=0.244  Sum_probs=43.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccccc--cCCCHH-HH-hhcCCEEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLKYK--YYPSVV-EL-ASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~-e~-~~~aDvV~~~lp~  205 (313)
                      ++++.|+|.|..+++++..|+..|++ |.+++|+.++.....  ...+.. ++ ...+|+|+.++|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCcc
Confidence            46899999999999999999999985 999999875432110  001111 11 2457888888874

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.91  E-value=0.041  Score=56.49  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc----CCCH---HH-HhhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY----YPSV---VE-LASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~l---~e-~~~~aDvV~~~lp~~~~t~  210 (313)
                      ..++-|+|+|++|+.+++.|.+.|.++.+.|.+++..     .+...    .++.   ++ -++++|.++++++.++.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            4689999999999999999999999999999877632     12111    1222   22 2568999999998766655


Q ss_pred             cccCHHHHhccCCCcEEEE
Q 021388          211 HIINREVIDALGPKGVLIN  229 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn  229 (313)
                      .++  ...+.+.|...++-
T Consensus       480 ~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             HHH--HHHHHhCCCCeEEE
Confidence            442  34444455544443

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.88  E-value=0.095  Score=53.33  Aligned_cols=64  Identities=20%  Similarity=0.368  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-c------ccCCC---HHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-Y------KYYPS---VVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-~------~~~~~---l~e~~~~aDvV~~~lp  204 (313)
                      ....|+|||||-|..|+.+++.++.+|++|.++|+.++.... .      ....+   +.++++++|+|.....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            478899999999999999999999999999999987652221 0      01233   5566788999876544

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=94.81  E-value=0.17  Score=47.96  Aligned_cols=90  Identities=12%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +.|++|+++|-+  ++.++++..+..+|++|....|..-..              .+  .....++++.++++|+|..-.
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  232 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV  232 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            788999999975  889999999999999999887653211              11  223578999999999998743


Q ss_pred             CCCh--------h-----hhcccCHHHHhccC-CCcEEEEcC
Q 021388          204 PLTE--------E-----TRHIINREVIDALG-PKGVLINIG  231 (313)
Q Consensus       204 p~~~--------~-----t~~li~~~~l~~mk-~ga~lIn~~  231 (313)
                      -...        +     ...-++++.++.++ |+++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            1110        0     12234666777765 466666654

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=94.78  E-value=0.041  Score=43.61  Aligned_cols=96  Identities=15%  Similarity=0.174  Sum_probs=60.9

Q ss_pred             cCChHHHHHHHHHHhC----CCCEE-EecCC--CCCc-----cccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHH
Q 021388          151 GLGRIGMAVAKRAEAF----SCPIN-YYSRT--EKPN-----LKYKYYPSVVELAS--NCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       151 G~G~iG~~iA~~l~~~----G~~V~-~~~~~--~~~~-----~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      |+|.||+.+++.+...    +++|. +++++  ....     .......++++++.  ..|+|+=|.+. +...    +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVA----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHH----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHH----HH
Confidence            8999999999999865    67764 56666  1111     11234568999988  89999988553 2222    33


Q ss_pred             HHhccCCCcEEEEcCCCccc---cHHHHHHHHHhCCee
Q 021388          217 VIDALGPKGVLINIGRGPHV---DERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~v---d~~al~~al~~~~l~  251 (313)
                      ....|+.|.-+|-.+.+.+.   ..+.|.++.++++..
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~  113 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGVR  113 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence            55667889999999988888   444566666665543

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PLN02342 ornithine carbamoyltransferase

Probab=94.77  E-value=0.22  Score=47.36  Aligned_cols=91  Identities=13%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCc----------cc---cccCCCHHHHhhcCCEEEEecCC-
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPN----------LK---YKYYPSVVELASNCHILVVACPL-  205 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~---~~~~~~l~e~~~~aDvV~~~lp~-  205 (313)
                      .+.|++|+++|=+ ++.++++..+..+|++|.+..|..-..          .+   +....++++.++.+|+|..-.-. 
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            3789999999973 588888899999999998887654211          01   22357889999999999876311 


Q ss_pred             --C-hh--------hhcccCHHHHhccCCCcEEEEcC
Q 021388          206 --T-EE--------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       206 --~-~~--------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                        . +.        ....++++.++.+|++++|.-+.
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence              1 11        11345666666677766666554

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.75  E-value=0.27  Score=48.19  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=69.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccccC--CCHHHHhhcCCEEEEecCCCh---
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKYY--PSVVELASNCHILVVACPLTE---  207 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~e~~~~aDvV~~~lp~~~---  207 (313)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|......         .+....  ...++....+|+|+..---.+   
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            568999999999999999999999999999998755421         121111  112334568999887643322   


Q ss_pred             hhhc-------ccC-HHHHhc-cC---CCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          208 ETRH-------IIN-REVIDA-LG---PKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       208 ~t~~-------li~-~~~l~~-mk---~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      ..+.       ++. .+++.. ++   ...+-|--+.|......-+...|+....
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            2111       222 233333 32   2345566667988888888888876444

>PRK04148 hypothetical protein; Provisional

Probab=94.75  E-value=0.062  Score=44.07  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-----cCCCHHHHhhcCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-----YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .++++..||+| -|..+|..|+..|++|++.|.++....     +..     .+..-.++-+.+|+|-..-|
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp   86 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP   86 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence            56789999999 999999999999999999998876321     111     11222355667777766655

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=94.74  E-value=0.2  Score=48.93  Aligned_cols=146  Identities=12%  Similarity=0.134  Sum_probs=88.5

Q ss_pred             HHhhCCCccEEEEcCcCCCcCChh-hhhhcCcEEEcCC-CCC---hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC
Q 021388           61 LIDALPKLEIVSSFSVGLDKVDMV-KCKEKGVRVTNTP-DVL---TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD  135 (313)
Q Consensus        61 ~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~n~~-~~~---~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~  135 (313)
                      ++..+.  -+|.....+-.  .+. .+...+|+|.|.- |..   ..+.++.     +.+..++         |.     
T Consensus       178 vLs~y~--D~IviR~~~~~--~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~-----  234 (429)
T PRK11891        178 VMSGYV--DALVIRHPEQG--SVAEFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR-----  234 (429)
T ss_pred             HHHHhC--CEEEEeCCchh--HHHHHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc-----
Confidence            555553  34544433222  332 3344689999986 433   4566663     2222211         11     


Q ss_pred             cccccccCCCEEEEEcCC---hHHHHHHHHHHhC-CCCEEEecCCCCC-cc---------c--cccCCCHHHHhhcCCEE
Q 021388          136 YKLTTKFTGKTVGIIGLG---RIGMAVAKRAEAF-SCPINYYSRTEKP-NL---------K--YKYYPSVVELASNCHIL  199 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~G---~iG~~iA~~l~~~-G~~V~~~~~~~~~-~~---------~--~~~~~~l~e~~~~aDvV  199 (313)
                        .+..+.|++|+++|-+   ++.++++..+..+ |++|.+..+..-. ..         +  +....++++.++.+|+|
T Consensus       235 --~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVV  312 (429)
T PRK11891        235 --LGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVV  312 (429)
T ss_pred             --cCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEE
Confidence              1223789999999994   8999999998876 9999888765431 11         1  22357899999999999


Q ss_pred             EEecCCChh----------hhcccCHHHHhc-cCCCcEEEEcC
Q 021388          200 VVACPLTEE----------TRHIINREVIDA-LGPKGVLINIG  231 (313)
Q Consensus       200 ~~~lp~~~~----------t~~li~~~~l~~-mk~ga~lIn~~  231 (313)
                      ....-..+.          ...-++++.++. .|++++|.-+.
T Consensus       313 Yt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        313 YATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             EEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            884421111          112356777777 77777776554

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.71  E-value=0.23  Score=46.87  Aligned_cols=105  Identities=13%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             EEEEEcCChHHHHHHHHHHh--------CCCCEE-EecCCCC--Cccc--------------c-cc-CC--CHHHHh-hc
Q 021388          146 TVGIIGLGRIGMAVAKRAEA--------FSCPIN-YYSRTEK--PNLK--------------Y-KY-YP--SVVELA-SN  195 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~--------~G~~V~-~~~~~~~--~~~~--------------~-~~-~~--~l~e~~-~~  195 (313)
                      +|+|+|+|++|+.+++.|..        ++.+|. +.|++..  ...+              . .. ..  ++++++ .+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            79999999999999999875        455654 4454431  1111              0 00 12  455553 46


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc-cHHHHHHHHHhCCee
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV-DERELVSALVEGRLG  251 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v-d~~al~~al~~~~l~  251 (313)
                      +|+|+=|.|...+-... -.-+.+.|+.|.-+|-...|.+. ..+.|.++.++++..
T Consensus        82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            89999888743211111 12345667889888888887774 456677777766554

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.70  E-value=0.32  Score=43.15  Aligned_cols=88  Identities=20%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----c-CCCHHHH-----hhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----Y-YPSVVEL-----ASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~-~~~l~e~-----~~~aDvV~~~lp~~  206 (313)
                      ..|+++.|.|.|.+|+.+++.++..|.+|++.+++++...     +..    . ..+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            3578999999999999999999999999999887653211     100    0 0111111     13467777665531


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      .     .....+..|+++..+++.+...
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccCC
Confidence            1     1244556677777777766543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07877 hypothetical protein; Provisional

Probab=94.65  E-value=0.15  Score=53.13  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCC------------Cccc-------------------cc--
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEK------------PNLK-------------------YK--  184 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~------------~~~~-------------------~~--  184 (313)
                      ..|.+++|+|+|+| +|..+|..|...|.  ++...|...-            ...|                   ..  
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            35999999999999 99999999998884  6777663210            0001                   00  


Q ss_pred             ----cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          185 ----YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       185 ----~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                          ...++++++.++|+|+-|+- +-+++.++++...+.-  -.++.-.+.++.+|
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~--iP~i~~~~~~g~~~  235 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARR--IPVLMATSDRGLLD  235 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcC--CCEEEEcCCCCCcC
Confidence                01357788999999988775 5678888877655542  23444444334343

>PRK07411 hypothetical protein; Validated

Probab=94.63  E-value=0.085  Score=51.06  Aligned_cols=83  Identities=14%  Similarity=0.125  Sum_probs=56.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC-------------ccc-----------------c--c--
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP-------------NLK-----------------Y--K--  184 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~--  184 (313)
                      ..|...+|.|||+|.+|..+|+.|...|. ++..+|...-.             ..|                 .  .  
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            45899999999999999999999999998 47777643210             000                 0  0  


Q ss_pred             --c--CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCC
Q 021388          185 --Y--YPSVVELASNCHILVVACPLTEETRHIINREVIDALGP  223 (313)
Q Consensus       185 --~--~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~  223 (313)
                        .  ..+..+++.++|+|+.|+ ++.+++.++++.....-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence              0  013456788899887765 4556777777655544333

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.61  E-value=0.13  Score=47.93  Aligned_cols=29  Identities=21%  Similarity=0.446  Sum_probs=25.7

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCC-EEEec
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCP-INYYS  174 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~-V~~~~  174 (313)
                      +|.|+|.|.+|..+|+.|...|.. +..+|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            589999999999999999999984 66666

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.61  E-value=0.096  Score=56.49  Aligned_cols=88  Identities=10%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--------------------------------Cccc--c----
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--------------------------------PNLK--Y----  183 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--------------------------------~~~~--~----  183 (313)
                      +.-.++.|+|.|++|+..++.+..+|++ . .++..-                                ...+  +    
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~  278 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD  278 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence            3457899999999999999999988665 1 111000                                0000  0    


Q ss_pred             ------ccCCC-HHHHhhcCCEEEEecCCChhhhcccCHH-HHhccCCCc----EEEEcC
Q 021388          184 ------KYYPS-VVELASNCHILVVACPLTEETRHIINRE-VIDALGPKG----VLINIG  231 (313)
Q Consensus       184 ------~~~~~-l~e~~~~aDvV~~~lp~~~~t~~li~~~-~l~~mk~ga----~lIn~~  231 (313)
                            .+.+. +++.+..+|+++.++-..+....++.++ ..+.||+|.    +++|++
T Consensus       279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                  00111 3468889999999998777788889888 778899998    888876

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.061  Score=53.10  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=65.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc------ccC-CCHHHHhhcCCEEEEec--C-CChhhh-
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY------KYY-PSVVELASNCHILVVAC--P-LTEETR-  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~------~~~-~~l~e~~~~aDvV~~~l--p-~~~~t~-  210 (313)
                      -.|++|+|+|+|.-|.+.++.|+. |++|.++|.........      ... ....+.+.++|+|+..=  | .+|... 
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~   82 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI   82 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence            457899999999999999999995 99999999543321100      000 11124567899887753  2 122111 


Q ss_pred             ------cccCH-HHH-hccCCC-cEEEEcCCCccccHHHHHHHHHhCC
Q 021388          211 ------HIINR-EVI-DALGPK-GVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       211 ------~li~~-~~l-~~mk~g-a~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                            .++.+ +++ ..++.. .+=|--+.|+.....-+...|+...
T Consensus        83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  130 (454)
T PRK01368         83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG  130 (454)
T ss_pred             HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence                  13333 232 233332 3445556788888888888888644

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.60  E-value=0.18  Score=47.53  Aligned_cols=93  Identities=11%  Similarity=0.113  Sum_probs=57.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc---------------cccCCCHHHHhhcCCEEE
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK---------------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~e~~~~aDvV~  200 (313)
                      +|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|+
T Consensus         5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV   84 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL   84 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence            8999998 9999999999987664       68889985421  111               001134457899999999


Q ss_pred             EecCCC--h-hhhcc-c--CHH-------HHhccC-CCcEEEEcCCCccccHHH
Q 021388          201 VACPLT--E-ETRHI-I--NRE-------VIDALG-PKGVLINIGRGPHVDERE  240 (313)
Q Consensus       201 ~~lp~~--~-~t~~l-i--~~~-------~l~~mk-~ga~lIn~~rg~~vd~~a  240 (313)
                      ++.-..  + .++.- +  |.+       .+.... |.++++.++  +.+|.-.
T Consensus        85 itAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        85 LVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             EeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            986432  1 12221 1  111       122233 488888886  5454444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd00704 MDH Malate dehydrogenase

Probab=94.60  E-value=0.32  Score=45.90  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCC--CCcccc---------------ccCCCHHHHhhcCCEEE
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTE--KPNLKY---------------KYYPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~--~~~~~~---------------~~~~~l~e~~~~aDvV~  200 (313)
                      +|+|+|. |.+|..+|..|...|.       ++..+|+..  +...+.               ....+..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999999886553       388889876  322210               01135668899999998


Q ss_pred             EecCC--Ch-hhhcc-c--C----HH---HHhcc-CCCcEEEEcCCCccccHHHHH
Q 021388          201 VACPL--TE-ETRHI-I--N----RE---VIDAL-GPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       201 ~~lp~--~~-~t~~l-i--~----~~---~l~~m-k~ga~lIn~~rg~~vd~~al~  242 (313)
                      ++.-.  .+ +++.- +  |    ++   .+... +|.+++|.++  +.+|.-.-+
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  135 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI  135 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence            87632  22 12211 1  1    12   23334 5788888875  556655533

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.59  E-value=0.096  Score=48.84  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh-CCCCEE-EecCCCCCc-------ccccc-CCCHHHHhh-----cCCEEEEecCCChh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA-FSCPIN-YYSRTEKPN-------LKYKY-YPSVVELAS-----NCHILVVACPLTEE  208 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~e~~~-----~aDvV~~~lp~~~~  208 (313)
                      ..++||||.|+||+..+..+.. -++++. ++|++++..       .+... +.+.+++++     +.|+|+.++|...+
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4689999999999997776664 356654 566655421       12322 467888884     58899999984322


Q ss_pred             hhcccCHHHHhccCCCcEEEEcC
Q 021388          209 TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      -+     -.....+.|..+|+-+
T Consensus        84 ~e-----~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 VR-----HAAKLREAGIRAIDLT  101 (302)
T ss_pred             HH-----HHHHHHHcCCeEEECC
Confidence            11     1223356778887776

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.58  E-value=0.39  Score=47.05  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             ccccCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCcccccc--CCCHHH-HhhcCCEEEEecCC
Q 021388          139 TTKFTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY--YPSVVE-LASNCHILVVACPL  205 (313)
Q Consensus       139 ~~~l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~--~~~l~e-~~~~aDvV~~~lp~  205 (313)
                      +..+.|++|+|+|+          .+-+..+++.|...|.+|.+||+.-........  ...+++ .+..+|+|++++..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h  388 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH  388 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence            34589999999999          457889999999999999999997332111000  111222 36789999999875


Q ss_pred             ChhhhcccCHHHH-hccCCCcEEEEcCCCcc
Q 021388          206 TEETRHIINREVI-DALGPKGVLINIGRGPH  235 (313)
Q Consensus       206 ~~~t~~li~~~~l-~~mk~ga~lIn~~rg~~  235 (313)
                      .+ -+. ++-+.+ ..||...+++| +|+-+
T Consensus       389 ~~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        389 QQ-FKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             HH-hhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            43 222 333333 34554568888 46554

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.58  E-value=0.13  Score=48.37  Aligned_cols=76  Identities=18%  Similarity=0.281  Sum_probs=50.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhcc-
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL-  221 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~m-  221 (313)
                      .+|+|+| .|-.|+.+.+.|..... ++.....+.....     .+.++.++++|+|++++|....      .++...+ 
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s------~~~~~~~~   71 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAA------REAVALID   71 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHH------HHHHHHHH
Confidence            4799998 79999999999987653 4444433322211     2334566789999999994422      2233322 


Q ss_pred             CCCcEEEEcC
Q 021388          222 GPKGVLINIG  231 (313)
Q Consensus       222 k~ga~lIn~~  231 (313)
                      +.|..+||.|
T Consensus        72 ~~g~~VIDlS   81 (313)
T PRK11863         72 NPATRVIDAS   81 (313)
T ss_pred             hCCCEEEECC
Confidence            5688999998

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.51  E-value=0.069  Score=50.72  Aligned_cols=56  Identities=23%  Similarity=0.408  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-----ccCCC---HHHHhhcCCEEEE
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-----KYYPS---VVELASNCHILVV  201 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-----~~~~~---l~e~~~~aDvV~~  201 (313)
                      +|||||-|..|+.+++.++.+|++|.++|.++.....  +     ....+   +.++++.+|+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            5899999999999999999999999999987653221  0     11223   6667888998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=94.51  E-value=0.35  Score=39.71  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             HHHHHHHhCCCCEEEecCCCCC---------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388          158 AVAKRAEAFSCPINYYSRTEKP---------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI  228 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~~---------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI  228 (313)
                      ..+++|...|++|++=.-....         ..|+....+.++++++||+|+-.-|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            5677888889999875543221         123444556678999999987665532        56778899999999


Q ss_pred             EcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          229 NIGRGPHVDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       229 n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                      -...-.  ....+++.|.++++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            876655  588899999999999878777533

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.48  E-value=0.095  Score=50.38  Aligned_cols=37  Identities=16%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46999999999999999999999999998 68888754

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.47  E-value=0.097  Score=50.02  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45899999999999999999999999998 47777754

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.47  E-value=0.064  Score=49.72  Aligned_cols=90  Identities=19%  Similarity=0.295  Sum_probs=67.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cc--------------cccCC----------CHHH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LK--------------YKYYP----------SVVE  191 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~--------------~~~~~----------~l~e  191 (313)
                      ...+.++-++|+|..|-..+...+..|+-|..+|.++...     .+              +....          -+.+
T Consensus       161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~  240 (356)
T COG3288         161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE  240 (356)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence            4666788899999999999999999999999988654310     11              11111          1345


Q ss_pred             HhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          192 LASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       192 ~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .+++.|+|+...  |.-|. ..++.++..+.||||+++||.+
T Consensus       241 ~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         241 QAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            678999998763  66554 4478899999999999999975

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.41  E-value=0.12  Score=50.53  Aligned_cols=67  Identities=12%  Similarity=0.071  Sum_probs=52.3

Q ss_pred             cccCCCEEEEEcC----------ChHHHHHHHHHHhCC-CCEEEecCCCCCcc----ccccCCCHHHHhhcCCEEEEecC
Q 021388          140 TKFTGKTVGIIGL----------GRIGMAVAKRAEAFS-CPINYYSRTEKPNL----KYKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       140 ~~l~g~~igiiG~----------G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .++.|++|+|+|+          .+-...+++.|+..| .+|.+||+......    +.....++++.++.||+|+++.+
T Consensus       316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  395 (415)
T PRK11064        316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVD  395 (415)
T ss_pred             cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCC
Confidence            4578999999998          457788999999996 99999999744211    11124678899999999999987


Q ss_pred             CC
Q 021388          205 LT  206 (313)
Q Consensus       205 ~~  206 (313)
                      ..
T Consensus       396 ~~  397 (415)
T PRK11064        396 HS  397 (415)
T ss_pred             CH
Confidence            54

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=94.39  E-value=0.14  Score=48.46  Aligned_cols=63  Identities=10%  Similarity=0.062  Sum_probs=49.1

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+.|.+|+++|-+  ++.++++..+..+|+++.+..|..-..              .+  .....++++.++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4788999999976  689999999999999999887644211              11  22357899999999999875


Q ss_pred             c
Q 021388          203 C  203 (313)
Q Consensus       203 l  203 (313)
                      .
T Consensus       233 ~  233 (336)
T PRK03515        233 V  233 (336)
T ss_pred             C
Confidence            3

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.35  E-value=0.11  Score=48.24  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccccc--cCCCHHH-HhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLKYK--YYPSVVE-LASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .|+++.|+|.|.+|...++.++.+|++ |.+.++..+......  ...+..+ .-...|+|+-++.... +   + ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~-~---~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPS-L---I-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHH-H---H-HHHH
Confidence            467899999999999999999999998 555665543221111  0111111 1134688877665321 1   1 4456


Q ss_pred             hccCCCcEEEEcCC
Q 021388          219 DALGPKGVLINIGR  232 (313)
Q Consensus       219 ~~mk~ga~lIn~~r  232 (313)
                      +.++++..++.+|-
T Consensus       219 ~~l~~~G~iv~~G~  232 (308)
T TIGR01202       219 RRLAKGGEIVLAGF  232 (308)
T ss_pred             HhhhcCcEEEEEee
Confidence            77888888887763

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.35  E-value=0.17  Score=44.82  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +.|+++.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            67899999996 8999999999999999998887754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.30  E-value=0.12  Score=50.12  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            45899999999999999999999999998 57777743

>PRK13529 malate dehydrogenase; Provisional

Probab=94.29  E-value=6.8  Score=39.65  Aligned_cols=211  Identities=13%  Similarity=0.176  Sum_probs=130.8

Q ss_pred             hCCCccEEEEcCcCCCc-CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCccccccc
Q 021388           64 ALPKLEIVSSFSVGLDK-VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF  142 (313)
Q Consensus        64 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l  142 (313)
                      ..|+. +|+.-=-+..+ +.+..--+..|++.|..=-   -+|--+++.+|+.+|-.                   +..+
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQ---GTaaV~LAgll~A~r~~-------------------g~~l  293 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDIQ---GTGAVTLAGLLAALKIT-------------------GEPL  293 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeeccccc---hHHHHHHHHHHHHHHHh-------------------CCCh
Confidence            35664 56655444433 3443334557999998532   45667888889888733                   3568


Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh----CCC-------CEEEecCCCC----C-cc-c-----cc------------cCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA----FSC-------PINYYSRTEK----P-NL-K-----YK------------YYPS  188 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~----~G~-------~V~~~~~~~~----~-~~-~-----~~------------~~~~  188 (313)
                      ...+|.|.|.|..|-.+|+.+..    .|.       +++.+|+..-    . .. .     +.            ...+
T Consensus       294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~  373 (563)
T PRK13529        294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS  373 (563)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC
Confidence            88999999999999999999986    587       6888886431    0 00 0     00            1147


Q ss_pred             HHHHhhcC--CEEEEecCCChhhhcccCHHHHhccCC---CcEEEEcCCCccccHHHHHHHH--HhCCee-EEEecCCCC
Q 021388          189 VVELASNC--HILVVACPLTEETRHIINREVIDALGP---KGVLINIGRGPHVDERELVSAL--VEGRLG-GAGLDVFEN  260 (313)
Q Consensus       189 l~e~~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---ga~lIn~~rg~~vd~~al~~al--~~~~l~-ga~lDV~~~  260 (313)
                      |.|+++.+  |+++-+-    ..-+.++++.++.|.+   .+++.=.|+-..-.|-.-.+|.  .+|+.. +.+.   ..
T Consensus       374 L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---pf  446 (563)
T PRK13529        374 LLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---PF  446 (563)
T ss_pred             HHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---CC
Confidence            89999887  9886532    1236899999999987   8999999887763333333333  346543 2222   11


Q ss_pred             CCCCC----CcccCCCceEEccCCCCCcHHH-----HHHHHHHHHHHHHHHHc
Q 021388          261 EPHVP----EELFGLENVVLMPHVGSGTVET-----RKTMADLVLGNLEAHFL  304 (313)
Q Consensus       261 Ep~~~----~~L~~~pnv~lTPH~a~~t~~~-----~~~~~~~~~~nl~~~~~  304 (313)
                      +|..-    ...=+..|+++=|=++-....+     -+.|.-.+++-|.++..
T Consensus       447 ~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~  499 (563)
T PRK13529        447 APVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP  499 (563)
T ss_pred             CCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence            22111    1234678899999776433222     24555555555555554

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.25  E-value=0.14  Score=48.09  Aligned_cols=85  Identities=15%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc-----CCCHHHHhh---cCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY-----YPSVVELAS---NCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~~~---~aDvV~~~lp~~~~  208 (313)
                      .|+++.|+|.|.+|...++.++..|+ +|++.++++++.     .++..     ..++.++..   ..|+|+-++... .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence            58899999999999999999999999 588888765431     12211     113334332   268888776532 1


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +   + ...++.++++..++.+|.
T Consensus       248 ~---~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S---I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H---H-HHHHHHhhcCCEEEEEcc
Confidence            1   1 456778889998888875

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.17  E-value=0.089  Score=49.02  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=44.6

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+..+.     .+..       ...++.+.++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4788998 69999999999999999999998875321     1111       12346677899999887654

>PLN00106 malate dehydrogenase

Probab=94.09  E-value=0.16  Score=47.92  Aligned_cols=92  Identities=14%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCcc--c-------cc-----cCCCHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNL--K-------YK-----YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~--~-------~~-----~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ..++|+|||. |++|..+|..|...+.  ++..+|+.+....  .       ..     ...++.+.++++|+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4469999999 9999999999985554  7889997662110  0       00     123457889999999988642


Q ss_pred             --Ch-hhhc-cc--C----HH---HHhccCCCcEEEEcCCCc
Q 021388          206 --TE-ETRH-II--N----RE---VIDALGPKGVLINIGRGP  234 (313)
Q Consensus       206 --~~-~t~~-li--~----~~---~l~~mk~ga~lIn~~rg~  234 (313)
                        .+ .++. ++  |    .+   .+....|.+++++++---
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence              21 1221 11  1    12   233345889999987654

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.09  E-value=0.34  Score=45.89  Aligned_cols=92  Identities=10%  Similarity=0.068  Sum_probs=63.0

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+.|.+|+++|-+  ++.++++..+..+|++|.+..|..-..              .+  +....++++.++.+|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            3789999999976  789999999999999998887653111              01  22347899999999999875


Q ss_pred             cCCC-----h---h-----hhcccCHHHHhcc-CCCcEEEEcCC
Q 021388          203 CPLT-----E---E-----TRHIINREVIDAL-GPKGVLINIGR  232 (313)
Q Consensus       203 lp~~-----~---~-----t~~li~~~~l~~m-k~ga~lIn~~r  232 (313)
                      .-..     +   +     ...-++++.++.. |++++|.-+.-
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP  276 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP  276 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence            4210     0   0     1123466677664 67777766653

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.06  E-value=0.13  Score=46.83  Aligned_cols=61  Identities=16%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--cc-------ccCCCHHHHh------hc-CCEEEEecCCC
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KY-------KYYPSVVELA------SN-CHILVVACPLT  206 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~-------~~~~~l~e~~------~~-aDvV~~~lp~~  206 (313)
                      +|.|.|. |.+|+.+++.|...|++|.+..|+++...  +.       ...+++.+.+      .. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            3667776 99999999999999999999998775321  11       1123455666      44 89998887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK05442 malate dehydrogenase; Provisional

Probab=94.06  E-value=0.43  Score=45.06  Aligned_cols=94  Identities=10%  Similarity=0.077  Sum_probs=57.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc-------c--------ccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK-------Y--------KYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~e~~~~aDvV  199 (313)
                      .+|+|||. |.+|..+|-.|...|.       ++..+|..+..  ..+       .        ....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998875443       68888875431  111       0        0122445788999999


Q ss_pred             EEecCC--Ch-hhhc-cc--C----HHH----HhccCCCcEEEEcCCCccccHHH
Q 021388          200 VVACPL--TE-ETRH-II--N----REV----IDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       200 ~~~lp~--~~-~t~~-li--~----~~~----l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      +++.-.  .+ +++. ++  |    +++    -+..++.+++|.++  +.+|.-.
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            988642  22 1221 11  1    122    22244688999987  5555544

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.01  E-value=0.057  Score=43.96  Aligned_cols=33  Identities=33%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      .++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999999999 47888754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.01  E-value=0.11  Score=38.12  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN  180 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~  180 (313)
                      ++.|||-|.+|-.+|..++.+|.+|..+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58899999999999999999999999998877644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.01  E-value=0.2  Score=45.67  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~  178 (313)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.+++++
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            678999999999999999999999997 888776554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.93  E-value=0.32  Score=47.72  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccccC---CCHHHHhhcCCEEEEec--CC-Ch
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKYY---PSVVELASNCHILVVAC--PL-TE  207 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~~---~~l~e~~~~aDvV~~~l--p~-~~  207 (313)
                      .+-+++|+|+|.+|.++|+.|+..|++|.++|......         .+....   .+ .+.+.++|+|+..-  |. .|
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p   83 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTP   83 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCH
Confidence            34589999999999999999999999999999754321         021111   12 24456889887653  21 22


Q ss_pred             hhh-------cccCH-HHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          208 ETR-------HIINR-EVIDA-LGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       208 ~t~-------~li~~-~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      ...       .++.+ +++.. ++...+-|--+.|......-+...|+...
T Consensus        84 ~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  134 (448)
T PRK03803         84 ALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG  134 (448)
T ss_pred             HHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            111       12322 33333 34334556666799888888888887644

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=93.90  E-value=0.62  Score=43.20  Aligned_cols=107  Identities=21%  Similarity=0.094  Sum_probs=71.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCE-EEecCC--CCCccccccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHH
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPI-NYYSRT--EKPNLKYKYYPSVVELASN--CHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V-~~~~~~--~~~~~~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.+|.|.| .|.+|+.+-+.+.+.|.++ ...++.  .....+...+.+++++-..  .|++++++|.. .+...+ ++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l-~e~   83 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAI-FEA   83 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHH-HHH
Confidence            45677777 4899999999999999883 345665  3344566677899998886  79999999933 333333 333


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA  253 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga  253 (313)
                      .+.=-+.++++..+-+. -++++|.+..++..++-.
T Consensus        84 ~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~giril  118 (286)
T TIGR01019        84 IDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLI  118 (286)
T ss_pred             HHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEE
Confidence            33212234444444333 467889999998887643

ATP citrate lyases appear to form an outgroup.

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=93.90  E-value=0.21  Score=49.93  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +..+.|++..|+|-.. +|.+++..|+.....|..+-..         ..++.|.+.++|+|+.++.-.    +++-.+ 
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~P----efVKgd-  222 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQP----EFVKGD-  222 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCCc----ceeecc-
Confidence            3458999999999886 5899999999999999876432         236889999999999998633    344343 


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG  297 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~  297 (313)
                        .+|||+++||+|--.+-|...     ++|.-  ..=||...+----.       =.+||--||.-.....-+.+..++
T Consensus       223 --WiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Akeva-------s~ITPVPGGVGPMTVAMLmqNtve  286 (935)
T KOG4230|consen  223 --WIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKEVA-------SFITPVPGGVGPMTVAMLMQNTVE  286 (935)
T ss_pred             --cccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhhhh-------hccccCCCCcchHHHHHHHHHHHH
Confidence              368999999999776655421     23322  35577433321000       168888888777666666666666


Q ss_pred             HHHHHHcC
Q 021388          298 NLEAHFLN  305 (313)
Q Consensus       298 nl~~~~~g  305 (313)
                      .-.+++.+
T Consensus       287 aAKR~r~e  294 (935)
T KOG4230|consen  287 AAKRQREE  294 (935)
T ss_pred             HHHHHHHh
Confidence            66666643

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.87  E-value=0.15  Score=48.10  Aligned_cols=85  Identities=24%  Similarity=0.369  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC---CCC-----ccccccC----CCHHH--HhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT---EKP-----NLKYKYY----PSVVE--LASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~---~~~-----~~~~~~~----~~l~e--~~~~aDvV~~~lp~~~~  208 (313)
                      .|.++.|+|.|.+|...++.++..|++|++.+++   +++     ..++...    .+..+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            5789999999999999999999999999999874   221     1121111    11111  1234688877765221 


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                         .+ .+.++.++++..++.+|.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               12 456677888888777764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.87  E-value=0.27  Score=47.99  Aligned_cols=104  Identities=18%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----------cccccC--CCHHHHhhcCCEEEEec--C-CChhh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----------LKYKYY--PSVVELASNCHILVVAC--P-LTEET  209 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----------~~~~~~--~~l~e~~~~aDvV~~~l--p-~~~~t  209 (313)
                      ++.|||+|.+|.++|+.|+..|++|.++|......           .+....  .+ .+.+.++|+|+..-  | .+|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            37899999999999999999999999999654311           122111  22 34567899887654  2 22221


Q ss_pred             h-------cccCH-HHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          210 R-------HIINR-EVIDA-LGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       210 ~-------~li~~-~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      .       .++.+ +++.. ++...+-|.-+.|......-+...|+....
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~  129 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL  129 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            1       12322 33333 343455677778999888888888887553

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.86  E-value=0.098  Score=48.98  Aligned_cols=59  Identities=22%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c------ccCCCHHHHhhcCCEEEEecC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y------KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~------~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +|+|||.|.+|..+|-.|...|.  ++..+|...+...+          +      ....+-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998876665  58899987653221          0      001122467899999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=93.84  E-value=0.33  Score=46.37  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEcCC--------hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcC
Q 021388          141 KFTGKTVGIIGLG--------RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNC  196 (313)
Q Consensus       141 ~l~g~~igiiG~G--------~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~a  196 (313)
                      .+.|++|+++|.|        ++.++++..+..+|++|.+..|..-..              .+  .....++++.++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999998743        455788889999999999888753210              11  12357899999999


Q ss_pred             CEEEEec
Q 021388          197 HILVVAC  203 (313)
Q Consensus       197 DvV~~~l  203 (313)
                      |+|..-.
T Consensus       247 Dvvyt~~  253 (357)
T TIGR03316       247 DIVYPKS  253 (357)
T ss_pred             CEEEECC
Confidence            9998763

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.81  E-value=0.17  Score=47.72  Aligned_cols=64  Identities=14%  Similarity=0.257  Sum_probs=44.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCC--CCEEEecCCCCCcc--c-------ccc--C---CCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFS--CPINYYSRTEKPNL--K-------YKY--Y---PSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~--~-------~~~--~---~~l~e~~~~aDvV~~~l  203 (313)
                      -+..++|+|||. |.+|..+|..|...+  .++..+|+......  .       ...  .   .+..+.++.+|+|++++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            367789999999 999999999998444  57889998321110  0       111  1   12257899999999887


Q ss_pred             C
Q 021388          204 P  204 (313)
Q Consensus       204 p  204 (313)
                      -
T Consensus        85 G   85 (321)
T PTZ00325         85 G   85 (321)
T ss_pred             C
Confidence            4

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.75  E-value=0.088  Score=52.21  Aligned_cols=110  Identities=13%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCC--CHHHHhhcCCEEEEec--C-CChhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYP--SVVELASNCHILVVAC--P-LTEET  209 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~--~l~e~~~~aDvV~~~l--p-~~~~t  209 (313)
                      .+.++++.|+|+|..|+++|+.|...|++|.++|+......      +.....  ...+.+.++|+|+..-  | ..|..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            47889999999999999999999999999999997543211      221111  1234456789887663  2 22221


Q ss_pred             h-------cccCHHHHhc-------c-CCC-cEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          210 R-------HIINREVIDA-------L-GPK-GVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       210 ~-------~li~~~~l~~-------m-k~g-a~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      .       .++.+-.+..       + ++. .+-|--+-|+.....-+.+.|+....
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~  148 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGF  148 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence            1       1222222321       1 132 34466667888888888888876543

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=93.75  E-value=0.52  Score=44.46  Aligned_cols=93  Identities=13%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc-------cc--------cCCCHHHHhhcCCEEE
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK-------YK--------YYPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~-------~~--------~~~~l~e~~~~aDvV~  200 (313)
                      +|+|||. |.+|..+|..|...|.       ++..+|+.+..  ..+       ..        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999987554       48889985442  111       00        0114467899999999


Q ss_pred             EecCCC--h-hhhc-cc--C----H---HHHhcc-CCCcEEEEcCCCccccHHH
Q 021388          201 VACPLT--E-ETRH-II--N----R---EVIDAL-GPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       201 ~~lp~~--~-~t~~-li--~----~---~~l~~m-k~ga~lIn~~rg~~vd~~a  240 (313)
                      ++.-..  + +|+. ++  |    +   ..+... ++.+++|.++  +.+|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            876332  1 1111 11  1    1   123334 4778888876  4455444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.74  E-value=0.32  Score=46.28  Aligned_cols=85  Identities=20%  Similarity=0.344  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------cccccc---CC---CHHHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKY---YP---SVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~---~~---~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|++|.|.|.|.+|..+++.++.+|.+|++.+.+.++      ..++..   ..   .+.++....|+|+-++... .+ 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-HA-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-HH-
Confidence            5789999999999999999999999998877654432      112211   11   1222333467777665421 11 


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        + .+.+..++++..++.++.
T Consensus       261 --~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeCC
Confidence              1 345677788888777764

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.69  E-value=0.11  Score=45.99  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=46.2

Q ss_pred             EEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-------cccc-------cCCCHHHHhhcCCEEEEecCCC
Q 021388          147 VGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-------LKYK-------YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       147 igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------~~~~-------~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      |.|+|. |.+|+.+++.|...|++|.+..|.....       .+..       ..+++.+.++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678885 9999999999999999999998876421       1211       1235677899999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.65  E-value=0.31  Score=45.86  Aligned_cols=88  Identities=13%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CC-CCEEEecCCCCCcccc---ccCCCHHHHhh--cCCEEEEecCCChhhhcccCH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FS-CPINYYSRTEKPNLKY---KYYPSVVELAS--NCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G-~~V~~~~~~~~~~~~~---~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .|.++.|+|.|.+|...++.++. +| .+|++.++++++...+   ......+++..  ..|+|+-++... .+...+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence            47899999999999999998885 54 5799998876532211   11111222222  368888777631 011112 4


Q ss_pred             HHHhccCCCcEEEEcCC
Q 021388          216 EVIDALGPKGVLINIGR  232 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~r  232 (313)
                      ..+..++++..++.+|-
T Consensus       241 ~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         241 QIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHhCcCCcEEEEEee
Confidence            56778899988887764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.63  E-value=0.22  Score=46.17  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCCCEE-EecCCCCCc-------cccc-cCCCHHHHhh--cCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSCPIN-YYSRTEKPN-------LKYK-YYPSVVELAS--NCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~-------~~~~-~~~~l~e~~~--~aDvV~~~lp~~~~  208 (313)
                      .++||||.|+||+..+..+.. -++++. ++|++++..       .+.. .+.+.++++.  +.|+|+.++|...+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H   77 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH   77 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence            479999999999988766654 456754 566655421       1222 2457888875  57889999985433

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.61  E-value=6.7  Score=39.82  Aligned_cols=185  Identities=17%  Similarity=0.175  Sum_probs=117.7

Q ss_pred             hcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHh--
Q 021388           88 EKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA--  165 (313)
Q Consensus        88 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~--  165 (313)
                      +..|++.|..=   .-+|=-+++-+|+.+|-.                   +..|...+|.|+|.|..|-.+|+.+..  
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~-------------------g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT-------------------GGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHHh-------------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            34778888743   245666788888887733                   346888999999999999999999886  


Q ss_pred             ---CCC-------CEEEecCCCC----Cc--c-c--------cccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHHH
Q 021388          166 ---FSC-------PINYYSRTEK----PN--L-K--------YKYYPSVVELASN--CHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       166 ---~G~-------~V~~~~~~~~----~~--~-~--------~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                         .|.       +++.+|+..-    ..  . .        .....+|.|+++.  .|+++-+--    .-++++++.+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi  420 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTFTKEVL  420 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCCCHHHH
Confidence               476       6888886431    11  1 0        1123589999998  898875431    2367999999


Q ss_pred             hccC---CCcEEEEcCCCccc---cHHHHHHHHHhCCeeEEEecCCCCCCCCC-------CcccCCCceEEccCCCCCcH
Q 021388          219 DALG---PKGVLINIGRGPHV---DERELVSALVEGRLGGAGLDVFENEPHVP-------EELFGLENVVLMPHVGSGTV  285 (313)
Q Consensus       219 ~~mk---~ga~lIn~~rg~~v---d~~al~~al~~~~l~ga~lDV~~~Ep~~~-------~~L~~~pnv~lTPH~a~~t~  285 (313)
                      +.|.   +.+++.=.|.-..-   ..++.. ...+|+...|.     .-|.++       ...=+..|+++-|=++-..-
T Consensus       421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~-~~T~G~ai~At-----GSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal  494 (581)
T PLN03129        421 EAMASLNERPIIFALSNPTSKAECTAEEAY-TWTGGRAIFAS-----GSPFDPVEYNGKTFHPGQANNAYIFPGIGLGAL  494 (581)
T ss_pred             HHHHhcCCCCEEEECCCCCCCcCcCHHHHH-HhhcCCEEEEe-----CCCCCCeeeCCeeecCccccceeeccchhhHHH
Confidence            9995   88999888876522   223333 33446643221     122221       12346788999998764432


Q ss_pred             HH-----HHHHHHHHHHHHHHHHc
Q 021388          286 ET-----RKTMADLVLGNLEAHFL  304 (313)
Q Consensus       286 ~~-----~~~~~~~~~~nl~~~~~  304 (313)
                      .+     -+.|.-.+++-|.++..
T Consensus       495 ~~~a~~Itd~m~~aAA~aLA~~v~  518 (581)
T PLN03129        495 LSGAIRVTDDMLLAAAEALAAQVT  518 (581)
T ss_pred             hcCCcCCCHHHHHHHHHHHHHhCC
Confidence            22     25555666666666554

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.57  E-value=0.24  Score=45.85  Aligned_cols=62  Identities=16%  Similarity=0.125  Sum_probs=44.7

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------cc-------ccCCCHHHHhhcCCEEEE
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------KY-------KYYPSVVELASNCHILVV  201 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~~-------~~~~~l~e~~~~aDvV~~  201 (313)
                      .|++|.|.| .|-||+.+++.|...|++|.+.+|+.....             ..       .....++++++.+|+|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            468999999 699999999999999999988776543210             00       012346677888998876


Q ss_pred             ecC
Q 021388          202 ACP  204 (313)
Q Consensus       202 ~lp  204 (313)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.56  E-value=0.39  Score=45.06  Aligned_cols=89  Identities=18%  Similarity=0.336  Sum_probs=56.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCcc------c---ccc--C---CCHHHHhhcCCEEEEecCC--
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNL------K---YKY--Y---PSVVELASNCHILVVACPL--  205 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~------~---~~~--~---~~l~e~~~~aDvV~~~lp~--  205 (313)
                      ++|+|||. |.+|..+|-.|...|.  ++..+|.......      .   ...  .   +++.+.+++||+|+++...  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            48999999 9999999999987775  6888887621100      0   011  1   2235779999999998743  


Q ss_pred             Ch-hhhc-cc--CH-------HHHhccCCCcEEEEcCCC
Q 021388          206 TE-ETRH-II--NR-------EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       206 ~~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg  233 (313)
                      .| +++. ++  |.       +.+..-.|.+++|+++..
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            22 2222 11  11       223334689999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.49  E-value=0.42  Score=47.01  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhC-------CC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAF-------SC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~-------G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV  199 (313)
                      .+|+|||. |.+|..+|-.|...       |.  ++..+|+..+...+               .....+-.+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            48999999 99999999998765       44  67888887764322               01012345788999999


Q ss_pred             EEecCC--Chh-hhc-cc--C----H---HHHhc-cCCCcEEEEcCCCccccHHHHHH
Q 021388          200 VVACPL--TEE-TRH-II--N----R---EVIDA-LGPKGVLINIGRGPHVDERELVS  243 (313)
Q Consensus       200 ~~~lp~--~~~-t~~-li--~----~---~~l~~-mk~ga~lIn~~rg~~vd~~al~~  243 (313)
                      ++....  .+. ++. ++  |    +   ..+.. ..+.+++|.++  +.+|.-..+-
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~  236 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC  236 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence            998643  221 111 11  1    1   12333 46788998887  5555555444

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.46  E-value=0.31  Score=45.73  Aligned_cols=88  Identities=15%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCcc------c---cccC-----CCHHHHhhcCCEEEEecCCC--
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNL------K---YKYY-----PSVVELASNCHILVVACPLT--  206 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~------~---~~~~-----~~l~e~~~~aDvV~~~lp~~--  206 (313)
                      +|+|||. |.+|..+|-.|...|.  ++..+|+.+....      .   ....     +++.+.+++||+|+++....  
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999999886665  6888997662110      0   0001     12467899999999987432  


Q ss_pred             h-hhhc-cc--CH-------HHHhccCCCcEEEEcCCC
Q 021388          207 E-ETRH-II--NR-------EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       207 ~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg  233 (313)
                      + .++. ++  |.       ..+..-.|.+++|+++..
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            1 1111 11  11       123334689999998654

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=93.32  E-value=0.51  Score=40.83  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=47.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccc---cc-------cCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLK---YK-------YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---~~-------~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|||. |.+|+.+++-++..|++|+++-|++.+...   ..       ..+++.+.+..-|+|+.+...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            58999985 999999999999999999999888765422   11       123445678899999998743

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=93.17  E-value=0.59  Score=44.36  Aligned_cols=62  Identities=13%  Similarity=0.120  Sum_probs=46.3

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHH-hCCCCEEEecCCCCC-c---------cc--cccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAE-AFSCPINYYSRTEKP-N---------LK--YKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~-~~G~~V~~~~~~~~~-~---------~~--~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+.|++|+++|=   +++..+++..+. .+|++|.+..|..-. .         .+  .....++++.++++|+|..-
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            488999999998   588888888766 459999888765421 1         01  22347899999999999873

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.10  E-value=0.15  Score=50.47  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------cccccC--CCHHHHhhcCCEEEEecCCC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYY--PSVVELASNCHILVVACPLT  206 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +..+.++++.|||.|.+|.++|+.|+..|++|.++|+.....          .+....  ... +....+|+|+.+....
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence            345788999999999999999999999999999998654211          111111  111 1345689998876332


Q ss_pred             hhhhc----------ccCH-HHH-hccCC----CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          207 EETRH----------IINR-EVI-DALGP----KGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       207 ~~t~~----------li~~-~~l-~~mk~----ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      +.+..          ++++ +++ ..+.+    ..+-|--+.|......-+...|+...
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            22221          2322 333 23422    23556666788888888888887643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.10  E-value=0.14  Score=51.70  Aligned_cols=37  Identities=11%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      -.|+++.|.|. |.||+.+++.|...|++|.+++|+.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            56789999986 99999999999999999999888654

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=93.07  E-value=0.55  Score=45.50  Aligned_cols=63  Identities=11%  Similarity=0.161  Sum_probs=48.2

Q ss_pred             ccCCCEEEEEcC-----C---hHHHHHHHHHHhCCCCEEEecCCCCC---c-----------cc--cccCCCHHHHhhcC
Q 021388          141 KFTGKTVGIIGL-----G---RIGMAVAKRAEAFSCPINYYSRTEKP---N-----------LK--YKYYPSVVELASNC  196 (313)
Q Consensus       141 ~l~g~~igiiG~-----G---~iG~~iA~~l~~~G~~V~~~~~~~~~---~-----------~~--~~~~~~l~e~~~~a  196 (313)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..|..-.   .           .+  .....++++.++.+
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            478999999985     5   57799999999999999988875321   1           01  22357899999999


Q ss_pred             CEEEEec
Q 021388          197 HILVVAC  203 (313)
Q Consensus       197 DvV~~~l  203 (313)
                      |+|..-.
T Consensus       264 DvVYtd~  270 (395)
T PRK07200        264 DIVYPKS  270 (395)
T ss_pred             CEEEEcC
Confidence            9998764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=93.06  E-value=0.35  Score=52.12  Aligned_cols=66  Identities=29%  Similarity=0.344  Sum_probs=53.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc--------------------------cccc--------cC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN--------------------------LKYK--------YY  186 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------------------~~~~--------~~  186 (313)
                      .-.|++|+|||-|..|-+.|..|...|+.|.+|.|+....                          +|..        ..
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            4589999999999999999999999999999998865420                          1111        13


Q ss_pred             CCHHHHhhcCCEEEEecCCC
Q 021388          187 PSVVELASNCHILVVACPLT  206 (313)
Q Consensus       187 ~~l~e~~~~aDvV~~~lp~~  206 (313)
                      .+++++.+.-|.|+++...|
T Consensus      1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             ccHHHHhhccCeEEEEeCCC
Confidence            57999999999999998654

>PRK10537 voltage-gated potassium channel; Provisional

Probab=92.89  E-value=0.32  Score=47.13  Aligned_cols=83  Identities=4%  Similarity=-0.076  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---cccc----cCCC---HHH-HhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---LKYK----YYPS---VVE-LASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---~~~~----~~~~---l~e-~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ...++-|+|+|.+|+.+++.|+..|.++.+.+.+....   .+..    ...+   +++ -+++|+.|+.+.+.++++..
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~  318 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF  318 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence            35689999999999999999999999988877542211   1111    1122   222 25688888888876655443


Q ss_pred             ccCHHHHhccCCCcEE
Q 021388          212 IINREVIDALGPKGVL  227 (313)
Q Consensus       212 li~~~~l~~mk~ga~l  227 (313)
                      +  ....+.+.|+..+
T Consensus       319 i--vL~ar~l~p~~kI  332 (393)
T PRK10537        319 V--VLAAKEMSSDVKT  332 (393)
T ss_pred             H--HHHHHHhCCCCcE
Confidence            3  2334455554333

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.86  E-value=0.29  Score=46.55  Aligned_cols=85  Identities=19%  Similarity=0.307  Sum_probs=58.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------ccccC----C-CH----HHHhh--cCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KYKYY----P-SV----VELAS--NCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~~~~----~-~l----~e~~~--~aDvV~~~lp~~  206 (313)
                      .++.|+|.|.||.-.+..++.+|. +|++.|+++.+..      +....    . +.    .++..  .+|+++-|.. .
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~  248 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-S  248 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-C
Confidence            399999999999999999999997 5778888765322      11111    1 11    12222  4899999887 3


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      +.+   + .+.+...+++..++.+|-..
T Consensus       249 ~~~---~-~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         249 PPA---L-DQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             HHH---H-HHHHHHhcCCCEEEEEeccC
Confidence            322   2 56778889999988888653

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=92.85  E-value=0.36  Score=43.12  Aligned_cols=140  Identities=14%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------------cc--------------cccCCCHHHHhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------------LK--------------YKYYPSVVELAS  194 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------------~~--------------~~~~~~l~e~~~  194 (313)
                      .+|||+|-|.+|++.|....+.|++|..||..++..                .+              .....+++|+.+
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk   83 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK   83 (313)
T ss_pred             cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence            589999999999999999999999999999876521                01              112467888888


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV  274 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv  274 (313)
                      .|=.|-=|+|..-+-+.-+ -..+..+-....++..|+.......--.......+..    =++   |.  .|-+-.|=|
T Consensus        84 ~Ai~iQEcvpE~L~lkk~l-y~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~l----vaH---Pv--NPPyfiPLv  153 (313)
T KOG2305|consen   84 GAIHIQECVPEDLNLKKQL-YKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCL----VAH---PV--NPPYFIPLV  153 (313)
T ss_pred             hhhhHHhhchHhhHHHHHH-HHHHHHhcCCceEEeccccccChHHHhhhhhhhhhee----Eec---CC--CCCcccchh
Confidence            8877777777443333222 1223334445555665665544443333333333332    112   21  122224445


Q ss_pred             EEccCCCCCcHHHHHHHHHHH
Q 021388          275 VLMPHVGSGTVETRKTMADLV  295 (313)
Q Consensus       275 ~lTPH~a~~t~~~~~~~~~~~  295 (313)
                      =+-|| -|.+.++.++....+
T Consensus       154 ElVPa-PwTsp~tVdrt~~lM  173 (313)
T KOG2305|consen  154 ELVPA-PWTSPDTVDRTRALM  173 (313)
T ss_pred             eeccC-CCCChhHHHHHHHHH
Confidence            56665 345556666655543

>PRK10206 putative oxidoreductase; Provisional

Probab=92.84  E-value=0.22  Score=47.34  Aligned_cols=63  Identities=16%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             EEEEEcCChHHHH-HHHHHHh--CCCCEE-EecCCCCCcc-----c-cccCCCHHHHhh--cCCEEEEecCCChh
Q 021388          146 TVGIIGLGRIGMA-VAKRAEA--FSCPIN-YYSRTEKPNL-----K-YKYYPSVVELAS--NCHILVVACPLTEE  208 (313)
Q Consensus       146 ~igiiG~G~iG~~-iA~~l~~--~G~~V~-~~~~~~~~~~-----~-~~~~~~l~e~~~--~aDvV~~~lp~~~~  208 (313)
                      ++||||+|.+++. .+..+..  -++++. ++|++++...     + ...+.+++++++  +.|+|++++|...+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            7999999998753 3454432  357765 6787653221     1 234578999995  57999999995543

>PRK08265 short chain dehydrogenase; Provisional

Probab=92.82  E-value=0.47  Score=42.68  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.++++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999986 89999999999999999999988754

>PLN02214 cinnamoyl-CoA reductase

Probab=92.81  E-value=0.33  Score=45.78  Aligned_cols=64  Identities=17%  Similarity=0.166  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc------------cccc-------cCCCHHHHhhcCCEEE
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN------------LKYK-------YYPSVVELASNCHILV  200 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~~~-------~~~~l~e~~~~aDvV~  200 (313)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+..|+.+..            ....       ...+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            367899999997 9999999999999999999888754321            0010       1224566778899887


Q ss_pred             EecC
Q 021388          201 VACP  204 (313)
Q Consensus       201 ~~lp  204 (313)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            6653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.69  E-value=0.35  Score=46.84  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ..|++|+|+|+.          +-+..+++.|...|.+|.+|||......  +.....++.++++.||+|++..-
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRM  368 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcCC
Confidence            368999999994          3677899999999999999999754322  34456789999999999988764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.61  E-value=0.26  Score=46.51  Aligned_cols=36  Identities=17%  Similarity=0.127  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +++++|.|.|. |-||+.+++.|...|.+|+++|+..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            67789999985 9999999999999999999998743

>PRK08328 hypothetical protein; Provisional

Probab=92.59  E-value=0.16  Score=45.49  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            458999999999999999999999999984 7777754

>PRK14852 hypothetical protein; Provisional

Probab=92.58  E-value=1.1  Score=48.09  Aligned_cols=155  Identities=13%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC-------------Cccc-------------------cc---
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK-------------PNLK-------------------YK---  184 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~-------------~~~~-------------------~~---  184 (313)
                      .|..++|+|+|+|.+|..+++.|...|. ++...|...-             ...|                   ..   
T Consensus       329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            5899999999999999999999999998 4666653210             0000                   00   


Q ss_pred             ---cCCCHHHHhhcCCEEEEecCCCh-hhhcccCHHHHhccCCCcEEEEcCCCc------------cccH---------H
Q 021388          185 ---YYPSVVELASNCHILVVACPLTE-ETRHIINREVIDALGPKGVLINIGRGP------------HVDE---------R  239 (313)
Q Consensus       185 ---~~~~l~e~~~~aDvV~~~lp~~~-~t~~li~~~~l~~mk~ga~lIn~~rg~------------~vd~---------~  239 (313)
                         ...+.+++++.+|+|+-++-... +.+..++....   +.+--+|..+-.+            ....         .
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~f~~~~~~p  485 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCALLVFMPGGMNFDSYFGIDDDTP  485 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeEEEEcCCCCCHHHhCCCCCCCc
Confidence               11356778888999888775321 23333333322   2333344443211            1100         0


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      .+...++      ..+   ...|.+-. ..++..+|-+.=+.+-.+.-+..-....+.....+++-|+.
T Consensus       486 ~~~~~~~------~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~  545 (989)
T PRK14852        486 PMEGYLR------FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR  545 (989)
T ss_pred             hHhhhhh------hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence            1111111      011   11222111 23466677777788888888899999999999999998883

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.57  E-value=0.97  Score=42.86  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHh--------CC--CCEEE-ecCCCCC--cccc---------------c-c-------CCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA--------FS--CPINY-YSRTEKP--NLKY---------------K-Y-------YPS  188 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~--------~G--~~V~~-~~~~~~~--~~~~---------------~-~-------~~~  188 (313)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.+ .|++...  +.+.               . .       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            479999999999999998876        67  45443 3433210  1110               0 0       115


Q ss_pred             HHHHh--hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee-EEEecCCCCCCC
Q 021388          189 VVELA--SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG-GAGLDVFENEPH  263 (313)
Q Consensus       189 l~e~~--~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~-ga~lDV~~~Ep~  263 (313)
                      .++++  ..+|+|+-+.+.. ...    .-....++.|.-+|-...|.+ ...++|.+..++++.. .+.--|...-|.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            67776  4799998777522 222    223445667777776666544 3556666666555443 233445555564

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.54  E-value=0.28  Score=46.90  Aligned_cols=61  Identities=13%  Similarity=0.101  Sum_probs=43.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cC---CCHHHHhhcCCEEEEec
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YY---PSVVELASNCHILVVAC  203 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~---~~l~e~~~~aDvV~~~l  203 (313)
                      .+|+|.|.|. |.||+.+++.|...|++|.+.+|......     ...    ..   .++.+++.++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5689999987 99999999999999999999987543110     011    01   12344567899887654

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=92.54  E-value=0.59  Score=43.79  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             EEEEEc-CChHHHHHHHHHHhCC-CCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc-cC
Q 021388          146 TVGIIG-LGRIGMAVAKRAEAFS-CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA-LG  222 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~-mk  222 (313)
                      +|+|+| -|-.|..+.++|.... +++.....+..    .. ..+.+++++++|++++++|... +.     ++... .+
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~-~~~~~~~~~~~D~vFlalp~~~-s~-----~~~~~~~~   71 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD-AAERAKLLNAADVAILCLPDDA-AR-----EAVSLVDN   71 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC-cCCHhHhhcCCCEEEECCCHHH-HH-----HHHHHHHh
Confidence            789997 5889999999998763 35544432221    11 1245677789999999999542 22     22222 24


Q ss_pred             CCcEEEEcC
Q 021388          223 PKGVLINIG  231 (313)
Q Consensus       223 ~ga~lIn~~  231 (313)
                      .|..+||.|
T Consensus        72 ~g~~VIDlS   80 (310)
T TIGR01851        72 PNTCIIDAS   80 (310)
T ss_pred             CCCEEEECC
Confidence            688899988

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK12937 short chain dehydrogenase; Provisional

Probab=92.53  E-value=0.51  Score=41.53  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      +.++++.|.| .|.+|+.+|+.|...|++|+...++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            6789999998 4999999999999999998776553

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.52  E-value=0.32  Score=43.38  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++.|+++.|.| .|.||+.+|+.|...|++|.+.++++.
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            58899999998 578999999999999999998887654

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.46  E-value=0.46  Score=44.56  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCH-HHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSV-VELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l-~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      .|.++.|.|.|.+|...++.++..|++|++.++++++.     .++...-+. ++.....|+++.+.... .   .+ ..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence            47899999999999999999999999999888776532     122111110 11112357666655432 1   22 55


Q ss_pred             HHhccCCCcEEEEcCC
Q 021388          217 VIDALGPKGVLINIGR  232 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~r  232 (313)
                      .++.++++..++.+|.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            7788899999888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.45  E-value=0.34  Score=43.19  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|.+.+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999985 89999999999999999999988754

>PRK06398 aldose dehydrogenase; Validated

Probab=92.43  E-value=0.57  Score=42.05  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            478999999985 68999999999999999999988754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.41  E-value=0.3  Score=44.01  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCC
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      ++.||++.|.|.   +.||+++|+.+...|++|....++
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            367899999997   489999999999999998766543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.40  E-value=0.29  Score=47.31  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +....+++|.|+|. |.||+.+++.|...|++|.+++|+..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            34567889999985 99999999999999999999988653

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.40  E-value=0.79  Score=42.48  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTE  177 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~  177 (313)
                      ..|...+|.|+|+|.+|..+|+.|...|.+ +..+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            358899999999999999999999999985 88888643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=92.38  E-value=0.37  Score=45.48  Aligned_cols=59  Identities=8%  Similarity=0.021  Sum_probs=42.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhCC-------CCEEEecCCCCC--cccc----c-----------cCCCHHHHhhcCCEEE
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAFS-------CPINYYSRTEKP--NLKY----K-----------YYPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~G-------~~V~~~~~~~~~--~~~~----~-----------~~~~l~e~~~~aDvV~  200 (313)
                      +|+|+|. |.+|..++..|...+       .++..+|+.+..  ..+.    .           ...++.+.++.||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            6999999 999999999998744       479999985421  1110    0           1245668899999998


Q ss_pred             EecC
Q 021388          201 VACP  204 (313)
Q Consensus       201 ~~lp  204 (313)
                      .+.-
T Consensus        84 ~tAG   87 (325)
T cd01336          84 LVGA   87 (325)
T ss_pred             EeCC
Confidence            8763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.37  E-value=1.2  Score=38.37  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..|.|+.+-+-|.|. ||+.+.+.|.+.|.+|+++.|.+.
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a   42 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA   42 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH
Confidence            358899999999884 999999999999999999999875

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=92.28  E-value=0.47  Score=44.05  Aligned_cols=62  Identities=21%  Similarity=0.134  Sum_probs=44.0

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc---------c----cc-------ccCCCHHHHhhcCCEEEE
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN---------L----KY-------KYYPSVVELASNCHILVV  201 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~----~~-------~~~~~l~e~~~~aDvV~~  201 (313)
                      .||++.|.| .|.||+.+++.|...|++|.+..++....         .    ..       ....+++++++..|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            468999998 59999999999999999998776554311         0    01       112345667888998877


Q ss_pred             ecC
Q 021388          202 ACP  204 (313)
Q Consensus       202 ~lp  204 (313)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            664

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.24  E-value=0.31  Score=43.69  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCC
Q 021388          141 KFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .+.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            4789999999985   79999999999999999988775

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=92.22  E-value=0.43  Score=44.81  Aligned_cols=63  Identities=8%  Similarity=0.102  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-cccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+.|++|++||- +++.++++..+..+|++|.+..|..-..            .+ .....++++.++.+|+|..-.
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~  226 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT  226 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence            378999999998 6899999999999999999888754210            01 122468999999999998743

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=92.12  E-value=0.48  Score=44.95  Aligned_cols=83  Identities=12%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHh--CCC-CEEEecCC--CCCcccc----ccCCCHHHH-hhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEA--FSC-PINYYSRT--EKPNLKY----KYYPSVVEL-ASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~--~G~-~V~~~~~~--~~~~~~~----~~~~~l~e~-~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+.+|+|||. |..|+.+.+.|..  +-. ++..+...  ..+...+    ....++++. +.++|++++++|...    
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~----   78 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREA----   78 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHH----
Confidence            4568999997 9999999999988  432 45444322  2111111    111244443 378999999998442    


Q ss_pred             ccCHHHHhcc-CCCcEEEEcC
Q 021388          212 IINREVIDAL-GPKGVLINIG  231 (313)
Q Consensus       212 li~~~~l~~m-k~ga~lIn~~  231 (313)
                        ..++...+ +.|+.+||.|
T Consensus        79 --s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         79 --SAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             --HHHHHHHHHHCCCEEEECC
Confidence              23333333 5789999998

>PRK14851 hypothetical protein; Provisional

Probab=92.09  E-value=0.37  Score=49.96  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEec
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYS  174 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~  174 (313)
                      ..|++++|+|+|+|.+|..++..|...|. ++...|
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD   74 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIAD   74 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEc
Confidence            45999999999999999999999999998 466665

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.08  E-value=0.38  Score=45.10  Aligned_cols=63  Identities=19%  Similarity=0.178  Sum_probs=44.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcccc---------------ccCC-CHHHHhhcCCEEEEec--C
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNLKY---------------KYYP-SVVELASNCHILVVAC--P  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~~~---------------~~~~-~l~e~~~~aDvV~~~l--p  204 (313)
                      ++|+|||.|.+|+++|-.|...  +-++..+|...+...+.               .... .--+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            4899999999999999999644  44788999885433221               0011 1146688999999987  5


Q ss_pred             CCh
Q 021388          205 LTE  207 (313)
Q Consensus       205 ~~~  207 (313)
                      .-|
T Consensus        81 rKp   83 (313)
T COG0039          81 RKP   83 (313)
T ss_pred             CCC
Confidence            444

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.08  E-value=0.76  Score=43.77  Aligned_cols=82  Identities=13%  Similarity=0.285  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHh-CCCC---EEEec-C-CCCCccccc----c--CCCHHHHhhcCCEEEEecCCChhh
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEA-FSCP---INYYS-R-TEKPNLKYK----Y--YPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~-~G~~---V~~~~-~-~~~~~~~~~----~--~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      .+.+|||||. |..|+.+.+.|.. -.+.   +..+. . +..+...+.    .  ..+.++ +.+.|++++++|.. .+
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s   81 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS   81 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence            3468999997 9999999999984 5565   43333 2 222221111    0  113333 47899999999844 22


Q ss_pred             hcccCHHHHhc-cCCCcEEEEcC
Q 021388          210 RHIINREVIDA-LGPKGVLINIG  231 (313)
Q Consensus       210 ~~li~~~~l~~-mk~ga~lIn~~  231 (313)
                           +++... .+.|+.+||.|
T Consensus        82 -----~~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         82 -----RQFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             -----HHHHHHHHHCCCEEEECc
Confidence                 333332 35789999988

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.08  E-value=0.37  Score=42.55  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++.++++.|+|. |.+|+.+++.|...|++|++.+|++.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999985 89999999999999999999998764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.08  E-value=0.18  Score=44.05  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468999999999999999999999999985 7788754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.02  E-value=0.67  Score=44.41  Aligned_cols=35  Identities=34%  Similarity=0.608  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .|+++.|.|.|.+|..+++.++.+|.+|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            57899999999999999999999999998887653

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.97  E-value=0.2  Score=43.77  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            458999999999999999999999999985 7787754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.95  E-value=0.18  Score=47.00  Aligned_cols=37  Identities=35%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      .|++++|.|+|.+|.++++-++++|+ ++++.|.++++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            68999999999999999999999998 79999988764

>PRK08324 short chain dehydrogenase; Validated

Probab=91.94  E-value=0.3  Score=50.72  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..+.|+++.|.| .|.||+.+++.|...|++|++.+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            347899999999 599999999999999999999998764

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.91  E-value=0.25  Score=48.34  Aligned_cols=107  Identities=18%  Similarity=0.107  Sum_probs=66.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccC--CCHHHHhhcCCEEEEecCCChhhhc--
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYY--PSVVELASNCHILVVACPLTEETRH--  211 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~e~~~~aDvV~~~lp~~~~t~~--  211 (313)
                      +.++++.|+|+|..|.+.++.|+..|++|.++|.......      +....  ....+.++..|+|+. -|.-+....  
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence            5688999999999999999999999999999996543210      11111  112234567887655 443322111  


Q ss_pred             ---------ccCH-HHHhcc-CCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          212 ---------IINR-EVIDAL-GPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       212 ---------li~~-~~l~~m-k~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                               ++.+ +++..+ +...+-|--+.|......-+.+.|+...
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g  131 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG  131 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence                     2222 344333 3234446666788888888888887643

>PRK06523 short chain dehydrogenase; Provisional

Probab=91.88  E-value=0.69  Score=41.29  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .++.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4588999999985 89999999999999999999988654

>PRK15076 alpha-galactosidase; Provisional

Probab=91.87  E-value=0.16  Score=49.90  Aligned_cols=109  Identities=12%  Similarity=0.068  Sum_probs=67.2

Q ss_pred             CEEEEEcCChHHHHHHH--HH---HhC-CCCEEEecCCCCCcc-------------c----cccCCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIGLGRIGMAVAK--RA---EAF-SCPINYYSRTEKPNL-------------K----YKYYPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~e~~~~aDvV~~  201 (313)
                      ++|+|||.|++|...+-  .+   .++ |.+|..+|..++...             +    .....++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955433  22   233 458999998765321             0    1224577899999999999


Q ss_pred             ecCCC--hhhh-----------------cc----------cC-------HHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388          202 ACPLT--EETR-----------------HI----------IN-------REVIDALGPKGVLINIGRGPHVDERELVSAL  245 (313)
Q Consensus       202 ~lp~~--~~t~-----------------~l----------i~-------~~~l~~mk~ga~lIn~~rg~~vd~~al~~al  245 (313)
                      +.-..  +.-+                 ..          -+       .+.+....|++++||.+...-+-..++. -+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            98542  1110                 01          00       1223445689999999887655555665 23


Q ss_pred             HhCCeeEEE
Q 021388          246 VEGRLGGAG  254 (313)
Q Consensus       246 ~~~~l~ga~  254 (313)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            445566543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=91.80  E-value=0.32  Score=44.87  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +++.|.| .|.+|+.+++.|...|++|.+.+|+.....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4688898 599999999999999999999988654321     111       11245667888998877654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=91.77  E-value=0.51  Score=44.80  Aligned_cols=79  Identities=18%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             EEEEEc-CChHHHHHHHHHHhCCCCE---EEecCCCC--Ccccc---c-cC--CCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          146 TVGIIG-LGRIGMAVAKRAEAFSCPI---NYYSRTEK--PNLKY---K-YY--PSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~~~G~~V---~~~~~~~~--~~~~~---~-~~--~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +|+|+| .|.+|+.+++.|...|+.+   .++.+...  +....   . ..  .+. +.+.++|+|+.|+|... +.   
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~-s~---   75 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSV-SK---   75 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHH-HH---
Confidence            479999 8999999999999877653   33333322  11111   0 11  122 33578999999998542 22   


Q ss_pred             CHHHHh-ccCCCcEEEEcC
Q 021388          214 NREVID-ALGPKGVLINIG  231 (313)
Q Consensus       214 ~~~~l~-~mk~ga~lIn~~  231 (313)
                        +... .++.|+++||.+
T Consensus        76 --~~a~~~~~~G~~VID~s   92 (339)
T TIGR01296        76 --EFAPKAAKCGAIVIDNT   92 (339)
T ss_pred             --HHHHHHHHCCCEEEECC
Confidence              2222 235688899887

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.76  E-value=0.66  Score=43.34  Aligned_cols=85  Identities=21%  Similarity=0.368  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---CCC---HHHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---YPS---VVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~---l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .|.++.|.|.|.+|+.+++.++.+|++|++.+++.+...     +...   ..+   ..+.-...|+++-+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            467899999999999999999999999998887653211     1110   000   1112244677776665321    


Q ss_pred             ccCHHHHhccCCCcEEEEcCC
Q 021388          212 IINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~r  232 (313)
                       ...+.+..++++..+++++.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             12445666777777777664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=91.75  E-value=1  Score=43.55  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=56.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC-C----E--EEe--cCCCCCccc---------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC-P----I--NYY--SRTEKPNLK---------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~-~----V--~~~--~~~~~~~~~---------------~~~~~~l~e~~~~aDvV  199 (313)
                      .+|+|||. |.+|..+|-.+...|. .    |  ..+  |+..+...+               .....+-.+.+++||+|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV  124 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA  124 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence            58999999 9999999999976554 2    2  233  665543221               01112344778999999


Q ss_pred             EEecCC--Ch-hhhc--------cc---CHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388          200 VVACPL--TE-ETRH--------II---NREVIDALGPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       200 ~~~lp~--~~-~t~~--------li---~~~~l~~mk~ga~lIn~~rg~~vd~~al~  242 (313)
                      +++...  .+ .++.        ++   .....+.-++.+++|.++  +.+|.-..+
T Consensus       125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v  179 (387)
T TIGR01757       125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALI  179 (387)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHH
Confidence            997632  22 1221        11   112222244788888876  445544433

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=91.71  E-value=1.5  Score=40.73  Aligned_cols=130  Identities=15%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             CCCcCChhhh-hhcCcEEEcCCC---CChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcC
Q 021388           77 GLDKVDMVKC-KEKGVRVTNTPD---VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGL  152 (313)
Q Consensus        77 G~d~id~~~~-~~~gI~v~n~~~---~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~  152 (313)
                      ++.|-+++.. +..+|+|.|.=.   .-...+|++.     .+..+                   .+. +.|++++.+|=
T Consensus       107 ~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~-----Ti~E~-------------------~g~-l~g~k~a~vGD  161 (310)
T COG0078         107 GFSHETLEELAKYSGVPVINGLTDEFHPCQALADLM-----TIKEH-------------------FGS-LKGLKLAYVGD  161 (310)
T ss_pred             cccHHHHHHHHHhCCCceEcccccccCcHHHHHHHH-----HHHHh-------------------cCc-ccCcEEEEEcC
Confidence            3444455554 446899999632   2256666652     22111                   122 89999999987


Q ss_pred             C-hHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEecCCC--hhhh---
Q 021388          153 G-RIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVACPLT--EETR---  210 (313)
Q Consensus       153 G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~lp~~--~~t~---  210 (313)
                      | +|+.++......+||+|.+..|..-...              |  .....+.++.++.+|+|..=+...  +..+   
T Consensus       162 gNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~  241 (310)
T COG0078         162 GNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEE  241 (310)
T ss_pred             cchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCcccCcchhhhHH
Confidence            6 6899999999999999988776442110              1  234568999999999998776432  1111   


Q ss_pred             --------cccCHHHHhccCCCcEEEEcC
Q 021388          211 --------HIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       211 --------~li~~~~l~~mk~ga~lIn~~  231 (313)
                              .-+|++.++.-+++++|.-|-
T Consensus       242 ~~~~~~~~yQVn~~lm~~a~~~~ifmHCL  270 (310)
T COG0078         242 RRIAFLPPYQVNEELMALAGPDAIFMHCL  270 (310)
T ss_pred             HHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence                    345677777777777777764

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.60  E-value=0.74  Score=43.82  Aligned_cols=80  Identities=15%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCCC---Cccc----c-------------cc-CCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTEK---PNLK----Y-------------KY-YPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~~---~~~~----~-------------~~-~~~l~e~~~~aDvV~~  201 (313)
                      .+|+|+| .|.+|+.+++.|..+.. ++.++.++..   ....    .             .. ..+.++ +.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence            6899998 99999999999987643 7776622221   1110    0             00 113333 478999999


Q ss_pred             ecCCChhhhcccCHHHHhcc-CCCcEEEEcC
Q 021388          202 ACPLTEETRHIINREVIDAL-GPKGVLINIG  231 (313)
Q Consensus       202 ~lp~~~~t~~li~~~~l~~m-k~ga~lIn~~  231 (313)
                      ++|....      .+....+ +.|..+|+.+
T Consensus        83 a~p~~~s------~~~~~~~~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDVA------GEVEEEFAKAGKPVFSNA  107 (349)
T ss_pred             eCChhHH------HHHHHHHHHCCCEEEECC
Confidence            9985432      2222322 4577677766

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=91.59  E-value=1  Score=45.20  Aligned_cols=91  Identities=13%  Similarity=0.094  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhCC-CCEEEecCCCCC-cc---------c--cccCCCHHHHhhcCCEE--EE-
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAFS-CPINYYSRTEKP-NL---------K--YKYYPSVVELASNCHIL--VV-  201 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G-~~V~~~~~~~~~-~~---------~--~~~~~~l~e~~~~aDvV--~~-  201 (313)
                      .+.|++|+++|=   |++.++++..+..|| ++|.+..+..-. ..         +  .....++++.++++|+.  +. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            478999999998   589999999999998 899888764421 11         2  22357899999999952  23 


Q ss_pred             ------ecCCC--h---h--hhcccCHHHHhccCCCcEEEEcC
Q 021388          202 ------ACPLT--E---E--TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       202 ------~lp~~--~---~--t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                            ..+..  +   .  -...++++.++.+|++++|.-+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12211  0   0  12346889999999999888766

>PRK05865 hypothetical protein; Provisional

Probab=91.58  E-value=0.86  Score=48.48  Aligned_cols=90  Identities=12%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--ccc-------cCCCHHHHhhcCCEEEEecCCChhh--hcc
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KYK-------YYPSVVELASNCHILVVACPLTEET--RHI  212 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~-------~~~~l~e~~~~aDvV~~~lp~~~~t--~~l  212 (313)
                      ++|.|.|. |.||+.+++.|...|++|.+++++.....  ...       ...++.++++.+|+|+.+.......  .++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            46889985 99999999999999999999988643211  111       1224556788899987766432110  011


Q ss_pred             c-CHHHHhccCCC--cEEEEcCCCc
Q 021388          213 I-NREVIDALGPK--GVLINIGRGP  234 (313)
Q Consensus       213 i-~~~~l~~mk~g--a~lIn~~rg~  234 (313)
                      . ....++.|+..  ..+|.+|...
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            1 12344445432  3688888765

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=91.56  E-value=0.45  Score=44.96  Aligned_cols=29  Identities=28%  Similarity=0.339  Sum_probs=23.5

Q ss_pred             EEEEEcCChHHHHHHHHHHhCC----CCEEEec
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFS----CPINYYS  174 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G----~~V~~~~  174 (313)
                      +|||+|+|+||+.+.+.+...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            4899999999999999987653    6776554

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=91.53  E-value=0.39  Score=45.37  Aligned_cols=39  Identities=18%  Similarity=0.095  Sum_probs=34.2

Q ss_pred             ccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          139 TTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       139 ~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +++.++++|.|.| .|.||+.+++.|...|++|.+.++..
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~   44 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP   44 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5677899999998 69999999999999999999877654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.49  E-value=0.77  Score=42.84  Aligned_cols=85  Identities=22%  Similarity=0.305  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCc-----ccccc---C--CCHH---HHhh--cCCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPN-----LKYKY---Y--PSVV---ELAS--NCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~-----~~~~~---~--~~l~---e~~~--~aDvV~~~lp~~  206 (313)
                      .|.++.|+|.|.+|...++.++.+|++ |++.++++++.     .++..   .  .+.+   ++..  ..|+|+-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            488999999999999999999999999 99888765421     11110   0  1111   2222  467777665422


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      . .   + ...+..++++..++..|.
T Consensus       243 ~-~---~-~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         243 A-A---R-RLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             H-H---H-HHHHHHhhcCCEEEEEcC
Confidence            1 1   1 344666777777777664

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.42  E-value=0.48  Score=43.73  Aligned_cols=49  Identities=18%  Similarity=0.288  Sum_probs=38.2

Q ss_pred             hcCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          127 RSGKWKKGDYKLTTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       127 ~~~~w~~~~~~~~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +.+.|...+.   .++.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         2 ~~~~~~~~~~---~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~   51 (306)
T PRK06197          2 KMTKWTAADI---PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD   51 (306)
T ss_pred             CCCCCCcccc---ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3456653222   3689999999985 89999999999999999988887643

>PRK07825 short chain dehydrogenase; Provisional

Probab=91.41  E-value=0.52  Score=42.51  Aligned_cols=38  Identities=29%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++.|+++.|.|. |.||+.+++.|...|++|.+.+|+++
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~   40 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA   40 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            367889999986 88999999999999999999887653

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.41  E-value=0.36  Score=43.79  Aligned_cols=56  Identities=11%  Similarity=0.121  Sum_probs=40.9

Q ss_pred             EEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcC--CEEEEecC
Q 021388          146 TVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNC--HILVVACP  204 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~a--DvV~~~lp  204 (313)
                      +|.|+| .|.+|+.+++.|...|++|.+.+|...   ......++.++++..  |+|+.+..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCc
Confidence            367888 499999999999999999999988621   111223456667655  99877664

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02427 UDP-apiose/xylose synthase

Probab=91.39  E-value=0.45  Score=45.52  Aligned_cols=65  Identities=11%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             ccccCCCEEEEEc-CChHHHHHHHHHHhC-CCCEEEecCCCCCc-----c-------ccc-------cCCCHHHHhhcCC
Q 021388          139 TTKFTGKTVGIIG-LGRIGMAVAKRAEAF-SCPINYYSRTEKPN-----L-------KYK-------YYPSVVELASNCH  197 (313)
Q Consensus       139 ~~~l~g~~igiiG-~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~-----~-------~~~-------~~~~l~e~~~~aD  197 (313)
                      |..+..++|.|.| .|-||+.+++.|... |++|.+++++....     .       ...       ....+.++++.+|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            4456778999998 599999999999987 58999998754310     0       011       1123566788899


Q ss_pred             EEEEec
Q 021388          198 ILVVAC  203 (313)
Q Consensus       198 vV~~~l  203 (313)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            876544

>PRK06196 oxidoreductase; Provisional

Probab=91.31  E-value=0.59  Score=43.41  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468899999987 78999999999999999999988754

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.29  E-value=1.3  Score=43.44  Aligned_cols=107  Identities=18%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             cCC-CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCc----c--cccc--C-CCHHHHhhcCCEEEEecCC---C
Q 021388          142 FTG-KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPN----L--KYKY--Y-PSVVELASNCHILVVACPL---T  206 (313)
Q Consensus       142 l~g-~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~----~--~~~~--~-~~l~e~~~~aDvV~~~lp~---~  206 (313)
                      +++ +++.|||+|..|.+.++.|...  |++|.++|......    .  +...  - .+. +.+.++|+|+..-.-   .
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~~   82 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNL-EWLLEADLVVTNPGIALAT   82 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCCh-HHhccCCEEEECCCCCCCC
Confidence            455 7899999999999999999877  58899999654321    0  2111  1 122 345789988765422   2


Q ss_pred             hhhh-------cccCH-HHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          207 EETR-------HIINR-EVIDA-LGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       207 ~~t~-------~li~~-~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      |...       .++.+ +++.. ++...+-|--+-|+.....-+...|+...
T Consensus        83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g  134 (438)
T PRK04663         83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG  134 (438)
T ss_pred             HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence            2211       12222 33333 34334456666788888888888887644

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.25  E-value=0.4  Score=43.12  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .+.||++.|.|.   +.||.++|+.|...|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            378899999996   7999999999999999999887653

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=91.23  E-value=0.33  Score=47.23  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=46.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------cc-------ccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------KY-------KYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~-------~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+.||++.|.|. |.||+++++.+...|++|.+.+++.+...        ..       ....++.+.+.+.|+++.+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            578999999987 89999999999999999998887653210        00       01123445677899998765

>PRK08264 short chain dehydrogenase; Validated

Probab=91.22  E-value=0.51  Score=41.48  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      ++.++++.|+| .|.+|+.+|+.|...|+ +|+..+|+.+.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            36788999998 59999999999999999 99999887653

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=91.18  E-value=1.6  Score=41.40  Aligned_cols=62  Identities=5%  Similarity=-0.056  Sum_probs=45.8

Q ss_pred             c-CCCEEEEEcCC-------hHHHHHHHHHHhCCCCEEEecC-CCCCc--------------cc--cccCCCHHHHhhcC
Q 021388          142 F-TGKTVGIIGLG-------RIGMAVAKRAEAFSCPINYYSR-TEKPN--------------LK--YKYYPSVVELASNC  196 (313)
Q Consensus       142 l-~g~~igiiG~G-------~iG~~iA~~l~~~G~~V~~~~~-~~~~~--------------~~--~~~~~~l~e~~~~a  196 (313)
                      + .|++|+|+|.|       ++.++++..+..+|++|.+..| ..-..              .+  .....++++.++++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68899776533       7889999999999999999888 32110              01  12357889999999


Q ss_pred             CEEEEec
Q 021388          197 HILVVAC  203 (313)
Q Consensus       197 DvV~~~l  203 (313)
                      |+|..-.
T Consensus       246 Dvvy~~~  252 (335)
T PRK04523        246 DVVYAKS  252 (335)
T ss_pred             CEEEece
Confidence            9998754

>PRK08589 short chain dehydrogenase; Validated

Probab=91.12  E-value=0.45  Score=43.12  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            367899999987 789999999999999999999886

>PRK12367 short chain dehydrogenase; Provisional

Probab=91.07  E-value=0.39  Score=43.17  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c----cc-cC---CCHHHHhhcCCEEEEecC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K----YK-YY---PSVVELASNCHILVVACP  204 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~----~~-~~---~~l~e~~~~aDvV~~~lp  204 (313)
                      ..+.|+++.|.|. |.||+.+|+.+...|++|++.+|+.....     .    .. ..   .++++.+...|+++.+..
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            3578999999986 68999999999999999998887652110     0    00 11   233456678999988764

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.06  E-value=1  Score=40.51  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCC
Q 021388          141 KFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       141 ~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ++.||++.|.|.+   .||+++|+.+...|++|+..+++.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            4789999999986   799999999999999998887764

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.99  E-value=0.94  Score=40.75  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCcc-----c-cccCCCHH-HH--hhcCCEEEEecCCChhhhcc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNL-----K-YKYYPSVV-EL--ASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~-----~-~~~~~~l~-e~--~~~aDvV~~~lp~~~~t~~l  212 (313)
                      .|.++.|.|.|.+|..+++.++..|.+ |++.+++.++..     + ........ ..  -...|+++.++....    .
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~  172 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A  172 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence            568999999999999999999999999 888876543211     1 01000011 11  134788877665322    1


Q ss_pred             cCHHHHhccCCCcEEEEcCCCc
Q 021388          213 INREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~  234 (313)
                       -...+..++++..+++++-.+
T Consensus       173 -~~~~~~~l~~~g~~~~~g~~~  193 (277)
T cd08255         173 -LETALRLLRDRGRVVLVGWYG  193 (277)
T ss_pred             -HHHHHHHhcCCcEEEEEeccC
Confidence             255677889999999887543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06153 hypothetical protein; Provisional

Probab=90.98  E-value=0.26  Score=47.48  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=31.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSR  175 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~  175 (313)
                      .|++++|+|||+|.+|..++..|.+.|. ++..+|.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            5899999999999999999999999998 5777774

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=90.95  E-value=0.4  Score=45.79  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-----ccCCC---HHHHhh--cCCEEEEe
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-----KYYPS---VVELAS--NCHILVVA  202 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-----~~~~~---l~e~~~--~aDvV~~~  202 (313)
                      +|+|||-|..|..+++.++.+|++|+++|+++.....  +     ....+   +.++++  ++|+|+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~   69 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE   69 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence            5899999999999999999999999999987653221  0     01223   444555  68888653

This enzyme is an alternative to PurN (TIGR00639)

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.87  E-value=0.32  Score=43.62  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      .|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4889999999999999999999999998 57777743

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05717 oxidoreductase; Validated

Probab=90.85  E-value=0.61  Score=41.61  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|+..+++.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            588999999985 8999999999999999999988764

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.82  E-value=1  Score=41.58  Aligned_cols=85  Identities=15%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---CC--CH-HHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---YP--SV-VELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~--~l-~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .|.+|.|.|.|.+|+.+++.++..|++|++.+++.+...     +...   ..  +. .......|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            467899999999999999999999999998887654211     1110   00  11 111235788876654221    


Q ss_pred             ccCHHHHhccCCCcEEEEcCC
Q 021388          212 IINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~r  232 (313)
                       ...+.+..|+++..+++++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             12556778888888888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=90.74  E-value=0.91  Score=40.70  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +.++++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   40 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA   40 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            67899999986 68999999999999999999888653

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=90.49  E-value=0.35  Score=45.08  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             EEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecCC--Ch-h
Q 021388          149 IIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACPL--TE-E  208 (313)
Q Consensus       149 iiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp~--~~-~  208 (313)
                      |||.|.+|..+|-.|...+.  ++..+|+..+...+               .....+-.+.+++||+|+++.-.  .+ .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            68999999999999987676  58899987653221               01112334678999999997643  11 1


Q ss_pred             hhc-cc--C-------HHHHhccCCCcEEEEcC
Q 021388          209 TRH-II--N-------REVIDALGPKGVLINIG  231 (313)
Q Consensus       209 t~~-li--~-------~~~l~~mk~ga~lIn~~  231 (313)
                      ++. ++  |       ...+....|.+++++++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            111 11  1       12233356889999887

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.42  E-value=1.3  Score=39.83  Aligned_cols=36  Identities=17%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCC
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .+.||++.|.|.   +.||+++|+.|...|++|+..+|+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            478899999997   489999999999999999887764

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=90.35  E-value=1.3  Score=39.68  Aligned_cols=39  Identities=21%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .+.+|++.|.| .|.||+.+++.|...|++|...+++...
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD   45 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            47899999998 5899999999999999999998876543

>PRK05866 short chain dehydrogenase; Provisional

Probab=90.30  E-value=0.51  Score=43.49  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +..+.|+++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45688999999986 89999999999999999999998753

>PRK08862 short chain dehydrogenase; Provisional

Probab=90.25  E-value=0.56  Score=41.56  Aligned_cols=38  Identities=8%  Similarity=0.203  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++.|+++.|.|.+. ||+++|+.|...|++|...+|+.+
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46789999998776 999999999999999999988654

>PRK06128 oxidoreductase; Provisional

Probab=90.25  E-value=0.44  Score=43.91  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|.+..++
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            478999999985 889999999999999998876554

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=90.25  E-value=0.58  Score=43.78  Aligned_cols=62  Identities=24%  Similarity=0.207  Sum_probs=43.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCC--CCEEEecCCCCCc---------cccc-------cCCCHHHHhhcCCEEEEe
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFS--CPINYYSRTEKPN---------LKYK-------YYPSVVELASNCHILVVA  202 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G--~~V~~~~~~~~~~---------~~~~-------~~~~l~e~~~~aDvV~~~  202 (313)
                      +.|+++.|.|. |.||+.+++.|.+.|  .+|.+++++....         ....       ...++.++++..|+|+.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            46889999985 999999999998876  6899888754321         0111       112355677889998765


Q ss_pred             c
Q 021388          203 C  203 (313)
Q Consensus       203 l  203 (313)
                      .
T Consensus        82 A   82 (324)
T TIGR03589        82 A   82 (324)
T ss_pred             c
Confidence            4

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.20  E-value=0.7  Score=43.79  Aligned_cols=85  Identities=25%  Similarity=0.348  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------ccccc---CCC---HHHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKY---YPS---VVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|.++.|.|.|.+|..+++.++..|.+|++.+++.++.      .++..   ..+   +.+.....|+++-+++....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            57889999999999999999999999988777654321      22211   111   22233346888877653211  


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        + ...+..++++..++.+|.
T Consensus       258 --~-~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 --L-EPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             --H-HHHHHHhccCCEEEEECC
Confidence              1 345677888888888874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=90.19  E-value=0.77  Score=41.13  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +.|+++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAE   41 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            67899999986 67999999999999999999988653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.18  E-value=0.47  Score=41.87  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++.|+++.|+|. |.||+.+++.+...|++|++.+++..
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~   40 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999997 99999999999999999999988753

>PRK12828 short chain dehydrogenase; Provisional

Probab=90.11  E-value=0.51  Score=41.20  Aligned_cols=38  Identities=29%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            377899999975 99999999999999999999998654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.11  E-value=0.43  Score=43.84  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35899999999999999999999999995 67777743

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=90.09  E-value=0.48  Score=48.06  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .-.|++|.|||.|.+|...|..|+..|++|+++++.
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            357999999999999999999999999999999864

>PLN02206 UDP-glucuronate decarboxylase

Probab=90.08  E-value=0.88  Score=44.80  Aligned_cols=41  Identities=22%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             cccccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCC
Q 021388          136 YKLTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .++|..-.+++|.|.| .|-||+.+++.|...|.+|.++|+.
T Consensus       111 ~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~  152 (442)
T PLN02206        111 IPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF  152 (442)
T ss_pred             CccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence            3456667889999998 5999999999999999999998754

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.05  E-value=0.68  Score=41.98  Aligned_cols=35  Identities=14%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCC
Q 021388          142 FTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       142 l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      +.||++.|.|.|   .||+++|+.|...|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            678999999987   59999999999999999887765

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=90.05  E-value=1.4  Score=46.82  Aligned_cols=105  Identities=15%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             CEEEEEcCChHHHHH-HHHHHhCCCCEEEecCCCCCc------cccccC-CCHHHHhhcCCEEEEecCCChhhh------
Q 021388          145 KTVGIIGLGRIGMAV-AKRAEAFSCPINYYSRTEKPN------LKYKYY-PSVVELASNCHILVVACPLTEETR------  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~i-A~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~e~~~~aDvV~~~lp~~~~t~------  210 (313)
                      +++.|+|+|..|.+. |+.|+..|++|.++|......      .+.... ....+.+..+|+|+..-.-.+.+.      
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~   84 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK   84 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence            369999999999997 999999999999999754321      122111 112355678998876532222211      


Q ss_pred             ----cccCH-HHHhcc-CC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          211 ----HIINR-EVIDAL-GP-KGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       211 ----~li~~-~~l~~m-k~-ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                          .++.+ +++..+ +. ..+-|--+.|......-+...|++..
T Consensus        85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence                12333 233333 32 24556666799888888888888754

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.03  E-value=2.2  Score=40.36  Aligned_cols=110  Identities=18%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC---CCCEE-EecCCCCCcc---------ccccCCCHHHHhhcC--CEEEEecCCChhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF---SCPIN-YYSRTEKPNL---------KYKYYPSVVELASNC--HILVVACPLTEET  209 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~---G~~V~-~~~~~~~~~~---------~~~~~~~l~e~~~~a--DvV~~~lp~~~~t  209 (313)
                      -+.||+|+|.|++..++.+...   +++|. ++||+.+...         ....+.+.+|++++.  |+|.+..|...+-
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~   86 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY   86 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence            3689999999999999999743   57765 5677554221         123467899999876  9999998865442


Q ss_pred             hcccCHHHHhccCCCcEEEEcCC-CccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          210 RHIINREVIDALGPKGVLINIGR-GPHVDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~r-g~~vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                      + +.   .+...+...+|+.--- -++-+.+.+++|.+.+.+.  ..|-++.
T Consensus        87 e-vv---~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~--~meg~~~  132 (351)
T KOG2741|consen   87 E-VV---MLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVF--FMEGLWW  132 (351)
T ss_pred             H-HH---HHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcE--EEeeeee
Confidence            2 21   2222233345554432 2334556677777777765  5554433

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=90.00  E-value=0.56  Score=42.77  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=64.0

Q ss_pred             cccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecC-CCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          138 LTTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSR-TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~-~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+..+.||++.|+|-.. +|.++|..|..-|.+++=.+. +-...-.......++.-.+++|+++.++-    -.++|..
T Consensus       160 ~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g----~p~li~~  235 (309)
T KOG0089|consen  160 TGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVG----IPNLITS  235 (309)
T ss_pred             hCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcC----CCccccc
Confidence            35679999999999875 699999999998765542221 10000001112245667889999998875    3345544


Q ss_pred             HHHhccCCCcEEEEcCCCccccHH
Q 021388          216 EVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      +   ..|+|+.++|++--.+-|..
T Consensus       236 d---~Ik~Ga~vidvgin~v~dp~  256 (309)
T KOG0089|consen  236 D---MIKPGAAVIDVGINRVHDPS  256 (309)
T ss_pred             c---eeecCceeEecCCCcccccc
Confidence            3   35899999999988776654

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=89.95  E-value=1.4  Score=41.88  Aligned_cols=83  Identities=11%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCC---CEEEe--cCCCCCccccc----cCCCH-HHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSC---PINYY--SRTEKPNLKYK----YYPSV-VELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~---~V~~~--~~~~~~~~~~~----~~~~l-~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.++  .++..+.....    ...++ .+.+.++|+|++++|... +  
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s--   82 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-S--   82 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-H--
Confidence            346899997 58899999999988665   33333  23322221110    11111 234578999999998542 2  


Q ss_pred             ccCHHHHhc-cCCCcEEEEcC
Q 021388          212 IINREVIDA-LGPKGVLINIG  231 (313)
Q Consensus       212 li~~~~l~~-mk~ga~lIn~~  231 (313)
                         .++... .+.|+.+||.|
T Consensus        83 ---~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         83 ---KKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             ---HHHHHHHHhCCCEEEECC
Confidence               233332 25689999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-150
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-63
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-48
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-47
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		2e-41
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		1e-39
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-39
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-39
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		7e-38
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		1e-37
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		9e-37
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-31
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		1e-31
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-31
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		1e-31
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-31
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-31
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		3e-30
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		4e-30
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		1e-28
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-27
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-27
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-27
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		8e-27
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-24
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		4e-23
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		4e-23
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		5e-23
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		6e-23
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		9e-23
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		1e-22
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-22
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		8e-22
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		1e-21
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		1e-21
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-21
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		6e-21
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		8e-21
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		8e-21
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		8e-21
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		6e-20
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		5e-19
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		5e-19
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		1e-18
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		2e-18
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		2e-18
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		5e-17
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		1e-16
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		2e-16
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		2e-16
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		3e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		1e-13
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		2e-13
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-13
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		2e-10
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		2e-10
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		3e-09
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		1e-06
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		3e-05

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  526 bits (1355), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/313 (81%), Positives = 281/313 (89%)
Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPM+TYLEQEL++RF LF++WT   +  FL  Q  +IRAVVGN+ AGADAE
Sbjct: 21  MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80
Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVSSFSVGLDKVD++KC+EKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPI+Y+SR++KPN
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVACPLT ET HIINREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLV+GNLE
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320
Query: 301 AHFLNKPLLTPVV 313
           AHF  KPLLTPVV
Sbjct: 321 AHFSGKPLLTPVV 333

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           +L+  P   ++  EL+R +++ + +  +D+   L+A   +IRAV     AG   E  + L
Sbjct: 33  LLLVEPXXPFVXDELQRNYSVHRLYQAADRPA-LEAALPSIRAVATGGGAGLSNEWXEKL 91
Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           P L I++   VG DKVD+ + + + + VT TP VL DDVADL I L LAVLRR+ + DR 
Sbjct: 92  PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRL 151
Query: 126 VRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK 184
           VR G+W  G+   L     GK +G++GLG+IG A+A RAEAF   + Y++R+    + + 
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWI 211
Query: 185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSA 244
            + S V+LA +  +L V    +  T++I++  ++ ALGP+G+++N+ RG  VDE  L+ A
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 245 LVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303
           L  G + GAGLDVF NEP +  E     N VL PH GS TVETR     LVL NL AHF
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAAHF 330

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 9/274 (3%)
Query: 37  QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
           + L  +   + A+V   +   D E+ +  PKL IV++++VG D +D+ +  ++G+ VTNT
Sbjct: 37  EILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNT 96
Query: 97  PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------TGKTVGII 150
           PDVLTD  ADLA  L+LA  R + + DR+VRSG+WKK       K+       GKT+GII
Sbjct: 97  PDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII 156
Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
           GLGRIG A+AKRA+ F+  I YYSRT K  ++ +    +  + +L      +V+A PLT 
Sbjct: 157 GLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTR 216
Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
           ET H+IN E +  +    +LINI RG  VD   LV AL EG + GAGLDVFE EP+  EE
Sbjct: 217 ETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEE 276
Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
           LF L+NVVL PH+GS +   R+ MA+LV  NL A
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA 310

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/272 (45%), Positives = 168/272 (61%), Gaps = 9/272 (3%)
Query: 37  QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
           + L  +   + A+V   +   D E+ +  PKL IV++++VG D +D+ +  ++G+ VTNT
Sbjct: 37  EILLKKVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNT 96
Query: 97  PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------TGKTVGII 150
           PDVLTD  ADLA  L+LA  R + + DR+VRSG+WKK       K+       GKT+GII
Sbjct: 97  PDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII 156
Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
           GLGRIG A+AKRA+ F+  I YYSRT K  ++ +    +  + +L      +V+A PLT 
Sbjct: 157 GLGRIGQAIAKRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTR 216
Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
           ET H+IN E +       +LINI RG  VD   LV AL EG + GAGLDVFE EP+  EE
Sbjct: 217 ETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEE 276
Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
           LF L+NVVL PH+GS +   R+  A+LV  NL
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGXAELVAKNL 308

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 145/259 (55%), Gaps = 8/259 (3%)
Query: 58  DAELIDAL-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           D  ++DA    L+++S+ SVG+D + + + K++G+RV  TPDVLTD  A+LA+ L+L   
Sbjct: 66  DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 117 RRLCESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
           RRL E+   V++G W   K  +      T  TVGIIGLGRIG A+A+R + F      Y 
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 174 SRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
            R  +P    ++   + S  ELA+    +VVAC LT  T  + N++    +    V INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRK 289
            RG  V++ +L  AL  G++  AGLDV   EP      L  L+N V++PH+GS T  TR 
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 290 TMADLVLGNLEAHFLNKPL 308
           TM+ L   NL A    +P+
Sbjct: 306 TMSLLAANNLLAGLRGEPM 324

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 7/293 (2%)
Query: 16  LEQELERRFNL-FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL-PKLEIVSS 73
           +E EL +RF+L             + ++ +    +   AT    AE+I  L P L+ +++
Sbjct: 41  IEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIAT 100
Query: 74  FSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK 133
            SVG D +D    +  G++V +TPDVL+D  A++A  L+L   RR  E+DR VRSG W  
Sbjct: 101 LSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPG 160
Query: 134 -GDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYPS 188
            G  +L     TG+ +GI G GRIG A+A RA  F   I+Y++RT   +   +   Y+ +
Sbjct: 161 WGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDT 220
Query: 189 VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248
           +  L     I ++A P   E +  ++ + I  +    V+INI RG  +++  L+ AL   
Sbjct: 221 LDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSK 280
Query: 249 RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
            L  AGLDVF NEP +      L+N+ L PH+GS T ETR     L++  +EA
Sbjct: 281 HLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXGWLLIQGIEA 333

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 142/258 (55%), Gaps = 8/258 (3%)
Query: 58  DAELIDAL-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           D  ++DA    L+++S+ SVG+D + + + K++G+RV  TPDVLTD  A+LA+ L+L   
Sbjct: 64  DKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 123
Query: 117 RRLCESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
           RRL E+   V++G W   K  +      T  TVGIIGLGRIG A+A+R + F      Y 
Sbjct: 124 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 183
Query: 174 SRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
            R  +P    ++   + S  ELA+    +VVAC LT  T  + N++         V INI
Sbjct: 184 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINI 243
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRK 289
            RG  V++ +L  AL  G++  AGLDV   EP      L  L+N V++PH+GS T  TR 
Sbjct: 244 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 303
Query: 290 TMADLVLGNLEAHFLNKP 307
           T + L   NL A    +P
Sbjct: 304 TXSLLAANNLLAGLRGEP 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 136/241 (56%), Gaps = 8/241 (3%)
Query: 60  ELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           E+ID +P+ ++ +S++S+G D +D+  CK +G++V N P  +T   A++A+ L+L   RR
Sbjct: 59  EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 119 LCESDRYVRSGKWKKGD--YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
             E ++ +R+  W   +    +  K   KT+GI G G IG A+AKRA+ F   I+Y+   
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
             S +++ + +  ++ S+  L S      +  P T ETR+  N+  I +L    +++N  
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
           RG  VD   +V+AL  GRL  AG DVF  EP++ E  + L N  L PH+GS   + R+ M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 292 A 292
           A
Sbjct: 299 A 299

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 148/270 (54%), Gaps = 10/270 (3%)
Query: 39  LKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPD 98
           LK        ++ + T     E+++   +L+++S  S G D +D+ +  ++G+ VT    
Sbjct: 36  LKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG 95
Query: 99  VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG-----DYKLTTKFTGKTVGIIGLG 153
           +L++ VA+  +GL++ ++R++  +D+++R G+W+        +K      GK VGI+G+G
Sbjct: 96  LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG 155
Query: 154 RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETR 210
            IG A+A+R   F   + Y+SR  K N++ +    Y  + EL     I+++A PLT +T 
Sbjct: 156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTY 215
Query: 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG 270
           HIIN E +  L  K  L+NIGRG  VDE+ +  A+ +G+L G   DVFE EP    ELF 
Sbjct: 216 HIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274
Query: 271 LE-NVVLMPHVGSGTVETRKTMADLVLGNL 299
            E   VL PH     +E ++ +    + NL
Sbjct: 275 YEWETVLTPHYAGLALEAQEDVGFRAVENL 304

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 156/259 (60%), Gaps = 6/259 (2%)
Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DAE++D    L++++ +SVG+D VD+   +E+G+RVT+TP VLT+  ADL + L+LAV R
Sbjct: 56  DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 118 RLCESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
           R+ E   Y R G WK    +  L     G T+G++G+GRIG AVAKRA AF   + Y++R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 176 TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
           T KP L Y +  S+ EL     ++ +  PLT ET  ++NRE + A+    +L+N  RG  
Sbjct: 176 TPKP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL 233
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADL 294
           VD   LV AL  G L GAGLDV + EP  P   L+ L N V+ PH+GS    TR+ MA++
Sbjct: 234 VDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292
Query: 295 VLGNLEAHFLNKPLLTPVV 313
            + NL A    +    PVV
Sbjct: 293 AVENLLAVLEGREPPNPVV 311

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 8/294 (2%)
Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           M+ + VL+A P++    Q L+       +    D+ + ++  ++ + A++  +       
Sbjct: 1   MKRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKD-VEAIIVRSKPKVTRR 59
Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           +I++ PKL++++   VGLD +D+   KEKG+ V N P   +  VA+LA+GLM +V R++ 
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 119
Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI---NYYSRTE 177
            +DR +R G W K +  +  +  GKT+GIIG GRIG  VAK A A    I   + Y   E
Sbjct: 120 FADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEE 178
Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237
           +       +  +  L     ++ +  PL E T H+IN E +  +    +LIN  RGP VD
Sbjct: 179 RAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVD 238
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRK 289
              LV AL EG + GAGLDVFE EP +P++  L   +NVVL PH+G+ TVE ++
Sbjct: 239 TNALVKALKEGWIAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEAQE 291

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)
Query: 34  DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRV 93
           D+ + L A       +V +AT   DAE++ A PKL+IV+   VGLD VD+     +GV V
Sbjct: 34  DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV 92
Query: 94  TNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG 153
            N P       A+ A+ L+LA  R++  +D  +R   WK+  +  T  F GKTVG++GLG
Sbjct: 93  VNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF-GKTVGVVGLG 151
Query: 154 RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETR 210
           RIG  VA+R  AF   +  Y     P    +      S+ +L +    + V  P T ET 
Sbjct: 152 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETA 211
Query: 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG 270
            +I++E +    P  +++N  RG  VDE  L  A+  G +  AGLDVF  EP     LF 
Sbjct: 212 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFE 271
Query: 271 LENVVLMPHVGSGTVETR 288
           L  VV+ PH+G+ T E +
Sbjct: 272 LAQVVVTPHLGASTAEAQ 289

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)
Query: 34  DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRV 93
           D+ + L A       +V +AT   DAE++ A PKL+IV+   VGLD VD+     +GV V
Sbjct: 33  DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV 91
Query: 94  TNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG 153
            N P       A+ A+ L+LA  R++  +D  +R   WK+  +  T  F GKTVG++GLG
Sbjct: 92  VNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF-GKTVGVVGLG 150
Query: 154 RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETR 210
           RIG  VA+R  AF   +  Y     P    +      S+ +L +    + V  P T ET 
Sbjct: 151 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETA 210
Query: 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG 270
            +I++E +    P  +++N  RG  VDE  L  A+  G +  AGLDVF  EP     LF 
Sbjct: 211 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFE 270
Query: 271 LENVVLMPHVGSGTVETR 288
           L  VV+ PH+G+ T E +
Sbjct: 271 LAQVVVTPHLGASTAEAQ 288

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA+ + A P+L ++     G D  D+  C  +GV +T  PD+LT   A+LAIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR- 175
            L  +D +VRSG+++    +   T     TVG +G+G IG+A+A R + +   + Y++R 
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARK 177
Query: 176 ---TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
              T+          +  EL ++   +++A PL  +T H++N E++  + P  +L+N  R
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGSGT 284
           G  VDE  +++AL  G+LGG   DVFE E          +   L    N +  PH+GS  
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 285 VETR 288
              R
Sbjct: 298 RAVR 301

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA+ + A P+L ++     G D  D+  C  +GV +T  PD+LT   A+LAIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR- 175
            L  +D +VRSG+++    +   T     TVG +G+G IG+A+A R + +   + Y++R 
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARK 177
Query: 176 ---TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
              T+          +  EL ++   +++A PL  +T H++N E++  + P  +L+N  R
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGSGT 284
           G  VDE  +++AL  G+LGG   DVFE E          +   L    N +  PH+GS  
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 285 VETR 288
              R
Sbjct: 298 RAVR 301

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA+ + A P+L ++     G D  D+  C  +GV +T  PD+LT   A+LAIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
            L  +D +VRSGK++    +   T     TVG +G+G IG+A+A R + +   + Y+   
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 174 ---SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
              ++TE+  L  +   +  EL ++   +++A PL  +T H++N E++  + P  +L+N 
Sbjct: 178 ALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGS 282
            RG  VDE  +++AL  G+LGG   DVFE E          +   L    N +  PH+GS
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 283 GTVETR 288
                R
Sbjct: 296 AVRAVR 301

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA+ + A P+L ++     G D  D+  C  +GV +T  PD+LT   A+LAIGL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
            L  +D +VRSGK++    +   T     TVG +G+G IG+A+A R + +   + Y+   
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 174 ---SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
              ++TE+  L  +   +  EL ++   +++A PL  +T H++N E++  + P  +L+N 
Sbjct: 178 ALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGS 282
            RG  VDE  +++AL  G+LGG   DVFE E          +   L    N +  PH+GS
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 283 GTVETR 288
                R
Sbjct: 296 AVRAVR 301

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 17/246 (6%)
Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DA+ + A P+L ++     G D  D+  C  +GV +T  PD+LT   A+LAIGL + + R
Sbjct: 59  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
            L  +D +VRSG+++    +   T     TVG +G G IG+A A R + +   + Y+   
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAK 178
Query: 174 ---SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
              ++TE+  L  +   +  EL ++   +++A PL  +T H++N E++  + P  +L+N 
Sbjct: 179 ALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 236
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGS 282
            RG  VDE  +++AL  G+LGG   DVFE E          +   L    N +  PH+GS
Sbjct: 237 CRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGS 296
Query: 283 GTVETR 288
                R
Sbjct: 297 AVRAVR 302

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 6/254 (2%)
Query: 39  LKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPD 98
           L A+  +   ++  +     A++I+A  KL++V     G+D VD+     KG+ V NTP+
Sbjct: 61  LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN 120
Query: 99  VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMA 158
             +   A+L  G+++ + R++ ++   ++ GKW++  + + T+  GKT+GI+GLGRIG  
Sbjct: 121 GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGRE 179
Query: 159 VAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV---ELASNCHILVVACPLTEETRHIINR 215
           VA R ++F      Y     P +   +    +   E+   C  + V  PL   T  ++N 
Sbjct: 180 VATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLND 239
Query: 216 EVIDALGPKGV-LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274
               A   KGV ++N  RG  VDE  L+ AL  G+  GA LDVF  EP     L   ENV
Sbjct: 240 NTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENV 298
Query: 275 VLMPHVGSGTVETR 288
           +  PH+G+ T E +
Sbjct: 299 ISCPHLGASTKEAQ 312

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 11/238 (4%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E+  A  +L  V  FSVG ++V++   +++G+ V N P   T  VA+L IG ++ ++RR+
Sbjct: 73  EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI 132
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
                   +G W+K     + +  GKT+GI+G G IG  V   AE+    + YY  ++K 
Sbjct: 133 FPRSVSAHAGGWEKTAIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDK- 190
Query: 180 NLKY---KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
            L+Y   K   S+ EL     ++ +  P ++ T  +I    +  +     LIN  RG  V
Sbjct: 191 -LQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEELF-----GLENVVLMPHVGSGTVETRK 289
           D   L   L EG L GA +DVF  EP    E F     GLENV+L PH+G  T E ++
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQE 307

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 16/270 (5%)
Query: 58  DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           +A+LI  LP  L++ ++   G D +D+    E+GV   N+        +DLA+ L+L+V 
Sbjct: 70  NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 117 RRLCESDRYVRSGKWKKGDY------KLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCP 169
           R    S+R  R+G  +  +       K      G  +G +GLG I   +A++A       
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 170 INYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
           + YY      + TEK  L  +   S+ ELA     + V+ P  + T H+I+     A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
              ++N  RGP + +  L++AL  G+L  AGLDV E EP V +EL  +++V L  H+G  
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 284 TVETRKTMADLVLGNLEAHFLN-KPLLTPV 312
            +ET      L + N++   L  KPLLTP 
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 135/270 (50%), Gaps = 16/270 (5%)
Query: 58  DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           +A+LI  LP  L++ ++   G D +D+    E+GV   N+        +DLA+ L+L+V 
Sbjct: 70  NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 117 RRLCESDRYVRSGKWKKGDY------KLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCP 169
           R    S+R  R+G  +  +       K      G  +G +GLG I   +A++A       
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 170 INYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
           + YY      + TEK  L  +   S+ ELA     + V+ P  + T H+I+     A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
              ++N  RGP + +  L++AL  G+L  AGLDV E EP+V +EL  +++V L  H+G  
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGV 308
Query: 284 TVETRKTMADLVLGNLEAHFLN-KPLLTPV 312
            +ET      L + N++   L  KPLLTP 
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 16/270 (5%)
Query: 58  DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           +A++I  LP  L++ ++   G D +D+    E+GV   N+        +DLA+ L+L+V 
Sbjct: 70  NADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 117 RRLCESDRYVRSGKWKKGDY------KLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCP 169
           R    S+R  R+G  +  +       K      G  +G +GLG I   +A++A       
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 170 INYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
           + YY      + TEK  L  +   S+ ELA     + V+ P  + T H+I+     A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
              ++N  RGP + +  L++AL  G+L  AGLDV E EP V +EL  +++V L  H+G  
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 284 TVETRKTMADLVLGNLEAHFLN-KPLLTPV 312
            +ET      L + N++   L  KPLLTP 
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 130/268 (48%), Gaps = 28/268 (10%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           EL+   P+L+++ + SVG D +D+  CK+KG+ VT+ P    + VA+     +L +++RL
Sbjct: 57  ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
              +  V+   + +    L  +    T+G+IG GRIG  VA    AF   +  Y   ++ 
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 180 NLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV-LINIGRGPHV 236
           +LK K   Y S+ EL     ++ +  P T+ET H IN E I +L   GV LIN  RG  V
Sbjct: 177 DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERI-SLXKDGVYLINTARGKVV 235
Query: 237 DERELVSALVEGRLGGAGLDVFENE-----PHVPE-----------ELFGLENVVLMPHV 280
           D   L  A   G+  G GLDVFE+E         E           EL   +NV++ PH+
Sbjct: 236 DTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHI 295
Query: 281 GSGT--------VETRKTMADLVLGNLE 300
              T         ET K +   V G+LE
Sbjct: 296 AYYTDKSLERIREETVKVVKAFVKGDLE 323

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 15/249 (6%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ++I+   KL+I++   +GLD +D  + +++ ++V   P   TD   +L IGLM+A  R++
Sbjct: 61  DVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS----- 174
             S    +SG +KK +     +  GKT+GI+G GRIG  V   A A    +  Y      
Sbjct: 121 YTSMALAKSGIFKKIE---GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177
Query: 175 -RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
            + EK N K     S+ EL  N  ++ +   ++++ + II+    + +    +++N  R 
Sbjct: 178 EKAEKINAK---AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPE---ELFGLENVVLMPHVGSGTVETRKT 290
             V+ + L+  + +G++     DVF NEP   E   EL   E V++  H+G+ T E +K 
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 291 MADLVLGNL 299
           +A++   NL
Sbjct: 295 VAEMTTQNL 303

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ++I+A  KL  + +F++G ++VD+    ++G+ V N P   T  VA+L IG +L +LR +
Sbjct: 68  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
            E++     G W K   G ++      GK +GIIG G IG  +   AE+    + +Y   
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
            K P         + +L +   ++ +  P    T++++  + I  + P  +LIN  RG  
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
           VD   L  AL    L GA +DVF  EP    + F       +NV+L PH+G  T E ++ 
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
           +   V G L  +  N   L+ V
Sbjct: 304 IGLEVAGKLIKYSDNGSTLSAV 325

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ++I+A  KL  + +F++G ++VD+    ++G+ V N P   T  VA+L IG +L +LR +
Sbjct: 68  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
            E++     G W K   G ++      GK +GIIG G IG  +   AE+    + +Y   
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
            K P         + +L +   ++ +  P    T++++  + I  + P  +LIN  RG  
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
           VD   L  AL    L GA +DVF  EP    + F       +NV+L PH+G  T E ++ 
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
           +   V G L  +  N   L+ V
Sbjct: 304 IGLEVAGKLIKYSDNGSTLSAV 325

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E ++    L I+     G D +D+    + G+ V N P    ++ AD  +  +L + RR 
Sbjct: 78  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
               + +R G   +   ++        +  G+T+GIIGLGR+G AVA RA+AF   + +Y
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
               S   +  L  +   ++ +L  +   + + C L E   H+IN   +  +     L+N
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
             RG  VDE+ L  AL EGR+ GA LDV E+EP    +  L    N++  PH        
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 284 TVETRKTMA 292
           ++E R+  A
Sbjct: 318 SIEMREEAA 326

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 22/250 (8%)
Query: 75  SVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG 134
           +VG D +DM   K+ G+R++N P      +A+ A+   L +LR + +    +++G ++K 
Sbjct: 76  NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA 135
Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS----RTEKPNLKYKYYPSVV 190
              +  +   +TVG++G G IG    K  + F   +  Y     + + P+  Y    S+ 
Sbjct: 136 GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV---SLE 192
Query: 191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL 250
           +L     ++ +  P  E+  HIIN    + + P  ++IN  R   +D + ++S L  G+L
Sbjct: 193 DLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252
Query: 251 GGAGLDVFENEPH--------------VPEELFGLENVVLMPHVGSGTVETRKTMADLVL 296
            G G+D +E E                + +EL G+ NVVL PH+   T      M    L
Sbjct: 253 AGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSL 312
Query: 297 GNLEAHFLNK 306
            +L   FL K
Sbjct: 313 QHL-VDFLTK 321

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E ++    L I+     G D +D+    + G+ V N P    ++ AD  +  +L + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
               + +R G   +   ++        +  G+T+GIIGLGR+G AVA RA+AF   + +Y
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
               S   +  L  +   ++ +L  +   + + C L E   H+IN   +  +     L+N
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
             RG  VDE+ L  AL EGR+ GA LDV E+EP    +  L    N++  PH        
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 320
Query: 284 TVETRKTMA 292
           ++E R+  A
Sbjct: 321 SIEMREEAA 329

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E ++    L I+     G D +D+    + G+ V N P    ++ AD  +  +L + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
               + +R G   +   ++        +  G+T+GIIGLGR+G AVA RA+AF   + +Y
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
               S   +  L  +   ++ +L  +   + + C L E   H+IN   +  +     L+N
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
             RG  VDE+ L  AL EGR+ GA LDV E+EP    +  L    N++  PH        
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 320
Query: 284 TVETRKTMA 292
           ++E R+  A
Sbjct: 321 SIEMREEAA 329

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 125/262 (47%), Gaps = 13/262 (4%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ++I+A  KL  +  F +G ++VD+    ++G+ V N P   T  VA+L IG +L +LR +
Sbjct: 67  DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 126
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
            E++     G W K   G ++      GK +GIIG G IG  +   AE+    + +Y   
Sbjct: 127 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 182
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
            K P         + +L +   ++ +  P    T++++  + I  + P  +LIN  RG  
Sbjct: 183 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 242
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
           VD   L  AL    L GA +DVF  EP    + F       +NV+L PH+G  T E ++ 
Sbjct: 243 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 302
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
           +   V G L  +  N   L+ V
Sbjct: 303 IGLEVAGKLIKYSDNGSTLSAV 324

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E ++    L I+     G D +D+    + G+ V N P    ++ AD  +  +L + RR 
Sbjct: 81  EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
               + +R G   +   ++        +  G+T+GIIGL R+G AVA RA+AF   + +Y
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFY 200
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
               S   +  L  +   ++ +L  +   + + C L E   H+IN   +  +     L+N
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
             RG  VDE+ L  AL EGR+ GA LDV E+EP    +  L    N++  PH        
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 320
Query: 284 TVETRKTMA 292
           ++E R+  A
Sbjct: 321 SIEMREEAA 329

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 16/249 (6%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E ++    L ++     G D VD+    E G+ V N P    ++ AD  I  +L + RR 
Sbjct: 62  EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
               + +R G   +   ++        +  G+T+G+IG GR G AVA RA+AF   + +Y
Sbjct: 122 TWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY 181
Query: 174 SRTEKP----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
               +     +L  +   ++ +L      + + C L E   H+IN   I  +     L+N
Sbjct: 182 DPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVN 241
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
             RG  VDE+ L  AL EGR+ GA LDV E+EP    +  L    N++  PH        
Sbjct: 242 AARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQA 301
Query: 284 TVETRKTMA 292
           ++E R+  A
Sbjct: 302 SLEMREAAA 310

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 13/262 (4%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ++I+A  KL  +  F +G ++VD+    ++G+ V N P   T  VA+L IG +L +LR +
Sbjct: 68  DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
            E++     G W K   G ++      GK +GIIG G IG  +   AE+    + +Y   
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 183
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
            K P         + +L +   ++ +  P    T++    + I    P  +LIN  RG  
Sbjct: 184 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 243
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
           VD   L  AL    L GA +DVF  EP    + F       +NV+L PH+G  T E ++ 
Sbjct: 244 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 303
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
           +   V G L  +  N   L+ V
Sbjct: 304 IGLEVAGKLIKYSDNGSTLSAV 325

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 14/290 (4%)
Query: 18  QELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVSSFS 75
           ++L++    +  WT  D      A  + I  + GN       + I A P  +L+ V   S
Sbjct: 13  EQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPL---LKTILARPTNQLKFVQVIS 69
Query: 76  VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK-WKKG 134
            G+D + +   +  GV V NT  +  D +++  +  ML+V+R    +    R  + W   
Sbjct: 70  AGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALP 129
Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYPSVVE 191
               T+  TG+ + I G G+IG ++A +A A    +   + T  P   +     + +  +
Sbjct: 130 --MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATAD 187
Query: 192 LASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251
             +  + +V A PLT  T H+ + E+      + +LINIGRGP VD   L++AL   +L 
Sbjct: 188 ALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS 247
Query: 252 GAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
            A LDV E EP +P +  L+  ++V++ PH+       R T+  +   N 
Sbjct: 248 MAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 60  ELIDALPKLEIVSSFS-VGLD---KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAV 115
           +L+D LPKL+I+S    V  D    +D+  C +KGV V           A+L   L++A 
Sbjct: 64  QLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP-AELTWALVMAA 122
Query: 116 LRRLCESDRYVRSGKWKKGDYKLTTK---------FTGKTVGIIGLGRIGMAVAKRAEAF 166
            RR+ +    ++ G W++   K TT            G+T+GI G G+IG  VA    AF
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 167 SCPINYYSRTEKPNLKYKYYPSVVE----LASNCHILVVACPLTEETRHIINREVIDALG 222
              +  + R            +V E    L     +L V   L +ETR II    +  + 
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVG 281
           P  + +N  R   V+E  +V+AL  GR G A +DVFE EP +    L  +EN +  PH+G
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 7/257 (2%)
Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I   PKL++  +  +G D VD+    +  + V       ++ VA+  + ++L ++R 
Sbjct: 106 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 165
Query: 119 LCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
              S  + R+G W   D    +    G  VG +  GRIG+ V +    F   ++Y  R  
Sbjct: 166 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 225
Query: 178 KPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
            P      L   ++ +  ++   C ++ + CPL  ET H+IN E +        L+N  R
Sbjct: 226 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 285
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTM 291
           G   D   +V AL  GRL G   DV+  +P   +  +  + +  + PH+   ++  +   
Sbjct: 286 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTSLSAQTRY 345
Query: 292 ADLVLGNLEAHFLNKPL 308
           A      LE +F  +P+
Sbjct: 346 AAGTREILECYFEGRPI 362

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 13/262 (4%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           ++I+A  KL  + +F++G ++VD+    ++G+ V N P   T  VA+L IG +L +LR +
Sbjct: 62  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 120 CESDRYVRSG---KWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
            E++     G   K   G ++      GK +GIIG G IG  +   AE+    + +Y   
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 177
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
            K P         + +L +   ++ +  P    T++    + I    P  +LIN  RG  
Sbjct: 178 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 237
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
           VD   L  AL    L GA +DVF  EP    + F       +NV+L PH+G  T E ++ 
Sbjct: 238 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 297
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
           +   V G L  +  N   L+ V
Sbjct: 298 IGLEVAGKLIKYSDNGSTLSAV 319

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 7/257 (2%)
Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I   PKL++  +  +G D VD+    +  + V       ++ VA+  + ++L ++R 
Sbjct: 105 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 164
Query: 119 LCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
              S  + R+G W   D    +    G  VG +  GRIG+ V +    F   ++Y  R  
Sbjct: 165 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 224
Query: 178 KPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
            P      L   ++ +  ++   C ++ + CPL  ET H+IN E +        L+N  R
Sbjct: 225 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 284
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTM 291
           G   D   +V AL  GRL G   DV+  +P   +  +  + +  + PH+   ++  +   
Sbjct: 285 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTSLSAQTRY 344
Query: 292 ADLVLGNLEAHFLNKPL 308
           A      LE +F  +P+
Sbjct: 345 AAGTREILECYFEGRPI 361

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 10/218 (4%)
Query: 67  KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV 126
           KL    S   G+D +   +C+ +  ++TN   +    +++   G +L+++R+L       
Sbjct: 67  KLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ 125
Query: 127 RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT--EKPNLKYK 184
           +   W+   Y+      G+T+ I+G G IG  +A   + F   +   SR+  E+      
Sbjct: 126 KQRLWQSHPYQ---GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQV 182
Query: 185 YY-PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVS 243
           Y  P++ ++ +   ++V   P T ET H+      +   P  +L N+GRG  ++E +L++
Sbjct: 183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLT 242
Query: 244 ALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPH 279
           AL  G+LG A LDVFE EP +P +  L+G  N+++ PH
Sbjct: 243 ALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPH 279

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 9/253 (3%)
Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I     L+++ +  +G D +D+      G+ V          VA+  +  +L ++R 
Sbjct: 78  AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 137
Query: 119 LCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
                  V  G+W   G         GKT+G +G GRIG  + +R + F C + Y+ R +
Sbjct: 138 FVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ 197
Query: 178 -KPNLK----YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIG 231
             P L+     K+   + E+   C ++V+  PLTE+TR + N+E+I  L  KGVLI N  
Sbjct: 198 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNA 256
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-LENVVLMPHVGSGTVETRKT 290
           RG  ++ + +V A+  G +GG   DV++ +P   +  +  + N  + PH    T++ +  
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316
Query: 291 MADLVLGNLEAHF 303
            A      LE +F
Sbjct: 317 YAAGTKDMLERYF 329

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 9/253 (3%)
Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE I     L+++ +  +G D +D+      G+ V          VA+  +  +L ++R 
Sbjct: 84  AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 143
Query: 119 LCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
                  V  G+W   G         GKT+G +G GRIG  + +R + F C + Y+ R +
Sbjct: 144 FVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ 203
Query: 178 -KPNLK----YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIG 231
             P L+     K+   + E+   C ++V+  PLTE+TR + N+E+I  L  KGVLI N  
Sbjct: 204 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNA 262
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-LENVVLMPHVGSGTVETRKT 290
           RG  ++ + +V A+  G +GG   DV++ +P   +  +  + N  + PH    T++ +  
Sbjct: 263 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 322
Query: 291 MADLVLGNLEAHF 303
            A      LE +F
Sbjct: 323 YAAGTKDMLERYF 335

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 7/256 (2%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E I     L++  +  +G D VD+    ++ V V       +  VA+  + ++L+++R  
Sbjct: 106 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 165
Query: 120 CESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
             S  + R G W   D            VG +  GRIG+AV +R   F   ++Y  R   
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 225
Query: 179 PN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
           P      L   ++ +  ++   C ++ + CPL  ET H+IN E +        ++N  RG
Sbjct: 226 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 285
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTMA 292
              D   +  AL  GRL G   DV+  +P   +  +  +    + PH+   T+  +   A
Sbjct: 286 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYA 345
Query: 293 DLVLGNLEAHFLNKPL 308
                 LE  F  +P+
Sbjct: 346 AGTREILECFFEGRPI 361

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 7/256 (2%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E I     L++  +  +G D VD+    ++ V V       +  VA+  + ++L+++R  
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 120 CESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
             S  + R G W   D            VG +  GRIG+AV +R   F   ++Y  R   
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 179 PN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
           P      L   ++ +  ++   C ++ + CPL  ET H+IN E +        ++N  RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTMA 292
              D   +  AL  GRL G   DV+  +P   +  +  +    + PH+   T+  +   A
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYA 346
Query: 293 DLVLGNLEAHFLNKPL 308
                 LE  F  +P+
Sbjct: 347 AGTREILECFFEGRPI 362

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 7/256 (2%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           E I     L++  +  +G D VD+    ++ V V       +  VA+  + ++L+++R  
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 120 CESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
             S  + R G W   D            VG +  GRIG+AV +R   F   ++Y  R   
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 179 PN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
           P      L   ++ +  ++   C ++ + CPL  ET H+IN E +        ++N  RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTMA 292
              D   +  AL  GRL G   DV+  +P   +  +  +    + PH+   T+  +   A
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYA 346
Query: 293 DLVLGNLEAHFLNKPL 308
                 LE  F  +P+
Sbjct: 347 AGTREILEXFFEGRPI 362

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 23/253 (9%)
Query: 59  AELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           AE + AL    I  +S  +VG+D +DM K KE G ++TN P    + +A+ A      +L
Sbjct: 60  AETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARIL 119
Query: 117 RRLCESDRYV--RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
           R+    D  V     +W      +  +   + VG++G G IG    +  E F   +  Y 
Sbjct: 120 RQDKAMDEKVARHDLRWAP---TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD 176
Query: 175 RTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
               P L+ K  Y  S+ +L     ++ +  P      H+IN E I  +    V++N+ R
Sbjct: 177 IFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--------------LFGLENVVLMP 278
           GP VD   ++  L  G++ G  +DV+E E  +  E              L    NV++ P
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 279 HVGSGTVETRKTM 291
           H    T    + M
Sbjct: 297 HTAFYTTHAVRNM 309

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
           + A+  +L   RR  +         WK        +F+   VGI G G +G  VA+  +A
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFS---VGIXGAGVLGAKVAESLQA 160
Query: 166 FSCPINYYSRTEKPNLKYKYYPSVVELAS---NCHILVVACPLTEETRHIINREVIDALG 222
           +  P+  +SR+ K     + Y    EL +      +L+   P T +T  IIN E++D L 
Sbjct: 161 WGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLP 220
Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHV 280
               ++N+ RG HV E +L++AL  G+L GA LDVF  EP +P+E  L+    V   PH+
Sbjct: 221 DGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPHI 279
Query: 281 GSGT 284
            + T
Sbjct: 280 AAVT 283

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 9/209 (4%)
Query: 59  AELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
           AE + AL    I  +S  +VG+D +DM K KE G ++TN P    + +A+ A      +L
Sbjct: 60  AETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARIL 119
Query: 117 RRLCESDRYV--RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
           R+    D  V     +W      +  +   + VG++G G IG    +  E F   +  Y 
Sbjct: 120 RQDKAMDEKVARHDLRWAP---TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD 176
Query: 175 RTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
               P L+ K  Y  S+ +L     ++ +  P      H+IN E I  +    V++N+ R
Sbjct: 177 IFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE 261
           GP VD   ++  L  G++ G  +DV+E E
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 18/271 (6%)
Query: 48  AVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
           AV+      A+ + +D   KL +  + + + G D +D    KE G  +   P    + +A
Sbjct: 48  AVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
           +LA+   + +LR    +        +K   +  + +    TVG++GLGRIG   A+    
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 166 FSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
               +      E   ++ Y    S+ E+     I+ +  P  +E   ++ R+ +  +   
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDG 227
Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV-PEELFG--LEN-------- 273
            +L+N  RG  VD   ++ A+  G+LGG G DV + E  V  ++L G  LEN        
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287
Query: 274 ----VVLMPHVGSGTVETRKTMADLVLGNLE 300
               V++ PH+GS T E  K M ++   NL+
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEVSYQNLK 318

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 75  SVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV--RSGKWK 132
           +VG+D +DM K KE G ++TN P    + +A+ A      VLR+    D  +  R  +W 
Sbjct: 78  NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWA 137
Query: 133 KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK--YYPSVV 190
                +  +   + VG++G G IG    +  E F   +  Y   + P L+ K  Y  S+ 
Sbjct: 138 P---TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSLD 194
Query: 191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL 250
           +L     ++ +  P      H+IN + I  +    V++N  RG  VD   ++  L  G++
Sbjct: 195 DLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKI 254
Query: 251 GGAGLDVFENEPHV----------PE----ELFGLENVVLMPHVGSGTVETRKTM 291
            G  +D +E+E  V          P+    +L    NV++ PH    T    + M
Sbjct: 255 FGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNM 309

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 16/237 (6%)
Query: 76  VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCE-SDRYVRSGKWKKG 134
           VG + ++    K+  + VTN P      +A++ +   + +LR++ E   R      +   
Sbjct: 79  VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELA 193
              ++ +    TVG+IG+G IG AVA+   A    +  Y     P  + +  Y     + 
Sbjct: 139 SNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVL 198
Query: 194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA 253
               I+ +  PL   T ++I  + +  +     LIN  RG  VD   L+ AL +G + GA
Sbjct: 199 KEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGA 258
Query: 254 GLDVFENE-----------PHVPEE---LFGLENVVLMPHVGSGTVETRKTMADLVL 296
           GLD    E             +PE+   L  + NVV+ PH    T  + + M  + L
Sbjct: 259 GLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICL 315

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 21/265 (7%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT----NTPDVLTDDVADLAIGLMLAV 115
           E ID   KL++V    VG D +D+    + G +++       +V++  VA+  +  ML +
Sbjct: 77  ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 134
Query: 116 LRRLCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
           +R    +   + +  W+     K      GKT+  IG GRIG  V +R   F+   + YY
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 174 SRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
                P      +  +   ++ EL +   I+ V  PL   T+ +IN+E++        L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEP----HVPEEL---FGLENVVLMPHVG 281
           N  RG      ++ +AL  G+L G G DV+  +P    H   ++   +G  N  + PH  
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 313
Query: 282 SGTVETRKTMADLVLGNLEAHFLNK 306
             T++ +   A   +  LE+ F  K
Sbjct: 314 GTTLDAQTRYAQGTVNILESFFTGK 338

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 21/265 (7%)
Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT----NTPDVLTDDVADLAIGLMLAV 115
           E ID   KL++V    VG D +D+    + G +++       +V++  VA+  +  ML +
Sbjct: 78  ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 135
Query: 116 LRRLCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
           +R    +   + +  W+     K      GKT+  IG GRIG  V +R   F+   + YY
Sbjct: 136 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 195
Query: 174 SRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
                P      +  +   ++ EL +   I+ V  PL   T+ +IN+E++        L+
Sbjct: 196 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 255
Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEP----HVPEEL---FGLENVVLMPHVG 281
           N  RG      ++ +AL  G+L G G DV+  +P    H   ++   +G  N  + PH  
Sbjct: 256 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 314
Query: 282 SGTVETRKTMADLVLGNLEAHFLNK 306
             T++ +   A      LE+ F  K
Sbjct: 315 GTTLDAQTRYAQGTKNILESFFTGK 339

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 12/230 (5%)
Query: 59  AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
           AE +   P+L+ +   + GLD +         V V        D VA+ A+ L+LA  +R
Sbjct: 42  AEELAKXPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKR 100
Query: 119 LCESDRYVRSGKWKKGDYKLTTKF---TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
           + +        K K+GDY    +     G+ V ++GLG IG  V K   A    +  +SR
Sbjct: 101 IIQYGE-----KXKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR 155
Query: 176 TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
           T K    +++  S+ E        V A PL + TR ++  + +       V +N+GR   
Sbjct: 156 TPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEV 214
Query: 236 VDERELVSALVEGRLGGAGLDVF--ENEPHVPEELFGLENVVLMPHVGSG 283
           +D   ++  L E        DV+   N+     E F L NVV  P V  G
Sbjct: 215 LDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG 264

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 67  KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV 126
           + + + + S G+D +D+    E  V  +N     +  VA+ A  L+LA  + + E++   
Sbjct: 49  RTKXIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELX 107
Query: 127 RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYY 186
           ++G +++     TT   GK +GI+G G IG  VA  A+AF   +  Y+R+          
Sbjct: 108 KAGIFRQSP---TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDVIS 164
Query: 187 PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246
            S  +L      +++A PLT++TR  +N  ++        ++N+ R   V + + +  L 
Sbjct: 165 ESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLK 224
Query: 247 EGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
           E        DV+ NEP + E    L N +L PHV  G
Sbjct: 225 ERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGG 259

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 42/250 (16%)
Query: 44  NNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDD 103
           N+  A+   +    +  L+   P +  V + + G D VD    K+ G+  +  P      
Sbjct: 39  NHADALXVRSVTKVNESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA 97
Query: 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163
           V +     +L     L E D +                   +T+GI+G+G +G  +  R 
Sbjct: 98  VVEYVFSALLX----LAERDGF---------------SLRDRTIGIVGVGNVGSRLQTRL 138
Query: 164 EAFS-----CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIIN 214
           EA       C     +R ++ + +     ++ EL     +L    PL ++    T H+ +
Sbjct: 139 EALGIRTLLCDPPRAARGDEGDFR-----TLDELVQEADVLTFHTPLYKDGPYKTLHLAD 193
Query: 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274
             +I  L P  +LIN  RGP VD   L++ L  G+     LDV+E EP +        NV
Sbjct: 194 ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDL--------NV 245
Query: 275 VLMPHVGSGT 284
            L+  V  GT
Sbjct: 246 ALLEAVDIGT 255

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 88  EKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK--WKKGDYKLTTKFTGK 145
           ++G+ V  T  V  + VA++ +G  LA+ R + ++D   + G   W            G 
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGS 177
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYY------SRTEKPNLKYKYYPSVVE--LASNCH 197
            +GI+G G +G A+ +    F   I  +      S  E+  ++    P+ +E  L  +  
Sbjct: 178 EIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVE----PASLEDVLTKSDF 233
Query: 198 ILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257
           I VVA  +T E +  +  E   +       I + R   VD   L +A+  G +  A  DV
Sbjct: 234 IFVVAA-VTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DV 291
Query: 258 FENEP 262
           +  EP
Sbjct: 292 YPEEP 296

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 39/265 (14%)
Query: 41  AQQNNIRAVVGNATAGADAELIDAL---------------PKLEIVSSFSVGLDKVDMVK 85
           A Q +IR + G A   A    +D L                 +  V + ++G D +D+  
Sbjct: 17  ADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDY 76
Query: 86  CKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGK 145
             E G+  ++ P      V D  +G +LA+          VR     +  Y +       
Sbjct: 77  FAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE--------VRGADLAERTYGVVGAGQVG 128
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPL 205
              +  L  +G  V        C     +R  +P+ ++    S+  L +   ++ +  PL
Sbjct: 129 GRLVEVLRGLGWKV------LVCDPPRQAR--EPDGEFV---SLERLLAEADVISLHTPL 177
Query: 206 TEE----TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE 261
             +    TRH+++   + AL P   L+N  RG  VD + L   L  G      LDV+E E
Sbjct: 178 NRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237
Query: 262 PHVPEELFGLENVVLMPHVGSGTVE 286
           P    EL     ++  PH+   ++E
Sbjct: 238 PQADPEL-AARCLIATPHIAGYSLE 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-173
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-164
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-134
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-123
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-117
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-115
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-115
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-112
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	1e-111
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-106
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	6e-97
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	7e-93
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-89
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	5e-86
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-81
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	5e-81
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-78
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	9e-74
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-73
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-72
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	2e-71
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-71
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-71
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	8e-70
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	7e-69
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	4e-65
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-63
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-63
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	7e-61
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	1e-53
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	7e-52
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  480 bits (1239), Expect = e-173
 Identities = 255/313 (81%), Positives = 281/313 (89%)

Query: 1   MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
           ME+IGVLM CPM+TYLEQEL++RF LF++WT   +  FL  Q  +IRAVVGN+ AGADAE
Sbjct: 21  MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80

Query: 61  LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
           LIDALPKLEIVSSFSVGLDKVD++KC+EKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140

Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPI+Y+SR++KPN
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200

Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
             Y YY SVVELASN  ILVVACPLT ET HIINREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260

Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLV+GNLE
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320

Query: 301 AHFLNKPLLTPVV 313
           AHF  KPLLTPVV
Sbjct: 321 AHFSGKPLLTPVV 333

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  460 bits (1186), Expect = e-164
 Identities = 127/308 (41%), Positives = 183/308 (59%), Gaps = 2/308 (0%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           +L+  PM  ++  EL+R +++ + +  +D+     A  + IRAV     AG   E ++ L
Sbjct: 33  LLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPS-IRAVATGGGAGLSNEWMEKL 91

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           P L I++   VG DKVD+ + + + + VT TP VL DDVADL I LMLAVLRR+ + DR 
Sbjct: 92  PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL 151

Query: 126 VRSGKWKK-GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK 184
           VR G+W       L     GK +G++GLG+IG A+A RAEAF   + Y++R+    + + 
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWI 211

Query: 185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSA 244
            + S V+LA +  +L V    +  T++I++  ++ ALGP+G+++N+ RG  VDE  L+ A
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271

Query: 245 LVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFL 304
           L  G + GAGLDVF NEP +  E     N VLMPH GS TVETR  M  LVL NL AHF 
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFA 331

Query: 305 NKPLLTPV 312
            +     V
Sbjct: 332 GEKAPNTV 339

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  383 bits (987), Expect = e-134
 Identities = 102/314 (32%), Positives = 159/314 (50%), Gaps = 7/314 (2%)

Query: 6   VLMACPMNTYLEQELERRFNLFKF-WTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDA 64
             +       +E EL +RF+L             + ++ +    +   AT    AE+I  
Sbjct: 31  AFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRK 90

Query: 65  L-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESD 123
           L P L+ +++ SVG D +DM   +  G++V +TPDVL+D  A++A+ L+L   RR  E+D
Sbjct: 91  LQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEAD 150

Query: 124 RYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL 181
           R VRSG W        L    TG+ +GI G+GRIG A+A RA  F   I+Y++RT   + 
Sbjct: 151 RMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHA 210

Query: 182 K---YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE 238
                 Y+ ++  L     I ++A P   E +  ++ + I  +    V+INI RG  +++
Sbjct: 211 LEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND 270

Query: 239 RELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGN 298
             L+ AL    L  AGLDVF NEP +      L+N+ L PH+GS T ETR  M  L++  
Sbjct: 271 DALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQG 330

Query: 299 LEAHFLNKPLLTPV 312
           +EA   +      +
Sbjct: 331 IEALNQSDVPDNLI 344

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  356 bits (917), Expect = e-123
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 25/321 (7%)

Query: 16  LEQELERRFNLFKFWTVSDKTQFLKAQQNN--------IRAVVGNATAGA--DAELIDAL 65
           L  + +++F +     ++    F +A +          I+  V N T     +A+LI  L
Sbjct: 19  LWSDFQQKFEV-IPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL 77

Query: 66  PK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR 124
           P  L++ ++   G D +D+    E+GV   N+        +DLA+ L+L+V R    S+R
Sbjct: 78  PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSER 137

Query: 125 YVRSGKWKKG------DYKLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCPINYYSRTE 177
             R+G  +          K      G  +G +GLG I   +A++A       + YY    
Sbjct: 138 AARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP 197

Query: 178 KP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
                   L  +   S+ ELA     + V+ P  + T H+I+     A+ P   ++N  R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257

Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMA 292
           GP + +  L++AL  G+L  AGLDV E EP V +EL  +++V L  H+G   +ET     
Sbjct: 258 GPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFE 317

Query: 293 DLVLGNLEAHFLN-KPLLTPV 312
            L + N++   L  KPLLTP 
Sbjct: 318 RLTMTNIDRFLLQGKPLLTPA 338

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  340 bits (874), Expect = e-117
 Identities = 133/319 (41%), Positives = 185/319 (57%), Gaps = 14/319 (4%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFW---TVSDKTQFLKAQQNNIRAVVGNATAGADAELI 62
           V +   +     + LE  F + + W       +   LK  +  + A+V   +   D E+ 
Sbjct: 5   VFITREIPEVGIKMLEDEFEV-EVWGDEKEIPREILLKKVKE-VDALVTMLSERIDKEVF 62

Query: 63  DALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCES 122
           +  PKL IV++++VG D +D+ +  ++G+ VTNTPDVLTD  ADLA  L+LA  R + + 
Sbjct: 63  ENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKG 122

Query: 123 DRYVRSGKWKKGDYKLTTKF------TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
           DR+VRSG+WKK       K+       GKT+GIIGLGRIG A+AKRA+ F+  I YYSRT
Sbjct: 123 DRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRT 182

Query: 177 EKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
            K  ++ +    +  + +L      +V+A PLT ET H+IN E +  +    +LINI RG
Sbjct: 183 RKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARG 242

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293
             VD   LV AL EG + GAGLDVFE EP+  EELF L+NVVL PH+GS +   R+ MA+
Sbjct: 243 KVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAE 302

Query: 294 LVLGNLEAHFLNKPLLTPV 312
           LV  NL A    +   T V
Sbjct: 303 LVAKNLIAFKRGEIPPTLV 321

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  335 bits (861), Expect = e-115
 Identities = 87/318 (27%), Positives = 154/318 (48%), Gaps = 13/318 (4%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFW---TVSDKTQFLKAQQNNIRAVVGNATAGADAELI 62
           +L+  P+           +++             + ++  ++ + A++         E+I
Sbjct: 4   ILITWPLPEAAMARARESYDV-IAHGDDPKITIDEMIETAKS-VDALLITLNEKCRKEVI 61

Query: 63  DALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCE 121
           D +P+ ++ +S++S+G D +D+  CK +G++V N P  +T   A++A+ L+L   RR  E
Sbjct: 62  DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGE 121

Query: 122 SDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
            ++ +R+  W        +  K   KT+GI G G IG A+AKRA+ F   I+Y+      
Sbjct: 122 GEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS 181

Query: 180 N-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234
           +      +  ++ S+  L S      +  P T ETR+  N+  I +L    +++N  RG 
Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241

Query: 235 HVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADL 294
            VD   +V+AL  GRL  AG DVF  EP++ E  + L N  L PH+GS   + R+ MA  
Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQ 301

Query: 295 VLGNLEAHFLNKPLLTPV 312
               ++A F    +   +
Sbjct: 302 ANDLIDALFGGADMSYAL 319

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  332 bits (855), Expect = e-115
 Identities = 118/313 (37%), Positives = 170/313 (54%), Gaps = 9/313 (2%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFW--TVSDKTQFLKAQQNNIRAVVGNATAGADAELID 63
           VL+   +       L  R    +        K + LK  +     ++       DAE++D
Sbjct: 3   VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDAEVMD 61

Query: 64  ALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESD 123
               L++++ +SVG+D VD+   +E+G+RVT+TP VLT+  ADL + L+LAV RR+ E  
Sbjct: 62  RAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121

Query: 124 RYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL 181
            Y R G WK    +  L     G T+G++G+GRIG AVAKRA AF   + Y++RT KP L
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP-L 180

Query: 182 KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
            Y  + S+ EL     ++ +  PLT ET  ++NRE + A+    +L+N  RG  VD   L
Sbjct: 181 PYP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEAL 239

Query: 242 VSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           V AL  G L GAGLDV + EP  P   L+ L N V+ PH+GS    TR+ MA++ + NL 
Sbjct: 240 VEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLL 298

Query: 301 AHFLNKPLLTPVV 313
           A    +    PVV
Sbjct: 299 AVLEGREPPNPVV 311

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  328 bits (843), Expect = e-112
 Identities = 100/307 (32%), Positives = 155/307 (50%), Gaps = 9/307 (2%)

Query: 14  TYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL-PKLEIVS 72
             L +  +     +         +  +        ++   +   D  ++DA    L+++S
Sbjct: 23  VALARAADCEVEQWDSDEPIPAKELERGVAG-AHGLLCLLSDHVDKRILDAAGANLKVIS 81

Query: 73  SFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK 132
           + SVG+D + + + K++G+RV  TPDVLTD  A+LA+ L+L   RRL E+   V++G W 
Sbjct: 82  TMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWT 141

Query: 133 K--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEKPNLKYKY---Y 186
                +      T  TVGIIGLGRIG A+A+R + F      Y  R  +P    ++   +
Sbjct: 142 SWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF 201

Query: 187 PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246
            S  ELA+    +VVAC LT  T  + N++    +    V INI RG  V++ +L  AL 
Sbjct: 202 VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALA 261

Query: 247 EGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLN 305
            G++  AGLDV   EP      L  L+N V++PH+GS T  TR TM+ L   NL A    
Sbjct: 262 SGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRG 321

Query: 306 KPLLTPV 312
           +P+ + +
Sbjct: 322 EPMPSEL 328

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  323 bits (829), Expect = e-111
 Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 8/282 (2%)

Query: 35  KTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT 94
           +  F   +  ++  V     +   AE +  +P+L+ +   + GLD +         V V 
Sbjct: 18  RKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVA 76

Query: 95  NTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR 154
                  D VA+ A+ L+LA  +R+ +    ++ G + +          G+ V ++GLG 
Sbjct: 77  GNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD--VEIPLIQGEKVAVLGLGE 134

Query: 155 IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214
           IG  V K   A    +  +SRT K    +++  S+ E        V A PL + TR ++ 
Sbjct: 135 IGTRVGKILAALGAQVRGFSRTPKE-GPWRFTNSLEEALREARAAVCALPLNKHTRGLVK 193

Query: 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLE 272
            + +  +    V +N+GR   +D   ++  L E        DV+       +  E F L 
Sbjct: 194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLP 253

Query: 273 NVVLMPHVGSGTVETR--KTMADLVLGNLEAHFLNKPLLTPV 312
           NVV  P V  G    R  + M    + NL  +          
Sbjct: 254 NVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIA 295

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  311 bits (800), Expect = e-106
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 13/278 (4%)

Query: 48  AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADL 107
           A++       DA+ + A P+L ++     G D  D+  C  +GV +T  PD+LT   A+L
Sbjct: 48  AMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAEL 107

Query: 108 AIGLMLAVLRRLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAF 166
           AIGL + + R L  +D +VRSGK++    +   T     TVG +G+G IG+A+A R + +
Sbjct: 108 AIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGW 167

Query: 167 SCPINYYSRTE-KPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALG 222
              + Y+         + +      +  EL ++   +++A PL  +T H++N E++  + 
Sbjct: 168 GATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVR 227

Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENV 274
           P  +L+N  RG  VDE  +++AL  G+LGG   DVFE E          +   L    N 
Sbjct: 228 PGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT 287

Query: 275 VLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
           +  PH+GS     R  +      N+      +  +  V
Sbjct: 288 LFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  288 bits (739), Expect = 6e-97
 Identities = 86/265 (32%), Positives = 144/265 (54%), Gaps = 12/265 (4%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E+++   +L+++S  S G D +D+ +  ++G+ VT    +L++ VA+  +GL++ ++R
Sbjct: 55  TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKF-----TGKTVGIIGLGRIGMAVAKRAEAFSCPINY 172
           ++  +D+++R G+W+      T         GK VGI+G+G IG A+A+R   F   + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174

Query: 173 YSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV-LI 228
           +SR  K N++ +    Y  + EL     I+++A PLT +T HIIN E +  L  +G  L+
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL--EGKYLV 232

Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLE-NVVLMPHVGSGTVET 287
           NIGRG  VDE+ +  A+ +G+L G   DVFE EP    ELF  E   VL PH     +E 
Sbjct: 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEA 292

Query: 288 RKTMADLVLGNLEAHFLNKPLLTPV 312
           ++ +    + NL      +     V
Sbjct: 293 QEDVGFRAVENLLKVLRGEVPEDLV 317

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  280 bits (718), Expect = 7e-93
 Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 7/263 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E I     L++  +  +G D VD+    ++ V V       +  VA+  + ++L+++R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163

Query: 118 RLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
               S  + R G W   D            VG +  GRIG+AV +R   F   ++Y  R 
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH 223

Query: 177 EKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
             P      L   ++ +  ++   C ++ + CPL  ET H+IN E +        ++N  
Sbjct: 224 RLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT 290
           RG   D   +  AL  GRL G   DV+  +P   +     +    + PH+   T+  +  
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR 343

Query: 291 MADLVLGNLEAHFLNKPLLTPVV 313
            A      LE  F  +P+    +
Sbjct: 344 YAAGTREILECFFEGRPIRDEYL 366

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  268 bits (687), Expect = 4e-89
 Identities = 81/313 (25%), Positives = 139/313 (44%), Gaps = 11/313 (3%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           VLMA        ++L++    +  WT  D      A  + I  + GN        L    
Sbjct: 4   VLMAQATK---PEQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPL-LKTILARPT 59

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
            +L+ V   S G+D + +   +  GV V NT  +  D +++  +  ML+V+R    +   
Sbjct: 60  NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLN 119

Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY 185
            R  +        +T  TG+ + I G G+IG ++A +A A    +   + T  P   +  
Sbjct: 120 QRGARQWALPMTTST-LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE 178

Query: 186 ---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELV 242
              + +  +  +  + +V A PLT  T H+ + E+      + +LINIGRGP VD   L+
Sbjct: 179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALM 238

Query: 243 SALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
           +AL   +L  A LDV E EP +P +  L+  ++V++ PH+       R T+  +   N  
Sbjct: 239 TALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFA 297

Query: 301 AHFLNKPLLTPVV 313
               +  L+   V
Sbjct: 298 QFVKDGTLVRNQV 310

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  259 bits (663), Expect = 5e-86
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 7/251 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             +      + +++ + S G+D +D+    E  V  +N     +  VA+ A  L+LA  +
Sbjct: 40  IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAK 98

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
            + E++  +++G +++     TT   GK +GI+G G IG  VA  A+AF   +  Y+R+ 
Sbjct: 99  NILENNELMKAGIFRQ---SPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSS 155

Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237
                     S  +L      +++A PLT++TR ++N  ++        ++N+ R   V 
Sbjct: 156 VDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVS 215

Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVE-TRKTMADLVL 296
           + +++  L E        DV+ NEP        L N +L PHV  G           L  
Sbjct: 216 KPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLAF 273

Query: 297 GNLEAHFLNKP 307
            N+   F  + 
Sbjct: 274 ENVRNFFEGEG 284

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  259 bits (665), Expect = 2e-85
 Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 12/296 (4%)

Query: 29  FWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKE 88
           F       +  +   N     +   T     E ++    L I+     G D +D+    +
Sbjct: 47  FCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGD 106

Query: 89  KGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------ 142
            G+ V N P    ++ AD  +  +L + RR     + +R G   +   ++          
Sbjct: 107 LGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARI 166

Query: 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELASNCHI 198
            G+T+GIIGLGR+G AVA RA+AF   + +Y           L  +   ++ +L  +   
Sbjct: 167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDC 226

Query: 199 LVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF 258
           + + C L E   H+IN   +  +     L+N  RG  VDE+ L  AL EGR+ GA LDV 
Sbjct: 227 VTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 286

Query: 259 ENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
           E+EP    +  L    N++  PH    + +    M +     +      +   +  
Sbjct: 287 ESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLK 342

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  248 bits (636), Expect = 5e-81
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 7/263 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
            AE I     L+++ +  +G D +D+      G+ V          VA+  +  +L ++R
Sbjct: 77  TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136

Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
                   V  G+W             GKT+G +G GRIG  + +R + F C + Y+ R 
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196

Query: 177 EKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
           +           K+   + E+   C ++V+  PLTE+TR + N+E+I  L    +++N  
Sbjct: 197 QMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT 290
           RG  ++ + +V A+  G +GG   DV++ +P   +     + N  + PH    T++ +  
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316

Query: 291 MADLVLGNLEAHFLNKPLLTPVV 313
            A      LE +F  +   T   
Sbjct: 317 YAAGTKDMLERYFKGEDFPTENY 339

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  240 bits (615), Expect = 2e-78
 Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 5/242 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
              +I++ PKL++++   VGLD +D+   KEKG+ V N P   +  VA+LA+GLM +V R
Sbjct: 57  TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
           ++  +DR +R G W K +  +  +  GKT+GIIG GRIG  VAK A A    I  Y    
Sbjct: 117 KIAFADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175

Query: 178 KPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234
                 +    +  +  L     ++ +  PL E T H+IN E +  +    +LIN  RGP
Sbjct: 176 NEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGP 235

Query: 235 HVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMAD 293
            VD   LV AL EG + GAGLDVFE EP   +  L   +NVVL PH+G+ TVE ++    
Sbjct: 236 VVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV 295

Query: 294 LV 295
            V
Sbjct: 296 EV 297

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  229 bits (586), Expect = 9e-74
 Identities = 70/283 (24%), Positives = 113/283 (39%), Gaps = 19/283 (6%)

Query: 48  AVVGNATAGADAELIDALPK--LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
            VV        AE + AL    +  +S  +VG+D +DM K KE G ++TN P    + +A
Sbjct: 49  GVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIA 108

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
           + A      +LR+    D  V     +     +  +   + VG++G G IG    +  E 
Sbjct: 109 EHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIMEG 167

Query: 166 FSCPINYYSRTEKPNLKY--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
           F   +  Y     P L+    Y  S+ +L     ++ +  P      H+IN E I  +  
Sbjct: 168 FGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 227

Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP--------------EELF 269
             V++N+ RGP VD   ++  L  G++ G  +DV+E E  +                +L 
Sbjct: 228 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 287

Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
              NV++ P     T    + M      N       K   TPV
Sbjct: 288 ARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  229 bits (586), Expect = 1e-73
 Identities = 77/279 (27%), Positives = 117/279 (41%), Gaps = 26/279 (9%)

Query: 58  DAELIDALPKLEIVSSFSV----GLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
             +L+D LPKL+I+S            +D+  C +KGV V           A+L   L++
Sbjct: 62  TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120

Query: 114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFT---------GKTVGIIGLGRIGMAVAKRAE 164
           A  RR+ +    ++ G W++   K TT            G+T+GI G G+IG  VA    
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180

Query: 165 AFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA 220
           AF   +  + R           +    S   L     +L V   L +ETR II    +  
Sbjct: 181 AFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTR 240

Query: 221 LGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPH 279
           + P  + +N  R   V+E  +V+AL  GR G A +DVFE EP +    L  +EN +  PH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300

Query: 280 VGSGTVETRKTMADLVLGNLEA-------HFLNKPLLTP 311
           +G    E+ +    +   N+            N   L P
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNVDSVANPTALAP 339

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  226 bits (579), Expect = 2e-72
 Identities = 67/270 (24%), Positives = 111/270 (41%), Gaps = 15/270 (5%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKG--VRVTNTPDVLTDDVADLAIGLMLAV 115
             E ID   KL++V    VG D +D+    + G  + V          VA+  +  ML +
Sbjct: 75  TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134

Query: 116 LRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYY 173
           +R    +   + +  W+     K      GKT+  IG GRIG  V +R   F+   + YY
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194

Query: 174 SRTEKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
                P      +  +   ++ EL +   I+ V  PL   T+ +IN+E++        L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254

Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENV-----VLMPHVGS 282
           N  RG      ++ +AL  G+L G G DV+  +P   +     + N       + PH   
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG 314

Query: 283 GTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
            T++ +   A   +  LE+ F  K    P 
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  229 bits (585), Expect = 2e-71
 Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           DAE++ A PKL+IV+   VGLD VD+     +GV V N P       A+ A+ L+LA  R
Sbjct: 57  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
           ++  +D  +R   WK+  +   T+  GKTVG++GLGRIG  VA+R  AF   +  Y    
Sbjct: 117 QIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175

Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
             +R  +  ++     S+ +L +    + V  P T ET  +I++E +    P  +++N  
Sbjct: 176 SPARAAQLGIELL---SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
           RG  VDE  L  A+  G +  AGLDVF  EP     LF L  VV+ PH+G+ T E +   
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292

Query: 292 ADLVLGNLEAHFLNKPLLTPV 312
              V  ++      + +   V
Sbjct: 293 GTDVAESVRLALAGEFVPDAV 313

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  223 bits (571), Expect = 2e-71
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 10/257 (3%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
            A++I+A  KL++V     G+D VD+     KG+ V NTP+  +   A+L  G+++ + R
Sbjct: 80  TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
           ++ ++   ++ GKW++  +   T+  GKT+GI+GLGRIG  VA R ++F      Y    
Sbjct: 140 QIPQATASMKDGKWERKKFM-GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198

Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
               +    ++      + E+   C  + V  PL   T  ++N            ++N  
Sbjct: 199 SPEVSASFGVQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCA 255

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
           RG  VDE  L+ AL  G+  GA LDVF  EP     L   ENV+  PH+G+ T E +   
Sbjct: 256 RGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRC 315

Query: 292 ADLVLGNLEAHFLNKPL 308
            + +          K L
Sbjct: 316 GEEIAVQFVDMVKGKSL 332

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  222 bits (568), Expect = 2e-71
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 15/261 (5%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             ++I+   KL+I++   +GLD +D  + +++ ++V   P   TD   +L IGLM+A  R
Sbjct: 59  TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
           ++  S    +SG +KK       +  GKT+GI+G GRIG  V   A A    +  Y    
Sbjct: 119 KMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175

Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
              + EK N K     S+ EL  N  ++ +   ++++ + II+    + +    +++N  
Sbjct: 176 IREKAEKINAKAV---SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTS 232

Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEP---HVPEELFGLENVVLMPHVGSGTVETR 288
           R   V+ + L+  + +G++     DVF NEP       EL   E V++  H+G+ T E +
Sbjct: 233 RAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQ 292

Query: 289 KTMADLVLGNLEAHFLNKPLL 309
           K +A++   NL        ++
Sbjct: 293 KRVAEMTTQNLLNAMKELGMI 313

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  219 bits (559), Expect = 8e-70
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 18/283 (6%)

Query: 48  AVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
           AV+      A+ + +D   KL +  + + + G D +D    KE G  +   P    + +A
Sbjct: 48  AVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
           +LA+   + +LR    +        +K   +  + +    TVG++GLGRIG   A+    
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167

Query: 166 FSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
               +      E   ++ Y    S+ E+     I+ +  P  +E   ++ R+ +  +   
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDG 227

Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE---------------LF 269
            +L+N  RG  VD   ++ A+  G+LGG G DV + E  V  +               + 
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287

Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
               V++ PH+GS T E  K M ++   NL+           +
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  216 bits (553), Expect = 7e-69
 Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 17/282 (6%)

Query: 48  AVVGNATAGADAELIDAL--PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
            +    T    A + + +    ++ ++  +VG D +DM   K+ G+R++N P      +A
Sbjct: 47  GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIA 106

Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
           + A+   L +LR + +    +++G ++K    +  +   +TVG++G G IG    K  + 
Sbjct: 107 EFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKG 166

Query: 166 FSCPINYYSRTEKPNLKYKY-YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
           F   +  Y           + Y S+ +L     ++ +  P  E+  HIIN    + + P 
Sbjct: 167 FGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPG 226

Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP--------------HVPEELFG 270
            ++IN  R   +D + ++S L  G+L G G+D +E E                + +EL G
Sbjct: 227 AIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLG 286

Query: 271 LENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
           + NVVL PH+   T      M    L +L          T V
Sbjct: 287 MPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  206 bits (527), Expect = 4e-65
 Identities = 68/321 (21%), Positives = 136/321 (42%), Gaps = 22/321 (6%)

Query: 1   MESIGVLMACPMNTYLEQELE-RRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADA 59
           +    +L+    N + E+ L+       +     +++   K        ++         
Sbjct: 3   LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGE-AHILMAEP--ARAK 59

Query: 60  ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
            L+    KL    S   G+D + +     +  ++TN   +    +++   G +L+++R+L
Sbjct: 60  PLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQL 118

Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
                  +   W+   Y+      G+T+ I+G G IG  +A   + F   +   SR+ + 
Sbjct: 119 PLYREQQKQRLWQSHPYQG---LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE 175

Query: 180 NLKYKYYPSVV------ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
                 +  V       ++ +   ++V   P T ET H+      +   P  +L N+GRG
Sbjct: 176 ---RAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRG 232

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTM 291
             ++E +L++AL  G+LG A LDVFE EP +P +  L+G  N+++ PH  + +      +
Sbjct: 233 NAINEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYS--FPDDV 289

Query: 292 ADLVLGNLEAHFLNKPLLTPV 312
           A + + N       +PL   +
Sbjct: 290 AQIFVRNYIRFIDGQPLDGKI 310

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  205 bits (524), Expect = 1e-63
 Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 7/235 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             ++I+A  KL  + +F++G ++VD+    ++G+ V N P   T  VA+L IG +L +LR
Sbjct: 60  TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
            + E++     G   K     + +  GK +GIIG G IG  +   AE+    + +Y    
Sbjct: 120 GVPEANAKAHRGVGNKLAAG-SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN 178

Query: 178 KPNLKY-KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
           K  L        + +L +   ++ +  P    T++++  + I  + P  +LIN  RG  V
Sbjct: 179 KLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238

Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEE-----LFGLENVVLMPHVGSGTVE 286
           D   L  AL    L GA +DVF  EP    +     L   +NV+L PH+G  T E
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQE 293

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  205 bits (524), Expect = 2e-63
 Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 7/235 (2%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E+  A  +L  V  FSVG ++V++   +++G+ V N P   T  VA+L IG ++ ++R
Sbjct: 71  TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
           R+        +G W+K     + +  GKT+GI+G G IG  V   AE+    + YY  ++
Sbjct: 131 RIFPRSVSAHAGGWEKTAIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD 189

Query: 178 K-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
           K      K   S+ EL     ++ +  P ++ T  +I    +  +     LIN  RG  V
Sbjct: 190 KLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249

Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEE-----LFGLENVVLMPHVGSGTVE 286
           D   L   L EG L GA +DVF  EP    E     L GLENV+L PH+G  T E
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE 304

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  195 bits (498), Expect = 7e-61
 Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 26/294 (8%)

Query: 39  LKAQQNNIRAVVGNATAGADAE---------LIDALPKLEIVSSFSVGLDKV-----DMV 84
           L+    + R           A+          + A  +L+ V     G+D +        
Sbjct: 22  LEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHP 81

Query: 85  KCKEKGVRVTNTPDV-LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFT 143
           +  +  + +    D  +   + + A+  +L   RR  +         WK           
Sbjct: 82  EMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTRE--- 138

Query: 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELA---SNCHILV 200
             +VGI+G G +G  VA+  +A+  P+  +SR+ K     + Y    EL    +   +L+
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLI 198

Query: 201 VACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN 260
              P T +T  IIN E++D L     ++N+ RG HV E +L++AL  G+L GA LDVF  
Sbjct: 199 NLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQ 258

Query: 261 EPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
           EP +P+E  L+    V + PH+ + T        D +   +      +P+   V
Sbjct: 259 EP-LPQESPLWRHPRVAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPVTGQV 309

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  179 bits (455), Expect = 1e-53
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 25/233 (10%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
           +  L+     +  V + + G D VD    K+ G+  +  P      V +     +L +  
Sbjct: 53  NESLLSG-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
           R                          +T+GI+G+G +G  +  R EA            
Sbjct: 112 RDG-------------------FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR 152

Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRG 233
                   + ++ EL     +L    PL ++    T H+ +  +I  L P  +LIN  RG
Sbjct: 153 AARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVE 286
           P VD   L++ L  G+     LDV+E EP +   L    ++    H+   T+E
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGT-SHIAGYTLE 264

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  174 bits (442), Expect = 7e-52
 Identities = 46/254 (18%), Positives = 90/254 (35%), Gaps = 25/254 (9%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
               +     +  V + ++G D +D+    E G+  ++ P      V D  +G +LA+  
Sbjct: 50  SRAALAG-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE 108

Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
                                      +T G++G G++G  + +        +       
Sbjct: 109 VRG-------------------ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR 149

Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRG 233
           +       + S+  L +   ++ +  PL  +    TRH+++   + AL P   L+N  RG
Sbjct: 150 QAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209

Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293
             VD + L   L  G      LDV+E EP   +       ++  PH+   ++E +     
Sbjct: 210 AVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLEGKLRGTA 268

Query: 294 LVLGNLEAHFLNKP 307
            +     A      
Sbjct: 269 QIYQAYCAWRGIAE 282

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 27/218 (12%), Positives = 68/218 (31%), Gaps = 30/218 (13%)

Query: 45  NIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDV 104
            +  +  N +     E+I+  P   +V  +S   +       K+    +    +     +
Sbjct: 74  KVDTIFSNESIVLTEEMIEKTPNHCVV--YSGISNTYLNQCMKKTNRTLVKLMERDDIAI 131

Query: 105 ADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE 164
            +        ++  +  +D  +                 G  V ++GLGR+GM+VA++  
Sbjct: 132 YNSIPTAEGTIMMAIQHTDFTIH----------------GANVAVLGLGRVGMSVARKFA 175

Query: 165 AFSCPINYYSRTEKP-------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217
           A    +   +R            ++  +     +   +  + +   P       ++   V
Sbjct: 176 ALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANV 230

Query: 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGL 255
           +  +     +I++   P   +           L   GL
Sbjct: 231 LAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGL 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 42/303 (13%), Positives = 80/303 (26%), Gaps = 98/303 (32%)

Query: 1   MESIG--VLMACPMNTYLEQELERRFNLFK-FW----TVSDKTQFLKAQQNNIRAVVGNA 53
           +   G   +     +  L  +++ + + FK FW      +     L+  Q  +  +  N 
Sbjct: 158 VLGSGKTWVAL---DVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 54  TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
           T+ +D      L    I +     L       C            VL  +V +       
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----------LVL-LNVQNAKA---- 258

Query: 114 AVLRRLCESDRYVRSGKWKKGDYK----LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP 169
                            W   +      LTT+F   T  +       +++   +   +  
Sbjct: 259 -----------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-- 299

Query: 170 INYYSRTEKPNLKYKYYP-SVVEL---ASNCHILVVACPLTEETRHIINR---------- 215
                  E  +L  KY      +L       +   ++  + E  R  +            
Sbjct: 300 -----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353

Query: 216 ---EVI----DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEEL 268
               +I    + L P             + R++   L           VF    H+P  L
Sbjct: 354 KLTTIIESSLNVLEPA------------EYRKMFDRLS----------VFPPSAHIPTIL 391

Query: 269 FGL 271
             L
Sbjct: 392 LSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.83
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.81
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.75
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.7
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.69
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.65
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.57
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.55
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.54
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.44
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.42
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.41
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.4
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.39
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.39
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.37
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.36
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.33
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.33
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.31
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.31
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.29
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.28
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.27
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.23
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.22
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.21
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.19
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.19
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.18
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.18
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.16
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.16
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.15
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.15
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.13
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.12
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.11
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.1
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.09
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.08
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.08
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.07
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.06
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.04
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.04
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.01
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.01
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.0
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.98
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.97
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.97
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.97
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.47
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.92
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.89
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.89
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.86
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.86
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.85
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.84
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.84
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.84
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.84
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.83
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.82
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.81
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.76
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.75
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.75
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.74
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.72
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.72
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.72
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.69
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.69
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.64
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.62
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.61
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.61
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.61
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.61
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.57
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.56
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.56
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.56
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.56
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.55
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.52
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.52
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.51
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.51
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.5
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.5
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.49
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.49
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.48
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.47
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.47
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.47
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.47
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.47
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.46
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.45
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.45
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.41
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.4
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.38
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.25
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.23
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.23
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.22
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.18
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.15
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.12
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.12
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.12
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.08
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.08
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.07
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.06
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.04
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.02
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.02
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.93
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.91
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.9
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.88
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.87
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.87
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.86
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.86
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.85
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.84
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.83
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.79
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.73
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.73
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.72
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.7
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.66
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.66
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.66
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.65
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.64
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.63
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.62
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.6
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.59
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.58
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.58
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.55
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.55
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.54
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.53
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.52
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.52
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.51
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.51
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.5
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.5
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.49
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.48
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.48
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.47
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.47
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.45
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.44
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.43
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.4
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.39
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.39
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.37
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.35
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.35
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.35
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.32
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.32
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.29
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.27
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.26
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.23
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.23
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.22
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.22
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.2
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.15
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.15
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.12
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.12
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.1
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.1
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.08
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.08
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.07
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.05
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.04
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.99
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.98
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.97
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.96
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.95
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.92
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.91
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.9
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.88
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.87
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.86
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.85
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.85
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.84
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.81
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.8
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.8
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.79
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.79
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.75
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.75
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.74
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.74
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.7
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.69
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.67
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.67
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.65
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.65
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.65
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.64
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.62
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.62
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.61
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.61
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.6
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.59
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.58
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.56
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.52
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.52
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.5
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.5
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.49
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.49
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.49
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.48
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.46
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.44
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.44
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.44
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.42
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.41
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.41
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.4
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.39
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.38
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.38
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.37
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.36
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.34
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.33
4had_A	350	Probable oxidoreductase protein; structural genomi	96.33
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.3
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.29
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.28
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.28
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.26
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.25
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.23
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.23
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.2
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.2
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.2
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.2
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.15
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.14
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.14
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.14
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.13
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.12
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.11
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.11
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.09
3on5_A	362	BH1974 protein; structural genomics, joint center	96.05
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.02
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.02
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.01
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.99
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.96
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.94
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.94
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.93
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.92
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.9
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.88
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.88
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.88
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.87
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.86
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.86
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.85
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.84
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.81
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.8
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.8
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.79
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.79
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.78
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.78
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.77
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.76
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.75
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.74
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.71
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.69
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.69
2csu_A	457	457AA long hypothetical protein; structural genomi	95.68
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.67
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.66
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.63
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.61
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.6
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.58
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.58
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.58
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.57
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.52
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.51
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.49
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.47
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.46
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.46
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.46
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.44
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.44
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.44
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.43
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.43
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.43
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.4
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.39
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.36
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.34
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.33
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.33
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.32
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.31
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.31
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.29
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.28
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.26
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.25
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.25
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.24
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.24
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.22
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.19
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.18
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.17
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.14
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.13
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.12
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.09
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.08
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.08
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.07
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.06
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.06
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.04
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.01
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.0
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.0
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.99
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.98
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.97
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.95
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.95
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.92
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	94.91
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.9
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.9
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	94.87
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.86
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.81
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.8
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	94.79
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.77
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.77
1lnq_A	336	MTHK channels, potassium channel related protein;	94.76
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.76
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.74
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.74
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.73
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.73
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.69
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.66
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.66
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.65
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.64
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.64
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.63
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.63
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.62
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.62
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	94.6
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.6
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.6
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.6
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.58
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.53
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.44
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.44
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.43
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.41
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.39
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	94.37
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.36
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.36
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.25
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.25
3npg_A	249	Uncharacterized DUF364 family protein; protein wit	94.19
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.18
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.17
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.16
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	94.15
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.13
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.11
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.08
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.06
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	94.06
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.05
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.04
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.03
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.03
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	94.03
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.98
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.95
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.95
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	93.94
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	93.93
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.93
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	93.92
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.92
3l5o_A	270	Uncharacterized protein from DUF364 family; RARE m	93.91
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	93.9
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.89
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	93.87
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.86

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2e-74  Score=541.72  Aligned_cols=312  Identities=41%  Similarity=0.696  Sum_probs=258.2

Q ss_pred             CCceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |+||+||+++++.+...+.|++.|++..++...+.++++.+ .+++|++++++..++++++++++|+||||++.|+|+|+
T Consensus        28 ~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~-~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~  106 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAA-LPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDK  106 (340)
T ss_dssp             -----CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHH-GGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCCTT
T ss_pred             CCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHH-hCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCccc
Confidence            67899999999999999999988987755332234444444 48999999988888999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC-CcccccccCCCEEEEEcCChHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG-DYKLTTKFTGKTVGIIGLGRIGMAV  159 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~-~~~~~~~l~g~~igiiG~G~iG~~i  159 (313)
                      ||+++++++||.|+|+||+++.+||||+++++|+++|+++++++.+++|.|.+. .++.+.+++|++|||||+|.||+.+
T Consensus       107 id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~v  186 (340)
T 4dgs_A          107 VDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRAL  186 (340)
T ss_dssp             BCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHH
T ss_pred             cCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999854 3345789999999999999999999


Q ss_pred             HHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          160 AKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       160 A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      |+++++|||+|++|||++....+.....++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|++
T Consensus       187 A~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~  266 (340)
T 4dgs_A          187 ASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDED  266 (340)
T ss_dssp             HHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC------
T ss_pred             HHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHH
Confidence            99999999999999998876555555678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      +|+++|++|++.||+||||++||++++|||++|||++|||+|++|.++++++...+++||.+|++|+++.++||
T Consensus       267 aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          267 ALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             --------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999997

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.1e-72  Score=530.92  Aligned_cols=313  Identities=33%  Similarity=0.491  Sum_probs=284.9

Q ss_pred             CCceEEEEeCCCChhHHHHHHhcCcEEEee-cCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhC-CCccEEEEcCcCC
Q 021388            1 MESIGVLMACPMNTYLEQELERRFNLFKFW-TVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL-PKLEIVSSFSVGL   78 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~   78 (313)
                      |+||+||+++++.+...+.|++.|++.... +.+.+++++.+.++++|++++++..++++++++++ |+||||++.|+|+
T Consensus        26 ~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~  105 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGY  105 (345)
T ss_dssp             -CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcc
Confidence            468999999999999999999988766432 22335566667789999999987788999999997 7999999999999


Q ss_pred             CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC--cccccccCCCEEEEEcCChHH
Q 021388           79 DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD--YKLTTKFTGKTVGIIGLGRIG  156 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~--~~~~~~l~g~~igiiG~G~iG  156 (313)
                      |+||++++.++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|.+..  ...+.++.|++|||||+|.||
T Consensus       106 D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG  185 (345)
T 4g2n_A          106 DHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIG  185 (345)
T ss_dssp             TTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHH
T ss_pred             cccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhH
Confidence            999999999999999999999999999999999999999999999999999997422  234789999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEecCCCCCc---cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          157 MAVAKRAEAFSCPINYYSRTEKPN---LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       157 ~~iA~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      +.+|+++++|||+|++|||++...   .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||
T Consensus       186 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG  265 (345)
T 4g2n_A          186 RAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG  265 (345)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCC
Confidence            999999999999999999986432   23444568999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       234 ~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      +++|+++|+++|++|++.||+||||++||.+.+|||++|||++|||+|++|.++++++.+.+++||.+|++|+++.++|+
T Consensus       266 ~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             GGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             chhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999555699999999999999999999999999999999999999999999885

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=2.8e-70  Score=512.85  Aligned_cols=310  Identities=27%  Similarity=0.443  Sum_probs=281.9

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEee-cCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFW-TVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      |++||+++++.+...+.|++.++++... +.+.+++++.+.++++|++++++..++++++++++|+||||++.|+|+||+
T Consensus         2 ~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~i   81 (330)
T 4e5n_A            2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNF   81 (330)
T ss_dssp             CCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTTB
T ss_pred             CCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCccccc
Confidence            7899999999999999999988655332 122345556677899999999777899999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC-CcccccccCCCEEEEEcCChHHHHHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG-DYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~-~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      |++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|... ....+.++.|++|||||+|.||+.+|
T Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA  161 (330)
T 4e5n_A           82 DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMA  161 (330)
T ss_dssp             CHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHH
T ss_pred             CHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999721 12347789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          161 KRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      +++++|||+|++||+++...     .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus       162 ~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~  240 (330)
T 4e5n_A          162 DRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV  240 (330)
T ss_dssp             HHTTTSCCEEEEECSSCCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HHHHHCCCEEEEECCCCCcHhHHHhcCce-eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch
Confidence            99999999999999987322     1222 34899999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeeEEEecCCCCC-------CCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          236 VDERELVSALVEGRLGGAGLDVFENE-------PHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       236 vd~~al~~al~~~~l~ga~lDV~~~E-------p~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      +|+++|+++|++|++.||++|||+.|       |++.+ |||++|||++|||+||+|.++.+++.+.+++||.+|++|++
T Consensus       241 vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~  320 (330)
T 4e5n_A          241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGER  320 (330)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999       97654 89999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 021388          308 LLTPVV  313 (313)
Q Consensus       308 ~~~~v~  313 (313)
                      +.+.||
T Consensus       321 ~~~~vn  326 (330)
T 4e5n_A          321 PINAVN  326 (330)
T ss_dssp             CTTBSS
T ss_pred             CCCccC
Confidence            999987

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.3e-69  Score=519.25  Aligned_cols=311  Identities=27%  Similarity=0.407  Sum_probs=277.9

Q ss_pred             CceEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            2 ESIGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +|+|||+++++.+...+.|++. ++.+.+.+...+++++.+.++++|++++++.+++++++++++|+||+|++.++|+||
T Consensus        14 ~~~kIl~~~~i~~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   93 (416)
T 3k5p_A           14 DRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQ   93 (416)
T ss_dssp             GGSCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSSCCTT
T ss_pred             CCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEECccccCc
Confidence            3689999999999988889876 523333333345566667789999998888889999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      +|+++|+++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|.+... .+.+++||++||||+|.||+.+|
T Consensus        94 IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~-~~~el~gktvGIIGlG~IG~~vA  172 (416)
T 3k5p_A           94 VELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAI-GSREVRGKTLGIVGYGNIGSQVG  172 (416)
T ss_dssp             BCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCT-TCCCSTTCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCC-CCccCCCCEEEEEeeCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985433 46789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCcc-ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          161 KRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      +++++|||+|++||+++.... +.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++
T Consensus       173 ~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~  252 (416)
T 3k5p_A          173 NLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE  252 (416)
T ss_dssp             HHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHH
T ss_pred             HHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHH
Confidence            999999999999999865433 2344678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCC-----CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVP-----EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~-----~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      +|+++|++|++.||++|||+.||+++     +|||++|||++|||+||+|.++++++...+++||.+|++|+.+.+.||
T Consensus       253 aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn  331 (416)
T 3k5p_A          253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVN  331 (416)
T ss_dssp             HHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCceee
Confidence            99999999999999999999999875     489999999999999999999999999999999999999888888886

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.6e-70  Score=515.05  Aligned_cols=271  Identities=28%  Similarity=0.430  Sum_probs=249.9

Q ss_pred             ccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhH
Q 021388           42 QQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCE  121 (313)
Q Consensus        42 ~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~  121 (313)
                      .++++|+++++..+++++++++++|+||||++.|+|+||+|+++|.++||.|+|+||+++.+||||+++++|++.|++.+
T Consensus        39 ~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~  118 (334)
T 3kb6_A           39 ELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKR  118 (334)
T ss_dssp             HHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccc
Confidence            35678999998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--cccCCCHHHHhhcCCEE
Q 021388          122 SDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--YKYYPSVVELASNCHIL  199 (313)
Q Consensus       122 ~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~~~~~~l~e~~~~aDvV  199 (313)
                      +++.++.+.|.......+.++.|+++||||+|+||+.+|+++++|||+|++||+.......  .....++++++++||+|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDiv  198 (334)
T 3kb6_A          119 IEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVI  198 (334)
T ss_dssp             HHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEE
T ss_pred             ccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEE
Confidence            9999999998754444678999999999999999999999999999999999987653221  22356899999999999


Q ss_pred             EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-------------
Q 021388          200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-------------  266 (313)
Q Consensus       200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-------------  266 (313)
                      ++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.+             
T Consensus       199 slh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~  278 (334)
T 3kb6_A          199 SLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNL  278 (334)
T ss_dssp             EECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHH
T ss_pred             EEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999997421             


Q ss_pred             ---cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388          267 ---ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       267 ---~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  312 (313)
                         |||++|||++|||+||+|.++++++.+.+++||.+|++|+++..++
T Consensus       279 ~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~  327 (334)
T 3kb6_A          279 KILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKG  327 (334)
T ss_dssp             HHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGG
T ss_pred             cchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence               5899999999999999999999999999999999999999764433

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1.2e-69  Score=506.31  Aligned_cols=304  Identities=22%  Similarity=0.380  Sum_probs=270.6

Q ss_pred             CCceEEEEeCCCChhHHHHH-HhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCC
Q 021388            1 MESIGVLMACPMNTYLEQEL-ERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |+|+|||++++..+.+.+.| ++.++.+.+....+ .++..+.++++|+++++.  .+++++++++|+||||++.|+|+|
T Consensus         3 ~~~mkili~~~~~~~~~~~L~~~~~p~~~~~~~~~-~~~~~~~~~~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G~d   79 (324)
T 3hg7_A            3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADN-QSDAEKLIGEAHILMAEP--ARAKPLLAKANKLSWFQSTYAGVD   79 (324)
T ss_dssp             -CCEEEEEESTTHHHHHHHHHHSCCTTEEEEECSS-HHHHHHHGGGCSEEEECH--HHHGGGGGGCTTCCEEEESSSCCG
T ss_pred             ccccEEEEecCCCHHHHHHHhhccCCCeEEEeCCC-hhHHHHHhCCCEEEEECC--CCCHHHHhhCCCceEEEECCCCCC
Confidence            57899999999999999999 66664333322222 344556788999999843  456789999999999999999999


Q ss_pred             cCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHH
Q 021388           80 KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAV  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~i  159 (313)
                      ++|++++. +||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.+.   .+.+++|++|||||+|.||+.+
T Consensus        80 ~id~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~~l~g~tvGIIGlG~IG~~v  155 (324)
T 3hg7_A           80 VLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH---PYQGLKGRTLLILGTGSIGQHI  155 (324)
T ss_dssp             GGSCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CCCCSTTCEEEEECCSHHHHHH
T ss_pred             ccChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC---CCcccccceEEEEEECHHHHHH
Confidence            99998875 4999999999999999999999999999999999999999999753   3578999999999999999999


Q ss_pred             HHHHHhCCCCEEEecCCCCCcccc---ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          160 AKRAEAFSCPINYYSRTEKPNLKY---KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       160 A~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      |+++++|||+|++|||++.....+   ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++
T Consensus       156 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~v  235 (324)
T 3hg7_A          156 AHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI  235 (324)
T ss_dssp             HHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGB
T ss_pred             HHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhh
Confidence            999999999999999987543322   23468999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          237 DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      |+++|+++|++|++.||++|||++||++.+ |||++|||++|||+||+|.+  .++.+.+++||.+|++|+++.++||
T Consensus       236 de~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~  311 (324)
T 3hg7_A          236 NEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKID  311 (324)
T ss_dssp             CHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             CHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEC
Confidence            999999999999999999999999998765 99999999999999999976  6899999999999999999999986

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=8.7e-69  Score=514.64  Aligned_cols=309  Identities=27%  Similarity=0.371  Sum_probs=271.8

Q ss_pred             ceEEEEeCCCChhHHHHHHhc-C-cEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            3 SIGVLMACPMNTYLEQELERR-F-NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +++||+++++.+...+.|.+. + ++... +...+++++.+.++++|++++++.+++++++++++|+||+|++.++|+||
T Consensus         4 ~~kil~~~~~~~~~~~~l~~~~~~~v~~~-~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   82 (404)
T 1sc6_A            4 KIKFLLVEGVHQKALESLRAAGYTNIEFH-KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQ   82 (404)
T ss_dssp             SCCEEECSCCCHHHHHHHHHTTCCCEEEC-SSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTT
T ss_pred             ceEEEEeCCCCHHHHHHHHhCCCcEEEEc-CCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCcccCc
Confidence            578999999988888888775 5 45443 32334555667788999998888889999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      +|+++|+++||.|+|+|++++.+||||++++||++.|+++++++.+++|.|.+..+ .+.+++||++||||+|.||+.+|
T Consensus        83 iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~-~~~el~gktlGiIGlG~IG~~vA  161 (404)
T 1sc6_A           83 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAA-GSFEARGKKLGIIGYGHIGTQLG  161 (404)
T ss_dssp             BCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------CCCSTTCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCC-CccccCCCEEEEEeECHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999975432 46789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCccc-cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          161 KRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      +++++|||+|++|||+.....+ .....++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|++
T Consensus       162 ~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~  241 (404)
T 1sc6_A          162 ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP  241 (404)
T ss_dssp             HHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             HHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHH
Confidence            9999999999999998765433 344568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCC-----CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVP-----EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~-----~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      +|.++|++|++.||++|||+.||++.     +|||++|||++|||+|++|.++.+++...+++|+.+|++|+++.+.||
T Consensus       242 aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~vn  320 (404)
T 1sc6_A          242 ALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVN  320 (404)
T ss_dssp             HHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcceec
Confidence            99999999999999999999999863     489999999999999999999999999999999999999999888876

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=5.4e-68  Score=497.73  Aligned_cols=313  Identities=81%  Similarity=1.291  Sum_probs=286.9

Q ss_pred             CCceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |+|++||+++++.+...+.|.+.+++..++.....++++.+.++++|++++++..++++++++++|+||||++.|+|+|+
T Consensus        21 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~  100 (333)
T 3ba1_A           21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDK  100 (333)
T ss_dssp             -CCCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCccccc
Confidence            77899999999888888889888876554333344555667788999999877778999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      +|+++++++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|.+.....+.++.|++|||||+|.||+.+|
T Consensus       101 id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA  180 (333)
T 3ba1_A          101 VDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVA  180 (333)
T ss_dssp             BCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999974333356789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHH
Q 021388          161 KRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      ++++++|++|++||++++...+.....++++++++||+|++|+|.+++|+++++++.++.||+|++|||++||.++|+++
T Consensus       181 ~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~a  260 (333)
T 3ba1_A          181 ERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE  260 (333)
T ss_dssp             HHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHH
T ss_pred             HHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHH
Confidence            99999999999999988765555556789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       241 l~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      |.++|++|++.||++|||++||++.+|||++|||++|||+|+.|.++..++.+.+++||.+|++|+++.++||
T Consensus       261 L~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999877899999999999999999999999999999999999999999999987

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=3.3e-68  Score=502.18  Aligned_cols=309  Identities=25%  Similarity=0.377  Sum_probs=272.2

Q ss_pred             CCceEEEEeCCCChh-----HHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEE-eCCCCCCHHHHhhCCCccEEEEc
Q 021388            1 MESIGVLMACPMNTY-----LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVG-NATAGADAELIDALPKLEIVSSF   74 (313)
Q Consensus         1 m~~~~vl~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~Lk~i~~~   74 (313)
                      |+ |||++++.....     .++.+.. +++..+.+...+++++.+.++++|++++ +...++++++++++|+||+|++.
T Consensus         1 ms-mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~   78 (352)
T 3gg9_A            1 MS-LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQT   78 (352)
T ss_dssp             -C-CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEES
T ss_pred             Cc-eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEe
Confidence            66 899998875432     1233433 6555543332345556677899999998 46678999999999999999999


Q ss_pred             CcCC----CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC---------cccccc
Q 021388           75 SVGL----DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD---------YKLTTK  141 (313)
Q Consensus        75 ~~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---------~~~~~~  141 (313)
                      |+|+    |+||++++.++||.|+|+||+ +.+||||+++++|++.|++..+++.+++|.|.+..         ...+.+
T Consensus        79 g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~  157 (352)
T 3gg9_A           79 GRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRV  157 (352)
T ss_dssp             SCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCC
T ss_pred             CcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCcc
Confidence            9999    999999999999999999999 99999999999999999999999999999997532         124678


Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.|++|||||+|.||+.+|+++++|||+|++||++...    ..+.....++++++++||+|++|+|++++|+++++++.
T Consensus       158 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  237 (352)
T 3gg9_A          158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD  237 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHH
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHH
Confidence            99999999999999999999999999999999997532    12444556899999999999999999999999999999


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC-CcccCCCceEEccCCCCCcHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADLVL  296 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~-~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~  296 (313)
                      |+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++. +|||++|||++|||+|+.|.++++++...++
T Consensus       238 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~  317 (352)
T 3gg9_A          238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAF  317 (352)
T ss_dssp             HTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875 4999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCC
Q 021388          297 GNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       297 ~nl~~~~~g~~~~~~v~  313 (313)
                      +||.+|++|+|+ +.||
T Consensus       318 ~ni~~~~~G~p~-~~Vn  333 (352)
T 3gg9_A          318 QNILDILQGNVD-SVAN  333 (352)
T ss_dssp             HHHHHHHTTCCT-TBSC
T ss_pred             HHHHHHHcCCCC-cccC
Confidence            999999999874 7776

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.4e-68  Score=499.58  Aligned_cols=303  Identities=25%  Similarity=0.375  Sum_probs=268.8

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHH-hhCCCccEEEEcCcCCCcCC
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELI-DALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~Lk~i~~~~~G~d~id   82 (313)
                      +|||+++++.+...+.|++.++.+.+...+.   ...+.+.++|+++++. .++ ++++ +++|+||||++.|+|+|++|
T Consensus         2 ~kil~~~~~~~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G~d~id   76 (324)
T 3evt_A            2 SLVLMAQATKPEQLQQLQTTYPDWTFKDAAA---VTAADYDQIEVMYGNH-PLL-KTILARPTNQLKFVQVISAGVDYLP   76 (324)
T ss_dssp             CEEEECSCCCHHHHHHHHHHCTTCEEEETTS---CCTTTGGGEEEEESCC-THH-HHHHHSTTCCCCEEECSSSCCTTSC
T ss_pred             cEEEEecCCCHHHHHHHHhhCCCeEEecCCc---cChHHhCCcEEEEECC-cCh-HHHHHhhCCCceEEEECCccccccC
Confidence            5799999999999999998864222211111   1123457899998854 346 8889 78999999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHH-HHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCES-DRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK  161 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~-~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~  161 (313)
                      ++++.++||.|+|+||+++.+||||+++++|++.|++.++ ++.+++|.|.+..  .+.++.|++|||||+|.||+.+|+
T Consensus        77 ~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~--~~~~l~gktvGIiGlG~IG~~vA~  154 (324)
T 3evt_A           77 LKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM--TTSTLTGQQLLIYGTGQIGQSLAA  154 (324)
T ss_dssp             HHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS--CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             HHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC--CCccccCCeEEEECcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999 9999999998542  477899999999999999999999


Q ss_pred             HHHhCCCCEEEecCCCCCcccc---ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccH
Q 021388          162 RAEAFSCPINYYSRTEKPNLKY---KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       162 ~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                      ++++|||+|++|||++......   ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus       155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  234 (324)
T 3evt_A          155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT  234 (324)
T ss_dssp             HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH
T ss_pred             HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH
Confidence            9999999999999987654332   1245789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCCCCC
Q 021388          239 RELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNK-PLLTPVV  313 (313)
Q Consensus       239 ~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~-~~~~~v~  313 (313)
                      ++|+++|++|++.||++|||++||++.+ |||++|||++|||+||.|.++.+++.+.+++||.+|++|+ ++.|.||
T Consensus       235 ~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~  311 (324)
T 3evt_A          235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVD  311 (324)
T ss_dssp             HHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC
T ss_pred             HHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceEC
Confidence            9999999999999999999999998864 9999999999999999999999999999999999999755 6788876

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.6e-68  Score=504.00  Aligned_cols=305  Identities=22%  Similarity=0.356  Sum_probs=268.9

Q ss_pred             ceEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCC--CCCCHHHHhhCCCccEEEEcCcCCC
Q 021388            3 SIGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNAT--AGADAELIDALPKLEIVSSFSVGLD   79 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      +|++|-.++....+.+.|++. ++++.+.+....++++.+.++++|++++++.  .++++++++++|+||||++.|+|+|
T Consensus        19 ~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d   98 (351)
T 3jtm_A           19 NPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSD   98 (351)
T ss_dssp             CTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCT
T ss_pred             CCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeec
Confidence            344444444444667788776 5655543332244456778899999998653  4689999999999999999999999


Q ss_pred             cCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-ccccccCCCEEEEEcCChHHHH
Q 021388           80 KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMA  158 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~igiiG~G~iG~~  158 (313)
                      |+|++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..... ..+.++.|++|||||+|.||+.
T Consensus        99 ~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~  178 (351)
T 3jtm_A           99 HIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKL  178 (351)
T ss_dssp             TBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHH
T ss_pred             ccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHH
Confidence            999999999999999999999999999999999999999999999999999974221 2357899999999999999999


Q ss_pred             HHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          159 VAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       159 iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      +|+++++|||+|++||+++...     .+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||
T Consensus       179 vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG  258 (351)
T 3jtm_A          179 LLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG  258 (351)
T ss_dssp             HHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCc
Confidence            9999999999999999986432     23444568999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       234 ~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      +++|+++|+++|++|++.||++|||++||++.+ |||++|||++|||+||.|.+++.++.+.+.+||.+|++|++
T Consensus       259 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~  333 (351)
T 3jtm_A          259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED  333 (351)
T ss_dssp             GGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999998765 99999999999999999999999999999999999999996

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=3e-68  Score=500.37  Aligned_cols=308  Identities=20%  Similarity=0.285  Sum_probs=263.4

Q ss_pred             eEEEEeCC--CChhHHHHHHhc--CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHH-HHhhCC--CccEEEEcCc
Q 021388            4 IGVLMACP--MNTYLEQELERR--FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE-LIDALP--KLEIVSSFSV   76 (313)
Q Consensus         4 ~~vl~~~~--~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~--~Lk~i~~~~~   76 (313)
                      +||++.+.  ......+.+.+.  +++... +...+++ ..+.++++|+++++...+++++ +++++|  +||+|++.|+
T Consensus         2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~-~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (343)
T 2yq5_A            2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTT-DQALTSA-TVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIV   79 (343)
T ss_dssp             CEEEEESCCGGGHHHHHHHHHHHTCEEEEE-SSCCSTT-GGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSS
T ss_pred             ceEEEEecCcccHHHHHHHHHhCCeEEEEC-CCCCCHH-HHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECce
Confidence            56677552  222333444333  344333 3222333 3467889999999877899999 999986  6999999999


Q ss_pred             CCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHh-cCCCCCCCcccccccCCCEEEEEcCChH
Q 021388           77 GLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVR-SGKWKKGDYKLTTKFTGKTVGIIGLGRI  155 (313)
Q Consensus        77 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~-~~~w~~~~~~~~~~l~g~~igiiG~G~i  155 (313)
                      |+|+||++++.++||.|+|+||+++.+||||+++++|++.|++..+++.++ +|.|.......+.++.|++|||||+|.|
T Consensus        80 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~I  159 (343)
T 2yq5_A           80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHI  159 (343)
T ss_dssp             CCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHH
T ss_pred             eecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHH
Confidence            999999999999999999999999999999999999999999999999999 8876532223578999999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEecCCCCCccc-cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          156 GMAVAKRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       156 G~~iA~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      |+.+|+++++|||+|++||+++..... .....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus       160 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~  239 (343)
T 2yq5_A          160 GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGE  239 (343)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCCh
Confidence            999999999999999999998764221 1223489999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeeEEEecCCCCCC--CCCC------------cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHH
Q 021388          235 HVDERELVSALVEGRLGGAGLDVFENEP--HVPE------------ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE  300 (313)
Q Consensus       235 ~vd~~al~~al~~~~l~ga~lDV~~~Ep--~~~~------------~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~  300 (313)
                      ++|+++|+++|++|++.||+||||++||  ++.+            |||++|||++|||+|++|.++++++.+.+++||.
T Consensus       240 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~  319 (343)
T 2yq5_A          240 LVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQL  319 (343)
T ss_dssp             GBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999  4433            7999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 021388          301 AHFLNKPLLTPVV  313 (313)
Q Consensus       301 ~~~~g~~~~~~v~  313 (313)
                      +|++|+++.++||
T Consensus       320 ~~l~g~~~~~~v~  332 (343)
T 2yq5_A          320 TIAKGGRPRSIVN  332 (343)
T ss_dssp             HHHTTCCCTTBC-
T ss_pred             HHHcCCCCCceEC
Confidence            9999999999986

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=8e-68  Score=500.62  Aligned_cols=296  Identities=19%  Similarity=0.319  Sum_probs=258.7

Q ss_pred             ChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEc-CcCCCcCChhhhhhcCc
Q 021388           13 NTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSF-SVGLDKVDMVKCKEKGV   91 (313)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~-~~G~d~id~~~~~~~gI   91 (313)
                      .+..++.|++.++++.. +....++++++...++++++.  ..++++++++++|+||+|+.. ++|+|++|+++|+++||
T Consensus        45 ~~~~~~~L~~~~~v~~~-~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI  121 (365)
T 4hy3_A           45 SDEARAALHSKYEIVEA-DPENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGI  121 (365)
T ss_dssp             CHHHHHHHHHHSEEEEC-CGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCC
T ss_pred             CHHHHHHHhCCcEEEEC-CCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCe
Confidence            45577889888877643 222333434444467888775  368999999999999999975 89999999999999999


Q ss_pred             EEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCC--CCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCC
Q 021388           92 RVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK--WKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP  169 (313)
Q Consensus        92 ~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~--w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~  169 (313)
                      .|+|+||+++.+||||+++++|++.|++.++++.+++|.  |.......+.++.|++|||||+|.||+.+|+++++|||+
T Consensus       122 ~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~  201 (365)
T 4hy3_A          122 HVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRAR  201 (365)
T ss_dssp             EEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCE
T ss_pred             EEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCE
Confidence            999999999999999999999999999999999999998  543222357889999999999999999999999999999


Q ss_pred             EEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388          170 INYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL  245 (313)
Q Consensus       170 V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al  245 (313)
                      |++||++....    .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||+++|+++|
T Consensus       202 V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  280 (365)
T 4hy3_A          202 IRVFDPWLPRSMLEENGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAV  280 (365)
T ss_dssp             EEEECSSSCHHHHHHTTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHH
T ss_pred             EEEECCCCCHHHHhhcCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHH
Confidence            99999986432    1222 458999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          246 VEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       246 ~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      ++|+|. |+||||++||++.+ |||++|||++|||+||.|.+++.++...+++||.+|++|+++.+.||
T Consensus       281 ~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn  348 (365)
T 4hy3_A          281 SSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPMRCKR  348 (365)
T ss_dssp             HTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred             HcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence            999998 89999999998764 99999999999999999999999999999999999999999988765

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.8e-66  Score=484.14  Aligned_cols=304  Identities=27%  Similarity=0.436  Sum_probs=267.6

Q ss_pred             ceEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            3 SIGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      .++|++++++.+...+.|++. +++..+ .. .+++++.+.++++|++++++..++++++++++|+||||++.++|+|++
T Consensus        26 ~~~vli~~~~~~~~~~~l~~~~~~v~~~-~~-~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i  103 (335)
T 2g76_A           26 LRKVLISDSLDPCCRKILQDGGLQVVEK-QN-LSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNV  103 (335)
T ss_dssp             CCEEEECSCCCHHHHHHHHHHTCEEEEC-CS-CCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCTTB
T ss_pred             ceEEEEcCCCCHHHHHHHHhCCCEEEEC-CC-CCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcchh
Confidence            458999999888888888775 444332 22 234445566789999999877789999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK  161 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~  161 (313)
                      |++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.+... .+.++.|++|||||+|.||+.+|+
T Consensus       104 d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~l~g~tvgIIGlG~IG~~vA~  182 (335)
T 2g76_A          104 DLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVAT  182 (335)
T ss_dssp             CHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGG-CBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             ChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCC-CCcCCCcCEEEEEeECHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999974322 467899999999999999999999


Q ss_pred             HHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          162 RAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       162 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      ++++||++|++||++....    .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|
T Consensus       183 ~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd  261 (335)
T 2g76_A          183 RMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVD  261 (335)
T ss_dssp             HHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             HHHHCCCEEEEECCCcchhhhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccC
Confidence            9999999999999986542    1222 3589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021388          238 ERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLT  310 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  310 (313)
                      +++|+++|++|++.||+||||+.||.+.+|||++||+++|||+|++|.++.+++.+.+++||.+|++|+++.|
T Consensus       262 ~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          262 EGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999666799999999999999999999999999999999999999998865

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=7.1e-66  Score=483.60  Aligned_cols=310  Identities=22%  Similarity=0.326  Sum_probs=270.2

Q ss_pred             eEEEEeC--CCChhHHHHHHhcCcE-EEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcCcCC
Q 021388            4 IGVLMAC--PMNTYLEQELERRFNL-FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPK--LEIVSSFSVGL   78 (313)
Q Consensus         4 ~~vl~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~   78 (313)
                      |||++.+  +......+.+.+.+++ +.+.....++++..+.++++|+++++...++++++++++|+  ||||++.|+|+
T Consensus         1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~   80 (331)
T 1xdw_A            1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGT   80 (331)
T ss_dssp             CEEEECSCCTTTHHHHHHHGGGTCCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCC
T ss_pred             CEEEEEecCccCHHHHHHHHHhcCeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccccc
Confidence            3677754  4445566777665542 22223222334455678899999998777899999999998  99999999999


Q ss_pred             CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHH
Q 021388           79 DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMA  158 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~  158 (313)
                      |++|++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.......+.++.|++|||||+|.||+.
T Consensus        81 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~  160 (331)
T 1xdw_A           81 DHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRV  160 (331)
T ss_dssp             TTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHH
T ss_pred             cccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999998531112467899999999999999999


Q ss_pred             HHHHHHhCCCCEEEecCCCCCcc-ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          159 VAKRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       159 iA~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      +|+++++|||+|++||++..... ......++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|
T Consensus       161 ~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd  240 (331)
T 1xdw_A          161 AAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVD  240 (331)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBC
T ss_pred             HHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccccc
Confidence            99999999999999999876432 11123589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEecCCCCCCC--CC--------C----cccCC-CceEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 021388          238 ERELVSALVEGRLGGAGLDVFENEPH--VP--------E----ELFGL-ENVVLMPHVGSGTVETRKTMADLVLGNLEAH  302 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lDV~~~Ep~--~~--------~----~L~~~-pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~  302 (313)
                      +++|+++|++|++.||+||||++||+  +.        +    |||++ |||++|||+|++|.++..++.+.+++||.+|
T Consensus       241 ~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~  320 (331)
T 1xdw_A          241 TEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDL  320 (331)
T ss_dssp             HHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999994  21        2    69999 9999999999999999999999999999999


Q ss_pred             HcCCCCCCCCC
Q 021388          303 FLNKPLLTPVV  313 (313)
Q Consensus       303 ~~g~~~~~~v~  313 (313)
                      ++|+++.+.||
T Consensus       321 ~~g~~~~~~v~  331 (331)
T 1xdw_A          321 AETGDCPNKIK  331 (331)
T ss_dssp             HHHSCCTTBCC
T ss_pred             HcCCCCCCCCC
Confidence            99999999987

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.6e-65  Score=475.81  Aligned_cols=307  Identities=37%  Similarity=0.575  Sum_probs=275.3

Q ss_pred             eEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388            4 IGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      |+||+++++.+...+.|.+. +++........+++++.+.++++|+++++...++++++++++|+||||++.|+|+|++|
T Consensus         1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   80 (311)
T 2cuk_A            1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVD   80 (311)
T ss_dssp             CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTBC
T ss_pred             CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccccC
Confidence            57889888877777788877 66543322222445556678899999987667899999999999999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC--CcccccccCCCEEEEEcCChHHHHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      ++++.++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|...  ....+.++.|++|||||+|.||+.+|
T Consensus        81 ~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A  160 (311)
T 2cuk_A           81 LEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVA  160 (311)
T ss_dssp             HHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             HHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999631  11246789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHH
Q 021388          161 KRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      ++++++|++|++|||+.+... . ...++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++
T Consensus       161 ~~l~~~G~~V~~~d~~~~~~~-~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~a  238 (311)
T 2cuk_A          161 KRALAFGMRVVYHARTPKPLP-Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEA  238 (311)
T ss_dssp             HHHHHTTCEEEEECSSCCSSS-S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHH
T ss_pred             HHHHHCCCEEEEECCCCcccc-c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHH
Confidence            999999999999999876543 2 35689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeeEEEecCCCCCCCCC-CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          241 LVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       241 l~~al~~~~l~ga~lDV~~~Ep~~~-~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      |.++|+ |++.||++|||+.||++. +|||++||+++|||++++|.++..++.+.+++||.+|++|+++.+.|+
T Consensus       239 L~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  311 (311)
T 2cuk_A          239 LVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPVV  311 (311)
T ss_dssp             HHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCC
T ss_pred             HHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCccC
Confidence            999999 999999999999999765 589999999999999999999999999999999999999999988874

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=9.3e-66  Score=483.20  Aligned_cols=308  Identities=24%  Similarity=0.304  Sum_probs=267.4

Q ss_pred             eEEEEeCC--CChhHHHHHHhcC-c-EEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcCcC
Q 021388            4 IGVLMACP--MNTYLEQELERRF-N-LFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPK--LEIVSSFSVG   77 (313)
Q Consensus         4 ~~vl~~~~--~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G   77 (313)
                      |+|++...  ......+.+.+.+ + .+.+++....+ ++.+.++++|+++++...++++++++++|+  ||||++.|+|
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   80 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTP-ETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   80 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCT-TTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCCCcH-HHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcc
Confidence            46777543  3344556676655 2 23222222222 344567899999997777899999999988  9999999999


Q ss_pred             CCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHH
Q 021388           78 LDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGM  157 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~  157 (313)
                      +|++|++++.++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|.... ..+.++.|++|||||+|.||+
T Consensus        81 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~l~g~~vgIiG~G~IG~  159 (333)
T 1j4a_A           81 VDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP-TIGREVRDQVVGVVGTGHIGQ  159 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT-CCBCCGGGSEEEEECCSHHHH
T ss_pred             cccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCC-cccccCCCCEEEEEccCHHHH
Confidence            9999999999999999999999999999999999999999999999999999986322 246789999999999999999


Q ss_pred             HHHHHHHhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          158 AVAKRAEAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      .+|+++++||++|++||++.....  ......++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||++
T Consensus       160 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~  239 (333)
T 1j4a_A          160 VFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPL  239 (333)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGG
T ss_pred             HHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcc
Confidence            999999999999999999876421  122334899999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeeEEEecCCCCCCC--CC--------C----cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHH
Q 021388          236 VDERELVSALVEGRLGGAGLDVFENEPH--VP--------E----ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA  301 (313)
Q Consensus       236 vd~~al~~al~~~~l~ga~lDV~~~Ep~--~~--------~----~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~  301 (313)
                      +|+++|+++|++|++.||+||||++||.  ++        +    |||++|||++|||+|++|.++.+++.+.+++||.+
T Consensus       240 vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~  319 (333)
T 1j4a_A          240 VDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLE  319 (333)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999993  32        2    49999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCC
Q 021388          302 HFLNKPLLTPVV  313 (313)
Q Consensus       302 ~~~g~~~~~~v~  313 (313)
                      |++|+++.+.||
T Consensus       320 ~~~g~~~~~~v~  331 (333)
T 1j4a_A          320 LVEGKEAETPVK  331 (333)
T ss_dssp             HHTTCCCSSBCC
T ss_pred             HHcCCCCCcccc
Confidence            999999999886

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.2e-65  Score=473.13  Aligned_cols=301  Identities=35%  Similarity=0.574  Sum_probs=267.7

Q ss_pred             CCceEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCC
Q 021388            1 MESIGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |.|++|++++++.+...+.|++. +++. +.. ..+++++.+.++++|+++++..+++++++++++|+||||++.|+|+|
T Consensus         1 ~~~~~il~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   78 (307)
T 1wwk_A            1 MKRMKVLVAAPLHEKAIQVLKDAGLEVI-YEE-YPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLD   78 (307)
T ss_dssp             ---CEEEECSCCCHHHHHHHHHTTCEEE-ECS-SCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCT
T ss_pred             CCceEEEEeCCCCHHHHHHHHhCCeEEE-eCC-CCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            66789999998888777778763 4333 222 22344556678899999987666799999999999999999999999


Q ss_pred             cCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHH
Q 021388           80 KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAV  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~i  159 (313)
                      ++|++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.+.. ..+.++.|++|||||+|.||+.+
T Consensus        79 ~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~l~g~~vgIiG~G~IG~~~  157 (307)
T 1wwk_A           79 NIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-AMGIELEGKTIGIIGFGRIGYQV  157 (307)
T ss_dssp             TBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT-CCBCCCTTCEEEEECCSHHHHHH
T ss_pred             ccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC-cCCcccCCceEEEEccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997422 24678999999999999999999


Q ss_pred             HHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          160 AKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       160 A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      |+++++||++|++||+++...    .+.. ..++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||++
T Consensus       158 A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~  236 (307)
T 1wwk_A          158 AKIANALGMNILLYDPYPNEERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPV  236 (307)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGG
T ss_pred             HHHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcc
Confidence            999999999999999987642    2232 34799999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeeEEEecCCCCCCCCC-CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 021388          236 VDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLN  305 (313)
Q Consensus       236 vd~~al~~al~~~~l~ga~lDV~~~Ep~~~-~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g  305 (313)
                      +|+++|.++|++|++.||++|||+.||++. +|||++||+++|||++++|.++..++.+.+++||.+|++|
T Consensus       237 vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          237 VDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             BCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999854 5999999999999999999999999999999999999986

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.4e-66  Score=485.26  Aligned_cols=307  Identities=22%  Similarity=0.349  Sum_probs=266.2

Q ss_pred             EEEEeC--CCChhHHHHHHhcCc-EEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcCcCCC
Q 021388            5 GVLMAC--PMNTYLEQELERRFN-LFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPK--LEIVSSFSVGLD   79 (313)
Q Consensus         5 ~vl~~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d   79 (313)
                      ||++.+  +......+.+.+.+. .+.+++....+ ++.+.++++|++++++..++++++++++|+  ||||++.|+|+|
T Consensus         2 kil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d   80 (333)
T 1dxy_A            2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDE-NTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD   80 (333)
T ss_dssp             EEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCT-TGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred             EEEEEeccccCHHHHHHHHHhCCeEEEEcCCCChH-HHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccC
Confidence            677754  444455566655433 22222222222 344567899999997777899999999988  999999999999


Q ss_pred             cCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCC-CCcccccccCCCEEEEEcCChHHHH
Q 021388           80 KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK-GDYKLTTKFTGKTVGIIGLGRIGMA  158 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~-~~~~~~~~l~g~~igiiG~G~iG~~  158 (313)
                      ++|++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.. .. ..+.++.|++|||||+|.||+.
T Consensus        81 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~l~g~~vgIiG~G~IG~~  159 (333)
T 1dxy_A           81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQV  159 (333)
T ss_dssp             TBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC-CCCCCGGGSEEEEECCSHHHHH
T ss_pred             ccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccC-CCccCCCCCEEEEECcCHHHHH
Confidence            999999999999999999999999999999999999999999999999999852 22 2467899999999999999999


Q ss_pred             HHHHHHhCCCCEEEecCCCCCcc-ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          159 VAKRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       159 iA~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      +|+++++|||+|++||++..... ......++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|
T Consensus       160 ~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  239 (333)
T 1dxy_A          160 AIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID  239 (333)
T ss_dssp             HHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred             HHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC
Confidence            99999999999999999876431 11123489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeeEEEecCCCCCCC-----------CC---CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          238 ERELVSALVEGRLGGAGLDVFENEPH-----------VP---EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lDV~~~Ep~-----------~~---~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      +++|+++|++|++.||+||||++||.           +.   +|||++|||++|||+|++|.++..++.+.+++||.+|+
T Consensus       240 ~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~  319 (333)
T 1dxy_A          240 TQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFL  319 (333)
T ss_dssp             HHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999993           12   37999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCC
Q 021388          304 LNKPLLTPVV  313 (313)
Q Consensus       304 ~g~~~~~~v~  313 (313)
                      +|+++.+.||
T Consensus       320 ~g~~~~~~v~  329 (333)
T 1dxy_A          320 TKGETSTEVT  329 (333)
T ss_dssp             HHSCCTTEEC
T ss_pred             cCCCCCceeC
Confidence            9999988775

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=2e-65  Score=476.72  Aligned_cols=296  Identities=23%  Similarity=0.333  Sum_probs=259.3

Q ss_pred             ceEEEEeCCCC--hhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            3 SIGVLMACPMN--TYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         3 ~~~vl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +|+||+..+..  +.+.+.+++.++.+.+...+.      ...+++|+++++.   .+++++++ |+||||++.|+|+|+
T Consensus         3 ~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~------~~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~   72 (315)
T 3pp8_A            3 AMEIIFYHPTFNAAWWVNALEKALPHARVREWKV------GDNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDA   72 (315)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT------TCCSCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHH
T ss_pred             ceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC------CCccCcEEEEECC---CCHHHhCC-CCceEEEECCEeccc
Confidence            47888877644  456778888875332211111      1346899999964   47999999 999999999999999


Q ss_pred             C-C-hhh---hhhcCcEEEcCCCCC-hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCCh
Q 021388           81 V-D-MVK---CKEKGVRVTNTPDVL-TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR  154 (313)
Q Consensus        81 i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~  154 (313)
                      + | +++   +.++||.|+|++++. +.+||||+++++|++.|++..+++.+++|.|.+.   .+.++.|++|||||+|.
T Consensus        73 i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~~l~g~tvGIiG~G~  149 (315)
T 3pp8_A           73 ILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL---PEYTREEFSVGIMGAGV  149 (315)
T ss_dssp             HHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CCCCSTTCCEEEECCSH
T ss_pred             ccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC---CCCCcCCCEEEEEeeCH
Confidence            9 7 876   678999999998764 8999999999999999999999999999999753   36789999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCcccccc---CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~---~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ||+.+|+++++|||+|++|||+++...+...   ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|
T Consensus       150 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  229 (315)
T 3pp8_A          150 LGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA  229 (315)
T ss_dssp             HHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECS
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECC
Confidence            9999999999999999999998775443322   2579999999999999999999999999999999999999999999


Q ss_pred             CCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021388          232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLT  310 (313)
Q Consensus       232 rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  310 (313)
                      ||+++|+++|+++|++|++.||+||||++||++.+ |||++|||++|||+|++|.+  +++.+.+++||.+|++|+++.+
T Consensus       230 RG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~~~~  307 (315)
T 3pp8_A          230 RGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPVTG  307 (315)
T ss_dssp             CGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999998764 99999999999999999985  6899999999999999999999


Q ss_pred             CCC
Q 021388          311 PVV  313 (313)
Q Consensus       311 ~v~  313 (313)
                      .||
T Consensus       308 ~V~  310 (315)
T 3pp8_A          308 QVD  310 (315)
T ss_dssp             BCC
T ss_pred             eEC
Confidence            986

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.2e-64  Score=472.00  Aligned_cols=302  Identities=25%  Similarity=0.417  Sum_probs=272.7

Q ss_pred             CceEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            2 ESIGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      .+++|++++++.+...+.|.+. +++. +.. ..+++++.+.++++|++++++..++++++++++|+||||++.|+|+|+
T Consensus         4 ~~mkil~~~~~~~~~~~~l~~~~~~v~-~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   81 (313)
T 2ekl_A            4 YTVKALITDPIDEILIKTLREKGIQVD-YMP-EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDN   81 (313)
T ss_dssp             CCCEEEECSCCCHHHHHHHHHTTCEEE-ECT-TCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTT
T ss_pred             cceEEEEECCCCHHHHHHHHhCCcEEE-eCC-CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCc
Confidence            3678999998888877888775 4432 222 223445566788999999876678999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      +|++++.++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|..   ..+.++.|++|||||+|.||+.+|
T Consensus        82 id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~l~g~~vgIIG~G~IG~~~A  158 (313)
T 2ekl_A           82 IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVG  158 (313)
T ss_dssp             BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC---CCCCCCTTCEEEEESCSHHHHHHH
T ss_pred             cCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC---CCCCCCCCCEEEEEeeCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999962   246789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          161 KRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      ++++++|++|++||++++..    .+.. ..++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++
T Consensus       159 ~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~v  237 (313)
T 2ekl_A          159 IIANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAV  237 (313)
T ss_dssp             HHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGB
T ss_pred             HHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCccc
Confidence            99999999999999987642    2333 248999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeeEEEecCCCCCCCCCC---cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021388          237 DERELVSALVEGRLGGAGLDVFENEPHVPE---ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLL  309 (313)
Q Consensus       237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~---~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  309 (313)
                      |+++|.++|++|++.||++|||+.||++.+   |||++|||++|||+|++|.++.+++.+.+++||.+|++|+++.
T Consensus       238 d~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l~  313 (313)
T 2ekl_A          238 NGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI  313 (313)
T ss_dssp             CHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999887   8999999999999999999999999999999999999999874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.6e-64  Score=469.26  Aligned_cols=307  Identities=28%  Similarity=0.500  Sum_probs=273.2

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeec-CCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCC-ccEEEEcCcCCCcC
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWT-VSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPK-LEIVSSFSVGLDKV   81 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~i   81 (313)
                      ++|++++++.+...+.|.+.+++..... .+.+++++.+.++++|+++++...++++++++++|+ ||||++.|+|+|++
T Consensus         2 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~i   81 (320)
T 1gdh_A            2 KKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHI   81 (320)
T ss_dssp             CEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTB
T ss_pred             cEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcccccc
Confidence            5788988888888888887776543322 123445566778899999998767899999999999 99999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC--cccccccCCCEEEEEcCChHHHHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD--YKLTTKFTGKTVGIIGLGRIGMAV  159 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~--~~~~~~l~g~~igiiG~G~iG~~i  159 (313)
                      |++++.++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|....  ...+.++.|++|||||+|.||+.+
T Consensus        82 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~  161 (320)
T 1gdh_A           82 DLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL  161 (320)
T ss_dssp             CHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred             cHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHH
Confidence            999999999999999999999999999999999999999999999999996311  124678999999999999999999


Q ss_pred             HHHHHhCCCCEEEecC-CCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          160 AKRAEAFSCPINYYSR-TEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       160 A~~l~~~G~~V~~~~~-~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      |+++++||++|++||+ ++...    .+.....++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+
T Consensus       162 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             HHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCc
Confidence            9999999999999999 77542    233334489999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021388          235 HVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTP  311 (313)
Q Consensus       235 ~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  311 (313)
                      ++|+++|.++|++|++.||++|||+.||...+|||++||+++|||++++|.++..++.+.+ +||.+|++|+++.+.
T Consensus       242 ~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~~  317 (320)
T 1gdh_A          242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMSY  317 (320)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCTT
T ss_pred             ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCccc
Confidence            9999999999999999999999999999444699999999999999999999999999999 999999999987653

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=2.6e-65  Score=485.13  Aligned_cols=308  Identities=22%  Similarity=0.315  Sum_probs=267.7

Q ss_pred             ceEEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCC--CCCCHHHHhhCCCccEEEEcCcCCC
Q 021388            3 SIGVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNAT--AGADAELIDALPKLEIVSSFSVGLD   79 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      +|+||+.+...+.+.+.|++. +++..+.......+++.+.++++|+++++..  .++++++++++|+||||++.++|+|
T Consensus        17 ~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   96 (364)
T 2j6i_A           17 EEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSD   96 (364)
T ss_dssp             CTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCT
T ss_pred             CceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            355666776666677777765 4544433222233445667889999998542  3589999999999999999999999


Q ss_pred             cCChhhhhhc--CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-ccccccCCCEEEEEcCChHH
Q 021388           80 KVDMVKCKEK--GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIG  156 (313)
Q Consensus        80 ~id~~~~~~~--gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~igiiG~G~iG  156 (313)
                      |+|++++.++  ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..... ..+.++.|++|||||+|+||
T Consensus        97 ~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG  176 (364)
T 2j6i_A           97 HIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIG  176 (364)
T ss_dssp             TBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHH
T ss_pred             cccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHH
Confidence            9999999999  99999999999999999999999999999999999999999973211 13678999999999999999


Q ss_pred             HHHHHHHHhCCCC-EEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEc
Q 021388          157 MAVAKRAEAFSCP-INYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       157 ~~iA~~l~~~G~~-V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      +.+|+++++|||+ |++||++....     .+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+
T Consensus       177 ~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  256 (364)
T 2j6i_A          177 YRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT  256 (364)
T ss_dssp             HHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEEC
Confidence            9999999999998 99999876432     23334458999999999999999999999999999999999999999999


Q ss_pred             CCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCC--C---ceEEccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021388          231 GRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGL--E---NVVLMPHVGSGTVETRKTMADLVLGNLEAHFL  304 (313)
Q Consensus       231 ~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~--p---nv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~  304 (313)
                      |||+++|+++|+++|++|++.||+||||++||++.+ |||.+  |   ||++|||+|++|.++..++...+++||.+|++
T Consensus       257 arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~  336 (364)
T 2j6i_A          257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFT  336 (364)
T ss_dssp             SCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999998764 89999  9   99999999999999999999999999999999


Q ss_pred             CCCCCC
Q 021388          305 NKPLLT  310 (313)
Q Consensus       305 g~~~~~  310 (313)
                      |+++..
T Consensus       337 g~~~~~  342 (364)
T 2j6i_A          337 GKFDYR  342 (364)
T ss_dssp             TCCCCC
T ss_pred             CCCCCC
Confidence            994433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1e-64  Score=483.61  Aligned_cols=295  Identities=23%  Similarity=0.376  Sum_probs=260.6

Q ss_pred             HHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeC--CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEE
Q 021388           18 QELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNA--TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT   94 (313)
Q Consensus        18 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~   94 (313)
                      +.|++. +++....+.+..++++.+.+.++|+++++.  ..++++++++++|+||||++.++|+||||++++.++||.|+
T Consensus        61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~  140 (393)
T 2nac_A           61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVA  140 (393)
T ss_dssp             HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEE
T ss_pred             HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEE
Confidence            456554 344433333233444556788999999853  35799999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC-cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe
Q 021388           95 NTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY  173 (313)
Q Consensus        95 n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~  173 (313)
                      |+|++++.+||||++++||++.|++..+++.+++|.|.... ...+.++.|++|||||+|.||+.+|+++++|||+|++|
T Consensus       141 n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~  220 (393)
T 2nac_A          141 EVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT  220 (393)
T ss_dssp             ECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEE
T ss_pred             eCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEE
Confidence            99999999999999999999999999999999999997321 11356899999999999999999999999999999999


Q ss_pred             cCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          174 SRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       174 ~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      |++.....     +.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.++|++|
T Consensus       221 d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  300 (393)
T 2nac_A          221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG  300 (393)
T ss_dssp             CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             cCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence            99864321     3333468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEecCCCCCCCCC-CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388          249 RLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       249 ~l~ga~lDV~~~Ep~~~-~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  312 (313)
                      ++.||++|||++||++. +|||++|||++|||+|+.|.++..++...+++||.+|++|+++.+.|
T Consensus       301 ~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~  365 (393)
T 2nac_A          301 RLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEY  365 (393)
T ss_dssp             SEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGG
T ss_pred             CeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCccee
Confidence            99999999999999875 49999999999999999999999999999999999999999988765

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.3e-63  Score=470.29  Aligned_cols=312  Identities=24%  Similarity=0.317  Sum_probs=269.6

Q ss_pred             CCceEEEEeCCCC-hhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCC
Q 021388            1 MESIGVLMACPMN-TYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |+||+|++.+... +..++.++..+++..+ +....+++.++...++|+++++...++++++++++|+||||++.++|+|
T Consensus        19 ~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   97 (347)
T 1mx3_A           19 SHMPLVALLDGRDCTVEMPILKDVATVAFC-DAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   97 (347)
T ss_dssp             --CCEEEESSCSCCTTTHHHHTTTCEEEEC-CCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCCCEEEEEcCCcchhhHHHhhccceEEec-CCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccccC
Confidence            4689999987532 2235667666655544 3334444444434678888887777899999999999999999999999


Q ss_pred             cCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-----cc-ccccCCCEEEEEcCC
Q 021388           80 KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-----KL-TTKFTGKTVGIIGLG  153 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~-~~~l~g~~igiiG~G  153 (313)
                      ++|++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.....     .. +.++.|++|||||+|
T Consensus        98 ~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G  177 (347)
T 1mx3_A           98 NIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLG  177 (347)
T ss_dssp             TBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCS
T ss_pred             cccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeEC
Confidence            999999999999999999999999999999999999999999999999999963210     01 258999999999999


Q ss_pred             hHHHHHHHHHHhCCCCEEEecCCCCCcc----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEE
Q 021388          154 RIGMAVAKRAEAFSCPINYYSRTEKPNL----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN  229 (313)
Q Consensus       154 ~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn  229 (313)
                      .||+.+|+++++||++|++||++.....    +.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||
T Consensus       178 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  257 (347)
T 1mx3_A          178 RVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN  257 (347)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEE
Confidence            9999999999999999999998765321    233345899999999999999999999999999999999999999999


Q ss_pred             cCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC--CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP--EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       230 ~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~--~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      +|||+++|+++|.++|++|++.||++|||+.||++.  +|||.+||+++|||+|++|.++..++.+.+++||.+|++|++
T Consensus       258 ~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  337 (347)
T 1mx3_A          258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRI  337 (347)
T ss_dssp             CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999863  589999999999999999999999999999999999999987


Q ss_pred             CC---CCCC
Q 021388          308 LL---TPVV  313 (313)
Q Consensus       308 ~~---~~v~  313 (313)
                      +.   |.||
T Consensus       338 ~~~l~~~v~  346 (347)
T 1mx3_A          338 PDSLKNCVN  346 (347)
T ss_dssp             TTTCSSBCC
T ss_pred             CcccCCCCC
Confidence            64   6665

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=5.4e-63  Score=467.02  Aligned_cols=311  Identities=27%  Similarity=0.425  Sum_probs=271.8

Q ss_pred             CCceEEEEeCC-CC--hhHHHHHHhcCcEEEeecCCChHHHHHhccC-----CceEEEEe------CCCCCCHHHHhhCC
Q 021388            1 MESIGVLMACP-MN--TYLEQELERRFNLFKFWTVSDKTQFLKAQQN-----NIRAVVGN------ATAGADAELIDALP   66 (313)
Q Consensus         1 m~~~~vl~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~------~~~~~~~~~l~~~~   66 (313)
                      |+||+||++++ +.  +...+.|.+.+++..+. ....+++. +.++     ++|+++.+      ...++++++++++|
T Consensus         1 m~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~   78 (348)
T 2w2k_A            1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPAN-LTTHDGFK-QALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP   78 (348)
T ss_dssp             -CCCEEEECSSCCSSCHHHHHHHHHHSEEEECC-CCCHHHHH-HHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSC
T ss_pred             CCCcEEEEECCccccChHHHHHHHhcceEEecC-CCCHHHHH-HHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcc
Confidence            78899999887 43  45667787777765443 23344443 4443     88998874      24579999999998


Q ss_pred             -CccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCC---CCCCC---cccc
Q 021388           67 -KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK---WKKGD---YKLT  139 (313)
Q Consensus        67 -~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~---w~~~~---~~~~  139 (313)
                       +||||++.++|+|++|++++.++||.|+|+||+++.+||||++++||+++|++.++++.+++|.   |.+..   ...+
T Consensus        79 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             cCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence             6999999999999999999999999999999999999999999999999999999999999999   94211   1246


Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      .++.|++|||||+|.||+.+|++++ ++|++|++||++.....     +.....++++++++||+|++|+|.+++|++++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li  238 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI  238 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh
Confidence            7899999999999999999999999 99999999999875321     33334589999999999999999999999999


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHH
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD  293 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~  293 (313)
                      +++.++.||+|++|||++||+++|+++|.++|++|++.||++|||++||.+..+|+++|||++|||+|+.|.++..++.+
T Consensus       239 ~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~  318 (348)
T 2w2k_A          239 DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFER  318 (348)
T ss_dssp             CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHHHH
T ss_pred             hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999995445899999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCC
Q 021388          294 LVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       294 ~~~~nl~~~~~g~~~~~~v~  313 (313)
                      .+++||.+|++|+++.++||
T Consensus       319 ~~~~ni~~~~~g~~~~~~v~  338 (348)
T 2w2k_A          319 LTMTNIDRFLLQGKPLLTPA  338 (348)
T ss_dssp             HHHHHHHHHHHTCCCCSSBC
T ss_pred             HHHHHHHHHHcCCCCcceec
Confidence            99999999999999988886

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-62  Score=462.09  Aligned_cols=307  Identities=30%  Similarity=0.501  Sum_probs=275.4

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      |++||+++++.+...+.|.+.+++..+ . ..+++++.+.++++|++++++..++++++++++|+||||++.++|+|++|
T Consensus         2 ~~~il~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   79 (333)
T 2d0i_A            2 RPKVGVLLKMKREALEELKKYADVEII-L-YPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNID   79 (333)
T ss_dssp             CSEEEECSCCCHHHHHHHHTTSEEEEC-C-SCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTBC
T ss_pred             CcEEEEECCCCHHHHHHHHhcCCEEEe-C-CCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCccccccc
Confidence            578999988888888888887765443 2 22344455668899999987777899999999999999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC-cccc----cccCCCEEEEEcCChHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD-YKLT----TKFTGKTVGIIGLGRIGM  157 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~----~~l~g~~igiiG~G~iG~  157 (313)
                      ++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.+.. ...+    .++.|++|||||+|.||+
T Consensus        80 ~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~  159 (333)
T 2d0i_A           80 LEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGK  159 (333)
T ss_dssp             HHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHH
T ss_pred             HHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHH
Confidence            99999999999999999999999999999999999999999999999996311 1134    689999999999999999


Q ss_pred             HHHHHHHhCCCCEEEecCCCCCcc----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          158 AVAKRAEAFSCPINYYSRTEKPNL----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .+|++++++|++|++||++++...    +.. ..++++++++||+|++|+|.+++|+++++++.++.||+| ++||+|||
T Consensus       160 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg  237 (333)
T 2d0i_A          160 AIARRLIPFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRG  237 (333)
T ss_dssp             HHHHHHGGGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCG
T ss_pred             HHHHHHHHCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCC
Confidence            999999999999999999876421    222 248999999999999999999999999999999999999 99999999


Q ss_pred             ccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCC-ceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388          234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLE-NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       234 ~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~p-nv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  312 (313)
                      .++|+++|.++|+++++.||++|||++||++.+|||++| ||++|||+|+.|.++..++.+.+++|+.+|++|+++.+.|
T Consensus       238 ~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v  317 (333)
T 2d0i_A          238 ALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLV  317 (333)
T ss_dssp             GGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBS
T ss_pred             cccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Confidence            999999999999999999999999999998766999999 9999999999999999999999999999999999998888


Q ss_pred             C
Q 021388          313 V  313 (313)
Q Consensus       313 ~  313 (313)
                      |
T Consensus       318 ~  318 (333)
T 2d0i_A          318 N  318 (333)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=6.5e-62  Score=456.74  Aligned_cols=312  Identities=32%  Similarity=0.502  Sum_probs=276.5

Q ss_pred             CCceEEEEeCCCChhHHHHHHhc--CcEEEeec-CCChHHHHHhccCCceEEEEeCCCCCCHHHHhhC-CCccEEEEcCc
Q 021388            1 MESIGVLMACPMNTYLEQELERR--FNLFKFWT-VSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL-PKLEIVSSFSV   76 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~   76 (313)
                      |.|++||+++++.+...+.|++.  +++..+.. .+.+++++.+.++++|++++++..++++++++++ |+||||++.++
T Consensus         6 ~~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~   85 (330)
T 2gcg_A            6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSV   85 (330)
T ss_dssp             -CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCc
Confidence            34689999988888888888876  55443321 1223455566778999999877778999999999 99999999999


Q ss_pred             CCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC--CcccccccCCCEEEEEcCCh
Q 021388           77 GLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLGR  154 (313)
Q Consensus        77 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~igiiG~G~  154 (313)
                      |+|++|++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|...  ....+.++.|++|||||+|.
T Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~  165 (330)
T 2gcg_A           86 GIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGR  165 (330)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSH
T ss_pred             ccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999999999999999999631  11246789999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEE
Q 021388          155 IGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN  229 (313)
Q Consensus       155 iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn  229 (313)
                      ||+.+|++++++|++|++||++....     .+.... ++++++++||+|++|+|.+++++++++++.++.||+|+++||
T Consensus       166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn  244 (330)
T 2gcg_A          166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN  244 (330)
T ss_dssp             HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEE
Confidence            99999999999999999999876432     122233 899999999999999999999999999999999999999999


Q ss_pred             cCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 021388          230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL  308 (313)
Q Consensus       230 ~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  308 (313)
                      ++||+++|+++|.++|++|++.||++|||++||++.+ |||++|||++|||+|+.|.++..++...+++|+.+|++|+++
T Consensus       245 ~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~  324 (330)
T 2gcg_A          245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM  324 (330)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999997664 899999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 021388          309 LTPVV  313 (313)
Q Consensus       309 ~~~v~  313 (313)
                      .+.||
T Consensus       325 ~~~v~  329 (330)
T 2gcg_A          325 PSELK  329 (330)
T ss_dssp             TTEEC
T ss_pred             CCCCC
Confidence            98886

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.7e-62  Score=455.15  Aligned_cols=292  Identities=23%  Similarity=0.346  Sum_probs=262.0

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |+||+++++.+...+.|.+....+  .         .+.++++|+++++.   .+.++++++|+||||++.|+|+|++|+
T Consensus         1 m~il~~~~~~~~~~~~l~~~~~~v--~---------~~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~   66 (303)
T 1qp8_A            1 MELYVNFELPPEAEEELRKYFKIV--R---------GGDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPW   66 (303)
T ss_dssp             CEEECCSCCCHHHHHHHHTTCEEE--C---------SSCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEccCCCHHHHHHHHhcCCcc--c---------hhhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccH
Confidence            378898888888888887652111  1         13467899998854   457999999999999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      +++ ++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.+..  ...++.|+++||||+|.||+.+|+++
T Consensus        67 ~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~~l~g~~vgIIG~G~IG~~~A~~l  143 (303)
T 1qp8_A           67 ESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV--EIPLIQGEKVAVLGLGEIGTRVGKIL  143 (303)
T ss_dssp             TTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS--CCCCCTTCEEEEESCSTHHHHHHHHH
T ss_pred             HHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC--CCCCCCCCEEEEEccCHHHHHHHHHH
Confidence            885 799999999999999999999999999999999999999999997431  23479999999999999999999999


Q ss_pred             HhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHH
Q 021388          164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVS  243 (313)
Q Consensus       164 ~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~  243 (313)
                      ++||++|++|||++. ..+.....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.+
T Consensus       144 ~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~  222 (303)
T 1qp8_A          144 AALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLR  222 (303)
T ss_dssp             HHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH
T ss_pred             HHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHH
Confidence            999999999999876 2233345689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeeEEEecCC-CCCCCCC-CcccCCCceEEccCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          244 ALVEGRLGGAGLDVF-ENEPHVP-EELFGLENVVLMPHVGSG--TVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       244 al~~~~l~ga~lDV~-~~Ep~~~-~~L~~~pnv~lTPH~a~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      +|++|++.||++||| ++||++. +|||++||+++|||+||.  |.++++++.+.+++||.+|++|+++.+.||
T Consensus       223 aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          223 ILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             HHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            999999999999999 8899875 489999999999999998  999999999999999999999999999886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=5e-62  Score=458.21  Aligned_cols=310  Identities=42%  Similarity=0.631  Sum_probs=275.7

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeecC-CChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWTV-SDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +++||+++++.+...+.|.+.+++..+... +.+++++.+.++++|+++++...++++++++++|+||||++.|+|+|++
T Consensus         2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   81 (334)
T 2dbq_A            2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNI   81 (334)
T ss_dssp             CCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            457888888888888888877765543321 2244556677889999999777789999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCC----CC--CcccccccCCCEEEEEcCChH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK----KG--DYKLTTKFTGKTVGIIGLGRI  155 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~----~~--~~~~~~~l~g~~igiiG~G~i  155 (313)
                      |++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.    ..  ....+.++.|++|||||+|.|
T Consensus        82 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~i  161 (334)
T 2dbq_A           82 DIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRI  161 (334)
T ss_dssp             CHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHH
T ss_pred             cHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHH
Confidence            999999999999999999999999999999999999999999999999995    11  112367899999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          156 GMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       156 G~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      |+.+|++++++|++|++||++.+..    .+.. ..++++++++||+|++|+|.+++++++++++.++.||+|++|||+|
T Consensus       162 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          162 GQAIAKRAKGFNMRILYYSRTRKEEVERELNAE-FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcc-cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            9999999999999999999987641    1222 3589999999999999999999999999999999999999999999


Q ss_pred             CCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021388          232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTP  311 (313)
Q Consensus       232 rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  311 (313)
                      ||.++|+++|.++|++|++.||++|||++||...+|||++|||++|||+|+.|.++..++.+.+++||.+|++|+++.+.
T Consensus       241 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  320 (334)
T 2dbq_A          241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPTL  320 (334)
T ss_dssp             CGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            99999999999999999999999999999993345899999999999999999999999999999999999999999988


Q ss_pred             CC
Q 021388          312 VV  313 (313)
Q Consensus       312 v~  313 (313)
                      ||
T Consensus       321 v~  322 (334)
T 2dbq_A          321 VN  322 (334)
T ss_dssp             SC
T ss_pred             cC
Confidence            86

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.7e-61  Score=455.33  Aligned_cols=279  Identities=22%  Similarity=0.307  Sum_probs=245.2

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      +||||+.+.+ +...+.+++..++..+...+.+.    +.++++|++++++.+++++++++ .++||||++.|+|+||||
T Consensus         3 mmkIl~~~~~-p~~~~~~~~~~~v~~~~~~~~~~----~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~iD   76 (381)
T 3oet_A            3 AMKILVDENM-PYARELFSRLGEVKAVPGRPIPV----EELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHVD   76 (381)
T ss_dssp             CCEEEEETTS-TTHHHHHTTSSEEEEECC---CH----HHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTBC
T ss_pred             ceEEEECCCC-cHHHHHHhhCCcEEEeCCCCCCH----HHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccccC
Confidence            4789998765 55666666666554432221222    33689999999877889999999 567999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHH
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKR  162 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~  162 (313)
                      ++++.++||.|+|+||+++.+||||+++++|++.|+.                   +.++.|++|||||+|+||+.+|++
T Consensus        77 ~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-------------------g~~l~gktvGIIGlG~IG~~vA~~  137 (381)
T 3oet_A           77 EAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-------------------GFSLRDRTIGIVGVGNVGSRLQTR  137 (381)
T ss_dssp             HHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-------------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-------------------CCccCCCEEEEEeECHHHHHHHHH
Confidence            9999999999999999999999999999999999863                   346999999999999999999999


Q ss_pred             HHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChh----hhcccCHHHHhccCCCcEEEEcCCCccccH
Q 021388          163 AEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       163 l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                      +++|||+|++||++...........++++++++||+|++|+|++++    |+++++++.|+.||+|+++||+|||++||+
T Consensus       138 l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde  217 (381)
T 3oet_A          138 LEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDN  217 (381)
T ss_dssp             HHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             HHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence            9999999999998644332233457899999999999999999999    999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          239 RELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       239 ~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      ++|+++|++|++.||+||||++||++.++||+++ +++|||+||+|.++..++..++++||.+|+.+.+
T Consensus       218 ~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          218 AALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             HHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999888899875 8999999999999999999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=3.6e-60  Score=470.22  Aligned_cols=309  Identities=31%  Similarity=0.451  Sum_probs=277.2

Q ss_pred             CCceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |+||+||+++++.+...+.|++.+++..+ +. .+.+++.+.++++|++++++.+++++++++++|+||||++.|+|+||
T Consensus         2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~~-~~-~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   79 (529)
T 1ygy_A            2 VSLPVVLIADKLAPSTVAALGDQVEVRWV-DG-PDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDN   79 (529)
T ss_dssp             -CCCEEEECSSCCGGGGTTSCSSSEEEEC-CT-TSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTT
T ss_pred             CCCcEEEEeCCCCHHHHHHHhcCceEEEc-CC-CCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCc
Confidence            67899999999888777777666554433 22 23444566788999999987788999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA  160 (313)
                      +|++++.++||.|+|+|++++.+||||+++++|++.|+++++++.+++|.|.+..+ .+.++.|+++||||+|.||+++|
T Consensus        80 id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~-~~~~l~g~~vgIIG~G~IG~~vA  158 (529)
T 1ygy_A           80 VDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVA  158 (529)
T ss_dssp             BCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGC-CBCCCTTCEEEEECCSHHHHHHH
T ss_pred             cCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCc-CccccCCCEEEEEeeCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999975433 46789999999999999999999


Q ss_pred             HHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388          161 KRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      ++|+++|++|++||++....    .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+++||++||+++
T Consensus       159 ~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv  237 (529)
T 1ygy_A          159 QRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV  237 (529)
T ss_dssp             HHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSB
T ss_pred             HHHHhCCCEEEEECCCCChhHHHhcCcEE-cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchh
Confidence            99999999999999976421    13333 37999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388          237 DERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV  313 (313)
Q Consensus       237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  313 (313)
                      |+++|.++|++|++.||++|||+.||...+|||++||+++|||+++.|.++.+++...+++|+.+|+.|+++.+.||
T Consensus       238 ~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~  314 (529)
T 1ygy_A          238 DEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  314 (529)
T ss_dssp             CHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             hHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999999877799999999999999999999999999999999999999998777664

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.6e-60  Score=438.64  Aligned_cols=279  Identities=24%  Similarity=0.335  Sum_probs=244.0

Q ss_pred             EEEEeCCCChhHHHHHHhc---CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            5 GVLMACPMNTYLEQELERR---FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +|.+..++.....+...+.   ++...+           +.++++|+++++ ...+      ++|+||||++.|+|+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~ad~li~~-~~~~------~~~~Lk~I~~~~~G~d~i   63 (290)
T 3gvx_A            2 DVYVNFPADGHVREIAKTVLDGFDLHWY-----------PDYYDAEAQVIK-DRYV------LGKRTKMIQAISAGVDHI   63 (290)
T ss_dssp             CEEECSCCCHHHHHHHHHHTTTSCEEET-----------TSCCCCSEEEES-SCCC------CCSSCCEEEECSSCCTTS
T ss_pred             ceEEecCCcchHHHHHHHHhcccccccC-----------cchhhhhhhhhh-hhhh------hhhhhHHHHHHhcCCcee
Confidence            5677777776555444332   332221           446899999983 2332      789999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHH
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK  161 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~  161 (313)
                      |++++.+++|.++| +|.++.+||||+++++|++.|++..+++.+++|.|.+..   ..++.|++|||||+|.||+.+|+
T Consensus        64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~l~g~tvGIIGlG~IG~~vA~  139 (290)
T 3gvx_A           64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP---TTLLYGKALGILGYGGIGRRVAH  139 (290)
T ss_dssp             CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---CCCCTTCEEEEECCSHHHHHHHH
T ss_pred             ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC---ceeeecchheeeccCchhHHHHH
Confidence            99999887766555 588899999999999999999999999999999998542   36799999999999999999999


Q ss_pred             HHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHH
Q 021388          162 RAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       162 ~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al  241 (313)
                      ++++|||+|++|||++..........++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|
T Consensus       140 ~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  219 (290)
T 3gvx_A          140 LAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDM  219 (290)
T ss_dssp             HHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHH
T ss_pred             HHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcch
Confidence            99999999999999887655445566899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388          242 VSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVG-SGTVETRKTMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       242 ~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a-~~t~~~~~~~~~~~~~nl~~~~~g~~  307 (313)
                      +++|++|++.||++|||++||+  +|||++|||++|||+| ++|.++.+++.+.+++||.+|++|+-
T Consensus       220 ~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          220 IGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             HHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             hhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999999999999998  8999999999999999 89999999999999999999999874

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.2e-58  Score=437.97  Aligned_cols=279  Identities=18%  Similarity=0.273  Sum_probs=243.5

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |||++.+.+ +...+.+.+..++..+...+.    ..+.++++|++++++.+++++++++ +|+||||++.++|+||+|+
T Consensus         1 mkil~~~~~-~~~~~~~~~~~~v~~~~~~~~----~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~   74 (380)
T 2o4c_A            1 MRILADENI-PVVDAFFADQGSIRRLPGRAI----DRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDL   74 (380)
T ss_dssp             CEEEEETTC-TTHHHHHGGGSEEEEECGGGC----STTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCH
T ss_pred             CEEEEecCc-hHHHHHHHhCCcEEEecCCcC----ChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhH
Confidence            478887665 444566665555443321111    1234689999999877889999999 8999999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      +++.++||.|+|+||+++.+||||+++++|++.|+.                   +.++.|++|||||+|+||+.+|++|
T Consensus        75 ~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-------------------~~~l~g~tvGIIGlG~IG~~vA~~l  135 (380)
T 2o4c_A           75 DYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-------------------GADLAERTYGVVGAGQVGGRLVEVL  135 (380)
T ss_dssp             HHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-------------------TCCGGGCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-------------------hcccCCCEEEEEeCCHHHHHHHHHH
Confidence            999999999999999999999999999999999873                   2469999999999999999999999


Q ss_pred             HhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChh----hhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       164 ~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      ++||++|++||++...........++++++++||+|++|+|++++    |+++++++.++.||+|+++||+|||+++|++
T Consensus       136 ~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~  215 (380)
T 2o4c_A          136 RGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQ  215 (380)
T ss_dssp             HHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHH
T ss_pred             HHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHH
Confidence            999999999998654221112356899999999999999999999    9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 021388          240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL  308 (313)
Q Consensus       240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  308 (313)
                      +|+++|++|++.||+||||++||+++++|++ +||++|||+||+|.++..++...+++|+.+|++|++.
T Consensus       216 aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~  283 (380)
T 2o4c_A          216 ALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAER  283 (380)
T ss_dssp             HHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999987778887 5999999999999999999999999999999999863

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=5.5e-37  Score=299.02  Aligned_cols=222  Identities=15%  Similarity=0.179  Sum_probs=188.7

Q ss_pred             CCccEEE-EcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCC
Q 021388           66 PKLEIVS-SFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTG  144 (313)
Q Consensus        66 ~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  144 (313)
                      |+++.|+ ..++|+|++  +++.++||.++|++++++ +|||+.       +|++....+....| |.+   ..+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~---~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR---ATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH---HHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh---ccccccCC
Confidence            7899998 889999988  789999999999999999 999953       46665555555555 753   13567999


Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      +++||||+|.||+.+|+++++||++|++||+++...     .++. ..++++++++||+|++|+    .|+++|+++.|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~-~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~  352 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYR-VVTMEYAADKADIFVTAT----GNYHVINHDHMK  352 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECS----SSSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCE-eCCHHHHHhcCCEEEECC----CcccccCHHHHh
Confidence            999999999999999999999999999999987532     1222 358999999999999997    488999999999


Q ss_pred             ccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCeeEEEecCCCCCCCCC-CcccCC--CceEEccCCC-CCcHH-HHHHHHH
Q 021388          220 ALGPKGVLINIGRGPH-VDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGL--ENVVLMPHVG-SGTVE-TRKTMAD  293 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~ga~lDV~~~Ep~~~-~~L~~~--pnv~lTPH~a-~~t~~-~~~~~~~  293 (313)
                      .||+|++|||+|||++ ||+++| ++|++|+|+ +++|+   ||+++ +|||.+  |||++| |+| +++.+ ...++..
T Consensus       353 ~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~  426 (494)
T 3d64_A          353 AMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTN  426 (494)
T ss_dssp             HCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHH
T ss_pred             hCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHH
Confidence            9999999999999999 699999 999999997 44554   57655 489888  999999 999 66754 6788999


Q ss_pred             HHHHHHHHHHcCCCCCCCC
Q 021388          294 LVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       294 ~~~~nl~~~~~g~~~~~~v  312 (313)
                      .+++|+.+|++|+++.+.|
T Consensus       427 ~~~~ni~~~~~g~~~~n~V  445 (494)
T 3d64_A          427 QTLAQIELFTRGGEYANKV  445 (494)
T ss_dssp             HHHHHHHHHHHGGGSCSSE
T ss_pred             HHHHHHHHHHcCCCCCCce
Confidence            9999999999999988876

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=1.2e-36  Score=295.51  Aligned_cols=225  Identities=13%  Similarity=0.137  Sum_probs=195.0

Q ss_pred             CCCccEEE-EcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccC
Q 021388           65 LPKLEIVS-SFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFT  143 (313)
Q Consensus        65 ~~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~  143 (313)
                      +|+++.|+ .+++|+|++  +++.++||.++|++++++ +|+|       +++|++....+.++.| |.+.   .+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~---~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRA---TDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHH---HCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhc---cccccC
Confidence            47899998 889999998  789999999999999999 9999       4568888777777777 8631   356799


Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      |+++||||+|.||+.+|+++++||++|++||+++...     .++ ...++++++++||+|++|+    .|+++|+++.|
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  331 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIKLEHL  331 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBCHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcCHHHH
Confidence            9999999999999999999999999999999987532     223 2458999999999999995    58899999999


Q ss_pred             hccCCCcEEEEcCCCcc-ccHHHHHH--HHHhCCeeEEEecCCCCCCCCCCcccCC--CceEEccCCC-CCcHH-HHHHH
Q 021388          219 DALGPKGVLINIGRGPH-VDERELVS--ALVEGRLGGAGLDVFENEPHVPEELFGL--ENVVLMPHVG-SGTVE-TRKTM  291 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~-vd~~al~~--al~~~~l~ga~lDV~~~Ep~~~~~L~~~--pnv~lTPH~a-~~t~~-~~~~~  291 (313)
                      +.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.++  .+|||.+  |||++| |+| +++.+ ....+
T Consensus       332 ~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e~~~~s~  407 (479)
T 1v8b_A          332 LKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAFVMSFSF  407 (479)
T ss_dssp             TTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHH
T ss_pred             hhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCchhHHHHH
Confidence            99999999999999999 99999999  99999998 8999983322  3588888  999999 999 66755 67888


Q ss_pred             HHHHHHHHHHHHcCC--CCCCCC
Q 021388          292 ADLVLGNLEAHFLNK--PLLTPV  312 (313)
Q Consensus       292 ~~~~~~nl~~~~~g~--~~~~~v  312 (313)
                      ...+++|+..|++|+  ++.+.|
T Consensus       408 a~~~~~ni~~~~~g~~~~l~n~V  430 (479)
T 1v8b_A          408 CNQTFAQLDLWQNKDTNKYENKV  430 (479)
T ss_dssp             HHHHHHHHHHHHTTTSSSCCSSE
T ss_pred             HHHHHHHHHHHHcCCCCcCCcce
Confidence            899999999999999  887755

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=2e-29  Score=232.25  Aligned_cols=204  Identities=14%  Similarity=0.190  Sum_probs=162.0

Q ss_pred             CCceEEEEeCCCC--hhHHHHHHhc-CcEEEeecCCC---------hHHHHHhccCCceEEEEe----------------
Q 021388            1 MESIGVLMACPMN--TYLEQELERR-FNLFKFWTVSD---------KTQFLKAQQNNIRAVVGN----------------   52 (313)
Q Consensus         1 m~~~~vl~~~~~~--~~~~~~l~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~----------------   52 (313)
                      |++++|++.+...  ....+.|.+. +++.. ...++         ..+.+.+.++++|+++.+                
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~   81 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISL-VGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN   81 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEE-ESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEE-eccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence            6788988876422  3455667665 44443 22211         112234557789999985                


Q ss_pred             CCCCCCHHHHhhCCCccEEEEcCcCCCcCCh-hhhhhcCcEEEcCC------CCChHHHHHHHHHHHHHHHhchhHHHHH
Q 021388           53 ATAGADAELIDALPKLEIVSSFSVGLDKVDM-VKCKEKGVRVTNTP------DVLTDDVADLAIGLMLAVLRRLCESDRY  125 (313)
Q Consensus        53 ~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~al~~~L~~~r~~~~~~~~  125 (313)
                      ...++++++++.+|+||+|+   +|+|++|+ +++.++||.|+|++      ++++.+|||++++++|..          
T Consensus        82 ~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~----------  148 (293)
T 3d4o_A           82 ESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH----------  148 (293)
T ss_dssp             CCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             CCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh----------
Confidence            23358999999999999997   89999998 89999999999998      889999999999998863          


Q ss_pred             HhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc--CCCHHHHhhcCCE
Q 021388          126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY--YPSVVELASNCHI  198 (313)
Q Consensus       126 ~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~--~~~l~e~~~~aDv  198 (313)
                                  .+.++.|+++||||+|.||+.+|++++++|++|++|||+.++..     +...  ..+++++++++|+
T Consensus       149 ------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDv  216 (293)
T 3d4o_A          149 ------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV  216 (293)
T ss_dssp             ------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSE
T ss_pred             ------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCE
Confidence                        13468999999999999999999999999999999999865321     2221  2468899999999


Q ss_pred             EEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          199 LVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       199 V~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      |++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       217 Vi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          217 CINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             EEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            9999995     6888999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=9.5e-27  Score=215.01  Aligned_cols=210  Identities=13%  Similarity=0.223  Sum_probs=155.9

Q ss_pred             CCceEEEEeCCC--ChhHHHHHHhc-CcEEEeecCCCh---------HHHHHhccCCceEEEEe----C----------C
Q 021388            1 MESIGVLMACPM--NTYLEQELERR-FNLFKFWTVSDK---------TQFLKAQQNNIRAVVGN----A----------T   54 (313)
Q Consensus         1 m~~~~vl~~~~~--~~~~~~~l~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~~----~----------~   54 (313)
                      |++++|++...-  .....+.|.+. +++. +...++.         .+.+.+.++++|+++.+    .          .
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~   83 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIY-LVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN   83 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEE-EESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence            567889887652  23455667665 4443 2222111         11234556789999972    1          3


Q ss_pred             CC--CCHHHHhhCCCccEEEEcCcCCCcCC-hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCC
Q 021388           55 AG--ADAELIDALPKLEIVSSFSVGLDKVD-MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKW  131 (313)
Q Consensus        55 ~~--~~~~~l~~~~~Lk~i~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w  131 (313)
                      .+  ++++.++.+|++|+|+   +|+|++| ++++.++||.|+|+|+++  ++         ++.|+++..     .|.|
T Consensus        84 ~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~  144 (300)
T 2rir_A           84 EEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTI  144 (300)
T ss_dssp             SCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHH
T ss_pred             CCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHH
Confidence            45  7899999999999998   8999999 899999999999999974  33         334655543     2335


Q ss_pred             CCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc--CCCHHHHhhcCCEEEEecC
Q 021388          132 KKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY--YPSVVELASNCHILVVACP  204 (313)
Q Consensus       132 ~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~--~~~l~e~~~~aDvV~~~lp  204 (313)
                      .......+.++.|+++||||+|.||+.+|++++++|++|++|||+.++..     +...  ..+++++++++|+|++|+|
T Consensus       145 ~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p  224 (300)
T 2rir_A          145 MLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIP  224 (300)
T ss_dssp             HHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCS
T ss_pred             HHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCC
Confidence            31101135679999999999999999999999999999999999865321     2221  3578899999999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      .     ++++++.++.||+|+++||++||+.
T Consensus       225 ~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          225 S-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             S-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             h-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            6     6788999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.91  E-value=2.7e-26  Score=224.28  Aligned_cols=224  Identities=17%  Similarity=0.166  Sum_probs=176.2

Q ss_pred             CCccEE-EEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCC
Q 021388           66 PKLEIV-SSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTG  144 (313)
Q Consensus        66 ~~Lk~i-~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  144 (313)
                      ++++-+ -..++|+|++  .++.++||.++|+++.+. +|+|+.       +|++.........+ |.+.   .+..+.|
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r~---~~~~l~G  274 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INRG---TDALIGG  274 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHHH---HCCCCTT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHhc---cCCCCCc
Confidence            345544 4789999998  678899999999999998 999953       34443333333222 4321   1236899


Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      ++|+|+|+|.||+.+|++++++|++|+++|+++...     .++. ..+++++++.+|+|+.|++    +.++++.+.++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~  349 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHIK  349 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHHH
Confidence            999999999999999999999999999999987542     2333 3578899999999999976    56688889999


Q ss_pred             ccCCCcEEEEcCCCcc-ccHHHHHH-HHHhCCeeEEEecCCCCCCCCC-CcccCCCceE----EccCCCCCcHHHHHHHH
Q 021388          220 ALGPKGVLINIGRGPH-VDERELVS-ALVEGRLGGAGLDVFENEPHVP-EELFGLENVV----LMPHVGSGTVETRKTMA  292 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~-vd~~al~~-al~~~~l~ga~lDV~~~Ep~~~-~~L~~~pnv~----lTPH~a~~t~~~~~~~~  292 (313)
                      .||+|++++|+||+.. +|.++|.. +++++++. +.+|+++.++... -.++..+|++    +|||+++.+.+.   +.
T Consensus       350 ~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~  425 (494)
T 3ce6_A          350 AMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---FA  425 (494)
T ss_dssp             HSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HH
T ss_pred             hcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---HH
Confidence            9999999999999999 99999988 88888887 5789886644222 2477889988    999999988765   37


Q ss_pred             HHHHHHHHHHHcCCCCCCCC
Q 021388          293 DLVLGNLEAHFLNKPLLTPV  312 (313)
Q Consensus       293 ~~~~~nl~~~~~g~~~~~~v  312 (313)
                      ..+.++++.|.+|+++.+.|
T Consensus       426 ~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          426 NQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             HHHHHHHHHHHTGGGCCSSE
T ss_pred             HHHHHHHHHHHcCCCCCCEE
Confidence            78899999999988776543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.90  E-value=3.6e-23  Score=196.90  Aligned_cols=245  Identities=13%  Similarity=0.145  Sum_probs=177.0

Q ss_pred             CChhHHHHHHhcCcEEEeecCC------ChHHHH----------HhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcC
Q 021388           12 MNTYLEQELERRFNLFKFWTVS------DKTQFL----------KAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFS   75 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~   75 (313)
                      +.|...+.|.+....+......      ..++..          ++.++++|+|+. ...++++++....++..++....
T Consensus        18 ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~-vk~p~~~e~~~l~~~~~l~~~~~   96 (377)
T 2vhw_A           18 ITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLK-VKEPIAAEYGRLRHGQILFTFLH   96 (377)
T ss_dssp             CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEEC-SSCCCGGGGGGCCTTCEEEECCC
T ss_pred             cCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEE-eCCCChHHHhhcCCCCEEEEEec
Confidence            6788888887763333332111      122222          133446888765 55667777777788888888888


Q ss_pred             cCCCcCChhhhhhcCcEEE----------cCCCCChHHHHHHHHHHHHHHH-hchhHHHHHHhcCCCCCCCcccccccCC
Q 021388           76 VGLDKVDMVKCKEKGVRVT----------NTPDVLTDDVADLAIGLMLAVL-RRLCESDRYVRSGKWKKGDYKLTTKFTG  144 (313)
Q Consensus        76 ~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~al~~~L~~~-r~~~~~~~~~~~~~w~~~~~~~~~~l~g  144 (313)
                      .++|.-.++++.++||++.          |.|.+  .+.||++..+++.+. |++.    ....|.|.... . ..++.|
T Consensus        97 ~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~----~~~~g~~~~~~-~-~~~l~g  168 (377)
T 2vhw_A           97 LAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLM----RTQGGRGVLMG-G-VPGVEP  168 (377)
T ss_dssp             GGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTS----GGGTSCCCCTT-C-BTTBCC
T ss_pred             ccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHH----HhcCCCccccc-C-CCCCCC
Confidence            8899999999999999997          55654  466799985554444 7663    23344432111 1 236899


Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccc------cCCCHHHHhhcCCEEEEec--CCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYK------YYPSVVELASNCHILVVAC--PLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~------~~~~l~e~~~~aDvV~~~l--p~~~~t~  210 (313)
                      ++++|+|+|.||+.+++.++++|++|+++|++++..      .+..      ...+++++++++|+|+.++  |.+ .+.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~  247 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAP  247 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCc
Confidence            999999999999999999999999999999986532      1211      1235678889999999977  544 678


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC-CCCCC-CcccCCCceE--EccCCCCCcHH
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN-EPHVP-EELFGLENVV--LMPHVGSGTVE  286 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~-Ep~~~-~~L~~~pnv~--lTPH~a~~t~~  286 (313)
                      ++++++.++.||+|+++||+|..             .|.       ||+. ||.+. .|++..+||+  +|||+++.+..
T Consensus       248 ~li~~~~l~~mk~g~~iV~va~~-------------~Gg-------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          248 KLVSNSLVAHMKPGAVLVDIAID-------------QGG-------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             CCBCHHHHTTSCTTCEEEEGGGG-------------TTC-------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH
T ss_pred             ceecHHHHhcCCCCcEEEEEecC-------------CCC-------ccccccCCCCCCCEEEECCEEEEecCCcchhhHH
Confidence            89999999999999999999931             111       6777 88654 4899999998  99999999865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.83  E-value=1.9e-20  Score=177.56  Aligned_cols=270  Identities=16%  Similarity=0.179  Sum_probs=173.2

Q ss_pred             CChhHHHHHHhcCcEEEeecCC------ChHHHHH---------hccCCceEEEEeCCCCCCHHHHhhC-CCccEEEEcC
Q 021388           12 MNTYLEQELERRFNLFKFWTVS------DKTQFLK---------AQQNNIRAVVGNATAGADAELIDAL-PKLEIVSSFS   75 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~   75 (313)
                      +.|...+.|.+....+......      ..++...         +.+ ++|+|+. ...++. +.++.+ +..++++...
T Consensus        18 l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~-vk~p~~-~~~~~l~~~~~~~~~~~   94 (369)
T 2eez_A           18 LTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVK-VKEPLP-EEYGFLREGLILFTYLH   94 (369)
T ss_dssp             SCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEEC-SSCCCG-GGGGGCCTTCEEEECCC
T ss_pred             cCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEE-ECCCCH-HHHhhcCCCcEEEEEec
Confidence            6788888887764333332111      1222221         145 7999885 344554 446775 7899999999


Q ss_pred             cCCCcCChhhhhhcCcEEE---cCCCC-Ch----HHHHHHHH--HHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCC
Q 021388           76 VGLDKVDMVKCKEKGVRVT---NTPDV-LT----DDVADLAI--GLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGK  145 (313)
Q Consensus        76 ~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~al--~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~  145 (313)
                      .+.|..+++++.++||++.   +.+.. ..    .++++.+-  +.+++ ++.+....  ...+.|..+    ..++.++
T Consensus        95 ~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a-~~~l~~~~--~g~~~~~~~----~~~l~~~  167 (369)
T 2eez_A           95 LAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVG-AQFLEKPK--GGRGVLLGG----VPGVAPA  167 (369)
T ss_dssp             GGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHH-HHHTSGGG--TSCCCCTTC----BTBBCCC
T ss_pred             ccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHH-HHHHHHhc--CCCceecCC----CCCCCCC
Confidence            9999999999999999998   44432 11    45555444  33322 23232111  011223221    1368999


Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccc------cCCCHHHHhhcCCEEEEecCCCh-hhhcc
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYK------YYPSVVELASNCHILVVACPLTE-ETRHI  212 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~------~~~~l~e~~~~aDvV~~~lp~~~-~t~~l  212 (313)
                      +++|+|.|.||+.+++.++++|++|+++|++++..      .+..      ...+++++++.+|+|+.+++.+. .+..+
T Consensus       168 ~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~l  247 (369)
T 2eez_A          168 SVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKL  247 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchh
Confidence            99999999999999999999999999999986531      1111      12346678889999999998765 57788


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC-CCcccCCCceE---------EccCCCC
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV-PEELFGLENVV---------LMPHVGS  282 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~-~~~L~~~pnv~---------lTPH~a~  282 (313)
                      +.++.++.||+|+++||++-.             .|   |+ +|++  ||.+ +.|++..+|+.         +|||+|+
T Consensus       248 i~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as  308 (369)
T 2eez_A          248 VTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTST  308 (369)
T ss_dssp             SCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHH
Confidence            899999999999999999822             12   44 9998  6644 34788899999         8899888


Q ss_pred             C--cHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021388          283 G--TVETRKTMADLVLGNLEAHFLNKPLLT  310 (313)
Q Consensus       283 ~--t~~~~~~~~~~~~~nl~~~~~g~~~~~  310 (313)
                      .  +.+....+.+++.+++..++.++.+.+
T Consensus       309 ~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~  338 (369)
T 2eez_A          309 FALTNQTLPYVLKLAEKGLDALLEDAALLK  338 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHSCHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhcChHHhc
Confidence            5  567788899999888887877765443

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.81  E-value=3.6e-21  Score=184.79  Aligned_cols=155  Identities=17%  Similarity=0.169  Sum_probs=123.5

Q ss_pred             ccc-cCCCEEEEEcCChHHHHHHHHHHh-CCCCEEEecCCCCCccccccCCCHHHHhhcCCE-EEEecCCChhhhcccCH
Q 021388          139 TTK-FTGKTVGIIGLGRIGMAVAKRAEA-FSCPINYYSRTEKPNLKYKYYPSVVELASNCHI-LVVACPLTEETRHIINR  215 (313)
Q Consensus       139 ~~~-l~g~~igiiG~G~iG~~iA~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDv-V~~~lp~~~~t~~li~~  215 (313)
                      +.+ ++|+++||+|+|+||+.+|+++++ ||++|++++++....... ...+++++++.+|. .++ +|+ ++|++ ++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~-~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNP-DGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEE-EEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCc-cCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            446 999999999999999999999999 999999995433211111 11256776664443 222 566 56777 788


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC--cccCCCceEEccCC----C--------
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLENVVLMPHV----G--------  281 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~--~L~~~pnv~lTPH~----a--------  281 (313)
                      +.|..||+ .++||++||++||+++ +++|+.+.|.+++     +||++++  +|++++||++|||+    |        
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E  354 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFE  354 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHH
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeeh
Confidence            89999988 6999999999999999 6999999999876     8997653  89999999999999    5        


Q ss_pred             ---------CCcHHHHHHHHHHHHHHHHHHHc
Q 021388          282 ---------SGTVETRKTMADLVLGNLEAHFL  304 (313)
Q Consensus       282 ---------~~t~~~~~~~~~~~~~nl~~~~~  304 (313)
                               +.+++...++.+.+.+|+.++++
T Consensus       355 ~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          355 WVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence                     55678888999999999998873

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.75  E-value=2.1e-18  Score=165.18  Aligned_cols=218  Identities=17%  Similarity=0.199  Sum_probs=145.3

Q ss_pred             CChhHHHHHHhcCcEEEeecCC-----ChHHHHHh----------ccCCceEEEEeCCCCCCHHHHhhC-CCccEEEEcC
Q 021388           12 MNTYLEQELERRFNLFKFWTVS-----DKTQFLKA----------QQNNIRAVVGNATAGADAELIDAL-PKLEIVSSFS   75 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~   75 (313)
                      +.|+..+.|.+....+......     -.++...+          ..+ +|+|+.. ..+ +++.++.+ |++++|+..+
T Consensus        25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~v-k~p-~~~~i~~l~~~~~li~~~~  101 (401)
T 1x13_A           25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKV-NAP-LDDEIALLNPGTTLVSFIW  101 (401)
T ss_dssp             CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECS-SCC-CHHHHTTCCTTCEEEECCC
T ss_pred             CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEe-CCC-CHHHHHHhcCCCcEEEEec
Confidence            6788888887764334332111     12222221          233 8988863 333 56778887 6899999999


Q ss_pred             cCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHH--HHHHhcC-----CCCCCCcccccccCCCEEE
Q 021388           76 VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCES--DRYVRSG-----KWKKGDYKLTTKFTGKTVG  148 (313)
Q Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~--~~~~~~~-----~w~~~~~~~~~~l~g~~ig  148 (313)
                      .|+|+.|++++.++||++.+     .+.|+|++.++.|.+++.+...  ...+..+     .|.........++.|++|+
T Consensus       102 ~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~  176 (401)
T 1x13_A          102 PAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVM  176 (401)
T ss_dssp             GGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEE
T ss_pred             CCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeeccCcCCCEEE
Confidence            99999999999999999974     3444454444432222222221  1122222     2211100001158899999


Q ss_pred             EEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCC---------------------------CHHHHhhcC
Q 021388          149 IIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYP---------------------------SVVELASNC  196 (313)
Q Consensus       149 iiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~---------------------------~l~e~~~~a  196 (313)
                      |+|.|.||..+++.++++|++|+++|+++...     .+.....                           ++.++++.+
T Consensus       177 ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~a  256 (401)
T 1x13_A          177 VIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEV  256 (401)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999987532     1222111                           367788899


Q ss_pred             CEEEEe--cCCChhhhcccCHHHHhccCCCcEEEEcC--CCccccH
Q 021388          197 HILVVA--CPLTEETRHIINREVIDALGPKGVLINIG--RGPHVDE  238 (313)
Q Consensus       197 DvV~~~--lp~~~~t~~li~~~~l~~mk~ga~lIn~~--rg~~vd~  238 (313)
                      |+|+.+  +|.. .+..+++++.++.||+|+++||++  ||+.++.
T Consensus       257 DvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          257 DIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             SEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             CEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            999999  5542 355788999999999999999999  8876654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.70  E-value=4.9e-17  Score=155.60  Aligned_cols=153  Identities=18%  Similarity=0.231  Sum_probs=116.1

Q ss_pred             EEcCcCCCcCC-hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEE
Q 021388           72 SSFSVGLDKVD-MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGII  150 (313)
Q Consensus        72 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igii  150 (313)
                      =-+++|+..+. +.+..+.+|+|.|++....++..+...+..-++...+.      +.         .+.++.|+++||+
T Consensus       153 EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~------ra---------tg~~L~GktVgIi  217 (436)
T 3h9u_A          153 EETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK------RA---------TDVMIAGKTACVC  217 (436)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH------HH---------HCCCCTTCEEEEE
T ss_pred             eccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH------Hh---------cCCcccCCEEEEE
Confidence            34567776552 34456789999999876666544444443333332221      11         2456999999999


Q ss_pred             cCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388          151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG  225 (313)
Q Consensus       151 G~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  225 (313)
                      |+|.||+.+|++|+++|++|+++|+++...     .++. ..++++++++||+|+++    +.+.++|+++.|+.||+|+
T Consensus       218 G~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~-~~sL~eal~~ADVVilt----~gt~~iI~~e~l~~MK~gA  292 (436)
T 3h9u_A          218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQ-VLLVEDVVEEAHIFVTT----TGNDDIITSEHFPRMRDDA  292 (436)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEEC----SSCSCSBCTTTGGGCCTTE
T ss_pred             eeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCe-ecCHHHHHhhCCEEEEC----CCCcCccCHHHHhhcCCCc
Confidence            999999999999999999999999976432     1222 45899999999999963    4588899999999999999


Q ss_pred             EEEEcCCCcc-ccHHHHHHH
Q 021388          226 VLINIGRGPH-VDERELVSA  244 (313)
Q Consensus       226 ~lIn~~rg~~-vd~~al~~a  244 (313)
                      +|||+|||.+ +|.++|.+.
T Consensus       293 IVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          293 IVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             EEEECSSSGGGBCHHHHHHH
T ss_pred             EEEEeCCCCCccCHHHHHhh
Confidence            9999999997 999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.69  E-value=1.9e-16  Score=150.89  Aligned_cols=218  Identities=10%  Similarity=0.101  Sum_probs=142.6

Q ss_pred             CChhHHHHHHhcCcEEEeecCC------ChHHHH----------HhccCCceEEEEeCCCCC----CHHHHhhCC-CccE
Q 021388           12 MNTYLEQELERRFNLFKFWTVS------DKTQFL----------KAQQNNIRAVVGNATAGA----DAELIDALP-KLEI   70 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~i~~~~~~~~----~~~~l~~~~-~Lk~   70 (313)
                      +.|+..+.|.+....+......      ..++..          .+.++++|+|+.. ..++    +++.++.++ .+++
T Consensus        18 l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~~   96 (384)
T 1l7d_A           18 ISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGAVL   96 (384)
T ss_dssp             CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCEE
T ss_pred             CCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCCEE
Confidence            6788888888764333332111      122222          2446789998875 3455    678899986 5899


Q ss_pred             EEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhc-----CCCCCCCcccc-cccCC
Q 021388           71 VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS-----GKWKKGDYKLT-TKFTG  144 (313)
Q Consensus        71 i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~-----~~w~~~~~~~~-~~l~g  144 (313)
                      ++....+.|+.+++++.++||.+++. +...+.+++..+. +|+..+.+ ..+..+..     +.|... ...+ .++.|
T Consensus        97 i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~-~~~~~~~l~g  172 (384)
T 1l7d_A           97 MCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPM-MMTAAGTVPP  172 (384)
T ss_dssp             EEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSC-EEETTEEECC
T ss_pred             EEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccc-hhccCCCCCC
Confidence            99999999999999999999999974 1111111111221 12222211 11111111     222110 0001 36899


Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccC---C----------------C----------HH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYY---P----------------S----------VV  190 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~---~----------------~----------l~  190 (313)
                      ++++|+|.|.+|..+++.++++|++|+++|+++...     .+....   .                +          +.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            999999999999999999999999999999987532     222111   0                1          67


Q ss_pred             HHhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcC--CCcc
Q 021388          191 ELASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIG--RGPH  235 (313)
Q Consensus       191 e~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~--rg~~  235 (313)
                      ++++.+|+|+.++  |..+ +.++++++.++.||+|+++||++  ||+.
T Consensus       253 ~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~  300 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGN  300 (384)
T ss_dssp             HHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCC
Confidence            7888999999877  4332 45678899999999999999999  7653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.65  E-value=2e-17  Score=158.63  Aligned_cols=208  Identities=17%  Similarity=0.232  Sum_probs=155.6

Q ss_pred             CCccEEEEcCcCCCcCChhhhh-----hcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc--cc
Q 021388           66 PKLEIVSSFSVGLDKVDMVKCK-----EKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY--KL  138 (313)
Q Consensus        66 ~~Lk~i~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~--~~  138 (313)
                      +.+++|...++|+|++++....     ++++.+++.+|.. .+++++.+..++.+.|++..... ...+.|.....  ..
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~-~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL-DEALKIVFRRAINLGKRAREETR-ISEGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc-hHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHHHHHH
Confidence            4578899999999999998876     7899999998884 57999999999999999865432 22344531100  01


Q ss_pred             c----cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc------cccc--cCCCHHHHhhcCCEEEEecCC
Q 021388          139 T----TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN------LKYK--YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       139 ~----~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~------~~~~--~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .    .++.|++++|||+|.||+.+++.++.+|+ +|+++||+.++.      .+..  ...++.+++..+|+|+.|+|.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            1    14789999999999999999999999999 899999987542      1222  124677888999999999874


Q ss_pred             ChhhhcccCHHHHhc--cC----CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC-CCcccCCCceEE--
Q 021388          206 TEETRHIINREVIDA--LG----PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV-PEELFGLENVVL--  276 (313)
Q Consensus       206 ~~~t~~li~~~~l~~--mk----~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~-~~~L~~~pnv~l--  276 (313)
                      +   ..+++.+.++.  ||    ++.++||++                             +|.. .++++++|||++  
T Consensus       238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d  285 (404)
T 1gpj_A          238 P---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT  285 (404)
T ss_dssp             S---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred             C---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence            4   45566666766  32    445566654                             3543 457999999999  


Q ss_pred             ccCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 021388          277 MPHVGSGTVETRK----------TMADLVLGNLEAHFLNKP  307 (313)
Q Consensus       277 TPH~a~~t~~~~~----------~~~~~~~~nl~~~~~g~~  307 (313)
                      +||+++.+.+..+          .+....++++..|+.+.+
T Consensus       286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998887654          667777888888886643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.64  E-value=1.7e-16  Score=151.71  Aligned_cols=100  Identities=15%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +..+.||++||+|+|.||+.+|+++++||++|+++++++...     .++. ..++++++++||+|+++.    .|+++|
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~-vv~LeElL~~ADIVv~at----gt~~lI  316 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFE-VVTLDDAASTADIVVTTT----GNKDVI  316 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECC----SSSSSB
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCce-eccHHHHHhhCCEEEECC----CCcccc
Confidence            457999999999999999999999999999999999876421     2222 357999999999999864    378899


Q ss_pred             CHHHHhccCCCcEEEEcCCCcc-ccHHHHHH
Q 021388          214 NREVIDALGPKGVLINIGRGPH-VDERELVS  243 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~  243 (313)
                      +++.|+.||+|++|||+|||.+ +|.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999998 99988874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.57  E-value=5.5e-15  Score=141.15  Aligned_cols=156  Identities=18%  Similarity=0.259  Sum_probs=111.5

Q ss_pred             CccEE-EEcCcCCCcC-ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCC
Q 021388           67 KLEIV-SSFSVGLDKV-DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTG  144 (313)
Q Consensus        67 ~Lk~i-~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  144 (313)
                      +++-+ =-+++|+-.+ .+...-+..++|.|+.....++--+-.-+.--++...+.      +.         .+..+.|
T Consensus       156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~------ra---------t~~~L~G  220 (435)
T 3gvp_A          156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLK------RT---------TDMMFGG  220 (435)
T ss_dssp             TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHH------HH---------HCCCCTT
T ss_pred             hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHHH------Hh---------hCceecC
Confidence            44433 3456776654 233334568999999886666554432222222221111      11         1346999


Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      ++++|+|+|.||+.+|++|++||++|+++|+++...     .++ ...+++++++++|+|++|    +.|.++|+++.|+
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~  295 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNVVTREHLD  295 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCSBCHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCcccCCHHHHH
Confidence            999999999999999999999999999999876321     222 245799999999999995    4578899999999


Q ss_pred             ccCCCcEEEEcCCCcc-ccHHHHH
Q 021388          220 ALGPKGVLINIGRGPH-VDERELV  242 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~-vd~~al~  242 (313)
                      .||+|+++||+|||.+ +|.++|.
T Consensus       296 ~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          296 RMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             HSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             hcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999998 7877664

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.55  E-value=5e-15  Score=136.52  Aligned_cols=111  Identities=15%  Similarity=0.242  Sum_probs=98.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~  217 (313)
                      ++||+||+|.||.+||++|...|++|.+|||++++.     .+.....++.|+++.+|+|++|+|..++.+.++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            689999999999999999999999999999987643     3556678999999999999999999998888773  347


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ++.+++|.++||+++.++-+.+.+.+.+++..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            8899999999999999999999999999999987  7775

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.54  E-value=1.5e-14  Score=133.11  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=95.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      ++|||||+|.||.+||++|...|++|.+|||++++..     +.....++.|+++++|+|++|+|..+..+.++..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            5899999999999999999999999999999887533     44567889999999999999999888888888888999


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      .+++|.++||+++...-+.+.+.+.+.+..+.  .+|.
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            99999999999999999999999999999988  6665

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.44  E-value=1.4e-13  Score=126.99  Aligned_cols=115  Identities=11%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +...++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++++++|+|++++|....++.++.+
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            45678999999999999999999999999999999876322     3445678999999999999999987778877753


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      +.+..+++|.++||++++...+.+++.+.+++..+.  .+|.
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda  125 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG  125 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence            345668899999999999999999999999988776  5553

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.44  E-value=2e-13  Score=126.11  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=96.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhccc-
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHII-  213 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li-  213 (313)
                      .....++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++++++|+|++|+|....++.++ 
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHh
Confidence            345668999999999999999999999999999999876432     34456789999999999999999776777666 


Q ss_pred             -CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          214 -NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       214 -~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                       .++.+..+++|.++||+++..+...+.+.+.+.+..+.  .+|
T Consensus        97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~  138 (310)
T 3doj_A           97 DKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE  138 (310)
T ss_dssp             STTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             CchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence             35567889999999999999999999999999887766  445

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.42  E-value=2.7e-13  Score=125.84  Aligned_cols=114  Identities=16%  Similarity=0.234  Sum_probs=97.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH-
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR-  215 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~-  215 (313)
                      ...++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....+++++++++|+|++++|.....+.++.. 
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~  108 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ  108 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence            456799999999999999999999999999999987632     24445678999999999999999977777777643 


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      +.++.+++|.++||++++.+.+.+.+.+.+++..+.  .+|.
T Consensus       109 ~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~~  148 (320)
T 4dll_A          109 GVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLDT  148 (320)
T ss_dssp             CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence            677889999999999999999999999999988776  4453

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.41  E-value=8.2e-13  Score=122.17  Aligned_cols=135  Identities=13%  Similarity=0.139  Sum_probs=93.3

Q ss_pred             HHHhcCCCC-CCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC--CC-----ccccccCCCHHHHhh
Q 021388          124 RYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE--KP-----NLKYKYYPSVVELAS  194 (313)
Q Consensus       124 ~~~~~~~w~-~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~--~~-----~~~~~~~~~l~e~~~  194 (313)
                      ++.+.+.|. +.+++.......++|||||+|.||..+|+.|...|+ +|.+||+++  +.     ..+.....++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~   82 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAG   82 (312)
T ss_dssp             ----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHH
T ss_pred             cccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHh
Confidence            445566664 333333334456799999999999999999999999 999999973  22     124445678999999


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEec--CCCCCC
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLD--VFENEP  262 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lD--V~~~Ep  262 (313)
                      +||+|++++|...... ++ ++..+.+++++++||+++......+++.+.+.+.  .+.  .+|  |+.++|
T Consensus        83 ~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv~g~~~  150 (312)
T 3qsg_A           83 ECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAVMSAVK  150 (312)
T ss_dssp             HCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEECSCST
T ss_pred             cCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccccCCch
Confidence            9999999999776554 33 6778889999999999999999999999999876  554  445  455443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.40  E-value=2.8e-12  Score=118.85  Aligned_cols=162  Identities=19%  Similarity=0.217  Sum_probs=106.6

Q ss_pred             cCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCc-----ccc--ccCCCHHH-HhhcCC
Q 021388          128 SGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPN-----LKY--KYYPSVVE-LASNCH  197 (313)
Q Consensus       128 ~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~e-~~~~aD  197 (313)
                      .+.|.....+...++..++|||||+|.||+.+|+.|+..|+  +|.+||++++..     .+.  ....++++ ++++||
T Consensus        17 ~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           17 RGSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPD   96 (314)
T ss_dssp             ------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCS
T ss_pred             cccCcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCC
Confidence            34564333222334556899999999999999999999999  899999987532     122  22457788 899999


Q ss_pred             EEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC---CCC-CcccCCCc
Q 021388          198 ILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP---HVP-EELFGLEN  273 (313)
Q Consensus       198 vV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep---~~~-~~L~~~pn  273 (313)
                      +|++|+|... +..++ ++....++++++++|++.......+++.+.+.. +..+ .--++..|-   ... ..|++-..
T Consensus        97 vVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhcCCE
Confidence            9999999543 44444 667788999999999998776556777777755 3322 223454442   111 25788889


Q ss_pred             eEEccCCCCCcHHHHHHHHHH
Q 021388          274 VVLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       274 v~lTPH~a~~t~~~~~~~~~~  294 (313)
                      +++||+-+ .+.+..+++.+.
T Consensus       173 ~il~~~~~-~~~~~~~~v~~l  192 (314)
T 3ggo_A          173 VILTPTKK-TDKKRLKLVKRV  192 (314)
T ss_dssp             EEECCCTT-SCHHHHHHHHHH
T ss_pred             EEEEeCCC-CCHHHHHHHHHH
Confidence            99999843 455555544433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.39  E-value=5.8e-13  Score=122.21  Aligned_cols=106  Identities=18%  Similarity=0.253  Sum_probs=93.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++++ +|+|++|+|....++.++ ++.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999887532     3445678999999 999999999877777777 7788


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +.+++|.++||+++....+.+.+.+.+.+..+.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            899999999999999999999999999887766

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.39  E-value=9e-13  Score=124.29  Aligned_cols=117  Identities=15%  Similarity=0.227  Sum_probs=97.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcC---CEEEEecCCChhhhccc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNC---HILVVACPLTEETRHII  213 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~a---DvV~~~lp~~~~t~~li  213 (313)
                      +.+++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....+++++++++   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567899999999999999999999999999999987532     2444567899999999   9999999976 677776


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                       .+++..+++|.++||++++...+...+.+.+.+..+......|+..
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence             6788889999999999999999999999999998887444444433

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.37  E-value=7.4e-13  Score=120.73  Aligned_cols=110  Identities=16%  Similarity=0.282  Sum_probs=94.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhccc--CHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHII--NREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~~~  217 (313)
                      ++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++++++|+|++|+|....++.++  .++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            6899999999999999999999999999999876432     34456789999999999999999776777766  2567


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                      ++.+++|.++||+++....+.+.+.+.+++..+.  .+|
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~  118 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE  118 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence            7889999999999999999999999999887766  444

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.36  E-value=1.2e-12  Score=119.35  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=93.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhccc--CHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHII--NREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~~~  217 (313)
                      ++|||||+|.||..+|+.|...|++|.+|||+++...     +.....+++++++++|+|++++|....++.++  .++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            4799999999999999999999999999999876432     34456789999999999999999776777665  2456


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ++.+++|.++||++++...+.+.+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~~  119 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLEA  119 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence            7889999999999999999999999999887766  4453

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.33  E-value=1.3e-12  Score=120.06  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=93.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc-CCCHHHHhhcCCEEEEecCCChhhhcccC--H
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY-YPSVVELASNCHILVVACPLTEETRHIIN--R  215 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~-~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~  215 (313)
                      .++|||||+|.||..+|+.|...|++|.+|||+++..     .+... ..++++++++||+|++++|.+...+.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            4689999999999999999999999999999987532     23334 56888999999999999997767776653  4


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                      +.++.+++|.++||+++......+.+.+.+.+..+.  .+|
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  125 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD  125 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence            567889999999999999999999999999887665  445

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.33  E-value=8e-12  Score=113.29  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=102.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCc-----cccc--cCCCHHHHhh-cCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPN-----LKYK--YYPSVVELAS-NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~-----~~~~--~~~~l~e~~~-~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++|||||+|.||..+|+.|+..|+  +|++||++++..     .+..  ...+++++++ ++|+|++|+|.. .+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHH-
Confidence            589999999999999999999998  899999986532     1221  2346878888 999999999954 444555 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC---CC-CcccCCCceEEccCCCCCcHHHHHH
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH---VP-EELFGLENVVLMPHVGSGTVETRKT  290 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~---~~-~~L~~~pnv~lTPH~a~~t~~~~~~  290 (313)
                      .+..+.++++++++|++++.....+.+.+.+.++-+.  ...++..|..   .. .++++.++++++||.++. .+..+.
T Consensus        80 ~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~~~  156 (281)
T 2g5c_A           80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRLKL  156 (281)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHHHH
Confidence            4566789999999999998877778888888764221  1233444421   11 257788889999997654 444444


Q ss_pred             H
Q 021388          291 M  291 (313)
Q Consensus       291 ~  291 (313)
                      +
T Consensus       157 v  157 (281)
T 2g5c_A          157 V  157 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.31  E-value=3.7e-12  Score=118.06  Aligned_cols=132  Identities=12%  Similarity=0.072  Sum_probs=94.6

Q ss_pred             HHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCC-------Cc-----cccccCC-C
Q 021388          123 DRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEK-------PN-----LKYKYYP-S  188 (313)
Q Consensus       123 ~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~-------~~-----~~~~~~~-~  188 (313)
                      +...+...|.+.-+ .. . -.++|||||+|.||..+|+.|...| ++|.+||++++       ..     .+.  .. +
T Consensus         6 ~~~~~~~~~~~~~~-~~-~-M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s   80 (317)
T 4ezb_A            6 HHSSGVDLGTENLY-FQ-S-MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLD   80 (317)
T ss_dssp             ---------CCCHH-HH-T-SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEES
T ss_pred             ccccccccCcccCc-cc-c-cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCC
Confidence            34444456764321 11 1 2378999999999999999999999 99999999862       10     122  45 7


Q ss_pred             HHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCC
Q 021388          189 VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE  261 (313)
Q Consensus       189 l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~E  261 (313)
                      +.+++++||+|++++|.......+  ++.++.+++|.++||+++......+.+.+.+++..+.....-|+.++
T Consensus        81 ~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~  151 (317)
T 4ezb_A           81 DVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV  151 (317)
T ss_dssp             SGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred             HHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence            889999999999999976655543  67888899999999999999999999999998876653222355543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.29  E-value=1.2e-11  Score=113.43  Aligned_cols=136  Identities=17%  Similarity=0.163  Sum_probs=90.7

Q ss_pred             HHHHHHhcCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEE
Q 021388          121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHIL  199 (313)
Q Consensus       121 ~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV  199 (313)
                      ++...++...|....      ...++||||| +|.||..+|+.|+..|++|.+||+++..        +..+.+++||+|
T Consensus         4 ~~~~~~~~~~~~~~~------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------~~~~~~~~aDvV   69 (298)
T 2pv7_A            4 ESYANENQFGFKTIN------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------VAESILANADVV   69 (298)
T ss_dssp             ---------CCCCSC------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------GHHHHHTTCSEE
T ss_pred             hHHhhhhccCccccC------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------CHHHHhcCCCEE
Confidence            334455566786321      1346899999 9999999999999999999999987642        577889999999


Q ss_pred             EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC--CCcccCCCceEEc
Q 021388          200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV--PEELFGLENVVLM  277 (313)
Q Consensus       200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~--~~~L~~~pnv~lT  277 (313)
                      ++|+|... +..++ +++...++++++++|+++......+++.+.+   ...     +....|..  ..+++....++++
T Consensus        70 ilavp~~~-~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~-----~v~~hP~~g~~~~~~~g~~~~l~  139 (298)
T 2pv7_A           70 IVSVPINL-TLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGA-----VLGLHPMFGADIASMAKQVVVRC  139 (298)
T ss_dssp             EECSCGGG-HHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSE-----EEEEEECSCTTCSCCTTCEEEEE
T ss_pred             EEeCCHHH-HHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCC-----EEeeCCCCCCCchhhcCCeEEEe
Confidence            99999543 55565 4566779999999999887654445554443   122     12222321  1246666689999


Q ss_pred             cCC
Q 021388          278 PHV  280 (313)
Q Consensus       278 PH~  280 (313)
                      ||-
T Consensus       140 ~~~  142 (298)
T 2pv7_A          140 DGR  142 (298)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            974

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.28  E-value=1.9e-11  Score=111.29  Aligned_cols=139  Identities=12%  Similarity=0.166  Sum_probs=101.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc------------------------------cccCCCHHHHhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK------------------------------YKYYPSVVELAS  194 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~------------------------------~~~~~~l~e~~~  194 (313)
                      ++|+|||.|.||..+|+.+...|++|.+||++++....                              .....++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            68999999999999999999999999999998653110                              123467888999


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV  274 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv  274 (313)
                      +||+|+.++|.+.+.+..+-++..+.+++++++++.+.+  +...++.+++... .+..++..+.       |.+..+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~lv  154 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNNTA  154 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSCEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCceE
Confidence            999999999988777766667788889999999965444  3456777777543 2334555442       44567788


Q ss_pred             EEccCCCCCcHHHHHHHHHH
Q 021388          275 VLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       275 ~lTPH~a~~t~~~~~~~~~~  294 (313)
                      .++||- ..+.+..++....
T Consensus       155 evv~~~-~t~~~~~~~~~~l  173 (283)
T 4e12_A          155 EVMGTT-KTDPEVYQQVVEF  173 (283)
T ss_dssp             EEEECT-TSCHHHHHHHHHH
T ss_pred             EEEeCC-CCCHHHHHHHHHH
Confidence            899983 3445555544443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.27  E-value=4.5e-12  Score=123.76  Aligned_cols=114  Identities=15%  Similarity=0.155  Sum_probs=95.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------c--cccCCCHHHHhh---cCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------K--YKYYPSVVELAS---NCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~--~~~~~~l~e~~~---~aDvV~~~lp~~~~t~  210 (313)
                      .++|||||+|.||..+|++|...|++|.+|||+++...        +  .....+++++++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            35799999999999999999999999999999876321        1  112468888887   4999999999887788


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      .++ +++++.|++|.++||++++...+...+.+.+.+..+......|.
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVs  130 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVS  130 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCcc
Confidence            777 67889999999999999999999999999999988874433343

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.23  E-value=9.9e-11  Score=111.42  Aligned_cols=213  Identities=13%  Similarity=0.134  Sum_probs=127.0

Q ss_pred             CChhHHHHHHhcCcEEEeecCCC-----hHHHHH---------hccCCceEEEEeCCCCCCHHHHhhCC-CccEEEEcCc
Q 021388           12 MNTYLEQELERRFNLFKFWTVSD-----KTQFLK---------AQQNNIRAVVGNATAGADAELIDALP-KLEIVSSFSV   76 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~   76 (313)
                      +.|+..+.|.+....+.......     ++++..         +.+.++|+|+.-. .+ +++.++.++ .--++...-.
T Consensus        43 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk-~p-~~~e~~~l~~g~~l~~~lh~  120 (405)
T 4dio_A           43 GSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVR-RP-SAQEISGYRSGAVVIAIMDP  120 (405)
T ss_dssp             CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEE-CC-CTTTGGGSCTTCEEEEECCC
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeC-CC-ChhHHhhcCCCcEEEEEecc
Confidence            66888888876633343332211     222221         2234578877532 22 334455554 4555655544


Q ss_pred             CCCcCChhhhhhcCcEEEc---CCCCC-------hHHHHHHHHHHH-HHHHhchhHHHHHHhcCCCCCCCcccccccCCC
Q 021388           77 GLDKVDMVKCKEKGVRVTN---TPDVL-------TDDVADLAIGLM-LAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGK  145 (313)
Q Consensus        77 G~d~id~~~~~~~gI~v~n---~~~~~-------~~~vAE~al~~~-L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~  145 (313)
                      .-|.=-++++.++||....   .+...       -.+++|.+=.+. +..+..+         ++....-..-...+.+.
T Consensus       121 ~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av~~aa~~l---------~~~~~~l~t~~g~v~~~  191 (405)
T 4dio_A          121 YGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAVIDAAYEY---------DRALPMMMTAAGTVPAA  191 (405)
T ss_dssp             TTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHC---------SSCSSCEEETTEEECCC
T ss_pred             ccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHHHHHHHHHh---------HhhhchhhccCCCcCCC
Confidence            4443345677889998854   33211       134444432111 1111111         11110000001247899


Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc-----------------------------CCCHHH
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY-----------------------------YPSVVE  191 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~-----------------------------~~~l~e  191 (313)
                      +|+|||+|.||..+++.++++|++|+++|+++...     .+...                             ..++.+
T Consensus       192 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e  271 (405)
T 4dio_A          192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAE  271 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHH
Confidence            99999999999999999999999999999987531     11110                             125678


Q ss_pred             HhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcC--CCccc
Q 021388          192 LASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIG--RGPHV  236 (313)
Q Consensus       192 ~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~--rg~~v  236 (313)
                      .++++|+|+.++  |.. ....+++++.++.||+|+++||++  +|+.+
T Consensus       272 ~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          272 HIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             HhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            899999999885  533 356788999999999999999998  55543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.22  E-value=2.1e-11  Score=119.20  Aligned_cols=109  Identities=16%  Similarity=0.232  Sum_probs=91.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccccCCCHHHHhhc---CCEEEEecCCChhh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYKYYPSVVELASN---CHILVVACPLTEET  209 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~e~~~~---aDvV~~~lp~~~~t  209 (313)
                      ...++|||||+|.||+.+|++|...|++|.+|||+++...         +.....++++++++   +|+|++++|....+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            5567899999999999999999999999999999865311         33445688898887   99999999987778


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +.++ +++.+.+++|.++||++.|...+.+.+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            8887 5678889999999999999988989999999886665

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.21  E-value=1.6e-11  Score=111.75  Aligned_cols=136  Identities=18%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCc-----ccc--ccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPN-----LKY--KYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~-----~~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      -++|||||+|.||+.+|+.|...  |++|.+||++++..     .+.  ....+++++++++|+|++++|... ...++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHH-
Confidence            36899999999999999999876  67999999976532     122  124567788899999999999443 34454 


Q ss_pred             HHHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec---CCCCC---CCCC-CcccCCCceEEccCCCCC
Q 021388          215 REVIDA-LGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD---VFENE---PHVP-EELFGLENVVLMPHVGSG  283 (313)
Q Consensus       215 ~~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD---V~~~E---p~~~-~~L~~~pnv~lTPH~a~~  283 (313)
                      ++..+. ++++.+++|+++......+.+.+.+.+....  .++   ++..|   |... .++++-++++++||.++.
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            456677 8999999999988776678888888753333  233   33222   2222 267778889999987654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.19  E-value=5.1e-10  Score=105.73  Aligned_cols=207  Identities=9%  Similarity=0.080  Sum_probs=125.4

Q ss_pred             CChhHHHHHHhcCcEEEeecCCC-----hHHHHHh-------ccCCceEEEEeCCCCCCHHHHhhCC-CccEEEEcCcCC
Q 021388           12 MNTYLEQELERRFNLFKFWTVSD-----KTQFLKA-------QQNNIRAVVGNATAGADAELIDALP-KLEIVSSFSVGL   78 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~   78 (313)
                      +.|+..+.|.+....+.......     ++++..+       ..+ +|+|+. -. ..+.+.++.++ +-.++...-...
T Consensus        40 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlk-Vk-~p~~~e~~~l~~g~~l~~~lh~~~  116 (381)
T 3p2y_A           40 LVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWP-ADVVVK-VN-PPTSDEISQLKPGSVLIGFLAPRT  116 (381)
T ss_dssp             SCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEEC-SS-CCCHHHHTTSCTTCEEEECCCTTT
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeec-CCEEEE-eC-CCChhHHhhccCCCEEEEEecccc
Confidence            66888888877643344432221     2233222       122 677765 22 24556677765 444555544444


Q ss_pred             CcCChhhhhhcCcEEEc---CCCCC-------hHHHHHHHHHHHH-HHHhchhHHHHHHhcCCCCCCCcccccccCCCEE
Q 021388           79 DKVDMVKCKEKGVRVTN---TPDVL-------TDDVADLAIGLML-AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTV  147 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n---~~~~~-------~~~vAE~al~~~L-~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~i  147 (313)
                      |.=-++++.++||....   .|...       -.+++|.+=.+.. ..+..+         ++....-..-...+.+++|
T Consensus       117 ~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~~aa~~l---------~~~~~~l~~~~~~v~~~kV  187 (381)
T 3p2y_A          117 QPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVLLGASLS---------TRFVPMLTTAAGTVKPASA  187 (381)
T ss_dssp             CHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHHHHHHHC---------SSCSSCEECSSCEECCCEE
T ss_pred             CHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHHHHHHHHh---------hhhhhhhhcccCCcCCCEE
Confidence            43335678889998854   23211       1344444321111 111111         1111000001124789999


Q ss_pred             EEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc-------------------------CCCHHHHhhcCC
Q 021388          148 GIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY-------------------------YPSVVELASNCH  197 (313)
Q Consensus       148 giiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~-------------------------~~~l~e~~~~aD  197 (313)
                      +|||+|.||..+++.++++|++|+++|+++....     +...                         ..++.+.++++|
T Consensus       188 ~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aD  267 (381)
T 3p2y_A          188 LVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFD  267 (381)
T ss_dssp             EEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCS
T ss_pred             EEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999875311     1111                         124678899999


Q ss_pred             EEEEec--CCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          198 ILVVAC--PLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       198 vV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      +|+.++  |.. .+..+++++.++.||+|+++||++
T Consensus       268 IVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          268 IVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             EEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             EEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEe
Confidence            999886  532 356789999999999999999997

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.19  E-value=1.4e-10  Score=108.84  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=86.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhh-cCCEEEEecCCChhhhcccC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELAS-NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++.||+++|+|+|++|+.+|++++.+|++|+++|+++...     .+.. ..+.++++. +||+++.|     .+.++|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecHh-----HHHhhcC
Confidence            6899999999999999999999999999999999875421     1222 235678777 89998743     4788999


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+.++.|| ..+++|.+++.++++++ .++|+++++.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 78999999999999888 6999999886

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.18  E-value=1.7e-11  Score=109.45  Aligned_cols=92  Identities=15%  Similarity=0.257  Sum_probs=67.4

Q ss_pred             cccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC--------------c------cccccCCCHHHHhhcCC
Q 021388          138 LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP--------------N------LKYKYYPSVVELASNCH  197 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~--------------~------~~~~~~~~l~e~~~~aD  197 (313)
                      ...++.+++|||||+|.||..+|+.|...|++|.+|||+++.              .      .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            456799999999999999999999999999999999998764              0      01223457889999999


Q ss_pred             EEEEecCCChhhhcccCHHH-HhccCCCcEEEEcCC
Q 021388          198 ILVVACPLTEETRHIINREV-IDALGPKGVLINIGR  232 (313)
Q Consensus       198 vV~~~lp~~~~t~~li~~~~-l~~mk~ga~lIn~~r  232 (313)
                      +|++++|...... .+ .+. ...+ +|.++||++-
T Consensus        93 vVilavp~~~~~~-~~-~~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           93 LVVNATEGASSIA-AL-TAAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EEEECSCGGGHHH-HH-HHHCHHHH-TTSEEEECCC
T ss_pred             EEEEccCcHHHHH-HH-HHhhhhhc-CCCEEEECCC
Confidence            9999999654433 32 233 3445 8999999993

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.18  E-value=7.6e-11  Score=115.66  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=91.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------cccccCCCHHHHhhc---CCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYYPSVVELASN---CHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~  210 (313)
                      ..+|||||+|.||..+|+.|...|++|.+|||+++..          .+.....+++++++.   +|+|++++|....++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            3579999999999999999999999999999987532          233445688898877   999999999877788


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .++ +++.+.+++|.++||++.+...+.+.+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            887 6678889999999999999998999999999886655

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.16  E-value=5e-11  Score=108.79  Aligned_cols=107  Identities=20%  Similarity=0.324  Sum_probs=88.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~  217 (313)
                      ++|+|||+|.||..+++.|...|++|.+||++++..     .+.....+++++++++|+|++++|.+.+.+.++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            589999999999999999999999999999986532     1344456888999999999999997766676662  356


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+.+++|.++||++++...+.+.+.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6789999999999999888888999999876554

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.16  E-value=4.2e-11  Score=107.84  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=112.6

Q ss_pred             CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCC
Q 021388           54 TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK  133 (313)
Q Consensus        54 ~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~  133 (313)
                      +.+..+++++.+++++-++....|+|.++.    +.|-.    .|++...     .+++.++.|                
T Consensus        60 t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~~----~g~ntd~-----~g~~~~l~~----------------  110 (263)
T 2d5c_A           60 TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGRL----FGFNTDA-----PGFLEALKA----------------  110 (263)
T ss_dssp             CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHH-----HHHHHHHHH----------------
T ss_pred             cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCeE----EEeCCCH-----HHHHHHHHH----------------
Confidence            346778899999999988888999999875    33422    2344432     244444432                


Q ss_pred             CCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCCh
Q 021388          134 GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       134 ~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                          .+.++.| +++|||+|.||+.+++.|...|++|.++||+.++..      +.. ..+++++ +++|+|++++|...
T Consensus       111 ----~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~  183 (263)
T 2d5c_A          111 ----GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGL  183 (263)
T ss_dssp             ----TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTT
T ss_pred             ----hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCC
Confidence                1235788 999999999999999999999999999999864321      112 3467788 99999999999763


Q ss_pred             --hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          208 --ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       208 --~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                        .+...+.   .+.+++|.+++|++.+.. +. .+.+++++..+.
T Consensus       184 ~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~  224 (263)
T 2d5c_A          184 EDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLK  224 (263)
T ss_dssp             TCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCE
Confidence              2223443   466899999999998743 44 477777776554

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.15  E-value=6.3e-11  Score=108.20  Aligned_cols=107  Identities=15%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~  217 (313)
                      ++|||||+|.||+.+++.|...|++|.+||++++..     .+.....+++++++++|+|++++|.+.+++.++.  ++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999976532     1334456888999999999999997777777764  356


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+.+++|.++|++++|...+.+.+.+.+.+..+.
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6789999999999999877888899998875554

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.15  E-value=7.3e-11  Score=107.39  Aligned_cols=106  Identities=10%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH--HH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINR--EV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~--~~  217 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|| +++...     +.....+++++++++|+|++++|...+++.++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 665322     3344568889999999999999977666666532  45


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+.+++|.++|+++++...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6678999999999999888889999999875554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.13  E-value=1e-10  Score=106.55  Aligned_cols=104  Identities=17%  Similarity=0.239  Sum_probs=84.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH--HH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR--EV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~--~~  217 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....+++++++++|+|++++|.+.+++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            369999999999999999999999999999987532     23344568889999999999999977777766532  25


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ++.+++|.++|+++.....+.+.+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            5678999999998888877777787777654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.12  E-value=8.1e-11  Score=110.13  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=90.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhc----CCEEEEecCCChhhhcccC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASN----CHILVVACPLTEETRHIIN  214 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~----aDvV~~~lp~~~~t~~li~  214 (313)
                      -++|||||+|.||.++|+.|+..|++|++||++++..     .+.....++++++++    +|+|++|+|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            3579999999999999999999999999999987532     233335678877764    7999999994 4556665 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE-EecCCCCCC-CC---CCcccCCCceEEccCCC
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA-GLDVFENEP-HV---PEELFGLENVVLMPHVG  281 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga-~lDV~~~Ep-~~---~~~L~~~pnv~lTPH~a  281 (313)
                      +++ ..++++++++|++..+....+++.+.+.  ..... .--++..|- -+   ...|++-.++++||+-.
T Consensus        86 ~~l-~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~  154 (341)
T 3ktd_A           86 DAV-HTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL  154 (341)
T ss_dssp             HHH-HHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred             HHH-HccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence            344 3358999999998776544444444432  12211 123444441 11   13588888899999744

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.11  E-value=1.5e-10  Score=106.59  Aligned_cols=107  Identities=16%  Similarity=0.281  Sum_probs=87.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH--HH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINR--EV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~--~~  217 (313)
                      ++|||||+|.||+.+|+.|...|++|.+||++++...     +.....+++++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999999876432     3334567889899999999999976666666532  24


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ++.++++.++||++++.....+.+.+.+......
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            5778999999999998887888899988765554

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.10  E-value=1.2e-10  Score=105.54  Aligned_cols=104  Identities=20%  Similarity=0.251  Sum_probs=85.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      ++|||||+|.||..+|+.|.. |++|.+||++++...     +..... ++++++++|+|++++|....+..++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 999999999875321     222233 6778889999999999766666665 56667


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+++|.++|+++.+...+.+.+.+.+.+..+.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  110 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT  110 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            89999999999999888889999999876544

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.09  E-value=1.2e-10  Score=113.55  Aligned_cols=106  Identities=16%  Similarity=0.277  Sum_probs=89.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccccCCCHHHHhhc---CCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYKYYPSVVELASN---CHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~l  212 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++...         +.....+++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            5799999999999999999999999999999865311         33345688898876   99999999987777777


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      + +++.+.+++|.++|+++.+...+.+.+.+.+.+..+.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            7 5677889999999999999888888899888876655

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.08  E-value=2.2e-10  Score=112.05  Aligned_cols=106  Identities=15%  Similarity=0.184  Sum_probs=88.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------cccccCCCHHHHhh---cCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYYPSVVELAS---NCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~e~~~---~aDvV~~~lp~~~~t~~  211 (313)
                      ++|||||+|.||+.+|..|...|++|.+|||+++..          .+.....+++++++   ++|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            479999999999999999999999999999987531          22334568888874   89999999998777777


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ++ +++.+.+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            77 5677889999999999999988888888888876555

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.07  E-value=1.6e-10  Score=112.48  Aligned_cols=130  Identities=10%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcc------------------------ccccCCCHHHHhhcCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNL------------------------KYKYYPSVVELASNCHI  198 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~------------------------~~~~~~~l~e~~~~aDv  198 (313)
                      ++|+|||+|.||..+|..|...  |++|++||++++...                        +.....++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999988  899999998764211                        12223577888999999


Q ss_pred             EEEecCCChhhhccc-------------CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec---CCCCCC
Q 021388          199 LVVACPLTEETRHII-------------NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD---VFENEP  262 (313)
Q Consensus       199 V~~~lp~~~~t~~li-------------~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD---V~~~Ep  262 (313)
                      |++|+|.....+.++             .++..+.+++|+++||.|+..+-..+.+.+.+.+....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            999998654433211             23466778999999999999988888899999876432  233   356666


Q ss_pred             CCCC----cccCCCceEE
Q 021388          263 HVPE----ELFGLENVVL  276 (313)
Q Consensus       263 ~~~~----~L~~~pnv~l  276 (313)
                      ..+.    .+...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            5443    2556677764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.06  E-value=7.8e-10  Score=99.89  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=94.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KY--KYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ++|+|||+|.||+.+++.|...|++|.+||++++...     +.  ....+++++ +++|+|++++|. ..+..++ ++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            4799999999999999999999999999999865321     22  124567788 899999999993 3445554 456


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCC---CCCC-CcccCCCceEEccCCCCCcHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE---PHVP-EELFGLENVVLMPHVGSGTVETRKT  290 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~E---p~~~-~~L~~~pnv~lTPH~a~~t~~~~~~  290 (313)
                      ...+++++++||++..+....+.+.+.+.  ++.+ ..-++..+   |... ..++.-+.++++|+-++ +.+..+.
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~-~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~~~  150 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIG-GHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLAC  150 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEE-EEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHHH
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEee-cCcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHHHH
Confidence            67789999999998876666666655543  3322 22333222   2111 14566678899997543 4444443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.04  E-value=2.8e-10  Score=111.22  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=88.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------c-------cccCCCHHHHhhc---CCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------K-------YKYYPSVVELASN---CHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~-------~~~~~~l~e~~~~---aDvV~~~lp~~~~  208 (313)
                      ++|||||+|.||+.+|..|...|++|.+|||+++...      +       .....+++++++.   +|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            3699999999999999999999999999999764211      2       2345688888774   9999999998777


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ++.++ +++.+.+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            77777 5677889999999999999888888999999876655

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.04  E-value=5.4e-10  Score=108.47  Aligned_cols=142  Identities=17%  Similarity=0.190  Sum_probs=99.4

Q ss_pred             EcCcCCCcCC-hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEc
Q 021388           73 SFSVGLDKVD-MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIG  151 (313)
Q Consensus        73 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG  151 (313)
                      -+++|+..+. +.+.....|++.|+.+...++.-+...+.--++...+      .+.         .+..+.||+++|+|
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi------~r~---------tg~~L~GKtVvVtG  272 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGL------MRA---------TDVMIAGKVAVVAG  272 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH------HHH---------HCCCCTTCEEEEEC
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHHHH------HHH---------cCCcccCCEEEEEC
Confidence            3467776652 2233356799999987555542222222111111111      010         23458999999999


Q ss_pred             CChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcE
Q 021388          152 LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV  226 (313)
Q Consensus       152 ~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~  226 (313)
                      +|.||+.+|++|+++|++|+++|+++....     ++ ...++++++..+|+|+.+..    +.++++.+.+..||++++
T Consensus       273 aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~-dv~~lee~~~~aDvVi~atG----~~~vl~~e~l~~mk~gai  347 (488)
T 3ond_A          273 YGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL-QVLTLEDVVSEADIFVTTTG----NKDIIMLDHMKKMKNNAI  347 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGTTTTCSEEEECSS----CSCSBCHHHHTTSCTTEE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC-ccCCHHHHHHhcCEEEeCCC----ChhhhhHHHHHhcCCCeE
Confidence            999999999999999999999998764321     22 24578889999999987643    567888999999999999


Q ss_pred             EEEcCCCc
Q 021388          227 LINIGRGP  234 (313)
Q Consensus       227 lIn~~rg~  234 (313)
                      ++|+|++.
T Consensus       348 VvNaG~~~  355 (488)
T 3ond_A          348 VCNIGHFD  355 (488)
T ss_dssp             EEESSSTT
T ss_pred             EEEcCCCC
Confidence            99999983

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.01  E-value=7.5e-10  Score=101.42  Aligned_cols=137  Identities=17%  Similarity=0.149  Sum_probs=91.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------ccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------KYKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      -..|+|||||+|.||..||+.+. .|++|.+||++++...            +.....++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            56789999999999999999999 9999999999875321            2223456766 88999999999999887


Q ss_pred             hcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH
Q 021388          210 RHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR  288 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~  288 (313)
                      +..+-.+ +..+ +++++ .|+|..++   ..+.+.+. ...+..++--|.  |.     ...+-+.++|+-. .+++..
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~~-t~~~~~  153 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISRF-TDSKTV  153 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECTT-CCHHHH
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCCC-CCHHHH
Confidence            7666444 5666 99998 48877554   34444342 222233444444  32     2356677777532 344555


Q ss_pred             HHHHHH
Q 021388          289 KTMADL  294 (313)
Q Consensus       289 ~~~~~~  294 (313)
                      +++...
T Consensus       154 ~~~~~l  159 (293)
T 1zej_A          154 AFVEGF  159 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.01  E-value=9e-10  Score=105.93  Aligned_cols=112  Identities=13%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             cccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----------------------ccccCCCHHHHhh
Q 021388          138 LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----------------------KYKYYPSVVELAS  194 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----------------------~~~~~~~l~e~~~  194 (313)
                      ++++..-++|+|||+|.||..+|..|.. |++|++||++++...                       ......++++.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4566677899999999999999999988 999999999865211                       1223467889999


Q ss_pred             cCCEEEEecCCChhh-------hccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          195 NCHILVVACPLTEET-------RHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t-------~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +||+|++++|...+.       ..+.  -+...+ +++|+++|+.|+..+-..+.+.+.+.+..+.
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~  173 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVI  173 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEe
Confidence            999999999965321       1111  245666 9999999999999999999999999876554

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.00  E-value=1.8e-09  Score=104.50  Aligned_cols=177  Identities=16%  Similarity=0.147  Sum_probs=111.8

Q ss_pred             CCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC----cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE
Q 021388           96 TPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD----YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN  171 (313)
Q Consensus        96 ~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~----~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~  171 (313)
                      ..|-|-..|.|.+.++++..-|.         .++|...+    +.....-.=++|||||+|.||..||..+...|++|.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~   81 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF   81 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             ccccchhhhhHHHHHHHHhHHHh---------hccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            34555666677777777773322         34575321    111111233789999999999999999999999999


Q ss_pred             EecCCCCCc-------------ccc-------------ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388          172 YYSRTEKPN-------------LKY-------------KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG  225 (313)
Q Consensus       172 ~~~~~~~~~-------------~~~-------------~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  225 (313)
                      +||++++..             .+.             ....+++ .+++||+|+.++|...+.+..+-+++.+.+++++
T Consensus        82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a  160 (460)
T 3k6j_A           82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC  160 (460)
T ss_dssp             EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC
T ss_pred             EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC
Confidence            999987511             010             1234564 6889999999999887776655577788899999


Q ss_pred             EEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHH
Q 021388          226 VLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       226 ~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~  294 (313)
                      +|+ |+|.   +....+.+.+.. .-+..++.-|.  |..     ..+-+.++|+-. .+++..+++...
T Consensus       161 IlasnTSs---l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEIv~g~~-Ts~e~~~~~~~l  218 (460)
T 3k6j_A          161 IFGTNTSS---LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEIIYGSH-TSSQAIATAFQA  218 (460)
T ss_dssp             EEEECCSS---SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEEECCSS-CCHHHHHHHHHH
T ss_pred             EEEecCCC---hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEEEeCCC-CCHHHHHHHHHH
Confidence            996 5554   334556555543 22345666665  322     234466777532 345555554443

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.98  E-value=3.5e-10  Score=109.23  Aligned_cols=92  Identities=16%  Similarity=0.318  Sum_probs=71.8

Q ss_pred             ccccCC-CEEEEEcCChHHHHHHHHHHhC------CCCEEEecCCCCC------cccccc----CCCHHHHhhcCCEEEE
Q 021388          139 TTKFTG-KTVGIIGLGRIGMAVAKRAEAF------SCPINYYSRTEKP------NLKYKY----YPSVVELASNCHILVV  201 (313)
Q Consensus       139 ~~~l~g-~~igiiG~G~iG~~iA~~l~~~------G~~V~~~~~~~~~------~~~~~~----~~~l~e~~~~aDvV~~  201 (313)
                      ...|.| ++|||||+|+||+++|+.|+..      |++|++.++....      ..++..    ..++.+++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            346999 9999999999999999999988      9998866554322      123332    2578999999999999


Q ss_pred             ecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          202 ACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       202 ~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ++|..... .++. +.++.||+|++ |-.+-|
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            99976554 4664 78999999999 466666

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.97  E-value=4.6e-10  Score=104.86  Aligned_cols=130  Identities=20%  Similarity=0.176  Sum_probs=90.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      .+.+++|||||+|.||+++|+.|+..|++|.+++++....      .+.... ++++++++||+|++++|... ...++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            5788999999999999999999999999999999986531      133323 78899999999999999543 355554


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC----cccC---CCceEEccCCC
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE----ELFG---LENVVLMPHVG  281 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~----~L~~---~pnv~lTPH~a  281 (313)
                      ++..+.+++|+++++++ |  +..  ..+.+.    ....+||+...|..+.    .+++   -.++++|||..
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            36677899999999874 2  222  112111    1223455555564332    2444   56788999854

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.97  E-value=5.8e-10  Score=99.94  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCC--CCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT--EKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~--~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ++|||||+|.||..+|+.|...|++|++||+.  ++..     .+..  .+++++++++|+|++++|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            47999999999999999999999999999883  2211     1222  56788899999999999976555544  566


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ++.+++  ++||++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677776  99999988887888888888664

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.97  E-value=1.2e-09  Score=95.14  Aligned_cols=80  Identities=19%  Similarity=0.376  Sum_probs=63.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      .++.+++|+|||+|.||..+|+.|...|++|.+|||+++             .++++|+|++++| +..++.++ ++..+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~-~~l~~   79 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALA-KQYAT   79 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHH-HHTHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHH-HHHHH
Confidence            358889999999999999999999999999999998764             4578999999999 55666665 34556


Q ss_pred             ccCCCcEEEEcCCCcc
Q 021388          220 ALGPKGVLINIGRGPH  235 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~  235 (313)
                      .++ ++++|++++|-.
T Consensus        80 ~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           80 QLK-GKIVVDITNPLN   94 (209)
T ss_dssp             HHT-TSEEEECCCCBC
T ss_pred             hcC-CCEEEEECCCCC
Confidence            677 999999999754

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.47  E-value=1e-10  Score=101.50  Aligned_cols=90  Identities=18%  Similarity=0.204  Sum_probs=71.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.+++|||||+|+||+.+|+.|...|++|.+|+|+++..    .+.... ++.++++++|+|++++|.. .+..++  + 
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--~-   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--E-   91 (201)
Confidence            677899999999999999999999999999999876521    112222 6778889999999999964 566665  2 


Q ss_pred             HhccCCCcEEEEcCCCccc
Q 021388          218 IDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~v  236 (313)
                      +..+++++++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            4556789999999999754

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.92  E-value=7.6e-10  Score=99.34  Aligned_cols=98  Identities=13%  Similarity=0.274  Sum_probs=75.9

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ..++.+++|||||+|.||+.+++.+...|++ |.+||++++...      +.....+++++++++|+|++++|.. ....
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHH
Confidence            3446678999999999999999999999999 899999865321      3334567888889999999999954 3344


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccH
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                      ++ ++..+.+++++++|+++.|...+.
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            44 456667889999999999876543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.89  E-value=8e-09  Score=94.59  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=73.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c------------------cccCCCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K------------------YKYYPSVV  190 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  190 (313)
                      ++|+|||+|.||..+|..+...|++|.+||++++...                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999864211                1                  11245777


Q ss_pred             HHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       191 e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      +.+++||+|++++|...+.+..+-+++.+.++++++++..+.+  +....+.+.+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~  149 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATT  149 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcC
Confidence            7899999999999977655444435566678899998855444  33445555543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.89  E-value=2.5e-09  Score=96.97  Aligned_cols=165  Identities=17%  Similarity=0.202  Sum_probs=112.0

Q ss_pred             CceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHH
Q 021388           45 NIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR  124 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~  124 (313)
                      +.+++.+.  .|..+++++.++.+.-.+....++|.++.    +.|-.    .|+|....     +++.++.+       
T Consensus        65 ~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~~~~l~~-------  122 (275)
T 2hk9_A           65 KVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GFLKSLKS-------  122 (275)
T ss_dssp             TCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HHHHHHHH-------
T ss_pred             CCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HHHHHHHH-------
Confidence            56677663  45667788888888777777788887754    34422    23444322     44444422       


Q ss_pred             HHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHHhhcCCE
Q 021388          125 YVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVELASNCHI  198 (313)
Q Consensus       125 ~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDv  198 (313)
                                   .+.++.|++++|||.|.||+++++.|...|++|.++||+.++..      +.....++.++++++|+
T Consensus       123 -------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDi  189 (275)
T 2hk9_A          123 -------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQV  189 (275)
T ss_dssp             -------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSE
T ss_pred             -------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCE
Confidence                         02247789999999999999999999999999999999864321      22233478888899999


Q ss_pred             EEEecCCChh--hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          199 LVVACPLTEE--TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       199 V~~~lp~~~~--t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      |++++|....  +...++   ++.+++|.+++|++.   .. ..+.+..++..+.
T Consensus       190 Vi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~-t~ll~~a~~~g~~  237 (275)
T 2hk9_A          190 IVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KE-TKLLKKAKEKGAK  237 (275)
T ss_dssp             EEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SC-CHHHHHHHHTTCE
T ss_pred             EEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---Ch-HHHHHHHHHCcCE
Confidence            9999996642  223343   456899999999998   23 3355555554444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.86  E-value=2.5e-08  Score=89.04  Aligned_cols=99  Identities=25%  Similarity=0.420  Sum_probs=72.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      .++|||||+|.||+.+|+.|...|    ++|.+|||+++. .+.....+..++++++|+|++++| ......++ .+..+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~-~~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVL-NNIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHH-HHSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHH-HHHHH
Confidence            458999999999999999999888    689999998765 455556688899999999999999 34455554 34555


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      .++ +..+|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            664 4555544444  3345666666553

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.86  E-value=7.4e-09  Score=97.53  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHHhh-cCCEEEEecCCChhhhccc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVELAS-NCHILVVACPLTEETRHII  213 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li  213 (313)
                      ++.|++|+|+|+|+||+.+|+.|..+|++|+++|++.+...      +.. ..+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence            59999999999999999999999999999999998764321      222 224556655 899998764     56688


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +.+.++.|+ ..++++.+++.+.+++ ..+.|+++++.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            888888884 6789999999988766 55677777764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.85  E-value=7.9e-09  Score=84.22  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=82.4

Q ss_pred             cCCCEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          142 FTGKTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       142 l~g~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.-++|+|||.    |.||..+++.|+..|++|+.+++..+...+...+.+++|+....|++++++| .+....++ ++.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~-~~~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA-KEA   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH-HHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH-HHH
Confidence            45678999999    9999999999999999999999887655566677889999999999999999 46666665 334


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+ +..++++++++.    ..+++.+++++..+.
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 667788888754    268888888888777

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.84  E-value=4.5e-09  Score=93.51  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=75.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ++|||||+|+||+.+++.|...|+    +|.+|||+++..      .+.....+.+++++++|+|++++|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            589999999999999999999998    999999987532      1344567889999999999999973 3344454 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ++....++++.++|.+..|  +..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~g--i~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAG--KSIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCC--SCHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCC--CCHHHHHHHhCC
Confidence            5566778899999976655  345667666654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.84  E-value=8.8e-09  Score=99.79  Aligned_cols=102  Identities=12%  Similarity=0.185  Sum_probs=80.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV  199 (313)
                      ++|+|||+|.||..+|..|...|++|.+||++++...                        + .....++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            6899999999999999999999999999999864210                        0 12346788889999999


Q ss_pred             EEecCCCh---------hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          200 VVACPLTE---------ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       200 ~~~lp~~~---------~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      ++|+|...         ....++ ++..+.+++|.++|+.+...+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998653         333333 567778999999999998777777777777765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.84  E-value=1.4e-08  Score=97.97  Aligned_cols=102  Identities=10%  Similarity=0.070  Sum_probs=79.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------------------cc-cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------------------LK-YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------------------~~-~~~~~~l~e~~~~aDvV  199 (313)
                      ++|+|||+|.||..+|..|...|++|.+||++++..                        .+ .....++++.+++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            479999999999999999999999999999876421                        11 22345778888999999


Q ss_pred             EEecCCChh---------hhcccCHHHHhccCC---CcEEEEcCCCcccc-HHHHHHHHHh
Q 021388          200 VVACPLTEE---------TRHIINREVIDALGP---KGVLINIGRGPHVD-ERELVSALVE  247 (313)
Q Consensus       200 ~~~lp~~~~---------t~~li~~~~l~~mk~---ga~lIn~~rg~~vd-~~al~~al~~  247 (313)
                      ++|+|...+         ....+ ++..+.+++   ++++|+.|+..+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999996554         33333 556667888   99999999877666 6777777776

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.84  E-value=9.8e-09  Score=95.06  Aligned_cols=102  Identities=21%  Similarity=0.270  Sum_probs=78.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCC--Cc-----cccccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEK--PN-----LKYKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~--~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      ...++|||||+|.||..+|..|...|    ++|.+|+|+++  ..     .+.....+..++++++|+|++++| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            44568999999999999999999999    79999999874  21     133444578889999999999999 45555


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      .++ .+....+++++++|+++.|-  ..+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            555 45666788999999998764  34567677765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.83  E-value=5.8e-08  Score=91.37  Aligned_cols=210  Identities=10%  Similarity=0.057  Sum_probs=129.3

Q ss_pred             CChhHHHHHHhcCcEEEeecCC------ChHHHH----------HhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcC
Q 021388           12 MNTYLEQELERRFNLFKFWTVS------DKTQFL----------KAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFS   75 (313)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~   75 (313)
                      ++|...+.|.+....+......      ..++..          .+.+ ++|+|+.. ..+...+.....+++.++....
T Consensus        18 ~~P~~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~-~ad~i~~v-ksP~~~~~~~~~~g~~~~~y~~   95 (361)
T 1pjc_A           18 LSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKV-KEPLPAEYDLMQKDQLLFTYLH   95 (361)
T ss_dssp             CCHHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECS-SCCCGGGGGGCCTTCEEEECCC
T ss_pred             cCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHh-cCCeEEEE-CCCCHHHHHhhcCCCEEEEEec
Confidence            6788888887763333332211      112221          1223 68987763 3444444333345666666666


Q ss_pred             cCCCcCChhhhhhcCcEEEcC---CCCC-----hHHHHHHHH--HHHHHHHhchhHHHHHHhcC--CCCCCCcccccccC
Q 021388           76 VGLDKVDMVKCKEKGVRVTNT---PDVL-----TDDVADLAI--GLMLAVLRRLCESDRYVRSG--KWKKGDYKLTTKFT  143 (313)
Q Consensus        76 ~G~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~al--~~~L~~~r~~~~~~~~~~~~--~w~~~~~~~~~~l~  143 (313)
                      ..++.-.++++.+.|+...|.   |...     -.+++|.+-  +.++.... +..    ...|  .+.. .  . ..+.
T Consensus        96 ~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n-t~~----~~~g~G~~l~-~--l-~~l~  166 (361)
T 1pjc_A           96 LAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF-LER----QQGGRGVLLG-G--V-PGVK  166 (361)
T ss_dssp             GGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH-TSG----GGTSCCCCTT-C--B-TTBC
T ss_pred             cccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH-Hhh----ccCCCceecc-C--C-CCCC
Confidence            666654466777889888753   4321     245555544  33443322 211    1112  1111 1  1 2477


Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc-------CCCHHHHhhcCCEEEEecCCCh-hhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY-------YPSVVELASNCHILVVACPLTE-ETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~-------~~~l~e~~~~aDvV~~~lp~~~-~t~  210 (313)
                      ++++.|+|.|.+|+.+++.++.+|++|+++|+++++..     +...       ..++.+.+..+|+|+.+++... .+.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~  246 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAP  246 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCC
Confidence            89999999999999999999999999999999865321     1111       1245567789999999987533 234


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .++.++.++.|++|.+++|++-
T Consensus       247 ~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          247 ILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCBCHHHHTTSCTTCEEEETTC
T ss_pred             eecCHHHHhhCCCCCEEEEEec
Confidence            5567888999999999999984

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.82  E-value=1.9e-08  Score=97.32  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----c---------------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----K---------------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~---------------------~~~~~~l~e~~~~aDvV  199 (313)
                      -+|+|||+|.||..+|..|...|++|++||+++++..    +                     .....++.+.+++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            4799999999999999999999999999999876311    1                     12346788899999999


Q ss_pred             EEecCCChh----------hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          200 VVACPLTEE----------TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       200 ~~~lp~~~~----------t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ++|+|...+          .+..+ ++..+.+++|.++|+.|+..+-..+.+.+.+.+.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999985532          33333 5677889999999999988887888888888764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.81  E-value=1.9e-08  Score=91.42  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=77.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC---CEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC---PINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~---~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      .++|||||+|+||..+++.+...|+   +|.+|||+++..      .+.....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999999998   899999987632      1344456888999999999999973 3344444 


Q ss_pred             HHHHhc-cCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          215 REVIDA-LGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       215 ~~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +++... +++++++|++.-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            455555 78888999887663  45778788765

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.77  E-value=5.7e-09  Score=85.08  Aligned_cols=85  Identities=18%  Similarity=0.299  Sum_probs=68.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cc--ccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KY--KYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +++++|||.|.||+.+++.|+..|++|.+++|+++...      +.  ....+++++++++|+|+.++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            88999999999999999999999999999999875321      11  23567889999999999999865   234443


Q ss_pred             HHHhccCCCcEEEEcCCCc
Q 021388          216 EVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~  234 (313)
                         ..+++|.+++|++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4578899999998754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.76  E-value=9.6e-09  Score=89.66  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      .+++|+|||+|.||+.+++.|...|++|.+++|+++...     +.... +++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            457899999999999999999999999999999765321     22222 688889999999999994 34455552   


Q ss_pred             HhccCCCcEEEEcCCCcccc
Q 021388          218 IDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd  237 (313)
                      +..+.+++++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333899999999997544

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.75  E-value=2.6e-08  Score=88.93  Aligned_cols=96  Identities=17%  Similarity=0.248  Sum_probs=74.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ++|||||+|.||+.+++.|...|.+|.+||++++...      +.....+++++++++|+|++++| +...     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            5899999999999999999999999999999865321      34445688899999999999999 3333     3445


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ..+++|.++|+...|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55778999999976643  45566666544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.75  E-value=7.7e-09  Score=95.48  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc------c--cccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL------K--YKYYPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      .+++|||||+|.||+.+++.+.. +|+ +|.+|||+++...      +  .....+++++++++|+|++++|.   ...+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence            45799999999999999999875 487 7999999875321      2  33457899999999999999984   3455


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                      +..   +.+++|.++++++....-. ..+.+.+.+...  ..+|
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             cCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            654   5789999999998776533 444444444333  3677

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.74  E-value=1.9e-08  Score=98.30  Aligned_cols=138  Identities=16%  Similarity=0.242  Sum_probs=91.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELAS  194 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~  194 (313)
                      -++|||||+|.||..||..+...|++|.+||++++...                +.             ....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            35899999999999999999999999999999875311                10             1134554 588


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCc
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLEN  273 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pn  273 (313)
                      +||+|+.++|...+.+..+-+++.+.+++++++ .|+|.-++   ..+.+.+.. .-...++..|.+-|.       .+-
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~-p~~~ig~hf~~Pa~v-------~~L  152 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKN-PERVAGLHFFNPAPV-------MKL  152 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSS-GGGEEEEEECSSTTT-------CCE
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccC-ccceEEeeecChhhh-------CCe
Confidence            999999999987766554546677889999999 57776543   455555532 223346666654443       244


Q ss_pred             eEEccCCCCCcHHHHHHHHHH
Q 021388          274 VVLMPHVGSGTVETRKTMADL  294 (313)
Q Consensus       274 v~lTPH~a~~t~~~~~~~~~~  294 (313)
                      +.+.|+-. .+.+..+.+...
T Consensus       153 vevv~g~~-Ts~e~~~~~~~l  172 (483)
T 3mog_A          153 VEVVSGLA-TAAEVVEQLCEL  172 (483)
T ss_dssp             EEEEECSS-CCHHHHHHHHHH
T ss_pred             EEEecCCC-CCHHHHHHHHHH
Confidence            56666432 344444444433

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.72  E-value=9.6e-09  Score=93.27  Aligned_cols=87  Identities=13%  Similarity=0.280  Sum_probs=69.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ++|||||+ |.||+.+|+.|...|++|.+|||+++..     .+.. ..+..++++++|+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 9999999999999999999999986532     1222 2366788899999999999543 45555 5566


Q ss_pred             hccCCCcEEEEcCCCc
Q 021388          219 DALGPKGVLINIGRGP  234 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~  234 (313)
                      +.+++++++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            7789999999998886

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.72  E-value=4e-08  Score=95.92  Aligned_cols=130  Identities=10%  Similarity=0.140  Sum_probs=88.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcc------------c------------cccCCCHHHHhhcCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNL------------K------------YKYYPSVVELASNCHI  198 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~------------~------------~~~~~~l~e~~~~aDv  198 (313)
                      ++|+|||+|.||..+|..|...  |++|++||++++...            +            .....++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999877  789999998754210            0            1223466788899999


Q ss_pred             EEEecCCChh--------------hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh-CCeeEEEec---CCCC
Q 021388          199 LVVACPLTEE--------------TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE-GRLGGAGLD---VFEN  260 (313)
Q Consensus       199 V~~~lp~~~~--------------t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~-~~l~ga~lD---V~~~  260 (313)
                      |++|+|....              ....+ ++..+.+++|+++|+.|...+-..+.+.+.+.+ .++. ...|   ++.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~-~~~d~~v~~~P  167 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNN-ENLKFQVLSNP  167 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC-----CCEEEEECC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC-cCCceEEEeCc
Confidence            9999986432              22222 456778999999999998777777888888887 4422 1222   2344


Q ss_pred             CCCCCC----cccCCCceEE
Q 021388          261 EPHVPE----ELFGLENVVL  276 (313)
Q Consensus       261 Ep~~~~----~L~~~pnv~l  276 (313)
                      |...+.    .+...+++++
T Consensus       168 e~~~~G~a~~~~~~~~~ivi  187 (481)
T 2o3j_A          168 EFLAEGTAMKDLANPDRVLI  187 (481)
T ss_dssp             CCCCTTCHHHHHHSCSCEEE
T ss_pred             ccccccchhhcccCCCEEEE
Confidence            443322    2445567665

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.72  E-value=1.8e-08  Score=82.74  Aligned_cols=101  Identities=18%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCC--CCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          144 GKTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTE--KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       144 g~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      -++|+|||+    |.+|..+++.|+..|++|+.+|+..  +...+...+.+++++....|++++++| .+....++ ++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~-~~~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVA-QEA   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHH-HHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHH-HHH
Confidence            568999999    8999999999999999999999876  555566667788898889999999999 46666666 334


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+ ...++++++.+.-    ++++.+++++..++
T Consensus        91 ~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           91 IA-IGAKTLWLQLGVI----NEQAAVLAREAGLS  119 (145)
T ss_dssp             HH-HTCCEEECCTTCC----CHHHHHHHHTTTCE
T ss_pred             HH-cCCCEEEEcCChH----HHHHHHHHHHcCCE
Confidence            44 5677888886432    78889999988887

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.69  E-value=5.4e-08  Score=94.77  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=76.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CC-CEEEecCCCC----Ccc--------------------------c-cccCCCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SC-PINYYSRTEK----PNL--------------------------K-YKYYPSVVE  191 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~-~V~~~~~~~~----~~~--------------------------~-~~~~~~l~e  191 (313)
                      ++|+|||+|.||..+|..|... |+ +|++||++++    ...                          + ....++ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            6899999999999999999999 99 9999999877    210                          0 011233 56


Q ss_pred             HhhcCCEEEEecCCCh--------hhhccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHH
Q 021388          192 LASNCHILVVACPLTE--------ETRHII--NREVIDALGPKGVLINIGRGPHVDERELVSA  244 (313)
Q Consensus       192 ~~~~aDvV~~~lp~~~--------~t~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~a  244 (313)
                      .+++||+|++|+|...        +...+.  .+...+.+++|.++|+.|+..+-..+.+.+.
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            7889999999999653        222222  2567788999999999999888888888764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.69  E-value=3.3e-08  Score=94.35  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc------------------ccCCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KY------------------KYYPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~------------------~~~~~l~e~~~~aDvV~~  201 (313)
                      ++|+|||+|.||..+|..|.. |++|++||++++...     +.                  ....++.+.++++|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999999 999999999764211     11                  223467788899999999


Q ss_pred             ecCCCh----------hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          202 ACPLTE----------ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       202 ~lp~~~----------~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      ++|...          ....++ ++..+ +++++++|+.+.-.+-..+.+.+.+.+..+
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v  136 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI  136 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence            999663          234343 45666 899999999888887778888887765533

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.64  E-value=8.1e-08  Score=93.71  Aligned_cols=103  Identities=11%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCCE
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCHI  198 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aDv  198 (313)
                      .++|+|||+|.||..+|..|...|++|++||++++..            .+             .....++++.+++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4699999999999999999999999999999875421            01             1223567788899999


Q ss_pred             EEEecCCC---------hhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          199 LVVACPLT---------EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       199 V~~~lp~~---------~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      |++|+|..         ...+.++ ++..+.+++++++|+.+...+-..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999863         3333333 556778999999999986555555666666554

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.62  E-value=1.4e-08  Score=90.66  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ++|||||+|.||+.+|+.|...| ++|.+|||+++...      +.....+.++++ ++|+|++++| ......++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            47999999999999999999889 99999999865321      333345666777 9999999999 44544443    


Q ss_pred             HhccC-CCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          218 IDALG-PKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       218 l~~mk-~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                       ..++ +++++|+++.|--  .+.+.+.+..+
T Consensus        75 -~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence             2332 2899999865533  36777777653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.61  E-value=9.6e-08  Score=92.83  Aligned_cols=111  Identities=16%  Similarity=0.161  Sum_probs=76.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-----------cccCCCHHHHhhcC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-----------YKYYPSVVELASNC  196 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-----------~~~~~~l~e~~~~a  196 (313)
                      -++|||||+|.||..+|..+...|++|.+||++++...                +           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            46899999999999999999999999999998764211                0           0112455 567899


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      |+|+.++|...+.+..+-+++.+.+++++++++. ..++ ....+.+.+... -..++...|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~~-~~~~la~~~~~~-~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSAL-NVDDIASSTDRP-QLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSSS-CHHHHHTTSSCG-GGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCCc-CHHHHHHHhcCC-cceEEeecC
Confidence            9999999976554444445667778999999873 3333 334666655422 222355555

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.61  E-value=4.5e-08  Score=84.54  Aligned_cols=112  Identities=18%  Similarity=0.205  Sum_probs=80.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc------c-----c-ccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL------K-----Y-KYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~-----~-~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ++|+|+| .|.||+.+++.|...|++|.+++|+++...      +     . ....+++++++++|+|++++|. ...+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence            4799999 999999999999999999999998764311      1     0 1134677888999999999983 33444


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCcccc------------HHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVD------------ERELVSALVEGRLGGAGLDVFENEPH  263 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd------------~~al~~al~~~~l~ga~lDV~~~Ep~  263 (313)
                      ++ ++..+.++ +.++|+++.|--.+            .+.+.+.+..  .  ..++++.+.|.
T Consensus        80 ~~-~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~--~~v~~~~~~~~  137 (212)
T 1jay_A           80 TA-RDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--E--KVVSALHTIPA  137 (212)
T ss_dssp             HH-HHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--S--CEEECCTTCCH
T ss_pred             HH-HHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--C--eEEEEccchHH
Confidence            44 33444564 99999999875432            5777777753  2  26677766653

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.61  E-value=9.6e-08  Score=84.34  Aligned_cols=99  Identities=19%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCE-EEecCCCCCccccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHHHHhccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPI-NYYSRTEKPNLKYKYYPSVVELA-SNCHILVVACPLTEETRHIINREVIDALG  222 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk  222 (313)
                      ++|||||+|.||+.+++.+...|+++ .+||++.+.. .  .+.++++++ .++|+|++++|.....     +.....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~-~--~~~~~~~l~~~~~DvVv~~~~~~~~~-----~~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE-K--MVRGIDEFLQREMDVAVEAASQQAVK-----DYAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT-T--EESSHHHHTTSCCSEEEECSCHHHHH-----HHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh-h--hcCCHHHHhcCCCCEEEECCCHHHHH-----HHHHHHHH
Confidence            37999999999999999998889997 6899875321 1  466899998 6999999999843222     22345678


Q ss_pred             CCcEEEEcCCCccccH---HHHHHHHHhCCee
Q 021388          223 PKGVLINIGRGPHVDE---RELVSALVEGRLG  251 (313)
Q Consensus       223 ~ga~lIn~~rg~~vd~---~al~~al~~~~l~  251 (313)
                      .|..+|+.+.+..-+.   +.|.++.++.+..
T Consensus        73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           73 AGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             TTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             CCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            8999999998887666   6788877765543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.61  E-value=9e-08  Score=97.76  Aligned_cols=137  Identities=17%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|||||+|.||..||..+...|++|++||++++...                +             .....++ +.+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  393 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN  393 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence            5799999999999999999999999999999865211                1             0112345 56889


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceE
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVV  275 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~  275 (313)
                      ||+|+.++|...+.+..+-+++.+.+++++++++.+.+  +....+.+.+... -...+...|.  |.     ...+.+.
T Consensus       394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~~-~~~ig~hf~~--P~-----~~~~lve  463 (715)
T 1wdk_A          394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKRP-ENFVGMHFFN--PV-----HMMPLVE  463 (715)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSCG-GGEEEEECCS--ST-----TTCCEEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcCc-cceEEEEccC--Cc-----ccCceEE
Confidence            99999999988776655546677789999999744333  2334555555321 1224555554  32     1244555


Q ss_pred             EccCCCCCcHHHHHHHHH
Q 021388          276 LMPHVGSGTVETRKTMAD  293 (313)
Q Consensus       276 lTPH~a~~t~~~~~~~~~  293 (313)
                      +.|+-. .+++..+.+..
T Consensus       464 vv~g~~-t~~e~~~~~~~  480 (715)
T 1wdk_A          464 VIRGEK-SSDLAVATTVA  480 (715)
T ss_dssp             EEECSS-CCHHHHHHHHH
T ss_pred             EEECCC-CCHHHHHHHHH
Confidence            655422 24455544443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.57  E-value=1.4e-07  Score=90.65  Aligned_cols=106  Identities=14%  Similarity=0.227  Sum_probs=77.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----c--ccCCCHHHH---------------hhcCCEEE
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----Y--KYYPSVVEL---------------ASNCHILV  200 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~--~~~~~l~e~---------------~~~aDvV~  200 (313)
                      -.|.++.|||+|.||..+|..|...|++|++||+++++...    .  .....++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            56889999999999999999999999999999998763211    0  011223332               35799999


Q ss_pred             EecCCChhhh--------ccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          201 VACPLTEETR--------HII--NREVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       201 ~~lp~~~~t~--------~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +|+|......        .+.  .+...+.|++|+++|+.|+..+-..+.+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence            9999654321        222  2567788999999999999998888888776543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.56  E-value=1.4e-07  Score=87.80  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cc--------------ccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KY--------------KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~--------------~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|+|||+|.||..+|..|...|++|.+++|+++...      +.              ....+++++++.+|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999999999999999999754211      10              134578888899999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      .... ..++ ++..+.+++++++|+. .|.......+.+.+.+.
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~~  125 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILREN  125 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHT
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHhc
Confidence            6543 4444 5667779999999998 44223444566666553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.56  E-value=1.1e-07  Score=85.56  Aligned_cols=87  Identities=11%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-------c-----cCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-------K-----YYPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-------~-----~~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      ++|+|||+|.||..+|..|...|++|.+|+|+++.....       .     ...+..+.++.+|+|++++|.. .+..+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence            479999999999999999999999999999987532110       0     0112246778999999999965 34545


Q ss_pred             cCHHHHhccCCCcEEEEcCCC
Q 021388          213 INREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg  233 (313)
                      + ++..+.+++++++|++..|
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HHHHhhCCCCCEEEEecCC
Confidence            4 5566778899999998765

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.56  E-value=9e-08  Score=89.21  Aligned_cols=90  Identities=23%  Similarity=0.284  Sum_probs=69.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCC-------CCEEEecCCCC-----Ccc-------------------ccccCCCHHHH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFS-------CPINYYSRTEK-----PNL-------------------KYKYYPSVVEL  192 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~e~  192 (313)
                      .++|+|||+|.||..+|..|...|       ++|.+|+|+++     ...                   +.....+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            358999999999999999999888       89999999875     210                   01123567888


Q ss_pred             hhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          193 ASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       193 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      ++++|+|++++|. .....++ ++..+.+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8999999999994 3444444 456667889999999988754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.56  E-value=5.8e-08  Score=91.57  Aligned_cols=88  Identities=13%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC-------CCEEEecCCCC-----Ccc-------------------ccccCCCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS-------CPINYYSRTEK-----PNL-------------------KYKYYPSVVELA  193 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~e~~  193 (313)
                      ++|+|||.|.||..+|..|...|       ++|.+|+|+++     ...                   +.....++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998888       99999998765     211                   112235677888


Q ss_pred             hcCCEEEEecCCChhhhcccCHHHHh----ccCCCcEEEEcCCCc
Q 021388          194 SNCHILVVACPLTEETRHIINREVID----ALGPKGVLINIGRGP  234 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~~~l~----~mk~ga~lIn~~rg~  234 (313)
                      +++|+|++++|. .....++ ++...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999993 4455454 34555    688899999998773

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.55  E-value=6.3e-08  Score=90.99  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------c------cccCCCHHHHhhcCCEEEEecC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------K------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .++|+|||.|.||..+|..|...|++|.+|+|+++...             +      .....++++.++.+|+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            46899999999999999999999999999999754210             0      1223578889999999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                      .. ..+.++ ++....+++++++|+++.|-..+
T Consensus       109 ~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          109 SF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             HH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             HH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            42 444444 56677889999999998876554

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.52  E-value=1.1e-07  Score=87.79  Aligned_cols=100  Identities=9%  Similarity=0.102  Sum_probs=72.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecC--CCCCc-----ccc-----------ccCC--CHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSR--TEKPN-----LKY-----------KYYP--SVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~--~~~~~-----~~~-----------~~~~--~l~e~~~~aDvV~~~lp  204 (313)
                      ++|+|||+|.||..+|..|...|++|.+|+|  +++..     .+.           ....  ++.+.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999999999999999  65321     111           1223  67788899999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCc---c-ccHHHHHHHHHh
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGP---H-VDERELVSALVE  247 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~---~-vd~~al~~al~~  247 (313)
                      .. ....++ ++..+ +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            54 444444 45566 88999999998774   1 123445566654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.52  E-value=2.2e-07  Score=94.99  Aligned_cols=136  Identities=16%  Similarity=0.130  Sum_probs=87.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|||||+|.||..+|..+...|++|++||++++...                +             .....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            5799999999999999999999999999999764211                1             0112345 56889


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh-CCeeEEEecCCCCCCCCCCcccCCCce
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE-GRLGGAGLDVFENEPHVPEELFGLENV  274 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~-~~l~ga~lDV~~~Ep~~~~~L~~~pnv  274 (313)
                      ||+|+.++|...+.+..+-+++.+.+++++++++.+.+  +....+.+.+.. .++  .+...|.  |.     ...|.+
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p~~~--iG~hf~~--P~-----~~~~lv  460 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQDRI--VGAHFFS--PA-----HIMPLL  460 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCTTTE--EEEEECS--ST-----TTCCEE
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCCCCE--EEecCCC--Cc-----ccCceE
Confidence            99999999988766555546677789999998543333  233445554432 133  3555554  22     124456


Q ss_pred             EEccCCCCCcHHHHHHHHH
Q 021388          275 VLMPHVGSGTVETRKTMAD  293 (313)
Q Consensus       275 ~lTPH~a~~t~~~~~~~~~  293 (313)
                      .+.|+-. .+++..+.+..
T Consensus       461 evv~g~~-t~~e~~~~~~~  478 (725)
T 2wtb_A          461 EIVRTNH-TSAQVIVDLLD  478 (725)
T ss_dssp             EEEECSS-CCHHHHHHHHH
T ss_pred             EEEECCC-CCHHHHHHHHH
Confidence            6665422 34454444443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.51  E-value=3.5e-07  Score=82.83  Aligned_cols=81  Identities=12%  Similarity=0.245  Sum_probs=68.6

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++.+++.         .++++.+++||+|+.+++.    .+++..+.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  221 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHTTCSEEEECSSC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhhcCCEEEECCCC----CCcCCHHH
Confidence            3469999999999998 69999999999999999988642         3688999999999999983    34576654


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                         +|+|+++||++.-.+
T Consensus       222 ---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          222 ---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             ---SCTTEEEEECCCEEC
T ss_pred             ---cCCCeEEEEeccCcc
Confidence               599999999997664

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.51  E-value=2.6e-07  Score=83.71  Aligned_cols=129  Identities=16%  Similarity=0.176  Sum_probs=90.2

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++++++.         .++.+.+++||+|+.+++..    +++..+.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~p----~lI~~~~  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGKP----GFIPGDW  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCCT----TCBCTTT
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCCCc----CcCCHHH
Confidence            3469999999999997 59999999999999999987543         47899999999999999832    3676665


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG  297 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~  297 (313)
                         +|+|+++||+|.-.+-|          |++   .=||-..+      ..+. --.+||--||.-.-+..-+.+..++
T Consensus       221 ---vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~------v~~~-a~~iTPVPGGVGpmT~a~Ll~Ntv~  277 (288)
T 1b0a_A          221 ---IKEGAIVIDVGINRLEN----------GKV---VGDVVFED------AAKR-ASYITPVPGGVGPMTVATLIENTLQ  277 (288)
T ss_dssp             ---SCTTCEEEECCCEECTT----------SCE---ECSBCHHH------HHHH-CSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCccCC----------CCc---cCCcCHHH------Hhhh-ccEecCCCCCccHHHHHHHHHHHHH
Confidence               48999999999866432          443   44663111      1111 1268997777765544444444444


Q ss_pred             HHHHHH
Q 021388          298 NLEAHF  303 (313)
Q Consensus       298 nl~~~~  303 (313)
                      ..++++
T Consensus       278 aa~~~~  283 (288)
T 1b0a_A          278 ACVEYH  283 (288)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            444433

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.50  E-value=3.1e-07  Score=82.71  Aligned_cols=77  Identities=19%  Similarity=0.306  Sum_probs=66.4

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          142 FTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       142 l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      +.|+++.|||.|. +|+.+|+.|...|++|++++++         ..++++.+++||+|+.+++.    .+++..+.   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------TKDIGSMTRSSKIVVVAVGR----PGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHHSSEEEECSSC----TTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------cccHHHhhccCCEEEECCCC----CccccHhh---
Confidence            8899999999986 8999999999999999999864         24789999999999999984    34676655   


Q ss_pred             cCCCcEEEEcCCCc
Q 021388          221 LGPKGVLINIGRGP  234 (313)
Q Consensus       221 mk~ga~lIn~~rg~  234 (313)
                      +|+|+++||+|.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            59999999999765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.50  E-value=1e-07  Score=83.27  Aligned_cols=103  Identities=19%  Similarity=0.234  Sum_probs=70.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEE-ecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINY-YSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~-~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      -++|+|||+|+||..+|+.|...|++|.+ +||+++...      +.....+..+.++++|+|++++|. .....++ ++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~-~~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIV-TQ  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHH-TT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHH-HH
Confidence            36899999999999999999999999998 999876432      222223455668899999999983 2223222 11


Q ss_pred             HHhccCCCcEEEEcCCCcc------------ccHHHHHHHHHhCCe
Q 021388          217 VIDALGPKGVLINIGRGPH------------VDERELVSALVEGRL  250 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~------------vd~~al~~al~~~~l  250 (313)
                      ...  .++.++|+++-|--            ...+.+.+.+...++
T Consensus       101 l~~--~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~v  144 (220)
T 4huj_A          101 VSD--WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKV  144 (220)
T ss_dssp             CSC--CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEE
T ss_pred             hhc--cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCE
Confidence            212  35889999986541            145666666654333

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.49  E-value=4.2e-07  Score=82.32  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++.+++.         .++++.+++||+|+.+++.    .+++..+.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGK----PNFITADM  222 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHhcccCCEEEECCCC----CCCCCHHH
Confidence            3469999999999998 69999999999999999987642         3688999999999999983    34576654


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                         +|+|+++||++.-.+
T Consensus       223 ---vk~GavVIDvgi~~~  237 (285)
T 3l07_A          223 ---VKEGAVVIDVGINHV  237 (285)
T ss_dssp             ---SCTTCEEEECCCEEE
T ss_pred             ---cCCCcEEEEecccCc
Confidence               599999999997653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.49  E-value=3.4e-07  Score=83.11  Aligned_cols=106  Identities=12%  Similarity=0.139  Sum_probs=75.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc------ccCCCHHHHhhcCCEEEEecCCC--hhhhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY------KYYPSVVELASNCHILVVACPLT--EETRH  211 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~------~~~~~l~e~~~~aDvV~~~lp~~--~~t~~  211 (313)
                      .+.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++....      ....++.+.++++|+|+.++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4788999999999999999999999999 899999987653321      11234566688999999999864  22222


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+.   ...++++.+++|+.-.+.. + .+.++.++..+.
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~~  228 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGNP  228 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTCC
T ss_pred             CCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcCE
Confidence            232   3567899999999877543 3 466666665554

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.48  E-value=1.1e-07  Score=84.09  Aligned_cols=71  Identities=8%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALG  222 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk  222 (313)
                      ..++|||||+|.||.++|+.|+..|++|.+|++.             ++ +++||  ++++|.. ....++ +++...++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~   66 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFAR   66 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCC
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcC
Confidence            3468999999999999999999999999999983             12 57899  8899975 455555 56777889


Q ss_pred             CCcEEEEcC
Q 021388          223 PKGVLINIG  231 (313)
Q Consensus       223 ~ga~lIn~~  231 (313)
                      +|+++++++
T Consensus        67 ~g~ivvd~s   75 (232)
T 3dfu_A           67 RGQMFLHTS   75 (232)
T ss_dssp             TTCEEEECC
T ss_pred             CCCEEEEEC
Confidence            999999975

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.47  E-value=3.5e-07  Score=83.38  Aligned_cols=82  Identities=13%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHH--HHhhcCCEEEEecCCChhhhcccCH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV--ELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~--e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++++++..         +++  +.+++||+|+.+++.    .+++..
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------~l~l~~~~~~ADIVI~Avg~----p~~I~~  226 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------TEDMIDYLRTADIVIAAMGQ----PGYVKG  226 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------HHHHHHHHHTCSEEEECSCC----TTCBCG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------CchhhhhhccCCEEEECCCC----CCCCcH
Confidence            3469999999999988 799999999999999999987422         466  899999999999984    346766


Q ss_pred             HHHhccCCCcEEEEcCCCccc
Q 021388          216 EVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      +.   +|+|+++||++.-.+-
T Consensus       227 ~~---vk~GavVIDvgi~~~~  244 (300)
T 4a26_A          227 EW---IKEGAAVVDVGTTPVP  244 (300)
T ss_dssp             GG---SCTTCEEEECCCEEES
T ss_pred             Hh---cCCCcEEEEEeccCCc
Confidence            55   5999999999976543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.47  E-value=5.8e-07  Score=81.39  Aligned_cols=81  Identities=16%  Similarity=0.289  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++..++.         .++++.+++||+|+.+++.    .+++..+.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------RDLADHVSRADLVVVAAGK----PGLVKGEW  222 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------cCHHHHhccCCEEEECCCC----CCCCCHHH
Confidence            3569999999999987 79999999999999999987642         3688999999999999983    34676655


Q ss_pred             HhccCCCcEEEEcCCCcc
Q 021388          218 IDALGPKGVLINIGRGPH  235 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~  235 (313)
                         +|+|+++||++.-.+
T Consensus       223 ---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          223 ---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             ---SCTTCEEEECCSCSS
T ss_pred             ---cCCCeEEEEeccccc
Confidence               499999999997664

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.47  E-value=6.4e-07  Score=81.64  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.|+++.|||.|+ +|+.+|+.|...|++|+++++.         ..++.+.+++||+|+.+++.    .++|..+.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------cccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            3469999999999996 6999999999999999998754         24789999999999999984    33577665


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVL  296 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~  296 (313)
                         +|+|+++||+|.-.+-|..     -.+| ++-   =||-..+      ..+. --.+||--||.-.-+..-+.+..+
T Consensus       227 ---vk~GavVIDVgi~~~~d~~-----~~~g~klv---GDVdf~~------v~~~-a~~iTPVPGGVGpmTiamLl~Ntv  288 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVPDDK-----KPNGRKVV---GDVAYDE------AKER-ASFITPVPGGVGPMTVAMLMQSTV  288 (301)
T ss_dssp             ---SCTTCEEEECCCBC---------------CCB---CSBCHHH------HTTT-CSEECCSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCCccccc-----ccCCCeee---ccccHHH------hhhh-ceEeCCCCCCccHHHHHHHHHHHH
Confidence               5799999999987644321     1123 343   2662111      1111 126899778766555544444444


Q ss_pred             HHHHHHHc
Q 021388          297 GNLEAHFL  304 (313)
Q Consensus       297 ~nl~~~~~  304 (313)
                      +..++++.
T Consensus       289 ~aa~~~~~  296 (301)
T 1a4i_A          289 ESAKRFLE  296 (301)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            44445443

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.47  E-value=4.5e-07  Score=81.92  Aligned_cols=110  Identities=19%  Similarity=0.291  Sum_probs=82.4

Q ss_pred             ccccCCCEEEEEcCChH-HHHHHHHHHhC--CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          139 TTKFTGKTVGIIGLGRI-GMAVAKRAEAF--SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~i-G~~iA~~l~~~--G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +.++.|+++.|||.|.| |+.+|+.|...  |++|++++++.         .++.+.+++||+|+.+++..    +++..
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg~p----~~I~~  219 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVGVA----HLLTA  219 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSCCT----TCBCG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCCCC----cccCH
Confidence            34699999999999985 99999999998  89999987653         47899999999999999832    35776


Q ss_pred             HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHH
Q 021388          216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVE  286 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~  286 (313)
                      +.   +|+|+++||+|.-.+.|          |    ..=||-  |-     ..+.. -.+||--||.-.-
T Consensus       220 ~~---vk~GavVIDVgi~r~~~----------g----lvGDVd--~~-----v~~~a-~~iTPVPGGVGpm  265 (281)
T 2c2x_A          220 DM---VRPGAAVIDVGVSRTDD----------G----LVGDVH--PD-----VWELA-GHVSPNPGGVGPL  265 (281)
T ss_dssp             GG---SCTTCEEEECCEEEETT----------E----EEESBC--GG-----GGGTC-SEEECSSSSSHHH
T ss_pred             HH---cCCCcEEEEccCCCCCC----------C----ccCccc--cc-----hhhhe-eeecCCCCCccHH
Confidence            66   48999999999876443          3    355774  21     11111 2578977776553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.47  E-value=1.1e-07  Score=86.74  Aligned_cols=104  Identities=10%  Similarity=0.071  Sum_probs=73.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc------------CCCHHHHhh---cCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY------------YPSVVELAS---NCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~------------~~~l~e~~~---~aDvV~~~lp  204 (313)
                      ++|+|||+|.||..+|..|...|++|.+|+|+++...     +...            ..+..++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999999764211     1100            013334444   8999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      . .....++ ++..+.+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            4 3455454 55667788999999998753 2345666666554444

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.46  E-value=2.9e-07  Score=84.89  Aligned_cols=90  Identities=16%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             cccccCCCEEEEEcCChH-HHHHHHHHHhCCCCEEEecCCCCC------cccc--c-c-----C--CCHHHHhhcCCEEE
Q 021388          138 LTTKFTGKTVGIIGLGRI-GMAVAKRAEAFSCPINYYSRTEKP------NLKY--K-Y-----Y--PSVVELASNCHILV  200 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~i-G~~iA~~l~~~G~~V~~~~~~~~~------~~~~--~-~-----~--~~l~e~~~~aDvV~  200 (313)
                      ++.++.|+++.|||.|.| |+.+|+.|...|++|+++||+...      ....  . .     .  .++.+.+++||+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            455799999999999976 999999999999999999886321      1111  1 1     1  46888999999999


Q ss_pred             EecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          201 VACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .+++..   ..+|..+.   +|+|+++||+|..
T Consensus       251 sAtg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          251 TGVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             ECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             ECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            999742   22366655   4899999999875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.45  E-value=5e-08  Score=91.55  Aligned_cols=89  Identities=13%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------------ccccCCCHHHHhhcCCEEEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------------KYKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +|+|||+|.||..+|..|...|++|.+|+|+++...                   +.....+++++++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999998754211                   112235788888999999999994 


Q ss_pred             hhhhcccCHH----HHhccCC-CcEEEEcCCCccc
Q 021388          207 EETRHIINRE----VIDALGP-KGVLINIGRGPHV  236 (313)
Q Consensus       207 ~~t~~li~~~----~l~~mk~-ga~lIn~~rg~~v  236 (313)
                      .....++ .+    ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~-~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFF-EKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHH-HHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHH-HHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4555555 33    5566788 9999999876433

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.45  E-value=7e-06  Score=77.63  Aligned_cols=83  Identities=17%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCC---CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSC---PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~---~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ...++.|||. |..|...++.++++|+   .|.++|++.... +..    + +.+.++|+||.++........+++++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            4568999999 9999999999999998   899999875222 211    1 3466999999999986667789999999


Q ss_pred             hcc-CCCcEEEEcC
Q 021388          219 DAL-GPKGVLINIG  231 (313)
Q Consensus       219 ~~m-k~ga~lIn~~  231 (313)
                      +.| |||+++||++
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999996

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.41  E-value=1.8e-07  Score=86.85  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c-----------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K-----------YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~-----------~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      .+|+|||+|.||..+|..|...|++|.+|+|+++...     +           .....+.++ +..+|+|++++|. ..
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~   92 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QY   92 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HH
Confidence            5899999999999999999999999999999754211     1           233456778 8899999999993 44


Q ss_pred             hhcccCHHHHhccC-CCcEEEEcCCC
Q 021388          209 TRHIINREVIDALG-PKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk-~ga~lIn~~rg  233 (313)
                      +..++     ..++ +++++|+++.|
T Consensus        93 ~~~v~-----~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           93 IREHL-----LRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             HHHHH-----TTCSSCCSEEEECCCC
T ss_pred             HHHHH-----HHhCcCCCEEEEEeCC
Confidence            44443     3343 78999999976

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.40  E-value=5.9e-07  Score=82.26  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------cc---cc--CCCHHHHhhcCCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KY---KY--YPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~---~~--~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      .+.|++++|+|.|.+|++++..|...|+ +|.+++|+.++..      +.   ..  ..++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            4778999999999999999999999998 8999999864321      11   11  12455677899999999996542


Q ss_pred             hh--c-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          209 TR--H-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       209 t~--~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ..  . .+.   ...++++.+++|++-.+ ..+. |.++.++..+.
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~G~~  258 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKARGAR  258 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHHTTCE
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHHCcCE
Confidence            11  1 122   24578999999999853 3333 66666666654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.38  E-value=7.8e-07  Score=79.63  Aligned_cols=100  Identities=15%  Similarity=0.081  Sum_probs=74.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc------cccCCCHHHHhhcCCEEEEecCCChhh-hccc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK------YKYYPSVVELASNCHILVVACPLTEET-RHII  213 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~------~~~~~~l~e~~~~aDvV~~~lp~~~~t-~~li  213 (313)
                      +.| +++|||.|.+|++++..|...|+ +|.+++|+.++...      .....++.+.++++|+|++++|..-.. ...+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i  185 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV  185 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence            577 99999999999999999999999 89999998754221      112456778889999999999854211 1234


Q ss_pred             CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ..+   .++++.+++|+.-+   .++-+.++.+.|
T Consensus       186 ~~~---~l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          186 SDD---SLKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CHH---HHTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CHH---HhCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            433   35789999999988   556666666665

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.25  E-value=1e-06  Score=79.55  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=72.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccc----cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK----YYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~----~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      |+++.|+|.|.+|++++..|...|.+|.+++|+.++.....    ...+++++ .++|+|+.++|........++.+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            78999999999999999999999988999999986532110    01122332 38999999999754322345555333


Q ss_pred             -ccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          220 -ALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       220 -~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       .++++.+++|+.-.+  .+. +.++.++..+.
T Consensus       197 ~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~~  226 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF--LTP-FLSLAKELKTP  226 (269)
T ss_dssp             HHHHHCSEEEESCCSS--CCH-HHHHHHHTTCC
T ss_pred             hhCCCCCEEEEeCCCC--chH-HHHHHHHCcCE
Confidence             677899999998876  444 55555555444

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.23  E-value=3.6e-06  Score=68.47  Aligned_cols=102  Identities=21%  Similarity=0.207  Sum_probs=76.3

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCC--CCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          143 TGKTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRT--EKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       143 ~g~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      .-++|+|||.    |++|..+++.|+..|++|+..++.  .+...+...+.+++++-...|++++++|. +....++ ++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~-~~   89 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL-PE   89 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH-HH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH-HH
Confidence            3468999999    899999999999999997777766  33344556677899988899999999995 5555565 34


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ..+ ...+.++++.+..    ++++.+.+++..++
T Consensus        90 ~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           90 VLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             HHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            444 3445677665443    57888888887776

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.23  E-value=1.1e-06  Score=83.73  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC-----------CccccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK-----------PNLKYKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      -|+||+|+|||||+-|++-|.+|+..|.+|.+--|...           ...|+. ..+..|++++||+|++.+|+..+.
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~-v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE-EEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE-ecCHHHHHHhCCEEEEeCChhhHH
Confidence            38999999999999999999999999999987655211           122333 347899999999999999975444


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCC
Q 021388          210 RHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      . ++ ++..+.||+|+.+. .+.|
T Consensus       113 ~-vy-~~I~p~lk~G~~L~-faHG  133 (491)
T 3ulk_A          113 D-VV-RTVQPLMKDGAALG-YSHG  133 (491)
T ss_dssp             H-HH-HHHGGGSCTTCEEE-ESSC
T ss_pred             H-HH-HHHHhhCCCCCEEE-ecCc
Confidence            3 45 56999999999987 4565

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.22  E-value=3.1e-06  Score=81.49  Aligned_cols=133  Identities=15%  Similarity=0.170  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCH  197 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aD  197 (313)
                      +-.+|+|||+|-+|..+|..+...|++|+++|.++++.            .+             .....+.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            44699999999999999999999999999999875421            01             112457788899999


Q ss_pred             EEEEecCCChhhhcccC--------HHHHhccC---CCcEEEEcCCCccccHHHHHHH-HHhCCeeEEEec-CCCCCCCC
Q 021388          198 ILVVACPLTEETRHIIN--------REVIDALG---PKGVLINIGRGPHVDERELVSA-LVEGRLGGAGLD-VFENEPHV  264 (313)
Q Consensus       198 vV~~~lp~~~~t~~li~--------~~~l~~mk---~ga~lIn~~rg~~vd~~al~~a-l~~~~l~ga~lD-V~~~Ep~~  264 (313)
                      ++++|+|......+-.+        +...+.|+   +|.++|.-|+-.+=..+.+..- +++.. .+.-++ ++.+|-+.
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~  178 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR  178 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence            99999984322111111        23334454   6889999999888666665543 33322 211122 25677654


Q ss_pred             CC----cccCCCceEE
Q 021388          265 PE----ELFGLENVVL  276 (313)
Q Consensus       265 ~~----~L~~~pnv~l  276 (313)
                      +.    .+...++|++
T Consensus       179 eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          179 EGSALEDFFKPDRIVI  194 (444)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             CCccccccccCCcEEE
Confidence            43    3666777763

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.18  E-value=6.6e-06  Score=67.15  Aligned_cols=101  Identities=20%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          144 GKTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       144 g~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      -++|+|||.    |.+|..+++.|+..|++|+..++......+...+.+++++....|++++++|. +....++ ++..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv-~~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV-EQAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-HHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-HHHHH
Confidence            579999999    79999999999999999777777654444556677899988899999999995 4445555 33333


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       ...+.++++.+.    .++++.+++++..+.
T Consensus       100 -~gi~~i~~~~g~----~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A          100 -KGAKVVWFQYNT----YNREASKKADEAGLI  126 (144)
T ss_dssp             -HTCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             -cCCCEEEECCCc----hHHHHHHHHHHcCCE
Confidence             334566665432    378888888888776

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.15  E-value=4.7e-07  Score=81.76  Aligned_cols=82  Identities=13%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCE-EEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPI-NYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V-~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ++|||||+|+||+.+++.|... ++| .+||++++...      +. ...+++++++++|+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999877 888 58998765321      22 34567778889999999999543 2     333


Q ss_pred             Hhcc-CCCcEEEEcCCCc
Q 021388          218 IDAL-GPKGVLINIGRGP  234 (313)
Q Consensus       218 l~~m-k~ga~lIn~~rg~  234 (313)
                      +..+ +++.++||++.+.
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            3334 6889999998653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.12  E-value=5.6e-06  Score=76.22  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=75.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---cc---------------cccCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---LK---------------YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---~~---------------~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.||..+|..|...|.+|.+|+|+....   .+               .....+.+++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            589999999999999999999999999999875210   01               011245666666899999999955


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeE
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGG  252 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~g  252 (313)
                      . +..++ +.+...+++++++|.+..|= -..+.+.+.+...++.+
T Consensus        83 ~-~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl~  125 (320)
T 3i83_A           83 E-GADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVIS  125 (320)
T ss_dssp             T-TCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEEE
T ss_pred             C-hHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEEE
Confidence            4 33333 55666788899999988762 23466777776655543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.12  E-value=1.3e-05  Score=65.74  Aligned_cols=94  Identities=15%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cccc----CCC---HHHH-hhcCCEEEEecC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKY----YPS---VVEL-ASNCHILVVACP  204 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~----~~~---l~e~-~~~aDvV~~~lp  204 (313)
                      +....+++|.|+|+|.+|+.+++.|+..|++|.+++++++...      +...    ..+   +.+. +..+|+|+.++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            4457889999999999999999999999999999998765321      2111    112   2222 568999999998


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ....+..+  ...+..+.+...+|-..++.
T Consensus        94 ~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           94 DDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             CcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            54433222  33445445556666655554

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.12  E-value=9.4e-07  Score=80.65  Aligned_cols=100  Identities=10%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-----C-CCEEEecCCCCC-----c-cccccCC-------------CHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-----S-CPINYYSRTEKP-----N-LKYKYYP-------------SVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-----G-~~V~~~~~~~~~-----~-~~~~~~~-------------~l~e~~~~aDvV  199 (313)
                      ++|+|||+|.||..+|..|...     | ++|.+|+| ++.     . .+.....             +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            4899999999999999999988     9 99999998 431     1 2221111             223457889999


Q ss_pred             EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccH-HHHHHHHHhCC
Q 021388          200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE-RELVSALVEGR  249 (313)
Q Consensus       200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~-~al~~al~~~~  249 (313)
                      ++++|... ...++ ++..+.+++++++|++..|  ++. +.+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            99999654 34444 4555667889999998776  343 55666564433

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.11  E-value=6.1e-06  Score=76.20  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c--------------cccCCCHHHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K--------------YKYYPSVVEL  192 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~--------------~~~~~~l~e~  192 (313)
                      .-++|+|||.|.||+.+|..+...|++|..||++++...                +              .....++++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            346899999999999999999999999999998764200                0              0123578889


Q ss_pred             hhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          193 ASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       193 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      +++||+|+=++|-+-+.+.-+-+++=+.++++++|-..+.+  +....+.+.+.
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~  136 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLA  136 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCT
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhcc
Confidence            99999999999988887766656677778999998544433  34456666553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.09  E-value=2.6e-06  Score=78.95  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----cccc-------------ccCCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKY-------------KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----~~~~-------------~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      .++|+|||.|.||..+|..|...|++|.+|+|....    ..+.             ....+.++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            368999999999999999999999999999985321    0111             11246666 5889999999995 


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCc------------------cccHHHHHHHHHhCCeeE
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGP------------------HVDERELVSALVEGRLGG  252 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~------------------~vd~~al~~al~~~~l~g  252 (313)
                      .++..++ ++....+++++++|.+..|=                  +-.++.+.+.+...++.+
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~  143 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG  143 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE
Confidence            3455444 44555678899999998882                  223456677776556543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.08  E-value=3e-06  Score=78.05  Aligned_cols=99  Identities=16%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cc-------------cccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LK-------------YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~-------------~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      ...++|+|||.|.||..+|..|...|++|..| ++++..     .+             .....+.++ +..+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            45679999999999999999999999999999 654311     01             011234544 57899999999


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCCCccccH-HHHHHHHH
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGRGPHVDE-RELVSALV  246 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~-~al~~al~  246 (313)
                      |.. ++..++ ++....+++++++|.+..|  ++. +.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nG--i~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNG--VENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSS--SSHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCC--CCcHHHHHHHcC
Confidence            954 455444 5566678899999999777  343 45555554

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.08  E-value=7.3e-06  Score=76.71  Aligned_cols=87  Identities=20%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ..++++|||.|.||+.+++.+. ..+. +|.+|||++++..          +  .....+++++++++|+|++|+|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            4579999999999999998875 3454 6999999865311          2  2335689999999999999999752 


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ...++..   +.+++|..++++|..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            2345543   467899999999863

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.07  E-value=1.6e-05  Score=73.28  Aligned_cols=84  Identities=20%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc---------cc--ccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL---------KY--KYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      ..++++|||.|.||+.+++.+.. ++. +|.+|||+ +...         +.  ... +++++++++|+|++|+|..   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence            35799999999999999999875 454 69999999 3211         11  234 8999999999999999864   


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCc
Q 021388          210 RHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..++..   ..+++|+.++++|...
T Consensus       195 ~pvl~~---~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          195 TPLFAG---QALRAGAFVGAIGSSL  216 (313)
T ss_dssp             SCSSCG---GGCCTTCEEEECCCSS
T ss_pred             CcccCH---HHcCCCcEEEECCCCC
Confidence            345543   4589999999998643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.06  E-value=1.5e-05  Score=73.00  Aligned_cols=104  Identities=13%  Similarity=0.200  Sum_probs=74.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---ccc--------------ccCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---LKY--------------KYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---~~~--------------~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|||.|.||..+|..|...|.+|.+|+|+....   .+.              ....+.++ +..+|+|++++|...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~~   81 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTFA   81 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCCC
Confidence            579999999999999999999999999999875210   010              01234544 678999999998432


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcCCCcccc-HHHHHHHHHhCCeeEE
Q 021388          208 ETRHIINREVIDALGPKGVLINIGRGPHVD-ERELVSALVEGRLGGA  253 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~vd-~~al~~al~~~~l~ga  253 (313)
                       +..++ +++...+++++++|.+.-|  ++ .+.+.+.+...++.++
T Consensus        82 -~~~~l-~~l~~~l~~~~~iv~l~nG--i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           82 -NSRYE-ELIRPLVEEGTQILTLQNG--LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             -GGGHH-HHHGGGCCTTCEEEECCSS--SSHHHHHHHHTCGGGEEEE
T ss_pred             -cHHHH-HHHHhhcCCCCEEEEecCC--CCcHHHHHHHCCCCcEEEE
Confidence             33333 5566678899999998877  43 5667777766665543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.04  E-value=2.7e-06  Score=71.59  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=63.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhC-CCCEEEecCCCCCc-----ccccc----CCC---HHHH--hhcCCEEEEecC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAF-SCPINYYSRTEKPN-----LKYKY----YPS---VVEL--ASNCHILVVACP  204 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~-----~~~~~----~~~---l~e~--~~~aDvV~~~lp  204 (313)
                      .++.+++++|+|+|.+|+.+|+.|+.. |++|.++|++++..     .+...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999999 99999999876532     12211    122   3333  668999999998


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ..+.+..++  ..+..+.+...+|....
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            655544432  35566666666665433

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.02  E-value=2.3e-05  Score=73.76  Aligned_cols=92  Identities=15%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC----CCCc---c------------ccccCCCHHHHhhcCCE
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT----EKPN---L------------KYKYYPSVVELASNCHI  198 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~----~~~~---~------------~~~~~~~l~e~~~~aDv  198 (313)
                      +.++.+.+|.|+|.|.+|..+|+.|.+.|. +|+++|++    ....   .            ......++.|.++.+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            346888999999999999999999999999 69999987    4321   1            01124579999999999


Q ss_pred             EEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          199 LVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       199 V~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      ++-+..     .++++++.++.|+++++++.+++...
T Consensus       267 lIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          267 FIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            877632     37899999999999999999997553

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.93  E-value=2.3e-05  Score=62.15  Aligned_cols=85  Identities=15%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cccc----CCCHHHH----hhcCCEEEEecCCChhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKY----YPSVVEL----ASNCHILVVACPLTEET  209 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~----~~~l~e~----~~~aDvV~~~lp~~~~t  209 (313)
                      +++|+|+|+|.+|+.+++.|...|++|.++|++++...      +...    ..+.+.+    +.++|+|++++|....+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57899999999999999999999999999998764211      2111    1222222    56899999999864333


Q ss_pred             hcccCHHHHhccCCCcEEEEc
Q 021388          210 RHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~  230 (313)
                      .  .-......++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223455667777666544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.91  E-value=9.1e-06  Score=65.57  Aligned_cols=85  Identities=15%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc----CCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY----YPS---VVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      ..++.|+|+|.+|+.+|+.|+..|++|.++|++++..     .+...    ..+   ++++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            3579999999999999999999999999999987532     12211    122   2222 568999999999766554


Q ss_pred             cccCHHHHhccCCCcEEEEc
Q 021388          211 HIINREVIDALGPKGVLINI  230 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~  230 (313)
                      .+  ...+..+.++..+|-.
T Consensus        87 ~~--~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           87 EI--VASARAKNPDIEIIAR  104 (140)
T ss_dssp             HH--HHHHHHHCSSSEEEEE
T ss_pred             HH--HHHHHHHCCCCeEEEE
Confidence            33  2345556666666543

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.90  E-value=4.8e-05  Score=69.17  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=65.2

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-++ +|+++|..|...|++|+.+....         .++.+.+++||+|+.++.-    .+++..+.
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T---------~dl~~~~~~ADIvV~A~G~----p~~i~~d~  240 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT---------QNLPELVKQADIIVGAVGK----AELIQKDW  240 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHHTCSEEEECSCS----TTCBCGGG
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC---------CCHHHHhhcCCeEEeccCC----CCcccccc
Confidence            4579999999999887 59999999999999998876432         3689999999999998862    35676654


Q ss_pred             HhccCCCcEEEEcCCC
Q 021388          218 IDALGPKGVLINIGRG  233 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg  233 (313)
                         .|+|+++||+|--
T Consensus       241 ---vk~GavVIDVGin  253 (303)
T 4b4u_A          241 ---IKQGAVVVDAGFH  253 (303)
T ss_dssp             ---SCTTCEEEECCCB
T ss_pred             ---ccCCCEEEEecee
Confidence               6899999999854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.88  E-value=1.4e-05  Score=73.51  Aligned_cols=108  Identities=14%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .++|+|||.|.||..+|..+...|+ +|..||++++...+                 .....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998888 89999998753211                 0112456 678999999999842


Q ss_pred             Ch-----------hhhcc---cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH--hCCeeEE
Q 021388          206 TE-----------ETRHI---INREVIDALGPKGVLINIGRGPHVDERELVSALV--EGRLGGA  253 (313)
Q Consensus       206 ~~-----------~t~~l---i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~--~~~l~ga  253 (313)
                      ..           .+..+   +-++. ....|++++++++...-+....+.+...  ..++.|.
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i-~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~  145 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGV-KKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM  145 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHH-HHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence            11           11111   11222 2235799999998765555555655542  3345543

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.87  E-value=8.6e-06  Score=77.28  Aligned_cols=84  Identities=7%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCCCEEEec---CCCCC------ccc---------c----------ccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSCPINYYS---RTEKP------NLK---------Y----------KYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~~~~---~~~~~------~~~---------~----------~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||..+|..|.. .|++|.+|+   ++++.      ..+         .          ....++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            489999999999999999987 599999999   64221      001         1          123467788899


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEc
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      +|+|++++|... ...++ ++....+++++++++.
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999543 33333 4555677889999984

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.87  E-value=3.1e-05  Score=71.51  Aligned_cols=82  Identities=18%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc-----------ccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL-----------KYKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~-----------~~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      ..++++|||.|.+|+.+++.+.. .+. +|.+|||++++..           ... +.++++++ ++|+|++++|..   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~---  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR---  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence            45799999999999999999876 444 6999999875321           123 56888999 999999999954   


Q ss_pred             hcccCHHHHhccCCCcEEEEcCC
Q 021388          210 RHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ..++..   ..+++|..++++|.
T Consensus       199 ~pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          199 KPVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             SCCBCG---GGCCTTCEEEECSC
T ss_pred             CceecH---HHcCCCeEEEECCC
Confidence            244543   46789999999964

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.86  E-value=1.8e-05  Score=60.89  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecCCChhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      .+++|+|+|.|.||+.+++.|...| ++|.+++|+++...     +..       ...++.++++.+|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4579999999999999999999999 89999998764311     111       11235567789999999987432 1


Q ss_pred             hcccCHHHHhccCCCcEEEEcC
Q 021388          210 RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ..++    -...+.|...++.+
T Consensus        83 ~~~~----~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIA----KAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHH----HHHHHTTCEEECCC
T ss_pred             HHHH----HHHHHhCCCEEEec
Confidence            2121    11234566677765

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.86  E-value=8e-06  Score=73.62  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=61.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc------c--c-cCCCHHHHhh-cCCEEEEecCCChhhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK------Y--K-YYPSVVELAS-NCHILVVACPLTEETR  210 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~------~--~-~~~~l~e~~~-~aDvV~~~lp~~~~t~  210 (313)
                      .+.+++++|+|.|.+|++++..|...|.+|.+++|+.++...      .  . ...+++++.+ ++|+|+.++|......
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCC
Confidence            477899999999999999999999999999999998643211      0  0 0123334333 8999999998654211


Q ss_pred             c-ccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388          211 H-IINREVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       211 ~-li~~~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      - -+..+.   ++++.+++|+.-....+.+
T Consensus       196 ~~~i~~~~---l~~~~~v~D~~y~p~~~t~  222 (272)
T 1p77_A          196 TASVDAEI---LKLGSAFYDMQYAKGTDTP  222 (272)
T ss_dssp             --CCCHHH---HHHCSCEEESCCCTTSCCH
T ss_pred             CCCCCHHH---cCCCCEEEEeeCCCCcCCH
Confidence            0 122222   3456666776665444344

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.85  E-value=6.3e-06  Score=74.96  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccc---ccCCCHHHHh-hcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKY---KYYPSVVELA-SNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~---~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      ++|+|||.|.||..+|..|...|.+|.+|+|+.+..     .+.   ....+..+.+ ..+|+|++++|.. ++..++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            579999999999999999998899999999985421     111   0111233433 7899999999844 344444 4


Q ss_pred             HHHhccCCCcEEEEcCCCccc
Q 021388          216 EVIDALGPKGVLINIGRGPHV  236 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~rg~~v  236 (313)
                      +....+++++++|.+.-|=-.
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCC
T ss_pred             HHHHhhCCCCEEEEeccCccc
Confidence            455667788999999887433

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.84  E-value=8.7e-06  Score=73.89  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=71.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc------c---ccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK------Y---KYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~------~---~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++...      .   ....+++++..++|+|+.++|......
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            5789999999999999999999999997 89999998653211      0   112245555578999999999764322


Q ss_pred             -cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          211 -HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       211 -~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                       ..+..   ..++++.+++|+.-.+ ..+.-| ++.++..
T Consensus       203 ~~~l~~---~~l~~~~~V~DlvY~P-~~T~ll-~~A~~~G  237 (281)
T 3o8q_A          203 LPAIDP---VIFSSRSVCYDMMYGK-GYTVFN-QWARQHG  237 (281)
T ss_dssp             -CSCCG---GGEEEEEEEEESCCCS-SCCHHH-HHHHHTT
T ss_pred             CCCCCH---HHhCcCCEEEEecCCC-ccCHHH-HHHHHCC
Confidence             12332   3467888999988664 344444 4444443

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.83  E-value=3.1e-05  Score=69.61  Aligned_cols=90  Identities=17%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cc---ccCCCHHHHh-hcCCEEEEecCCChhhh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KY---KYYPSVVELA-SNCHILVVACPLTEETR  210 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~---~~~~~l~e~~-~~aDvV~~~lp~~~~t~  210 (313)
                      .+.|+++.|+|.|.+|+++++.|...|.+|.+++|+.++..      +.   ....+++++. .++|+|+.++|..... 
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-  194 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-  194 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-
Confidence            46789999999999999999999999999999999864321      10   0012333433 5899999999865431 


Q ss_pred             cc--cCHHHHhccCCCcEEEEcCCCc
Q 021388          211 HI--INREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       211 ~l--i~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      .+  +..   ..++++.+++|+.-..
T Consensus       195 ~~~~i~~---~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPS---SLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred             CCCCCCH---HHcCCCCEEEEeccCC
Confidence            11  222   2357888888888764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.79  E-value=2.1e-05  Score=62.58  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=57.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----cCCCHH---HH-hhcCCEEEEecCCChh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----YYPSVV---EL-ASNCHILVVACPLTEE  208 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~l~---e~-~~~aDvV~~~lp~~~~  208 (313)
                      +.++++.|+|+|.+|+.+++.|...|++|.++|++++..     .+..    ...+.+   ++ +.++|+|+.+++...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            567789999999999999999999999999999865421     1111    112222   22 5689999999986522


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .... -......+.+. .+|-...+
T Consensus        84 ~~~~-~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           84 ASTL-TTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             HHHH-HHHHHHHTTCS-EEEEECCS
T ss_pred             HHHH-HHHHHHHcCCC-eEEEEeCC
Confidence            2212 23445556666 44544444

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.73  E-value=5e-05  Score=71.91  Aligned_cols=87  Identities=18%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             EEEEEcCChHHHHHHHHHHhCC--------CCEEEecCCCCCc------------------cc------cccCCCHHHHh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFS--------CPINYYSRTEKPN------------------LK------YKYYPSVVELA  193 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G--------~~V~~~~~~~~~~------------------~~------~~~~~~l~e~~  193 (313)
                      +|+|||.|.+|.++|..|...|        .+|..|.|+++..                  .+      .....++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999998654        3588887764310                  01      12245789999


Q ss_pred             hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      +.+|+|++++|. ...+.++ ++....++++..+|+++.|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999993 2333333 55566788999999999883

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.73  E-value=4.9e-05  Score=69.27  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=71.4

Q ss_pred             CCEEEEEcCChHHHH-HHHHHHh-CCCCEE-EecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          144 GKTVGIIGLGRIGMA-VAKRAEA-FSCPIN-YYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       144 g~~igiiG~G~iG~~-iA~~l~~-~G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ..+|||||+|.||+. +++.++. -++++. ++|++++...      +...+.++++++++.|+|++++|...+...   
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~---   82 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEI---   82 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHH---
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHH---
Confidence            468999999999996 8888876 467776 7898765321      333477899999999999999995443222   


Q ss_pred             HHHHhccCCCc-EEEE-cCCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPKG-VLIN-IGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~lIn-~~rg~~vd~~al~~al~~~~l~  251 (313)
                        ....++.|. +++. -..-++-+.++|.++.++.++.
T Consensus        83 --~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           83 --IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             --HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence              223344453 4443 3344556777788888776654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.72  E-value=6.2e-05  Score=67.92  Aligned_cols=105  Identities=15%  Similarity=0.074  Sum_probs=69.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc--------ccCCCHHHHh-hcCCEEEEecCCChhh
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY--------KYYPSVVELA-SNCHILVVACPLTEET  209 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~--------~~~~~l~e~~-~~aDvV~~~lp~~~~t  209 (313)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++....        ....+++++. .++|+|+.++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            35789999999999999999999999997 899999987532210        0112334433 7899999999864321


Q ss_pred             h-cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          210 R-HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       210 ~-~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      . ..+..   +.++++.+++|+.-.+ ..+.-|.+|-+.|
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             CCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            1 12333   3467888888886653 3344344444444

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.70  E-value=3.7e-05  Score=70.44  Aligned_cols=62  Identities=19%  Similarity=0.235  Sum_probs=47.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCccc---------------ccc-CCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPNLK---------------YKY-YPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~~---------------~~~-~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.||..+|..|...|  .+|..+|++++...+               ... ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998878  689999997642110               111 2456 6788999999999854


Q ss_pred             h
Q 021388          207 E  207 (313)
Q Consensus       207 ~  207 (313)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.66  E-value=0.00016  Score=64.40  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCE-EEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPI-NYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      -..++|+++|+|+||+.+++.  . ++++ .+|+ ......+.....+++++++++|+|+=|.+ .+    -+.+.....
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHHHHHH
Confidence            466899999999999999998  4 8885 5677 22222244445678888889999977664 22    233345677


Q ss_pred             cCCCcEEEEcCCCccccH---HHHHHHHHhCCee
Q 021388          221 LGPKGVLINIGRGPHVDE---RELVSALVEGRLG  251 (313)
Q Consensus       221 mk~ga~lIn~~rg~~vd~---~al~~al~~~~l~  251 (313)
                      |+.|.-+|-+|-|.+.|.   +.|.++.++|+-.
T Consensus        81 L~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           81 LKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             TTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            889999999999988887   5677777777644

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.66  E-value=0.00013  Score=66.66  Aligned_cols=102  Identities=22%  Similarity=0.254  Sum_probs=71.0

Q ss_pred             CEEEEEcCChHHHH-HHHHHHh-CCCCEE-EecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEA-FSCPIN-YYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~-~G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.||+. +++.++. -|+++. ++|++++...      +...+.+.+++..+.|+|++++|......     
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~-----   80 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD-----   80 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH-----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHH-----
Confidence            58999999999997 8888875 467765 8898876432      23345678777678999999999554322     


Q ss_pred             HHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          216 EVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       216 ~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                      -....++.|. +++.- ...++-+.++|.++.++.++.
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            1223455665 56652 334556777899988887765

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.66  E-value=7.8e-05  Score=67.65  Aligned_cols=104  Identities=14%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------ccc--CCCHHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------YKY--YPSVVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~~~--~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++...             ...  ..++.+.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4789999999999999999999999999 59999998653211             011  2377788899999999998


Q ss_pred             CChhhh--cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          205 LTEETR--HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       205 ~~~~t~--~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      ..-...  ..+.   ...++++.+++|+.=.+ ..+.-|.+|-+.|
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G  245 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCc
Confidence            542111  1222   23466777777776543 2333343444433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.65  E-value=7.4e-05  Score=59.82  Aligned_cols=85  Identities=6%  Similarity=0.011  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----cCCCHHHH----hhcCCEEEEecCCChhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----YYPSVVEL----ASNCHILVVACPLTEET  209 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~l~e~----~~~aDvV~~~lp~~~~t  209 (313)
                      .++++.|+|+|.+|+.+++.|...|++|.++|++++..     .+..    ...+.+.+    +.++|+|++++|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            45789999999999999999999999999999876531     1111    11222222    46799999999843332


Q ss_pred             hcccCHHHHhccCCCcEEEE
Q 021388          210 RHIINREVIDALGPKGVLIN  229 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn  229 (313)
                        +.-...+..+....+++-
T Consensus        85 --~~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           85 --LKILKALRSVSDVYAIVR  102 (141)
T ss_dssp             --HHHHHHHHHHCCCCEEEE
T ss_pred             --HHHHHHHHHhCCceEEEE
Confidence              222344555554444443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.64  E-value=0.00012  Score=67.84  Aligned_cols=102  Identities=16%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCc------cccccCCCHHHHhh--cCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPN------LKYKYYPSVVELAS--NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~  214 (313)
                      .+|||||+|.||+.+++.++.. ++++. ++|++++..      .+...+.+++++++  +.|+|++++|...+....  
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   82 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI--   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH--
Confidence            4799999999999999999876 67765 788876532      13345678999998  899999999955433222  


Q ss_pred             HHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      .   ..++.| .+++.-- .-++-+.++|.++.++.++.
T Consensus        83 ~---~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  118 (344)
T 3euw_A           83 T---RAVERGIPALCEKPIDLDIEMVRACKEKIGDGASK  118 (344)
T ss_dssp             H---HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGG
T ss_pred             H---HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCe
Confidence            2   223333 3444322 33344556666666665554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.63  E-value=0.00012  Score=67.87  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEec--
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVAC--  203 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~l--  203 (313)
                      .++|+|||.|.+|..+|..|...|+ +|..||++++...+                 .....++++.+++||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            3689999999999999999998887 89999998753211                 111357887899999999998  


Q ss_pred             CCChhh------hcc-c------CH---HHHhccCCCcEEEEcCCC
Q 021388          204 PLTEET------RHI-I------NR---EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       204 p~~~~t------~~l-i------~~---~~l~~mk~ga~lIn~~rg  233 (313)
                      |..+..      +.- +      -+   +.+....|.+++++++--
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP  134 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  134 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence            644321      110 0      01   122333589999988553

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.62  E-value=0.0003  Score=66.36  Aligned_cols=175  Identities=14%  Similarity=0.207  Sum_probs=112.3

Q ss_pred             CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388           90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-  168 (313)
                      +|++.|+ +..  -+|=-+++-+++.+| +                  .+..+...+|.|+|.|..|..+|+.+.++|. 
T Consensus       156 ~ipvf~D-Diq--GTa~V~lAall~al~-l------------------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-DQH--GTAIVVLAAIFNSLK-L------------------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-HHH--HHHHHHHHHHHHHHH-T------------------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-hhh--hHHHHHHHHHHHHHH-H------------------hCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5899994 332  344455666666655 1                  2446888999999999999999999999999 


Q ss_pred             CEEEecCCC-------CCcccc-----------ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEc
Q 021388          169 PINYYSRTE-------KPNLKY-----------KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       169 ~V~~~~~~~-------~~~~~~-----------~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      +|+.+|+..       ......           ....+|+|+++.+|+++-+-     +.+++.++.++.|+++++++.+
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIfal  288 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIFAM  288 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEEEC
T ss_pred             eEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEEEC
Confidence            899999863       111110           11346899999999987652     3578999999999999999999


Q ss_pred             CCCcc-ccHHHHHHHHHhCC-eeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH-----HHHHHHHHHHHHHHH
Q 021388          231 GRGPH-VDERELVSALVEGR-LGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR-----KTMADLVLGNLEAHF  303 (313)
Q Consensus       231 ~rg~~-vd~~al~~al~~~~-l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~-----~~~~~~~~~nl~~~~  303 (313)
                      |+... +..++..+   .|+ +.+-+   -.      +.-=|..|+++-|=++-..-.+.     +.|.-.+++-|.++.
T Consensus       289 sNPt~E~~pe~a~~---~g~~i~atG---rs------~~p~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~aAa~alA~~~  356 (398)
T 2a9f_A          289 ANPIPEIYPDEALE---AGAYIVGTG---RS------DFPNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLV  356 (398)
T ss_dssp             CSSSCSSCHHHHHT---TTCSEEEES---CT------TSSSBCCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTC
T ss_pred             CCCCccCCHHHHHH---hCCeEEEeC---CC------CCCCcCCceeEcchHHHHHHHcCCcCCCHHHHHHHHHHHHhcC
Confidence            98654 23333333   355 33222   11      11235667766665443222222     444444555555544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.60  E-value=0.00029  Score=62.41  Aligned_cols=81  Identities=19%  Similarity=0.219  Sum_probs=57.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP  223 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~  223 (313)
                      .+|+|+|+|+||+.+++.+...+.++. ++|+......+.....++++++ ++|+|+-..+ ...+.     +.+. ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~-----~~~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSN-PNLLF-----PLLD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSC-HHHHH-----HHHT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCC-hHHHH-----HHHH-Hhc
Confidence            589999999999999999987765654 5788776555666677888888 9999874442 12222     2334 777


Q ss_pred             CcEEEEcCCC
Q 021388          224 KGVLINIGRG  233 (313)
Q Consensus       224 ga~lIn~~rg  233 (313)
                      |.-+|....|
T Consensus        76 g~~vVigTTG   85 (243)
T 3qy9_A           76 HLPLVVATTG   85 (243)
T ss_dssp             CCCEEECCCS
T ss_pred             CCceEeCCCC
Confidence            7777766666

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.59  E-value=0.00025  Score=68.12  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC---CEEEec----CC----CCCc---c-cc-----c------cCCCHHHHh
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC---PINYYS----RT----EKPN---L-KY-----K------YYPSVVELA  193 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~---~V~~~~----~~----~~~~---~-~~-----~------~~~~l~e~~  193 (313)
                      ..+.++++.|+|.|..|+++++.|...|.   +|+++|    |+    ....   . ..     .      ...++.+.+
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l  261 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEAL  261 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHH
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHh
Confidence            45788999999999999999999999998   799999    76    2211   1 00     0      134688889


Q ss_pred             hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                      +++|+++.+.|..+   +++.++.++.|++++++++++..  ..+.-+.+|.+.|.
T Consensus       262 ~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          262 KDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA  312 (439)
T ss_dssp             TTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred             ccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence            99999999988532   34556678889999999999543  34555555555554

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.58  E-value=0.00016  Score=66.48  Aligned_cols=101  Identities=11%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCc------cccccCCCHHHHhh--cCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPN------LKYKYYPSVVELAS--NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~  214 (313)
                      .+|||||+|.||+..++.+... ++++. ++|++++..      .+.. +.+++++++  +.|+|++++|...+...   
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~---   79 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADL---   79 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHH---
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHH---
Confidence            4899999999999999999875 77866 688876532      1334 678999998  79999999995443322   


Q ss_pred             HHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                        ....++.|. +++.- ..-++-+.++|.++.++.++.
T Consensus        80 --~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           80 --IERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             --HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence              122333443 33332 233445566677777766654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.58  E-value=7.9e-05  Score=68.63  Aligned_cols=107  Identities=17%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------cc-cCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YK-YYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~-~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|||.|.||..+|..|...|+  +|..+|++++...+              .. ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            479999999999999999998888  89999987642111              00 1124 356789999999998543


Q ss_pred             hh---h--------cccCHHHHhc---cCCCcEEEEcCCCccccHHHHHHHH--HhCCeeEE
Q 021388          208 ET---R--------HIINREVIDA---LGPKGVLINIGRGPHVDERELVSAL--VEGRLGGA  253 (313)
Q Consensus       208 ~t---~--------~li~~~~l~~---mk~ga~lIn~~rg~~vd~~al~~al--~~~~l~ga  253 (313)
                      ..   +        .++ .+.+..   ..|++++|+++.+.-+-...+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            10   0        011 222222   2578899888655433223332322  34466554

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.55  E-value=0.00013  Score=67.91  Aligned_cols=101  Identities=16%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------ccccCCCHHHHh--hcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------KYKYYPSVVELA--SNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~e~~--~~aDvV~~~lp~~~~t~~li~  214 (313)
                      .+|||||+|.||+..++.++.. |+++. ++|++++...      +...+.++++++  .+.|+|++++|...+....  
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   83 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI--   83 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH--
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH--
Confidence            4899999999999999999877 78855 7888765321      334577899999  5699999999965443322  


Q ss_pred             HHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          215 REVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       215 ~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                         ...++.|. +++.-- .-++-+.++|.++.++.++
T Consensus        84 ---~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~  118 (354)
T 3db2_A           84 ---EQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGV  118 (354)
T ss_dssp             ---HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence               22333443 343322 2334455556666555443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.55  E-value=9.3e-05  Score=68.80  Aligned_cols=103  Identities=13%  Similarity=0.093  Sum_probs=66.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhC--CCCEE-EecCCCCCcc------ccccCCCHHHHhh--cCCEEEEecCCChhhhcc
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAF--SCPIN-YYSRTEKPNL------KYKYYPSVVELAS--NCHILVVACPLTEETRHI  212 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~l  212 (313)
                      -.+|||||+|.||+..++.++..  ++++. ++|++++...      +...+.+++++++  +.|+|++++|...+... 
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~-   91 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQ-   91 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHH-
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHH-
Confidence            35899999999999999999876  77755 7888765321      3345679999987  79999999995433221 


Q ss_pred             cCHHHHhccCCCcEEEE-c-CCCccccHHHHHHHHHhCCee
Q 021388          213 INREVIDALGPKGVLIN-I-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn-~-~rg~~vd~~al~~al~~~~l~  251 (313)
                          ....++.|.-++. - --.++-+.++|.++.++.++.
T Consensus        92 ----~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~  128 (354)
T 3q2i_A           92 ----SIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKH  128 (354)
T ss_dssp             ----HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             ----HHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence                2223334433332 1 123344555566666554443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.54  E-value=0.00018  Score=66.18  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=63.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC---CCcc----------c--c--ccCCC---HHHHhhcCCE
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE---KPNL----------K--Y--KYYPS---VVELASNCHI  198 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~---~~~~----------~--~--~~~~~---l~e~~~~aDv  198 (313)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.   ++..          +  .  ....+   +.+.+.++|+
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            35889999999999999999999999999 799999983   2211          0  0  11122   4566789999


Q ss_pred             EEEecCCChhh--h-cccCHHHHhccCCCcEEEEcCCCc
Q 021388          199 LVVACPLTEET--R-HIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       199 V~~~lp~~~~t--~-~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      |+.++|..-..  . ..+.  ....++++.+++|+.=.+
T Consensus       230 IINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          230 FTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             EEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred             EEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence            99999854211  1 1121  223467788888876544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.52  E-value=0.00017  Score=66.13  Aligned_cols=60  Identities=17%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHh--CCCCEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA--FSCPINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~--~G~~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|||.|.+|..+|..|..  +|.+|..+|++++...+                 .....+.++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            479999999999999999986  57899999998752111                 011245666 8999999999974

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.52  E-value=5e-05  Score=69.50  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCE-EEecCCCCCccc----cccCCCHHHHhh--cCCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPI-NYYSRTEKPNLK----YKYYPSVVELAS--NCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V-~~~~~~~~~~~~----~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      .+|||||+|.||+.+++.+... ++++ .++|++++....    ...+.+++++++  ++|+|++++|...+..     -
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-----~   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAE-----I   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHH-----H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHH-----H
Confidence            4899999999999999999875 5664 488887643211    234568899885  7999999999443322     1


Q ss_pred             HHhccCCCc-EEEE-cCCCccccHHHHHHHHHhCCee
Q 021388          217 VIDALGPKG-VLIN-IGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga-~lIn-~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ....++.|. +++. ...-++-+.++|.++.++.++.
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            223455664 5555 2233455667788888776654

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.51  E-value=0.00016  Score=66.71  Aligned_cols=102  Identities=17%  Similarity=0.065  Sum_probs=67.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li  213 (313)
                      .+|||||+|.||+.+++.++.. ++++. ++|++++...      +. ..+.++++++.  +.|+|++++|...+.... 
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~-   84 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAA-   84 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHH-
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHH-
Confidence            5899999999999999999875 67765 6788765321      23 35678999987  799999999955432221 


Q ss_pred             CHHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          214 NREVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       214 ~~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                          ...++.| .+++.-- .-++-+.++|.++.++.++.
T Consensus        85 ----~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~  120 (330)
T 3e9m_A           85 ----KLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVF  120 (330)
T ss_dssp             ----HHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             ----HHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence                2223334 2444322 33445556666666666554

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.51  E-value=0.00023  Score=64.66  Aligned_cols=104  Identities=22%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEE-EecCCCC--CccccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHH
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLKYKYYPSVVELAS--NCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ..+|+|+|+ |++|+..++.++..|+++. ..|+...  ...+...+.+++++..  ..|++++++|... ....+ .+.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~-~~~~~-~ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPF-CKDSI-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGG-HHHHH-HHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHH-HHHHH-HHH
Confidence            468999999 9999999999998899843 5666532  2234455778999988  8999999999432 22222 333


Q ss_pred             HhccCCCcEEEEcCCCc-cccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRGP-HVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~-~vd~~al~~al~~~~l~  251 (313)
                      ++. .. ..+|..+.|- .-+.+.+.++.++..+.
T Consensus        85 ~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 IDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            322 22 2334454442 34456888888887765

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.50  E-value=0.00017  Score=66.14  Aligned_cols=101  Identities=21%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             EEEEEcCChHHHHH-HHHHHhCCCCEE-EecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCChhhhcccC
Q 021388          146 TVGIIGLGRIGMAV-AKRAEAFSCPIN-YYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       146 ~igiiG~G~iG~~i-A~~l~~~G~~V~-~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~  214 (313)
                      +|||||+|.||+.+ ++.++..|+++. ++|++++...      +. ..+.+++++++  ++|+|++++|...+..    
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~----   77 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE----   77 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH----
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH----
Confidence            79999999999998 777766778865 7888765321      22 24678999987  4999999999433221    


Q ss_pred             HHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                       -....++.|. +++.- ...+.-+.++|.++.++.++.
T Consensus        78 -~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           78 -QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             -HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             -HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence             2223455665 44442 233445566777777766554

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.50  E-value=0.00028  Score=63.97  Aligned_cols=104  Identities=12%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc----c--ccCCCHHHHhhcCCEEEEecCCC--hhhh-
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK----Y--KYYPSVVELASNCHILVVACPLT--EETR-  210 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~----~--~~~~~l~e~~~~aDvV~~~lp~~--~~t~-  210 (313)
                      .+.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++...    .  ....++.+ + ++|+|+.++|..  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4789999999999999999999999999 79999998754221    1  11122333 4 899999999863  2211 


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      -.+..+.   ++++.+++|+.=.+. .+ .|+++.++..+.
T Consensus       197 ~pi~~~~---l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~~  232 (282)
T 3fbt_A          197 SPVDKEV---VAKFSSAVDLIYNPV-ET-LFLKYARESGVK  232 (282)
T ss_dssp             CSSCHHH---HTTCSEEEESCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCHHH---cCCCCEEEEEeeCCC-CC-HHHHHHHHCcCe
Confidence            1244443   568889999875442 33 344444444444

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.49  E-value=4.1e-05  Score=69.39  Aligned_cols=106  Identities=17%  Similarity=0.137  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccc---------------cCCCHHHHhhcCCEEEEecCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK---------------YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~---------------~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++.|+++.|+|.|.||+++|+.|...| +|.+++|+.++.....               ...++.+.+.++|+|+.++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            478899999999999999999999999 9999999764321100               011224556789999999985


Q ss_pred             Chhhh--c-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          206 TEETR--H-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       206 ~~~t~--~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .....  . .+.  ..+.++++.+++|+.-.. ..+ .+.+..++....
T Consensus       204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~~  248 (287)
T 1nvt_A          204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LET-VLLKEAKKVNAK  248 (287)
T ss_dssp             TCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTTTCE
T ss_pred             CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCCE
Confidence            43211  0 120  134678899999998753 233 355555554443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.48  E-value=0.00014  Score=67.65  Aligned_cols=105  Identities=18%  Similarity=0.079  Sum_probs=66.3

Q ss_pred             cCCCEEEEEcCChHHH-HHHHHHHhC-CCCEE-EecCCCCCcc------ccccCCCHHHHhh--cCCEEEEecCCChhhh
Q 021388          142 FTGKTVGIIGLGRIGM-AVAKRAEAF-SCPIN-YYSRTEKPNL------KYKYYPSVVELAS--NCHILVVACPLTEETR  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~-~iA~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~  210 (313)
                      ....+|||||+|.||+ .+++.++.. +++|. ++|++++...      +...+.+++++++  +.|+|++++|...+..
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~  104 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE  104 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            3446899999999998 789988876 77765 7788765321      3334578999986  5899999999544322


Q ss_pred             cccCHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          211 HIINREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       211 ~li~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      .     ....++.|. +++.-- -.++-+.++|.++.++.++.
T Consensus       105 ~-----~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~  142 (350)
T 3rc1_A          105 W-----IDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLL  142 (350)
T ss_dssp             H-----HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             H-----HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            1     122233443 333321 23445556666666555543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.48  E-value=0.00031  Score=57.08  Aligned_cols=87  Identities=3%  Similarity=-0.034  Sum_probs=57.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC---------cccccc----CC---CHHHH-hhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP---------NLKYKY----YP---SVVEL-ASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~---------~~~~~~----~~---~l~e~-~~~aDvV~~~lp~~  206 (313)
                      ++++.|+|+|.+|+.+++.|...|++|.+.|+++..         ..+...    ..   .+.+. +.++|+|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            467999999999999999999999999999987410         111111    11   23444 78899999999865


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +.+.  .-......+.+...+|...+
T Consensus        83 ~~n~--~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           83 ADNA--FVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             HHHH--HHHHHHHHHTSSSCEEEECS
T ss_pred             HHHH--HHHHHHHHHCCCCEEEEEEC
Confidence            4333  22445556644444444333

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.47  E-value=0.00021  Score=66.11  Aligned_cols=60  Identities=18%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .++|+|||.|.||..+|..+...|+ +|..||++++...+                 .....++ +.+++||+|+++++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            3699999999999999999998898 89999998753221                 1112456 67899999999983

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.47  E-value=0.00026  Score=65.13  Aligned_cols=101  Identities=14%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCE-EEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPI-NYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V-~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      .+|||||+|+||+.+++.+... ++++ .++|+++....  +...+.++++++.++|+|++++|...+.     +.....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHHHH
Confidence            4799999999999999999876 5664 57787744321  2223457778778899999999854322     334455


Q ss_pred             cCCCcEEEEcCCCcc--ccH-HHHHHHHHhCCe
Q 021388          221 LGPKGVLINIGRGPH--VDE-RELVSALVEGRL  250 (313)
Q Consensus       221 mk~ga~lIn~~rg~~--vd~-~al~~al~~~~l  250 (313)
                      ++.|.-+|...-..+  -+. +.|.++.+++..
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~  111 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCC
Confidence            677877666554432  233 567777776553

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.45  E-value=0.00019  Score=67.03  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCc-----cccccCCCHHHHhh--cCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPN-----LKYKYYPSVVELAS--NCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~-----~~~~~~~~l~e~~~--~aDvV~~~lp~~~~  208 (313)
                      .+|||||+|.||+..++.++.. ++++. ++|++++..     .+...+.+++++++  +.|+|++++|...+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            5899999999999999999876 67765 678876532     23445789999987  78999999995433

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.44  E-value=0.00031  Score=64.57  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=66.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------ccc-cCCCHHHHhh--cCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------KYK-YYPSVVELAS--NCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~~~-~~~~l~e~~~--~aDvV~~~lp~~~~t~~li  213 (313)
                      .++||||+|.||+.+++.++.. ++++. ++|++++...      +.. .+.++++++.  +.|+|++++|...+...  
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~--   83 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKV--   83 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHH--
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH--
Confidence            5899999999999999998765 45654 6788766432      222 4678999998  79999999995433221  


Q ss_pred             CHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          214 NREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       214 ~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                         ....++.|. +++.-- --++-+.++|.++.++.++.
T Consensus        84 ---~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~  120 (329)
T 3evn_A           84 ---AKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLF  120 (329)
T ss_dssp             ---HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             ---HHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCE
Confidence               223344443 333321 33445566677777666654

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.43  E-value=0.00041  Score=54.87  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=74.3

Q ss_pred             CEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          145 KTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       145 ~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      ++|+|||.    |..|..+.+.|+..|++|+-.++......|...+.++.++-. -|++++++|. +.+..++ ++.. .
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v-~e~~-~   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINP-QNQLSEY-NYIL-S   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGH-HHHH-H
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHH-HHHH-h
Confidence            57999998    568999999999999999999998776667666778888877 9999999983 3344444 3333 3


Q ss_pred             cCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          221 LGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       221 mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +...+++++.|-    .++++.+.+++..++
T Consensus        81 ~g~k~v~~~~G~----~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           81 LKPKRVIFNPGT----ENEELEEILSENGIE  107 (122)
T ss_dssp             HCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             cCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence            444567766543    357788888888777

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.40  E-value=0.00026  Score=65.46  Aligned_cols=101  Identities=21%  Similarity=0.243  Sum_probs=66.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li  213 (313)
                      .+|||||+|.||+..++.++.. ++++. ++|++++...      +. ..+.+++++++  +.|+|++++|...+...  
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~--   80 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSEL--   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHH--
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHH--
Confidence            4799999999999999999875 67765 6888765321      22 24678999998  79999999995433221  


Q ss_pred             CHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          214 NREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       214 ~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                         ....++.|. +++.-- .-++-+.++|.++.++.++
T Consensus        81 ---~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~  116 (344)
T 3ezy_A           81 ---VIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADV  116 (344)
T ss_dssp             ---HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence               222334443 444422 3344555666666665544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.39  E-value=0.00016  Score=66.12  Aligned_cols=101  Identities=16%  Similarity=0.112  Sum_probs=63.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCCCEE-EecCCCCCcc--ccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSCPIN-YYSRTEKPNL--KYK--YYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~~--~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .+|||||+|+||+.+++.++. -++++. ++|++++...  +..  ...++.+. .++|+|++|+|...+.     +...
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~~~~   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----RTAL   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----HHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----HHHH
Confidence            589999999999999999986 467776 6888765322  221  13445554 6899999999843322     2233


Q ss_pred             hccCCCcEEEEcCC--C-ccccHHHHHHHHHhCCee
Q 021388          219 DALGPKGVLINIGR--G-PHVDERELVSALVEGRLG  251 (313)
Q Consensus       219 ~~mk~ga~lIn~~r--g-~~vd~~al~~al~~~~l~  251 (313)
                      ..++.|.-+++..-  + ...+.+.|.++.++..+.
T Consensus        84 ~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~  119 (304)
T 3bio_A           84 EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA  119 (304)
T ss_dssp             HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence            45667877776532  2 334556777777776543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.39  E-value=0.00025  Score=65.44  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHHHHHHHH-h-CCCCE-EEecCCCCCc------ccc-ccCCCHHHHhh--cCCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-A-FSCPI-NYYSRTEKPN------LKY-KYYPSVVELAS--NCHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~-~G~~V-~~~~~~~~~~------~~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~l  212 (313)
                      .+|||||+|.||+..++.++ . -|+++ .++|++++..      .+. ..+.+++++++  ++|+|++++|...+..  
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--   86 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE--   86 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence            58999999999999999988 5 47775 5788876532      123 34578999986  6999999999443322  


Q ss_pred             cCHHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhC-Cee
Q 021388          213 INREVIDALGPKG-VLINI-GRGPHVDERELVSALVEG-RLG  251 (313)
Q Consensus       213 i~~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~-~l~  251 (313)
                         .....++.|. +++.- ...++-+.++|.++.++. ++.
T Consensus        87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence               2334455665 44431 123344556688888877 665

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.39  E-value=0.00038  Score=64.22  Aligned_cols=58  Identities=10%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      ++|+|||.|.||..+|..+...|+ +|..+|++++...+                 .....+. +.+++||+|++++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999998888 89999987753211                 1112456 7789999999998

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.37  E-value=0.00016  Score=66.20  Aligned_cols=108  Identities=13%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------c------cc-CCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------Y------KY-YPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------~------~~-~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|||.|.+|..+|..+...|+  +|..+|++++...+        .      .. ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998898  89999987642111        0      00 123 356889999999995332


Q ss_pred             h-----------hhcccC--HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE
Q 021388          208 E-----------TRHIIN--REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA  253 (313)
Q Consensus       208 ~-----------t~~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga  253 (313)
                      .           +..++.  .+.+....|++++++++.+.-+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           111110  122333368999999766544444445555455566554

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.35  E-value=0.00047  Score=70.48  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------------cc-------ccCCCHHHHhhcCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------------KY-------KYYPSVVELASNCH  197 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------------~~-------~~~~~l~e~~~~aD  197 (313)
                      ++|||||.|.||+.+|..+...|++|..+|++++...                    ..       ....+. +.+++||
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD  395 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  395 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCC
Confidence            6999999999999999999999999999998764210                    00       011233 3478999


Q ss_pred             EEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          198 ILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       198 vV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                      +|+=++|.+.+.+.-+-+++=+.++++++|-....+  +....|.++++ ..-+.+++=-|.
T Consensus       396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn  454 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS  454 (742)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS
T ss_pred             EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC
Confidence            999999988888876667777789999998543333  34455655543 233334555453

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.35  E-value=0.00047  Score=63.45  Aligned_cols=102  Identities=8%  Similarity=0.075  Sum_probs=69.0

Q ss_pred             CEEEEEcCChHHH-HHHHHHHhCCCCE-EEecCCCCCcc-------ccccCCCHHHHhh--cCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGLGRIGM-AVAKRAEAFSCPI-NYYSRTEKPNL-------KYKYYPSVVELAS--NCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~G~iG~-~iA~~l~~~G~~V-~~~~~~~~~~~-------~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li  213 (313)
                      .+|||||+|.+|. .+++.++..|+++ .++|++++...       +...+.+++++++  +.|+|++++|...+..   
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~---   81 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE---   81 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH---
Confidence            5899999999996 6777777678885 58898876432       2345678999987  6899999999543322   


Q ss_pred             CHHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          214 NREVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       214 ~~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                        -....++.|. +++.- ..-++-+.++|.++.++.++.
T Consensus        82 --~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~  119 (336)
T 2p2s_A           82 --LALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRK  119 (336)
T ss_dssp             --HHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCC
T ss_pred             --HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence              2233455564 55552 233445666777777666554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.35  E-value=0.00013  Score=66.61  Aligned_cols=101  Identities=18%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccC---------CCH-HHHhhcCCEEEEecCCChhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYY---------PSV-VELASNCHILVVACPLTEET  209 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~---------~~l-~e~~~~aDvV~~~lp~~~~t  209 (313)
                      ++|+|||.|.||..+|..|. .|.+|.+++|++...     .+....         .+. .+....+|+|+++++.. ++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            68999999999999999999 899999999976421     111100         000 23567899999999843 23


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ..++  +.++.+.+++ +|.+.-|=- .++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            3332  2233345566 888777632 223444444444443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.32  E-value=0.00074  Score=60.74  Aligned_cols=102  Identities=16%  Similarity=0.198  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc------cccCCCHHHHhhcCCEEEEecCCChhhh----c
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK------YKYYPSVVELASNCHILVVACPLTEETR----H  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~------~~~~~~l~e~~~~aDvV~~~lp~~~~t~----~  211 (313)
                      .++++.|+|.|.+|++++..|...|+ +|.+++|+.++...      .....++.  +.++|+|+.++|......    .
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            46789999999999999999999998 79999998653211      11111222  468999999999653211    1


Q ss_pred             -ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          212 -IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 -li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       .+..+.   ++++.+++|+.-.+. .+ .|.++.++.+..
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~~  231 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVAMPV-ET-PFIRYAQARGKQ  231 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCHHH---cCCCCEEEEeecCCC-CC-HHHHHHHHCCCE
Confidence             133233   456778888876443 33 455555554444

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.32  E-value=0.00037  Score=63.88  Aligned_cols=102  Identities=10%  Similarity=0.037  Sum_probs=66.4

Q ss_pred             CEEEEEcCChHHH-HHHHHHHhC-CCCEEEecCCCCCcc------cccc-CCCHHHHh-hcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGM-AVAKRAEAF-SCPINYYSRTEKPNL------KYKY-YPSVVELA-SNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~-~iA~~l~~~-G~~V~~~~~~~~~~~------~~~~-~~~l~e~~-~~aDvV~~~lp~~~~t~~li~  214 (313)
                      .+|||||+|.||+ .+++.++.. ++++.++|++++...      +... ..+..+++ .++|+|++++|......    
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~----   78 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST----   78 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH----
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH----
Confidence            3799999999998 489988765 678779998765321      2222 33444555 78999999999432221    


Q ss_pred             HHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                       -....++.|. +++.- .--++-+.++|.++.++.++.
T Consensus        79 -~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           79 -LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             -HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence             1223455564 56652 233445667788888887765

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.29  E-value=0.00099  Score=61.16  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC---Ccc----------cc----ccCCCH---HHHhhcCCEE
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK---PNL----------KY----KYYPSV---VELASNCHIL  199 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~---~~~----------~~----~~~~~l---~e~~~~aDvV  199 (313)
                      .+.|+++.|+|.|.+|++++..|...|+ +|.+++|+.+   +..          +.    ....++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            4789999999999999999999999999 6999999833   111          00    012343   5567889999


Q ss_pred             EEecCCCh--hhhccc--CHHHHhccCCCcEEEEcCCCc
Q 021388          200 VVACPLTE--ETRHII--NREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       200 ~~~lp~~~--~t~~li--~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      +.++|..-  .....+  +.   ..++++.++.|+.=.+
T Consensus       225 INaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          225 TNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP  260 (312)
T ss_dssp             EECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS
T ss_pred             EECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC
Confidence            99998642  111111  22   3456777777765443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.27  E-value=0.00058  Score=63.80  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc----ccccCCCHHHHhh--cCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL----KYKYYPSVVELAS--NCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.||+. .++.++.. +++|. ++|++++...    +...+.+++++++  +.|+|++++|...+...    
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~----   83 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL----   83 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH----
Confidence            47999999999997 77777765 67765 7788765321    2345679999998  78999999995443221    


Q ss_pred             HHHhccCCCcEEEEcC--CCccccHHHHHHHHHhCCee
Q 021388          216 EVIDALGPKGVLINIG--RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       216 ~~l~~mk~ga~lIn~~--rg~~vd~~al~~al~~~~l~  251 (313)
                       ....++.|.-++.--  --++-+.++|+++.++.++.
T Consensus        84 -~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  120 (364)
T 3e82_A           84 -ARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL  120 (364)
T ss_dssp             -HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence             223344554444322  23445566677777766654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.26  E-value=0.00028  Score=60.90  Aligned_cols=82  Identities=12%  Similarity=0.027  Sum_probs=54.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cccc----CCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKY----YPS---VVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~----~~~---l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      ++|.|+|+|.+|+.+|+.|...|++|.++|++++...      +...    ..+   ++++ +.++|+|+++++....+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            4689999999999999999999999999998765211      1111    122   3343 678999999998654433


Q ss_pred             cccCHHHHhccCCCcEEE
Q 021388          211 HIINREVIDALGPKGVLI  228 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lI  228 (313)
                        +-......+.+...+|
T Consensus        81 --~~~~~a~~~~~~~~ii   96 (218)
T 3l4b_C           81 --FIAQLVMKDFGVKRVV   96 (218)
T ss_dssp             --HHHHHHHHTSCCCEEE
T ss_pred             --HHHHHHHHHcCCCeEE
Confidence              2233444433444444

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.23  E-value=0.0005  Score=63.55  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             CEEEEEcCChHHHHHHHHHH-h-CCCCEE-EecCCCCCc------cc--cccCCCHHHHhhc--CCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-A-FSCPIN-YYSRTEKPN------LK--YKYYPSVVELASN--CHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~-~G~~V~-~~~~~~~~~------~~--~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~  211 (313)
                      .+|||||+|.||+..++.++ . -++++. ++|++++..      .+  ...+.++++++++  .|+|++++|...+...
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            47999999999999999998 5 467765 778876532      12  3456789999876  9999999995443221


Q ss_pred             ccCHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          212 IINREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       212 li~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                           ....++.|. +++.-- --++-+.++|.++.++.++
T Consensus        83 -----~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~  118 (344)
T 3mz0_A           83 -----VLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK  118 (344)
T ss_dssp             -----HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSS
T ss_pred             -----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCC
Confidence                 222344443 333221 2234455556666555444

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.23  E-value=0.0012  Score=59.90  Aligned_cols=104  Identities=19%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEE-EecCCC--CCccccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHH
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPIN-YYSRTE--KPNLKYKYYPSVVELAS--NCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~-~~~~~~--~~~~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      .++|+|+|. |++|+.+++.++..|+++. ..++..  ....+...+.+++++..  ..|++++++|. +.+...+ ++.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~-~ea   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH-HHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH-HHH
Confidence            468999999 9999999999998899843 566654  22235556778999988  89999999983 2333333 333


Q ss_pred             HhccCCCcEEEEcCCC-ccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRG-PHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg-~~vd~~al~~al~~~~l~  251 (313)
                      .+. +-. .+|..+.| +..+.+.+.++.++..+.
T Consensus        85 ~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 AHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            321 222 24445544 234566888888887765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.22  E-value=0.00074  Score=59.02  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=38.8

Q ss_pred             cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          136 YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|...++.|++|.|||.|.+|..-++.|...|++|.++++...
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4566789999999999999999999999999999999998654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.22  E-value=0.00047  Score=64.21  Aligned_cols=66  Identities=15%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-h-CCCCEE-EecCCCCCcc------c--cccCCCHHHHhh--cCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAE-A-FSCPIN-YYSRTEKPNL------K--YKYYPSVVELAS--NCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~-~-~G~~V~-~~~~~~~~~~------~--~~~~~~l~e~~~--~aDvV~~~lp~~~~  208 (313)
                      ...+|||||+|.||+..++.+. . -|+++. ++|++++...      +  ...+.++++++.  +.|+|++++|...+
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            3458999999999999999998 4 367765 7898876421      2  345678999987  48999999995443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.20  E-value=0.00095  Score=61.90  Aligned_cols=101  Identities=14%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCc----cccccCCCHHHHhhc--CCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPN----LKYKYYPSVVELASN--CHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.||+. .++.++.. +++|. ++|++++..    .+...+.++++++.+  .|+|++++|...+...    
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~----   83 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPL----   83 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH----
Confidence            58999999999997 78888765 67765 778876432    123456799999976  9999999996544322    


Q ss_pred             HHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          216 EVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       216 ~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                       ....++.|. +++.-- --++-+.++|.++.++.++
T Consensus        84 -~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~  119 (352)
T 3kux_A           84 -AQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGL  119 (352)
T ss_dssp             -HHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence             222333443 333322 2233444555555555444

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.15  E-value=0.00066  Score=63.28  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc-------ccccCCCHHHHhhcC--CEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL-------KYKYYPSVVELASNC--HILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~-------~~~~~~~l~e~~~~a--DvV~~~lp~~~~t~~l  212 (313)
                      .+|||||+|.||+. +++.++.. ++++. ++|++++...       +...+.++++++++.  |+|++++|...+..  
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~--   83 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFE--   83 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHH--
Confidence            58999999999995 88988876 67765 7888765321       223467899999754  99999999433221  


Q ss_pred             cCHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          213 INREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       213 i~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                      +   ....++.|. +++.-- --++-+.++|+++.++.++
T Consensus        84 ~---~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~  120 (359)
T 3m2t_A           84 M---GLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDV  120 (359)
T ss_dssp             H---HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTC
T ss_pred             H---HHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCC
Confidence            2   223344443 343321 2333455556666655443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.15  E-value=0.00058  Score=63.83  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-----------cccCCCHHHHhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-----------YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-----------~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      -+.++|+|+|.|.+|+.+|+.|+. ..+|.+.|++.+....           .....++.++++++|+|+.++|..
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            344689999999999999999976 4789888876542110           111234677889999999999843

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.12  E-value=0.0012  Score=60.79  Aligned_cols=102  Identities=21%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC---CCE-EEecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS---CPI-NYYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G---~~V-~~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~  211 (313)
                      .++||||+|.||+..++.++..+   +++ .++|++++...      +. ..+.+++++++  +.|+|++++|...+...
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   82 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            47999999999999999998764   344 46788765321      22 34678999987  69999999995433221


Q ss_pred             ccCHHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          212 IINREVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 li~~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                           ....++.|. +++.- ---++-+.++|.++.++.++.
T Consensus        83 -----~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~  119 (334)
T 3ohs_X           83 -----VMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLF  119 (334)
T ss_dssp             -----HHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCC
T ss_pred             -----HHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCE
Confidence                 222333443 33332 123444555666666655543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.12  E-value=0.00083  Score=62.49  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCE-EEecCCCCCcc------c----cccCCCHHHHhh--cCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPI-NYYSRTEKPNL------K----YKYYPSVVELAS--NCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V-~~~~~~~~~~~------~----~~~~~~l~e~~~--~aDvV~~~lp~~~~t~  210 (313)
                      .+|||||+|.||+.+++.+... ++++ .++|++++...      +    ...+.+++++++  +.|+|++++|...+. 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            4899999999999999998875 5665 57888765321      2    234578999986  599999999844322 


Q ss_pred             cccCHHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          211 HIINREVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       211 ~li~~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                          +-....++.|. +++.- ..-++-+.++|.++.++.++.
T Consensus        86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                22334466675 44432 133445667888888887765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.10  E-value=0.00058  Score=62.31  Aligned_cols=89  Identities=16%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCcc--------cc------cc-C-CCHHHHhhcCCEEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNL--------KY------KY-Y-PSVVELASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~--------~~------~~-~-~~l~e~~~~aDvV~~~lp~  205 (313)
                      .++|+|||.|.||..+|..|...|+  +|..+|++++...        +.      .. . .+. +.++.+|+|+++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP   85 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCCC
Confidence            4689999999999999999998898  8999998753211        00      00 1 133 567899999999953


Q ss_pred             Chh---hh--------cc---cCHHHHhccCCCcEEEEcCCCc
Q 021388          206 TEE---TR--------HI---INREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       206 ~~~---t~--------~l---i~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ...   ++        .+   +-++. ....+++++++++-|-
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~~~i-~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIMPNL-VKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCceEEEecCch
Confidence            321   00        01   11222 2236889999887653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00048  Score=66.74  Aligned_cols=108  Identities=18%  Similarity=0.201  Sum_probs=66.1

Q ss_pred             cccccCCCEEEEEcCChHHHHHHHHHHhC-CCCEEEecCCCCCcc------ccc----cC---CCHHHHhhcCCEEEEec
Q 021388          138 LTTKFTGKTVGIIGLGRIGMAVAKRAEAF-SCPINYYSRTEKPNL------KYK----YY---PSVVELASNCHILVVAC  203 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~------~~~----~~---~~l~e~~~~aDvV~~~l  203 (313)
                      .+..+.+++|+|+|.|.+|+.+++.|... |++|.+++|+.++..      +..    ..   .++.++++.+|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            34568899999999999999999999987 789999999764311      111    01   14556788999999999


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      |..... . +   ....++.|..+++++--. -+...+.++.++..+.
T Consensus        97 p~~~~~-~-v---~~a~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~aGv~  138 (467)
T 2axq_A           97 PYTFHP-N-V---VKSAIRTKTDVVTSSYIS-PALRELEPEIVKAGIT  138 (467)
T ss_dssp             CGGGHH-H-H---HHHHHHHTCEEEECSCCC-HHHHHHHHHHHHHTCE
T ss_pred             chhhhH-H-H---HHHHHhcCCEEEEeecCC-HHHHHHHHHHHHcCCE
Confidence            854221 1 1   112345567777764311 1235555555554443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.08  E-value=0.0008  Score=64.81  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCChH--HHHHHHHHHh----CCCCEEEecCCCCCcc--------------ccccCCCHHHHhhcCCEEEEe
Q 021388          143 TGKTVGIIGLGRI--GMAVAKRAEA----FSCPINYYSRTEKPNL--------------KYKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       143 ~g~~igiiG~G~i--G~~iA~~l~~----~G~~V~~~~~~~~~~~--------------~~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+++|+|||.|++  |..++..+..    .| +|..||+.++...              ......++++.++.||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4569999999997  6788887764    46 9999998764210              122346889999999999999


Q ss_pred             cCCC-----------hhhhcccCH------------------------HHHhccCCCcEEEEcCCCccccHHHHHHH
Q 021388          203 CPLT-----------EETRHIINR------------------------EVIDALGPKGVLINIGRGPHVDERELVSA  244 (313)
Q Consensus       203 lp~~-----------~~t~~li~~------------------------~~l~~mk~ga~lIn~~rg~~vd~~al~~a  244 (313)
                      ++..           |.-.++...                        +.+....|++++||.+..--+-+.++.+.
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~  159 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV  159 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence            9632           222233111                        23334468999999987655545555443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.08  E-value=0.00068  Score=62.00  Aligned_cols=87  Identities=10%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc------------cccCCCHHHHhhcCCEEEEecCCCh--
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK------------YKYYPSVVELASNCHILVVACPLTE--  207 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~------------~~~~~~l~e~~~~aDvV~~~lp~~~--  207 (313)
                      .++|+|||.|.||..+|..+...|+  +|..+|..++ ..+            .....++ +.+++||+|+++.....  
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG   91 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSS   91 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCC
Confidence            3799999999999999999987787  8999998764 211            1112456 66899999999973211  


Q ss_pred             --------hhhcccCHHH---HhccCCCcEEEEcCCC
Q 021388          208 --------ETRHIINREV---IDALGPKGVLINIGRG  233 (313)
Q Consensus       208 --------~t~~li~~~~---l~~mk~ga~lIn~~rg  233 (313)
                              .+..++ .+.   +....|++++++++.-
T Consensus        92 ~tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sNP  127 (303)
T 2i6t_A           92 QSYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQP  127 (303)
T ss_dssp             CCHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSSS
T ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCCh
Confidence                    111111 122   2223489999998773

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.07  E-value=0.00039  Score=66.35  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc----CCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY----YPS---VVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      +.+|.|+|+|.+|+.+++.|...|.+|++.|++++..     .+...    ..+   |.++ +.++|+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            3569999999999999999999999999999887531     12211    122   3333 678999999998655443


Q ss_pred             cccCHHHHhccCCCcEEEEc
Q 021388          211 HIINREVIDALGPKGVLINI  230 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~  230 (313)
                      .+  ...+..+.|...+|--
T Consensus        84 ~i--~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEEE
T ss_pred             HH--HHHHHHhCCCCeEEEE
Confidence            33  4455666676555443

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.05  E-value=0.00052  Score=63.53  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             CEEEEEcCChHHHH-HHH-HHH-hCCCCEE-EecCCCCCcc------ccccCCCHHHHhhc--CCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMA-VAK-RAE-AFSCPIN-YYSRTEKPNL------KYKYYPSVVELASN--CHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~-~l~-~~G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~l  212 (313)
                      .+|||||+|.||+. .+. .+. .-++++. ++|++++...      +...+.++++++.+  .|+|++++|...+... 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~-   81 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY-   81 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHH-
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHH-
Confidence            47999999999996 455 333 3467765 7888765321      22346789999976  8999999995443221 


Q ss_pred             cCHHHHhccCCCcEEEEcC--CCccccHHHHHHHHHhCCe
Q 021388          213 INREVIDALGPKGVLINIG--RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~--rg~~vd~~al~~al~~~~l  250 (313)
                          ....++.|.-++.--  --++-+.++|+++.++.++
T Consensus        82 ----~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~  117 (345)
T 3f4l_A           82 ----AKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGL  117 (345)
T ss_dssp             ----HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence                223344554444322  2233444555555555444

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.04  E-value=0.0018  Score=59.28  Aligned_cols=107  Identities=20%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             ccCCCEEEEE-cC-ChHHHHHHHHHHhCCCCEE-EecCCC--CCccccccCCCHHHHhh--cCCEEEEecCCChhhhccc
Q 021388          141 KFTGKTVGII-GL-GRIGMAVAKRAEAFSCPIN-YYSRTE--KPNLKYKYYPSVVELAS--NCHILVVACPLTEETRHII  213 (313)
Q Consensus       141 ~l~g~~igii-G~-G~iG~~iA~~l~~~G~~V~-~~~~~~--~~~~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li  213 (313)
                      -+..++++|| |. |++|+.+++.++..|++++ ..++..  ....+...+.+++|+.+  ..|++++++|.. ....++
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~~   88 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAAI   88 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHHH
Confidence            4667889999 99 9999999999999999844 556653  22345556778999988  899999999932 233333


Q ss_pred             CHHHHhccCCCcEEEEcCCCc-cccHHHHHHHHHhC-Cee
Q 021388          214 NREVIDALGPKGVLINIGRGP-HVDERELVSALVEG-RLG  251 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg~-~vd~~al~~al~~~-~l~  251 (313)
                       ++..+. .- ..+|+.+-|- .-++..+.+..++. .+.
T Consensus        89 -~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           89 -NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             -HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             -HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence             333331 11 3445666663 23455889999887 665

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.99  E-value=0.00091  Score=64.49  Aligned_cols=64  Identities=13%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------c-cc----cCC---CHHHHhhcCCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------K-YK----YYP---SVVELASNCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~-~~----~~~---~l~e~~~~aDvV~~~lp~~  206 (313)
                      .+++|+|+|.|.||+.+++.|...|++|.+++|+.+...      + ..    ...   ++.++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            468999999999999999999999999999998754211      1 10    112   3557788999999999854

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.98  E-value=0.0014  Score=59.70  Aligned_cols=109  Identities=21%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|||.|.+|.++|..|...|.  +|..||+.++...+                 .....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            489999999999999999988787  89999987653210                 011234 7789999999999753


Q ss_pred             C--h-hhh-ccc--CH-------HHHhccCCCcEEEEcCCCccccHHHHHHHHH----hCCeeEEE--ec
Q 021388          206 T--E-ETR-HII--NR-------EVIDALGPKGVLINIGRGPHVDERELVSALV----EGRLGGAG--LD  256 (313)
Q Consensus       206 ~--~-~t~-~li--~~-------~~l~~mk~ga~lIn~~rg~~vd~~al~~al~----~~~l~ga~--lD  256 (313)
                      .  + .++ .++  |.       +.+....|++++++++  +.+|.-..+-.-.    ..++.|.+  ||
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            3  1 111 111  11       2334457899999998  5555544332211    34566653  55

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.97  E-value=0.0024  Score=58.95  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC---------CCCEE-EecCCCCCcc-------------ccccCC--CHHHHhh--cCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF---------SCPIN-YYSRTEKPNL-------------KYKYYP--SVVELAS--NCH  197 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~---------G~~V~-~~~~~~~~~~-------------~~~~~~--~l~e~~~--~aD  197 (313)
                      .+|||||+|.||+.+++.+...         +.+|. ++|++.....             ....+.  ++++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            3799999999999999999764         56654 5576543211             012233  8899885  489


Q ss_pred             EEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc-cHHHHHHHHHhCCee
Q 021388          198 ILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV-DERELVSALVEGRLG  251 (313)
Q Consensus       198 vV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v-d~~al~~al~~~~l~  251 (313)
                      +|+.++|...+... .-+-....|+.|.-+|....+.+. ..+.|.++.++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999996543222 123356778889888887665553 667888888887765

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.96  E-value=0.00079  Score=61.84  Aligned_cols=89  Identities=16%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------ccc-------CCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------YKY-------YPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------~~~-------~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      .++|+|||.|.||.++|..++..|.  +|..+|++++...+        ...       ..+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3699999999999999999987665  79999987642111        000       112346789999999997643


Q ss_pred             hhh-----------hcccC--HHHHhccCCCcEEEEcCC
Q 021388          207 EET-----------RHIIN--REVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t-----------~~li~--~~~l~~mk~ga~lIn~~r  232 (313)
                      ..-           ..++.  .+.+....|++++++++.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            210           01110  112223358889999754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.95  E-value=0.0011  Score=62.40  Aligned_cols=61  Identities=26%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----c---ccCCC---HHHHhhcCCEEEE
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----Y---KYYPS---VVELASNCHILVV  201 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~---~~~~~---l~e~~~~aDvV~~  201 (313)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++.....    .   ....+   +.++++++|+|+.
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            478999999999999999999999999999999976643211    0   01222   6678889999855

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.95  E-value=0.0022  Score=58.95  Aligned_cols=110  Identities=19%  Similarity=0.223  Sum_probs=65.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-------c-------ccCCCHHHHhhcCCEEEEecCCCh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-------Y-------KYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-------~-------~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      .++|+|||.|.+|.+++..+...|.  +|..+|..++...+       .       ....+..+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3689999999999999999998887  89999987653221       0       011122456899999999987432


Q ss_pred             hhhcc------------cC--HHHHhccCCCcEEEEcCCCccccHHH--HHHH--HHhCCeeEE--Eec
Q 021388          208 ETRHI------------IN--REVIDALGPKGVLINIGRGPHVDERE--LVSA--LVEGRLGGA--GLD  256 (313)
Q Consensus       208 ~t~~l------------i~--~~~l~~mk~ga~lIn~~rg~~vd~~a--l~~a--l~~~~l~ga--~lD  256 (313)
                      . .+.            +.  .+.+....|++++++++  ..+|.-.  +.+.  +...++.|.  .||
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            1 111            10  11222336899999974  3444433  3333  234467665  256

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.92  E-value=0.0024  Score=54.63  Aligned_cols=86  Identities=15%  Similarity=0.196  Sum_probs=59.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHH-hCCCCEEEecCCCC-Ccc-------ccc-------cCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAE-AFSCPINYYSRTEK-PNL-------KYK-------YYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~-~~G~~V~~~~~~~~-~~~-------~~~-------~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      |++.|.| .|.||+.+++.|. ..|++|.+.+|+++ ...       ...       ...+++++++.+|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            6799999 6999999999999 89999999998765 221       111       11245677889999998886432


Q ss_pred             hhhcccCHHHHhccCC-C-cEEEEcCCCc
Q 021388          208 ETRHIINREVIDALGP-K-GVLINIGRGP  234 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~-g-a~lIn~~rg~  234 (313)
                       ..   .+..+..|+. | ..||++|...
T Consensus        86 -~~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 -SD---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             -HH---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             -hh---HHHHHHHHHhcCCCeEEEEeece
Confidence             11   3555555543 2 4678877544

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.91  E-value=0.0024  Score=59.40  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc----ccccCCCHHHHhhc--CCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL----KYKYYPSVVELASN--CHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.||+. .+..++.. +++|. ++|++++...    +...+.++++++++  .|+|++|+|...+...    
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~----   81 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEY----   81 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHH----
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH----
Confidence            48999999999997 77777765 67764 6788765421    23346789999976  8999999995433221    


Q ss_pred             HHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          216 EVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       216 ~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                       ....++.|. +++.-- --++-+.++|+++.++.++
T Consensus        82 -~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~  117 (362)
T 3fhl_A           82 -AGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGL  117 (362)
T ss_dssp             -HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence             222333443 333321 2334445556665554443

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.90  E-value=0.0077  Score=54.86  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=98.3

Q ss_pred             HHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccc
Q 021388           60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLT  139 (313)
Q Consensus        60 ~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~  139 (313)
                      .+++++.  -.|......-..+. ..+...+|+|.|..+...-++  .+++=++.+.+++                   |
T Consensus        95 rvls~~~--D~iviR~~~~~~~~-~la~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-------------------g  150 (301)
T 2ef0_A           95 KNLERFV--EGIAARVFRHETVE-ALARHAKVPVVNALSDRAHPL--QALADLLTLKEVF-------------------G  150 (301)
T ss_dssp             HHHTTTC--SEEEEECSSHHHHH-HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH-------------------S
T ss_pred             HHHHHhC--CEEEEecCChHHHH-HHHHHCCCCEEeCCCCccCch--HHHHHHHHHHHHh-------------------C
Confidence            4555553  34544443322221 123345799999765443222  1222223333221                   1


Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccc-------cccCCCHHHHhhcCCEEEEecCCC-----
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLK-------YKYYPSVVELASNCHILVVACPLT-----  206 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-------~~~~~~l~e~~~~aDvV~~~lp~~-----  206 (313)
                       .+.|.+|+++|= +++.++.+..+..+|++|.+..|..-....       .....++++.++++|+|..-.-..     
T Consensus       151 -~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~  229 (301)
T 2ef0_A          151 -GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEA  229 (301)
T ss_dssp             -CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC------
T ss_pred             -CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCccc
Confidence             378999999997 899999999999999999998875532221       334678999999999998844310     


Q ss_pred             -hh------hhcccCHHHHhccCCCcEEEEcC---CCccccHH
Q 021388          207 -EE------TRHIINREVIDALGPKGVLINIG---RGPHVDER  239 (313)
Q Consensus       207 -~~------t~~li~~~~l~~mk~ga~lIn~~---rg~~vd~~  239 (313)
                       +.      ...-++++.++.+|++++|.-+.   ||.=|+.+
T Consensus       230 ~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          230 EREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             --CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             chhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence             01      12456889999999999999888   56544443

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.88  E-value=0.0011  Score=60.75  Aligned_cols=86  Identities=22%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.||..+|..+...|+ +|..+|++++...+                 .....+. +.+++||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999998886 89999987642211                 0112456 6789999999998532


Q ss_pred             hh-----------hhcccCHH---HHhccCCCcEEEEcCC
Q 021388          207 EE-----------TRHIINRE---VIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~-----------t~~li~~~---~l~~mk~ga~lIn~~r  232 (313)
                      ..           +..++ ++   .+....|++++++++-
T Consensus        82 ~~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADIT-RACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             -------CHHHHHHHHHH-HHHHHHHGGGCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEcCC
Confidence            21           00111 12   2233358999999754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.87  E-value=0.0013  Score=60.52  Aligned_cols=94  Identities=15%  Similarity=0.222  Sum_probs=61.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cccC-CCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YKYY-PSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~-~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|+|||.|.||.++|..+...|+  +|..+|+.++...+               .... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            489999999999999999987776  79999998753211               0111 24467889999999987543


Q ss_pred             hh---hh-ccc--C----H---HHHhccCCCcEEEEcCCCccccHHH
Q 021388          207 EE---TR-HII--N----R---EVIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       207 ~~---t~-~li--~----~---~~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      ..   ++ .++  |    +   +.+....|++++++++.  .+|.-.
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~t  125 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN--PLDVMT  125 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS--SHHHHH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC--chhHHH
Confidence            21   11 111  1    1   23334568999999984  444433

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.86  E-value=0.0021  Score=59.23  Aligned_cols=90  Identities=18%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc---------------cc--cCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK---------------YK--YYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~---------------~~--~~~~l~e~~~~aDvV~~~l  203 (313)
                      ...++|+|||.|.+|..+|..+...|+ +|..+|+.++...+               ..  ...+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999998888 99999998753211               11  12344 7889999999997


Q ss_pred             CCC--hh-hhc-cc--C----H---HHHhccCCCcEEEEcCC
Q 021388          204 PLT--EE-TRH-II--N----R---EVIDALGPKGVLINIGR  232 (313)
Q Consensus       204 p~~--~~-t~~-li--~----~---~~l~~mk~ga~lIn~~r  232 (313)
                      +..  +. ++. ++  |    +   +.+....|++++++++.
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            532  11 111 11  1    1   12233458999999984

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.85  E-value=0.0007  Score=58.94  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----ccccc----CCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKY----YPS---VVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~----~~~---l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      ..+++.|+|+|.+|+.+++.|...|+ |.+.|++++..    .+...    ..+   ++++ +.++|.|++++|..+.+ 
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   85 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET-   85 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH-
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH-
Confidence            34689999999999999999999999 99999876531    12111    122   3333 67899999999865433 


Q ss_pred             cccCHHHHhccCCC-cEEEEc
Q 021388          211 HIINREVIDALGPK-GVLINI  230 (313)
Q Consensus       211 ~li~~~~l~~mk~g-a~lIn~  230 (313)
                       +.-...+..+.++ .+++.+
T Consensus        86 -~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           86 -IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             -HHHHHHHHHHCSSSEEEEEC
T ss_pred             -HHHHHHHHHHCCCCeEEEEE
Confidence             2334455666676 444444

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.85  E-value=0.0012  Score=61.47  Aligned_cols=101  Identities=15%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc----ccccCCCHHHHhh--cCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL----KYKYYPSVVELAS--NCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.||+. .++.++.. +++|. ++|++++...    +...+.+++++++  +.|+|++++|...+...    
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~----   81 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEH----   81 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHH----
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHH----
Confidence            48999999999997 67777765 67764 6787764311    2345678999997  78999999996544322    


Q ss_pred             HHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          216 EVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       216 ~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                       ....++.|. +++.-- --++-+.++|+++.++.++
T Consensus        82 -~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~  117 (358)
T 3gdo_A           82 -TMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGV  117 (358)
T ss_dssp             -HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence             223333443 333211 2233445556665555443

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.84  E-value=0.0036  Score=56.61  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=65.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHh----CCCCEE-EecCCCCCc-cccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA----FSCPIN-YYSRTEKPN-LKYKYYPSVVELAS--NCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~----~G~~V~-~~~~~~~~~-~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      .+|||||+|.||+..++.+..    -++++. ++|++.... .+.. ..+++++++  +.|+|++++|...+.     +.
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~-----~~   81 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHE-----DY   81 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH-----HH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHH-----HH
Confidence            489999999999999988864    356654 667654321 1222 468999987  689999999944332     22


Q ss_pred             HHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          217 VIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                      ....++.|. +++.- ..-++-+.++|.++.++.++.
T Consensus        82 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           82 IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            233445554 56653 223445667788888776654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.81  E-value=0.0005  Score=63.60  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ..++|+|||.|.||..+|..+...|+  +|..+|...+...+                .....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999988887  79999987642111                011235555 899999999864


Q ss_pred             CCh---hhh-ccc--C----H---HHHhccCCCcEEEEcCC
Q 021388          205 LTE---ETR-HII--N----R---EVIDALGPKGVLINIGR  232 (313)
Q Consensus       205 ~~~---~t~-~li--~----~---~~l~~mk~ga~lIn~~r  232 (313)
                      ...   .++ .++  |    +   +.+....|++++++++.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            321   111 111  1    1   23334478999999874

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.80  E-value=0.012  Score=53.76  Aligned_cols=91  Identities=8%  Similarity=0.057  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-...              |  .....++++.++++|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            3789999999986  9999999999999999999887543211              1  22357899999999999884


Q ss_pred             cCCC-------hh-----hhcccCHHHHhccCCCcEEEEcC
Q 021388          203 CPLT-------EE-----TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       203 lp~~-------~~-----t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .-..       ++     ...-++++.++.+|++++|.-+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            4310       00     12456888888889999888876

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.80  E-value=0.0015  Score=56.64  Aligned_cols=92  Identities=17%  Similarity=0.049  Sum_probs=61.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCC-CCEEEecCCCCCccc-----c-------ccCCCHHHHhhcCCEEEEecCCCh
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFS-CPINYYSRTEKPNLK-----Y-------KYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~-----~-------~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ...++|.|.| .|.||+.+++.|...| ++|.+++|+++....     .       ....+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            3457899999 7999999999999999 899999987653221     1       112245677899999998876432


Q ss_pred             hhhcccCHHHHhccCC--CcEEEEcCCCcc
Q 021388          208 ETRHIINREVIDALGP--KGVLINIGRGPH  235 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~--ga~lIn~~rg~~  235 (313)
                      ..  ...+..+..|+.  ...||++|....
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112344555543  246888887443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.79  E-value=0.0012  Score=58.53  Aligned_cols=87  Identities=15%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC-------------------CCcc-----------cc--cc-
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE-------------------KPNL-----------KY--KY-  185 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~-------------------~~~~-----------~~--~~-  185 (313)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|+..                   .+..           ..  .. 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            35889999999999999999999999998 688888765                   1100           00  00 


Q ss_pred             ---C--CCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEc
Q 021388          186 ---Y--PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       186 ---~--~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                         .  .+++++++++|+|+.+++ +.+++..+++.....   +..+|+.
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence               1  124567788999988885 456776665544442   3335554

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.79  E-value=0.0019  Score=59.75  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CEEEEEcCChHHH-HHHHHHHhC-CCCEE-EecCCCCCc-------cccccCCCHHHHhhc--CCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGM-AVAKRAEAF-SCPIN-YYSRTEKPN-------LKYKYYPSVVELASN--CHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~-~iA~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~l  212 (313)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++....       .+...+.++++++.+  .|+|++++|...+... 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~-   81 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDL-   81 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHH-
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHH-
Confidence            3799999999998 567767655 67764 778772211       123456789999976  8999999995433221 


Q ss_pred             cCHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          213 INREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       213 i~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                          ....++.|. +++.-- --++-+.++|.++.++.++.
T Consensus        82 ----~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~  118 (349)
T 3i23_A           82 ----AKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVV  118 (349)
T ss_dssp             ----HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ----HHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCe
Confidence                222333442 333211 12334455566666555443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.75  E-value=0.0018  Score=59.84  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=61.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------cccCCCHHHHhhcCCEEEEecCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      -.+++|+|||.|.||.++|..+...|.  ++..+|+.++...+              .....+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            456799999999999999999987777  79999986542111              01122335678999999998743


Q ss_pred             Ch---hhhc-cc--C----H---HHHhccCCCcEEEEcCCCccccHH
Q 021388          206 TE---ETRH-II--N----R---EVIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       206 ~~---~t~~-li--~----~---~~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      ..   .++. ++  |    .   +.+....|++++++++.  .+|.-
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN--Pvdi~  131 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDIL  131 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSS--SHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC--chHHH
Confidence            21   1121 22  1    1   23344568999999974  44443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.75  E-value=0.0016  Score=56.54  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             CEEEEEcCChHHHHHHHH--HHhCCCCEE-EecCCCCCcc----c--cccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKR--AEAFSCPIN-YYSRTEKPNL----K--YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~--l~~~G~~V~-~~~~~~~~~~----~--~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .+++|||.|++|+.+++.  ....|+++. ++|.+++...    +  .....++++++++.|++++++|.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            469999999999999993  446688865 6677665321    1  12346788888777999999994

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.74  E-value=0.0054  Score=59.49  Aligned_cols=97  Identities=12%  Similarity=0.097  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEcCCh----------HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          141 KFTGKTVGIIGLGR----------IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       141 ~l~g~~igiiG~G~----------iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .+.|++|+|+|+--          -...+++.|...|.+|.+|||............++++.++.+|+|++++...+ -+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHSA-YS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCHH-HH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCHH-HH
Confidence            46899999999853          46889999999999999999977632223335688999999999999987543 22


Q ss_pred             cccC-HHHHhccC-CCcEEEEcCCCccccHHHH
Q 021388          211 HIIN-REVIDALG-PKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       211 ~li~-~~~l~~mk-~ga~lIn~~rg~~vd~~al  241 (313)
                      . ++ +.+.+.|+ ++.+++|+ |+- .|.+.+
T Consensus       429 ~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          429 S-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             S-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             h-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            2 33 34455677 48899994 654 454433

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.70  E-value=0.0025  Score=61.83  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=71.9

Q ss_pred             CCEEEEEcCChHH--HHHHHHHH---hC-CCCEEEecCCCCCcc-----------------ccccCCCHHHHhhcCCEEE
Q 021388          144 GKTVGIIGLGRIG--MAVAKRAE---AF-SCPINYYSRTEKPNL-----------------KYKYYPSVVELASNCHILV  200 (313)
Q Consensus       144 g~~igiiG~G~iG--~~iA~~l~---~~-G~~V~~~~~~~~~~~-----------------~~~~~~~l~e~~~~aDvV~  200 (313)
                      .++|+|||.|.||  .++|..+.   ++ |.+|..||+.++...                 ......++++.++.||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            4689999999974  65666664   33 788999999775211                 0112357888899999999


Q ss_pred             EecCCCh-----------hhhcccC----------------------------HHHHhccCCCcEEEEcCCCccccHHHH
Q 021388          201 VACPLTE-----------ETRHIIN----------------------------REVIDALGPKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       201 ~~lp~~~-----------~t~~li~----------------------------~~~l~~mk~ga~lIn~~rg~~vd~~al  241 (313)
                      +++|...           .-.+++.                            .+.+....|++++||++-.--+-+.++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997410           0001100                            123444568999999988766666666


Q ss_pred             HHHHHhCCeeEE
Q 021388          242 VSALVEGRLGGA  253 (313)
Q Consensus       242 ~~al~~~~l~ga  253 (313)
                      .+ +...++.|.
T Consensus       163 ~k-~p~~rviG~  173 (480)
T 1obb_A          163 TR-TVPIKAVGF  173 (480)
T ss_dssp             HH-HSCSEEEEE
T ss_pred             HH-CCCCcEEec
Confidence            55 666677765

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.69  E-value=0.0018  Score=61.93  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             CEEEEEcCChHHH-HHHHHHHhC-CCCE-EEecCCCCCc------cccc-----cCCCHHHHhh--cCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGM-AVAKRAEAF-SCPI-NYYSRTEKPN------LKYK-----YYPSVVELAS--NCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~-~iA~~l~~~-G~~V-~~~~~~~~~~------~~~~-----~~~~l~e~~~--~aDvV~~~lp~~~~  208 (313)
                      .+|||||+|.||+ .+++.+... ++++ .++|++++..      .+..     .+.++++++.  +.|+|++++|...+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            5899999999997 899988765 5675 5788876432      1222     3678999987  79999999995433


Q ss_pred             hhcccCHHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          209 TRHIINREVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                      ..     -....++.|. +++.- .--++-+.++|.++.++.++.
T Consensus       164 ~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          164 AE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             HH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             HH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence            22     2223445554 45442 123344556677777666554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.67  E-value=0.0045  Score=59.53  Aligned_cols=97  Identities=20%  Similarity=0.314  Sum_probs=69.7

Q ss_pred             cccCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecC
Q 021388          140 TKFTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       140 ~~l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ..+.|++|+|+|+.          .-...+++.|...|++|.+|||.....     .+.....++++.++.+|+|++++.
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  397 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTE  397 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence            35789999999997          678899999999999999999976421     123445688899999999999987


Q ss_pred             CChhhhcccCHH-HHhccCCCcEEEEcCCCccccHHHH
Q 021388          205 LTEETRHIINRE-VIDALGPKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       205 ~~~~t~~li~~~-~l~~mk~ga~lIn~~rg~~vd~~al  241 (313)
                      ..+ -+ -++-+ +.+.|+ +.+++|+ |+ +.|.+.+
T Consensus       398 ~~~-f~-~~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          398 WDA-FR-ALDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CTT-TT-SCCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             CHH-hh-cCCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            543 12 23433 444565 5678884 54 3455444

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.67  E-value=0.016  Score=53.06  Aligned_cols=91  Identities=9%  Similarity=0.144  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+.|.+|+++|= +++.++++..+..+|++|.+..|..-...              |  .....+++|.++++|+|..-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            378999999997 89999999999999999999887543111              1  223578999999999998854


Q ss_pred             CC-------Chh-----hhcccCHHHHhccCCCcEEEEcC
Q 021388          204 PL-------TEE-----TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p~-------~~~-----t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      -.       .++     ...-++.+.++.+|++++|.-+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            31       111     12456888999999999988876

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.65  E-value=0.003  Score=60.49  Aligned_cols=101  Identities=12%  Similarity=0.096  Sum_probs=64.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCE-EEecCCCCCcc---------c---cccCC----CHHHHhh--cCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPI-NYYSRTEKPNL---------K---YKYYP----SVVELAS--NCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V-~~~~~~~~~~~---------~---~~~~~----~l~e~~~--~aDvV~~~lp  204 (313)
                      .+|||||+|.||+..++.+... |+++ .++|++++...         +   ...+.    +++++++  +.|+|++++|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            5899999999999999998875 6775 47788765321         1   23355    8999987  5899999999


Q ss_pred             CChhhhcccCHHHHhccCCCc-EEEEc-CCCccccHHHHHHHHHhCCe
Q 021388          205 LTEETRHIINREVIDALGPKG-VLINI-GRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga-~lIn~-~rg~~vd~~al~~al~~~~l  250 (313)
                      ...+..     -..+.|+.|. +++.- .--++-+.++|+++.++.++
T Consensus       101 ~~~h~~-----~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~  143 (444)
T 2ixa_A          101 WEWHHE-----HGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGV  143 (444)
T ss_dssp             GGGHHH-----HHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCC
T ss_pred             cHHHHH-----HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence            543322     2233445554 33331 11233455566666655444

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.65  E-value=0.0034  Score=57.82  Aligned_cols=96  Identities=19%  Similarity=0.244  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc---------------cccC-CCHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK---------------YKYY-PSVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~---------------~~~~-~~l~e~~~~aDvV~~~lp~  205 (313)
                      ..++|+|||.|.||.++|..+...|+ +|..+|+.++...+               .... .+-.+.+++||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            35799999999999999999987777 89999988753211               0111 1224688999999998743


Q ss_pred             C--hh-hhc-cc--C----H---HHHhccCCCcEEEEcCCCccccHHH
Q 021388          206 T--EE-TRH-II--N----R---EVIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       206 ~--~~-t~~-li--~----~---~~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      .  +. ++. ++  |    +   +.+....|++++++++  +.+|.-.
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  129 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV  129 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence            2  11 110 11  1    1   1223345889999995  4455433

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.65  E-value=0.0043  Score=56.34  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCE-EEecCCCC--CccccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPI-NYYSRTEK--PNLKYKYYPSVVELAS--NCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V-~~~~~~~~--~~~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .+++|+|. |++|+.+++.+...|+++ ...++...  ...+...+.+++++..  ..|++++++|.. .+...+ ++.+
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v-~ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV-FEAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH-HHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH-HHHH
Confidence            35778899 999999999999999983 34555431  2234556778999988  899999999832 233332 3333


Q ss_pred             hccCCCcEEEEcCCC-ccccHHHHHHHHHhCCee
Q 021388          219 DALGPKGVLINIGRG-PHVDERELVSALVEGRLG  251 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg-~~vd~~al~~al~~~~l~  251 (313)
                      + .+... +|..+.| +..+.+.+.++.++..+.
T Consensus        92 ~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            3 22222 3444444 334567889988887765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.64  E-value=0.0017  Score=59.94  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------c-------ccCCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------Y-------KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------~-------~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      .++|+|||.|.||.++|..|...|+  +|..+|+..+...+        .       ....+..+.+++||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5789999999999999999988787  79999987642211        0       11122346789999999997532


Q ss_pred             --hh-hhc-cc--C----H---HHHhccCCCcEEEEcCC
Q 021388          207 --EE-TRH-II--N----R---EVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 --~~-t~~-li--~----~---~~l~~mk~ga~lIn~~r  232 (313)
                        +. ++. ++  |    +   +.+....|++++++++.
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence              11 111 11  1    1   22334468999999984

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.62  E-value=0.0025  Score=58.72  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCChHHH-HHHHHHHhC-CCCEE-EecCCCCCccccccCCCHHHHhhc---CCEEEEecCC
Q 021388          143 TGKTVGIIGLGRIGM-AVAKRAEAF-SCPIN-YYSRTEKPNLKYKYYPSVVELASN---CHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~G~iG~-~iA~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~e~~~~---aDvV~~~lp~  205 (313)
                      .-.+|||||+|.||+ ..++.++.. +++|. ++|++++. .+...+.++++++++   .|+|++++|.
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            345899999999998 788888875 67754 67877653 345567899999875   8999999994

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.62  E-value=0.0031  Score=54.43  Aligned_cols=68  Identities=13%  Similarity=0.095  Sum_probs=49.9

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc-c-----cCCCHHHHhhcCCEEEEecCCC
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KY-K-----YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~-~-----~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ...+.|++|.|.|. |.||+.+++.|...|++|.+.+|++....     +. .     ...++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            34689999999997 99999999999999999999998865321     11 1     1145677888999998887643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.61  E-value=0.0026  Score=59.65  Aligned_cols=61  Identities=23%  Similarity=0.398  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c--c---cC---CCHHHHhhcCCEEEE
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y--K---YY---PSVVELASNCHILVV  201 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~--~---~~---~~l~e~~~~aDvV~~  201 (313)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+.+.....  +  .   ..   ..+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            468999999999999999999999999999999987653221  0  0   11   225667888998754

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.61  E-value=0.0085  Score=57.42  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC---Ccccc----------------------------ccCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK---PNLKY----------------------------KYYPS  188 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~---~~~~~----------------------------~~~~~  188 (313)
                      .++.|+++.|=|+|++|..+|+.|...|++|++.+.+..   .+.|.                            ... +
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~  309 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-E  309 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-E
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-c
Confidence            468999999999999999999999999999876542211   00000                            000 0


Q ss_pred             HHH-HhhcCCEEEEecCCChhhhcccCHHHHhccCCC--cEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          189 VVE-LASNCHILVVACPLTEETRHIINREVIDALGPK--GVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       189 l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g--a~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      -++ +-..||+.+-|.     +.+.|+.+....++.+  .++++.+.+.+. .++ .+.|.+..+.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t-~eA-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTT-IEA-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCC-HHH-HHHHHHCCCE
Confidence            111 224699887664     4567888888888754  578888888754 333 3667777776

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.60  E-value=0.015  Score=53.49  Aligned_cols=162  Identities=9%  Similarity=0.096  Sum_probs=100.2

Q ss_pred             CceEEEEeCC-CCC--------CHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHH
Q 021388           45 NIRAVVGNAT-AGA--------DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAV  115 (313)
Q Consensus        45 ~~~~i~~~~~-~~~--------~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~  115 (313)
                      +.+++..... ..+        +..++.++.  -.|.....+-..+. ..+.-.+|+|.|.-+...-++  .+|+=++.+
T Consensus        84 Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~--D~iviR~~~~~~~~-~lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti  158 (325)
T 1vlv_A           84 GGHPIFLSPNDIHLGAKESLEDTARVLGRMV--DAIMFRGYKQETVE-KLAEYSGVPVYNGLTDEFHPT--QALADLMTI  158 (325)
T ss_dssp             TCEEEEECTTTCCTTTSSCHHHHHHHHHTTC--SEEEEESSCHHHHH-HHHHHHCSCEEESCCSSCCHH--HHHHHHHHH
T ss_pred             CCeEEEECCccccCCCCcCHHHHHHHHHHhC--CEEEEECCChHHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHH
Confidence            6677776421 111        134566664  35555544322221 223345899999755432222  122222333


Q ss_pred             HhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCcc------------
Q 021388          116 LRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPNL------------  181 (313)
Q Consensus       116 ~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------  181 (313)
                      .+++                   | .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-...            
T Consensus       159 ~e~~-------------------g-~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~  218 (325)
T 1vlv_A          159 EENF-------------------G-RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVK  218 (325)
T ss_dssp             HHHH-------------------S-CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHH
T ss_pred             HHHh-------------------C-CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHH
Confidence            3221                   1 3789999999986  9999999999999999999887432111            


Q ss_pred             --c--cccCCCHHHHhhcCCEEEEecCCC-------hh-----hhcccCHHHHhcc-CCCcEEEEcC
Q 021388          182 --K--YKYYPSVVELASNCHILVVACPLT-------EE-----TRHIINREVIDAL-GPKGVLINIG  231 (313)
Q Consensus       182 --~--~~~~~~l~e~~~~aDvV~~~lp~~-------~~-----t~~li~~~~l~~m-k~ga~lIn~~  231 (313)
                        |  .....++++.++++|+|..-.-..       ++     ...-++++.++.+ |++++|.-+.
T Consensus       219 ~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          219 ETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             HHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             HcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence              1  223578999999999998854310       10     1245688899989 9999988876

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.59  E-value=0.0082  Score=56.63  Aligned_cols=90  Identities=16%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc---
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA---  220 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~---  220 (313)
                      -.++-|+|.|.+|+++++.++.+|++|.++|+++.....        +-+..+|-++...|          .+.+..   
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~~--------~~fp~a~~~~~~~p----------~~~~~~~~~  265 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATT--------ARFPTADEVVVDWP----------HRYLAAQAE  265 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSCT--------TTCSSSSEEEESCH----------HHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhccc--------ccCCCceEEEeCCh----------HHHHHhhcc
Confidence            458999999999999999999999999999987652211        12345664444433          112222   


Q ss_pred             ---cCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          221 ---LGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       221 ---mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                         +.+++.+|=+.++.-.|...|..+|+.+...
T Consensus       266 ~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~  299 (386)
T 2we8_A          266 AGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIA  299 (386)
T ss_dssp             HTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCS
T ss_pred             ccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCC
Confidence               6678888888899888999999999887444

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.58  E-value=0.0045  Score=56.50  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCE-EEecCCCCCcc------ccccCCCHHHHh----------hcCCEEEEecCCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPI-NYYSRTEKPNL------KYKYYPSVVELA----------SNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V-~~~~~~~~~~~------~~~~~~~l~e~~----------~~aDvV~~~lp~~  206 (313)
                      .++||||+ |.||+..++.++..+.++ .++|++++...      +...+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 789999999999888875 47788765421      123457888887          5799999999954


Q ss_pred             h
Q 021388          207 E  207 (313)
Q Consensus       207 ~  207 (313)
                      .
T Consensus        84 ~   84 (312)
T 3o9z_A           84 L   84 (312)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.56  E-value=0.0059  Score=55.53  Aligned_cols=103  Identities=20%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCC-EEEecCCC--CCccccccCCCHHHHhh--c-CCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCP-INYYSRTE--KPNLKYKYYPSVVELAS--N-CHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~-V~~~~~~~--~~~~~~~~~~~l~e~~~--~-aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      .++.|+|. |++|+.+++.+...|++ |...++..  ....+...+.+++++..  . .|++++++|.. .+...+ ++.
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v-~ea   91 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAV-YEA   91 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHH-HHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHH-HHH
Confidence            35777798 99999999999988998 34556543  22235556788999887  5 99999999832 333333 333


Q ss_pred             HhccCCCcEEEEcCCC-ccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIGRG-PHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg-~~vd~~al~~al~~~~l~  251 (313)
                      .+ ..... +|..+.| +..+.+.+.++.++..+.
T Consensus        92 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           92 VD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            33 22222 3444444 224567888888887765

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.52  E-value=0.0045  Score=52.88  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=47.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc----cc-------ccCCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL----KY-------KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~-------~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|++....    +.       ....++.++++.+|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 599999999999999999999999865422    11       11224567888999998877543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.52  E-value=0.0064  Score=58.38  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=71.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC---------ccccccC--CCHHHHhhc-CCEEEEecCCChh
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP---------NLKYKYY--PSVVELASN-CHILVVACPLTEE  208 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~---------~~~~~~~--~~l~e~~~~-aDvV~~~lp~~~~  208 (313)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|.....         ..+....  ...++++.. +|+|+..-...++
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            478999999999999999999999999999999986531         1122111  123345566 8998876322222


Q ss_pred             hh----------cccCH-HHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCe
Q 021388          209 TR----------HIINR-EVIDALGPKGVL-INIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       209 t~----------~li~~-~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l  250 (313)
                      +.          .++.+ +++..+.+..++ |--+.|+.....-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            11          13333 344444444544 55556888888878888876554

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.50  E-value=0.0028  Score=59.59  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=48.5

Q ss_pred             CEEEEEcCC-hHHHHHHHHHHhC-CCCEE-EecCCCCCc------cccccCCCHHHHhhc--CCEEEEecCCCh
Q 021388          145 KTVGIIGLG-RIGMAVAKRAEAF-SCPIN-YYSRTEKPN------LKYKYYPSVVELASN--CHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G-~iG~~iA~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~e~~~~--aDvV~~~lp~~~  207 (313)
                      .+|||||+| .||+..++.+... ++++. ++|++++..      .+...+.++++++++  .|+|++++|...
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~   76 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF   76 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence            479999999 9999999999875 56654 678876532      134456799999875  999999999543

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.50  E-value=0.013  Score=53.38  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCCh--------
Q 021388          141 KFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTE--------  207 (313)
Q Consensus       141 ~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~--------  207 (313)
                      .+.|.+|+++|=|   ++.++++..+..+|++|.+..|..-...  ......+++|.++++|+|..-.-..+        
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~  223 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQ  223 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhH
Confidence            3789999999975   6999999999999999998876432211  11234689999999999987432111        


Q ss_pred             ---hhhcccCHHHHhccCCCcEEEEcC
Q 021388          208 ---ETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       208 ---~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                         ....-++.+.++.+|++++|.-+.
T Consensus       224 ~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          224 EGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             TTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHHhCCCccCHHHHhhcCCCCEEECCC
Confidence               112346888888899999988876

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.49  E-value=0.0021  Score=62.29  Aligned_cols=110  Identities=6%  Similarity=0.054  Sum_probs=71.0

Q ss_pred             CCEEEEEcCChH-HHHHHHHHHhC-----CCCEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEE
Q 021388          144 GKTVGIIGLGRI-GMAVAKRAEAF-----SCPINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       144 g~~igiiG~G~i-G~~iA~~l~~~-----G~~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~  200 (313)
                      .++|+|||.|.. |.++|..|...     +.+|..||+.++...+                 .....++++.++.||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            459999999998 66677666554     5579999997752110                 112357888999999999


Q ss_pred             EecCCChh---hh----------------------------cccC--HHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388          201 VACPLTEE---TR----------------------------HIIN--REVIDALGPKGVLINIGRGPHVDERELVSALVE  247 (313)
Q Consensus       201 ~~lp~~~~---t~----------------------------~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~  247 (313)
                      +++|....   ++                            .++.  .+.+....|+++++|++-.--+-+.++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11                            0110  123344568999999987665555555555444


Q ss_pred             CCeeEE
Q 021388          248 GRLGGA  253 (313)
Q Consensus       248 ~~l~ga  253 (313)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            466654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.49  E-value=0.0028  Score=58.12  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------c-------ccCCCHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------Y-------KYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------~-------~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ..++|+|||.|.+|.+++..+...|.  +|..+|..++...+        .       ....+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            34699999999999999999987675  79999987532111        0       0111345678999999999864


Q ss_pred             Chh---hh--------cccC--HHHHhccCCCcEEEEcCCCccccHH--HHHHH--HHhCCeeEE
Q 021388          206 TEE---TR--------HIIN--REVIDALGPKGVLINIGRGPHVDER--ELVSA--LVEGRLGGA  253 (313)
Q Consensus       206 ~~~---t~--------~li~--~~~l~~mk~ga~lIn~~rg~~vd~~--al~~a--l~~~~l~ga  253 (313)
                      ...   ++        .++.  .+.+....|++++++++  ..+|.-  .+.+.  +...++.|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            321   11        1110  12233347899999976  444443  33333  333366665

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.49  E-value=0.0046  Score=60.01  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHHhC--CCCE-EEecCCCCCc------ccc---ccCCCHHHHhh--cCCEEEEecCC
Q 021388          144 GKTVGIIGL----GRIGMAVAKRAEAF--SCPI-NYYSRTEKPN------LKY---KYYPSVVELAS--NCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~----G~iG~~iA~~l~~~--G~~V-~~~~~~~~~~------~~~---~~~~~l~e~~~--~aDvV~~~lp~  205 (313)
                      -.+|||||+    |.||+..++.++..  +++| .++|++++..      .+.   ..+.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            358999999    99999999999876  6775 4788876532      122   25678999986  68999999994


Q ss_pred             ChhhhcccCHHHHhccCCC-------cEEEEc-CCCccccHHHHHHHHHhCC
Q 021388          206 TEETRHIINREVIDALGPK-------GVLINI-GRGPHVDERELVSALVEGR  249 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~g-------a~lIn~-~rg~~vd~~al~~al~~~~  249 (313)
                      ..+..  +   ....++.|       .+++.- ..-.+-+.++|+++.++..
T Consensus       119 ~~H~~--~---~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g  165 (479)
T 2nvw_A          119 PEHYE--V---VKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  165 (479)
T ss_dssp             HHHHH--H---HHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             HHHHH--H---HHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence            43322  1   22233444       466664 2233455566777776655

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.48  E-value=0.005  Score=56.34  Aligned_cols=63  Identities=11%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCE-EEecCCCCCcc------ccccCCCHHHHh-----------hcCCEEEEecCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPI-NYYSRTEKPNL------KYKYYPSVVELA-----------SNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V-~~~~~~~~~~~------~~~~~~~l~e~~-----------~~aDvV~~~lp~  205 (313)
                      .++||||+ |.||+..++.++..|.++ .++|++++...      +...+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 789999999999888875 46787765421      123456888876           569999999995


Q ss_pred             Ch
Q 021388          206 TE  207 (313)
Q Consensus       206 ~~  207 (313)
                      ..
T Consensus        84 ~~   85 (318)
T 3oa2_A           84 YL   85 (318)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.46  E-value=0.0068  Score=51.27  Aligned_cols=88  Identities=18%  Similarity=0.261  Sum_probs=58.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc----ccc-----cC-CCHHHHhhcCCEEEEecCCChhhhc--
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL----KYK-----YY-PSVVELASNCHILVVACPLTEETRH--  211 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~~-----~~-~~l~e~~~~aDvV~~~lp~~~~t~~--  211 (313)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|++....    +..     .. .+. +.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL-SDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH-HHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhh-hhhcCCCEEEECCcCCccccchH
Confidence            4789999 599999999999999999999999865321    111     00 112 678899999988865432211  


Q ss_pred             -ccCHHHHhccCC--CcEEEEcCCC
Q 021388          212 -IINREVIDALGP--KGVLINIGRG  233 (313)
Q Consensus       212 -li~~~~l~~mk~--ga~lIn~~rg  233 (313)
                       .....++..|+.  ...+|.+|..
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecc
Confidence             112445566654  3567777654

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.44  E-value=0.0056  Score=57.68  Aligned_cols=65  Identities=14%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCh---HHHHHHHHHHhCC-CCEE--EecCCCCCc------ccc---ccCCCHHHHhhc-------CCEEEE
Q 021388          144 GKTVGIIGLGR---IGMAVAKRAEAFS-CPIN--YYSRTEKPN------LKY---KYYPSVVELASN-------CHILVV  201 (313)
Q Consensus       144 g~~igiiG~G~---iG~~iA~~l~~~G-~~V~--~~~~~~~~~------~~~---~~~~~l~e~~~~-------aDvV~~  201 (313)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|++++..      .+.   ..+.++++++++       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999988887655 6765  578876532      233   456799999875       999999


Q ss_pred             ecCCChh
Q 021388          202 ACPLTEE  208 (313)
Q Consensus       202 ~lp~~~~  208 (313)
                      ++|...+
T Consensus        92 ~tp~~~H   98 (398)
T 3dty_A           92 ATPNGTH   98 (398)
T ss_dssp             ESCGGGH
T ss_pred             CCCcHHH
Confidence            9995543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.44  E-value=0.005  Score=54.54  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC-------------ccc-----------------c--cc-
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP-------------NLK-----------------Y--KY-  185 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~~-  185 (313)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|...-.             ..+                 .  .. 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            35899999999999999999999999998 57777654210             000                 0  00 


Q ss_pred             ---C--CCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          186 ---Y--PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       186 ---~--~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                         .  .+++++++++|+|+.++. +..++..+++.....   +.-+|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence               0  134567788999988876 566777776655442   33355543

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.44  E-value=0.042  Score=52.27  Aligned_cols=150  Identities=17%  Similarity=0.192  Sum_probs=89.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--C--------------ccc----c-ccCCCHHHH-hhcC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--P--------------NLK----Y-KYYPSVVEL-ASNC  196 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~--------------~~~----~-~~~~~l~e~-~~~a  196 (313)
                      .++.|+++.|-|+|++|+..|+.|...|++|+ +.|.+..  .              ..+    + ....+-+++ -.+|
T Consensus       217 ~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~~  296 (424)
T 3k92_A          217 IKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKDC  296 (424)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSCC
T ss_pred             CCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceeccc
Confidence            45899999999999999999999999999975 4554421  0              001    0 011234454 3579


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC-CC--cccCCCc
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV-PE--ELFGLEN  273 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~-~~--~L~~~pn  273 (313)
                      |+++-|..     .+.|+.+....+ .-.+++-.+.+.+ .. +..+.|.+..+. ++=|..-+---. .+  ++.+  |
T Consensus       297 DIliPcA~-----~n~I~~~~a~~l-~ak~V~EgAN~p~-t~-eA~~iL~~rGI~-~~PD~~aNAGGV~vS~~E~~q--n  365 (424)
T 3k92_A          297 DILVPAAI-----SNQITAKNAHNI-QASIVVERANGPT-TI-DATKILNERGVL-LVPDILASAGGVTVSYFEWVQ--N  365 (424)
T ss_dssp             SEEEECSC-----SSCBCTTTGGGC-CCSEEECCSSSCB-CH-HHHHHHHHTTCE-EECHHHHTTHHHHHHHHHHHH--H
T ss_pred             cEEeecCc-----ccccChhhHhhc-CceEEEcCCCCCC-CH-HHHHHHHHCCCE-EECchHhcCCCEEeehhHHHh--c
Confidence            99876653     456788777777 3677788888885 33 445778887776 333322110000 00  1100  0


Q ss_pred             eEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          274 VVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       274 v~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                         ..+..+..++..+++.+.+.+.+.+.+
T Consensus       366 ---~~~~~w~~eeV~~~l~~~m~~~~~~v~  392 (424)
T 3k92_A          366 ---NQGYYWSEEEVAEKLRSVMVSSFETIY  392 (424)
T ss_dssp             ---HHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence               023445556666666666666665544

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.42  E-value=0.012  Score=54.43  Aligned_cols=160  Identities=11%  Similarity=0.059  Sum_probs=101.6

Q ss_pred             CceEEEEeCC-CCC--------CHHHHhhCCCccEEEEcCcCCCcCChhh-hhhcCcEEEcCCCCCh---HHHHHHHHHH
Q 021388           45 NIRAVVGNAT-AGA--------DAELIDALPKLEIVSSFSVGLDKVDMVK-CKEKGVRVTNTPDVLT---DDVADLAIGL  111 (313)
Q Consensus        45 ~~~~i~~~~~-~~~--------~~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~---~~vAE~al~~  111 (313)
                      +.+++..... ..+        +..++.++.  -.|...+.+  +=.+.. +.-.+|+|.|.-+...   .+.|+.    
T Consensus        71 Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~--D~IviR~~~--~~~~~~lA~~s~vPVINa~~~~~HPtQ~LaDl----  142 (335)
T 1dxh_A           71 GANVTYIDPNSSQIGHKESMKDTARVLGRMY--DAIEYRGFK--QEIVEELAKFAGVPVFNGLTDEYHPTQMLADV----  142 (335)
T ss_dssp             TCEEEEECTTTCCBTTTBCHHHHHHHHHHHC--SEEEEECSC--HHHHHHHHHHSSSCEEEEECSSCCHHHHHHHH----
T ss_pred             CCeEEEECCccccCcCCCcHHHHHHHHHhhC--CEEEEecCC--hhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHH----
Confidence            6777776421 111        234555653  355555433  222333 3345899999755433   333333    


Q ss_pred             HHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCcc--------
Q 021388          112 MLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPNL--------  181 (313)
Q Consensus       112 ~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------  181 (313)
                       +.+.+++                   |..+.|.+|+++|=|  +++++++..+..+|++|.+..|..-...        
T Consensus       143 -~Ti~e~~-------------------g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~  202 (335)
T 1dxh_A          143 -LTMREHS-------------------DKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCK  202 (335)
T ss_dssp             -HHHHHTC-------------------SSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHH
T ss_pred             -HHHHHHc-------------------CCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHH
Confidence             3332211                   214789999999996  9999999999999999998887542111        


Q ss_pred             ------c--cccCCCHHHHhhcCCEEEEecCC--------Chh-----hhcccCHHHHhcc-CCCcEEEEcCC
Q 021388          182 ------K--YKYYPSVVELASNCHILVVACPL--------TEE-----TRHIINREVIDAL-GPKGVLINIGR  232 (313)
Q Consensus       182 ------~--~~~~~~l~e~~~~aDvV~~~lp~--------~~~-----t~~li~~~~l~~m-k~ga~lIn~~r  232 (313)
                            |  .....++++.++++|+|..-.-.        ..+     ...-++.+.++.+ ||+++|.-+.-
T Consensus       203 ~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          203 KFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             HHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             HHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence                  1  22357899999999999885431        011     1245688999999 99999988764

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.41  E-value=0.0037  Score=57.45  Aligned_cols=107  Identities=15%  Similarity=0.189  Sum_probs=65.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++|+|||.|.+|.+++..+...+.  ++..+|+..+...+              .....+..+.++.||+|+++.+....
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            699999999999999999987676  79999986542211              00112345678999999999864321


Q ss_pred             h---h--------cccC--HHHHhccCCCcEEEEcCCCccccH--HHHHHH--HHhCCeeEE
Q 021388          209 T---R--------HIIN--REVIDALGPKGVLINIGRGPHVDE--RELVSA--LVEGRLGGA  253 (313)
Q Consensus       209 t---~--------~li~--~~~l~~mk~ga~lIn~~rg~~vd~--~al~~a--l~~~~l~ga  253 (313)
                      -   +        .++.  .+.+....|++++++++  +.+|.  ..+.+.  +...++.|.
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEec
Confidence            1   0        1110  12233347899999984  44444  333333  333366655

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.41  E-value=0.023  Score=52.49  Aligned_cols=90  Identities=8%  Similarity=0.050  Sum_probs=67.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +.|.+|+++|= +++.++++..+..+|++|.+..|..-...              +  .....+++|.++++|+|..-.-
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            78999999986 57889999999999999998877542211              1  2235689999999999987553


Q ss_pred             CCh------h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388          205 LTE------E-----TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       205 ~~~------~-----t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ...      +     ...-++.+.++.+|++++|.-+.
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            221      0     12356889999999999998887

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.40  E-value=0.0045  Score=57.65  Aligned_cols=86  Identities=23%  Similarity=0.325  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------cccccc---CCC---HHHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKY---YPS---VVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~---~~~---l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++++      ..++..   ..+   +.++....|+|+-++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            6889999999999999999999999999999877643      222211   112   22334468999888864321  


Q ss_pred             cccCHHHHhccCCCcEEEEcCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                         -+..+..|+++..+|+++..
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCEEEEEccC
Confidence               25567888888899888753

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.39  E-value=0.0067  Score=55.89  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             CEEEEEcCC-hHHHHHHHHHHhC--CCCE-EEecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLG-RIGMAVAKRAEAF--SCPI-NYYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G-~iG~~iA~~l~~~--G~~V-~~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~  211 (313)
                      .+|||||+| .+|+..++.++..  ++++ .++|++++...      +. ..+.+++++++  +.|+|++++|...+.. 
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~-   97 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   97 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH-
Confidence            489999999 8999999999876  4665 57888765321      22 34678999986  5899999999543322 


Q ss_pred             ccCHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCe
Q 021388          212 IINREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRL  250 (313)
Q Consensus       212 li~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l  250 (313)
                       +   ....++.|. +++.-- --++-+.++|.++.++.++
T Consensus        98 -~---~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  134 (340)
T 1zh8_A           98 -F---IEKALRKGVHVICEKPISTDVETGKKVVELSEKSEK  134 (340)
T ss_dssp             -H---HHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred             -H---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence             1   222333443 334311 1233444556665555443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.38  E-value=0.015  Score=55.68  Aligned_cols=87  Identities=9%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHHhC-CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          142 FTGKTVGIIGLG----------RIGMAVAKRAEAF-SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       142 l~g~~igiiG~G----------~iG~~iA~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      +.|++|+|+|+.          .-...+++.|... |++|.+|||.....   ....++++.++.+|+|++++...+ -+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~~~~-f~  388 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSDHSE-FK  388 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSCCGG-GT
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecCCHH-Hh
Confidence            589999999985          3578899999999 99999999976543   234678899999999999987543 22


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCcc
Q 021388          211 HIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      . ++-+.+..|+ +.+++|+ |+-+
T Consensus       389 ~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          389 N-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             S-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             c-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            2 3334446676 6788985 5433

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.38  E-value=0.0037  Score=57.40  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC--CCccc---------------ccc-CCCHHHHhhcCCEEEEe
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE--KPNLK---------------YKY-YPSVVELASNCHILVVA  202 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~--~~~~~---------------~~~-~~~l~e~~~~aDvV~~~  202 (313)
                      ...++|+|||.|.||..+|..+...|+ +|..+|+.+  ....+               ... ..+-.+.+++||+|+++
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia   85 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT   85 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe
Confidence            356799999999999999999998899 999999983  21111               000 11224678999999999


Q ss_pred             cCCC--hh-hh-ccc--C----H---HHHhccCCCcEEEEcCCCccccHHH
Q 021388          203 CPLT--EE-TR-HII--N----R---EVIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       203 lp~~--~~-t~-~li--~----~---~~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      ....  |. ++ .++  |    +   +.+....|++++++++.  .+|.-.
T Consensus        86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN--Pvd~~t  134 (315)
T 3tl2_A           86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN--PVDAMT  134 (315)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC--hHHHHH
Confidence            7422  21 11 111  1    1   12333468999999984  344433

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.37  E-value=0.0077  Score=54.10  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHHh-CCCCEEE-ecCCCCCc------------cccccCCCHHHHhhcCCEEEEecCCChh-
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEA-FSCPINY-YSRTEKPN------------LKYKYYPSVVELASNCHILVVACPLTEE-  208 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~-~G~~V~~-~~~~~~~~------------~~~~~~~~l~e~~~~aDvV~~~lp~~~~-  208 (313)
                      .+|+|+| +|.||+.+++.+.. -++++.+ +|++....            .+.....++++++.++|+|+-+.+  |+ 
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~--p~a   85 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL--PEG   85 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC--HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC--HHH
Confidence            5899999 99999999998874 4677654 78764321            123345789999999999998875  33 


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      +...    ....++.|.-+|-...|
T Consensus        86 ~~~~----~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           86 TLVH----LDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             HHHH----HHHHHHHTCEEEECCCC
T ss_pred             HHHH----HHHHHHcCCCEEEECCC
Confidence            2222    22224455556655555

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.36  E-value=0.0043  Score=57.66  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhC--------CCCE-EEecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAF--------SCPI-NYYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~--------G~~V-~~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp  204 (313)
                      +--+|||||+|.||+.-++.++..        +++| .++|++++...      +. ..+.+++++++  +.|+|++++|
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP  103 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP  103 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence            345899999999999877766542        4565 46788776432      22 34678999986  4799999999


Q ss_pred             CChh
Q 021388          205 LTEE  208 (313)
Q Consensus       205 ~~~~  208 (313)
                      ..-+
T Consensus       104 ~~~H  107 (393)
T 4fb5_A          104 NQFH  107 (393)
T ss_dssp             GGGH
T ss_pred             hHHH
Confidence            5443

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.34  E-value=0.0096  Score=50.66  Aligned_cols=62  Identities=13%  Similarity=0.148  Sum_probs=46.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccc---c-------cc-CCCHHHHhhcCCEEEEecCCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLK---Y-------KY-YPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---~-------~~-~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|+......   .       .. ..++.++++.+|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            4788998 8999999999999999999999988654221   1       11 223556778899998887644

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.33  E-value=0.0046  Score=56.99  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-------c-------ccCCCHHHHhhcCCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-------Y-------KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-------~-------~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ..++|+|||.|.+|.+++..+...+.  ++..+|+..+...+       .       ....+..+.++.||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            34799999999999999999987665  79999986542211       0       01123456799999999998643


Q ss_pred             hhh---h--------cccC--HHHHhccCCCcEEEEcCCCccccHHH--HHHH--HHhCCeeEE
Q 021388          207 EET---R--------HIIN--REVIDALGPKGVLINIGRGPHVDERE--LVSA--LVEGRLGGA  253 (313)
Q Consensus       207 ~~t---~--------~li~--~~~l~~mk~ga~lIn~~rg~~vd~~a--l~~a--l~~~~l~ga  253 (313)
                      ..-   +        .++.  .+.+....|++++++++  +.+|.-.  +.+.  +...++.|.
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEEc
Confidence            211   0        1110  11222336899999984  4444433  3232  233356555

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.33  E-value=0.0029  Score=58.30  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc------cc-ccCCCHHHHhhc--CCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL------KY-KYYPSVVELASN--CHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~e~~~~--aDvV~~~lp~~~  207 (313)
                      .++||||+|.||+. .+..++.. +++|. ++|++++...      +. ..+.++++++++  .|+|++++|...
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~   98 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQ   98 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence            38999999999986 56677655 67765 6788765322      22 346799999854  799999999543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.30  E-value=0.016  Score=52.42  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=74.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--CccccccCCCHHHHhhcCCEEEEecCCCh----------hh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVVACPLTE----------ET  209 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~e~~~~aDvV~~~lp~~~----------~t  209 (313)
                      +.|++|.++|.........+.|...|++|.+......  ...+.....++.+.++++|+|+...|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            6788999999999999999999999999987643221  11233334456777889999886444321          12


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ...++++.++.++++.+++ ++    +|..++.+++.+.++.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCC
T ss_pred             CccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCE
Confidence            3336788999999988877 33    3777877777777776

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.0088  Score=56.78  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCh---HHHHHHHHHHhCC-CCEE--EecCCCCCcc------cc---ccCCCHHHHhhc-------CCEEEE
Q 021388          144 GKTVGIIGLGR---IGMAVAKRAEAFS-CPIN--YYSRTEKPNL------KY---KYYPSVVELASN-------CHILVV  201 (313)
Q Consensus       144 g~~igiiG~G~---iG~~iA~~l~~~G-~~V~--~~~~~~~~~~------~~---~~~~~l~e~~~~-------aDvV~~  201 (313)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|++++...      +.   ..+.++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999888887665 6765  5788765321      23   356799999876       999999


Q ss_pred             ecCCChhhhcccCHHHHhccCCCc-EEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          202 ACPLTEETRHIINREVIDALGPKG-VLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       202 ~lp~~~~t~~li~~~~l~~mk~ga-~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      ++|...+..     -....++.|. +++.-- --++-+.++|+++.++.++.
T Consensus       117 ~tp~~~H~~-----~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  163 (417)
T 3v5n_A          117 VTPNHVHYA-----AAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDAL  163 (417)
T ss_dssp             CSCTTSHHH-----HHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSC
T ss_pred             CCCcHHHHH-----HHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCE
Confidence            999654422     1223344443 333311 22334455555555554443

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.28  E-value=0.016  Score=52.79  Aligned_cols=145  Identities=12%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             HHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcC-CCCCh---HHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC
Q 021388           60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT-PDVLT---DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD  135 (313)
Q Consensus        60 ~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~-~~~~~---~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~  135 (313)
                      .++.++.+  .|......-..+. ..+...+|+|.|. -|...   .+.++.     +.+.+++                
T Consensus        89 rvls~~~D--~iviR~~~~~~~~-~la~~~~vPVINaG~g~~~HPtQ~LaDl-----~Ti~e~~----------------  144 (299)
T 1pg5_A           89 RMLNNYSD--GIVMRHKYDGASR-FASEISDIPVINAGDGKHEHPTQAVIDI-----YTINKHF----------------  144 (299)
T ss_dssp             HHHHHHCS--EEEEEESSBTHHH-HHHHHCSSCEEEEEETTTBCHHHHHHHH-----HHHHHHH----------------
T ss_pred             HHHHHhCC--EEEEeCCChhHHH-HHHHhCCCCEEeCCCCCCcCcHHHHHHH-----HHHHHHh----------------
Confidence            45555543  4444443333221 2234457999998 44443   444443     3332221                


Q ss_pred             cccccccCCCEEEEEcC---ChHHHHHHHHHHhC-CCCEEEecCCCCCc-------ccc--ccCCCHHHHhhcCCEEEEe
Q 021388          136 YKLTTKFTGKTVGIIGL---GRIGMAVAKRAEAF-SCPINYYSRTEKPN-------LKY--KYYPSVVELASNCHILVVA  202 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~---G~iG~~iA~~l~~~-G~~V~~~~~~~~~~-------~~~--~~~~~l~e~~~~aDvV~~~  202 (313)
                         | .+.|.+|+++|=   |++.++++..+..+ |++|.+..|..-..       .|.  ....++++.++++|+|..-
T Consensus       145 ---g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~  220 (299)
T 1pg5_A          145 ---N-TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT  220 (299)
T ss_dssp             ---S-CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             ---C-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeC
Confidence               1 378999999998   59999999999999 99999887743211       122  2346899999999999887


Q ss_pred             cCCChh-------h----hcccCHHHHhccCCCcEEEEcCC
Q 021388          203 CPLTEE-------T----RHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       203 lp~~~~-------t----~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .-..+.       .    ..-++++.++.+|++++|.-+.-
T Consensus       221 ~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          221 RIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             CCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             CcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence            643311       0    24568888888888888887753

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.28  E-value=0.0043  Score=57.37  Aligned_cols=99  Identities=17%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC---------CCCE-EEecCCCCCcccc---ccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF---------SCPI-NYYSRTEKPNLKY---KYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~---------G~~V-~~~~~~~~~~~~~---~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+|||||+|.||+.+++.+...         +++| .++|++..+..+.   ....++++++ +.|+|+.|+|.......
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            3799999999999999998765         4565 4667765543322   2355777888 99999999985532221


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhC
Q 021388          212 IINREVIDALGPKGVLINIGRGPH-VDERELVSALVEG  248 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~  248 (313)
                      .    ....|+.|.-+|...-..+ -..+.|.++.++.
T Consensus        83 ~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 L----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            1    2335566666665432222 3557777777776

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.26  E-value=0.065  Score=50.99  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC-------Cccccc--------------------cCCCHH
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK-------PNLKYK--------------------YYPSVV  190 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~-------~~~~~~--------------------~~~~l~  190 (313)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+++       .+.|..                    ...+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            346889999999999999999999999999998 4555521       000100                    001122


Q ss_pred             HH-hhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          191 EL-ASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       191 e~-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ++ -..||+++-|..     .+.|+.+....+ ...+++-.+.+.+. .+ -.+.|+++.+.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            32 246898877653     456888888888 46788888888864 33 34556666665

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.25  E-value=0.0058  Score=54.23  Aligned_cols=62  Identities=19%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-cc-------ccCCCHHHHhhc-CCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-KY-------KYYPSVVELASN-CHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-~~-------~~~~~l~e~~~~-aDvV~~~lp  204 (313)
                      .+++|.|.|.|.||+.+++.|...|++|.+.+|+..... +.       ....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            357899999999999999999999999999998765321 11       112234556666 999977653

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.23  E-value=0.036  Score=50.61  Aligned_cols=91  Identities=10%  Similarity=0.158  Sum_probs=66.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc--------cc--cccCCCHHHHhhcCCEEEEec----CC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN--------LK--YKYYPSVVELASNCHILVVAC----PL  205 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------~~--~~~~~~l~e~~~~aDvV~~~l----p~  205 (313)
                      .+.|.+|+++|= +++.++++..+..+|++|.+..|..-..        .+  .....+++|.++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            378999999985 5788999999999999999887643211        11  223578999999999998743    10


Q ss_pred             Ch--------hhhcccCHHHHhccCCCcEEEEcC
Q 021388          206 TE--------ETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       206 ~~--------~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ..        -...-++.+.++.+|++++|.-+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            00        012456888999999999988876

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.23  E-value=0.0032  Score=57.58  Aligned_cols=85  Identities=18%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCCCh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      +|+|||.|.||.++|..+...|+ +|..+|+..+...+                 .....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999999986677 69999988653211                 0111344 67899999999975432


Q ss_pred             h-----------hhcccCHHH---HhccCCCcEEEEcCC
Q 021388          208 E-----------TRHIINREV---IDALGPKGVLINIGR  232 (313)
Q Consensus       208 ~-----------t~~li~~~~---l~~mk~ga~lIn~~r  232 (313)
                      .           +..++ .+.   +....|++++|+++.
T Consensus        80 k~G~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTM-ADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEeCC
Confidence            1           11111 112   223358999999854

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.20  E-value=0.012  Score=54.29  Aligned_cols=149  Identities=10%  Similarity=0.053  Sum_probs=94.6

Q ss_pred             HHHhhCCCccEEEEcCcCCCcCChhh-hhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCccc
Q 021388           60 ELIDALPKLEIVSSFSVGLDKVDMVK-CKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKL  138 (313)
Q Consensus        60 ~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~  138 (313)
                      .++.++.  -.|...+.+-..  +.. +.-.+|+|.|.-+...-++  .+|+=++.+.+++                  .
T Consensus        94 rvLs~~~--D~IviR~~~~~~--~~~lA~~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~------------------~  149 (333)
T 1duv_G           94 RVLGRMY--DGIQYRGYGQEI--VETLAEYASVPVWNGLTNEFHPT--QLLADLLTMQEHL------------------P  149 (333)
T ss_dssp             HHHTTTC--SEEEEECSCHHH--HHHHHHHHSSCEEESCCSSCCHH--HHHHHHHHHHHHS------------------T
T ss_pred             HHHHHhC--CEEEEEcCCchH--HHHHHHhCCCCeEcCCCCCCCch--HHHHHHHHHHHHh------------------c
Confidence            4555553  355555433222  323 3345899999765443222  1222223333321                  0


Q ss_pred             ccccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEE
Q 021388          139 TTKFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILV  200 (313)
Q Consensus       139 ~~~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~  200 (313)
                      |..+.|.+|+++|=|  +++++++..+..+|++|.+..|..-...              |  .....++++.++++|+|.
T Consensus       150 g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvy  229 (333)
T 1duv_G          150 GKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIY  229 (333)
T ss_dssp             TCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEE
T ss_pred             CCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEE
Confidence            214789999999986  9999999999999999998887432111              1  223578999999999998


Q ss_pred             EecCCC-----h--h------hhcccCHHHHhcc-CCCcEEEEcCC
Q 021388          201 VACPLT-----E--E------TRHIINREVIDAL-GPKGVLINIGR  232 (313)
Q Consensus       201 ~~lp~~-----~--~------t~~li~~~~l~~m-k~ga~lIn~~r  232 (313)
                      .-.-..     +  .      ...-++.+.++.+ ||+++|.-+.-
T Consensus       230 td~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          230 TDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             ECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             eCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            854311     0  0      1245688999999 99999988764

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.20  E-value=0.0066  Score=56.07  Aligned_cols=106  Identities=12%  Similarity=0.073  Sum_probs=67.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--------CCCE-EEecCCCCCccc---------------c-ccCC---CHHHHh-hc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--------SCPI-NYYSRTEKPNLK---------------Y-KYYP---SVVELA-SN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--------G~~V-~~~~~~~~~~~~---------------~-~~~~---~l~e~~-~~  195 (313)
                      .+|||||+|.||+.+++.+...        +++| .++|++......               . ....   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4799999999999999998753        3565 466776542211               1 1233   788877 36


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG  251 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~  251 (313)
                      .|+|+.++|.. .+.+.--+-....|+.|.-+|...-..+ .+.+.|.++.++.+..
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999964 1111111234556777877776544333 3446777777666554

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.20  E-value=0.0088  Score=57.19  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=65.8

Q ss_pred             CEEEEEcC----ChHHHHHHHHHHhC--CCCE-EEecCCCCCc------cccc---cCCCHHHHhh--cCCEEEEecCCC
Q 021388          145 KTVGIIGL----GRIGMAVAKRAEAF--SCPI-NYYSRTEKPN------LKYK---YYPSVVELAS--NCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~----G~iG~~iA~~l~~~--G~~V-~~~~~~~~~~------~~~~---~~~~l~e~~~--~aDvV~~~lp~~  206 (313)
                      .+|||||+    |.||+..++.++..  ++++ .++|++++..      .+..   .+.+++++++  +.|+|++++|..
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence            58999999    99999999999886  6775 5788876532      1222   4678999986  689999999944


Q ss_pred             hhhhcccCHHHHhccCCC-------cEEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          207 EETRHIINREVIDALGPK-------GVLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~g-------a~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                      .+...     ....++.|       .+++.- .--++-+.++|+++.++.++.
T Consensus       101 ~H~~~-----~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~  148 (438)
T 3btv_A          101 SHYEV-----VMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQ  148 (438)
T ss_dssp             HHHHH-----HHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCE
T ss_pred             HHHHH-----HHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCe
Confidence            33221     12223333       455552 223344556666666655543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.20  E-value=0.068  Score=51.07  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Cccc------------------c--ccCCCHHHHh-hc
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLK------------------Y--KYYPSVVELA-SN  195 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~------------------~--~~~~~l~e~~-~~  195 (313)
                      .++.|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+..  .+.|                  +  ....+.++++ ..
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~~  310 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLP  310 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTCC
T ss_pred             CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcCC
Confidence            46899999999999999999999999999988 4454311  0000                  0  0112345554 47


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ||+++-|..     .+.++.+....+ ...+++-.+.+.+. .++ .+.|.+..+.
T Consensus       311 ~DIlvPcA~-----~n~i~~~na~~l-~ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          311 VEFLVPAAL-----EKQITEQNAWRI-RARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             CSEEEECSS-----SSCBCTTTGGGC-CCSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             CcEEEecCC-----cCccchhhHHHc-CCcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            999988764     345677777777 36777888888764 443 4566666665

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.15  E-value=0.019  Score=52.42  Aligned_cols=36  Identities=28%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ...++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34678999998 9999999999999999999999876

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.14  E-value=0.0099  Score=49.56  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|++....     ...       ...++.++++.+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            478999997 99999999999999999999998765321     111       1124566788999998887643

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.14  E-value=0.011  Score=50.10  Aligned_cols=88  Identities=13%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc------CCCHHHHhhcCCEEEEecCCC--h---
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY------YPSVVELASNCHILVVACPLT--E---  207 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~l~e~~~~aDvV~~~lp~~--~---  207 (313)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|++....     +...      ..+. +.+..+|+|+.+....  +   
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   79 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRG   79 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchh
Confidence            46889987 99999999999999999999998764311     1110      0112 6788999998887542  1   


Q ss_pred             hhhcccCHHHHhccCC-CcEEEEcCCC
Q 021388          208 ETRHIINREVIDALGP-KGVLINIGRG  233 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~-ga~lIn~~rg  233 (313)
                      ...-.....++..|+. |..+|++|..
T Consensus        80 ~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           80 YLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             hHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            1111112445566643 4677877653

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.14  E-value=0.038  Score=50.69  Aligned_cols=91  Identities=11%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+.|.+|+++|= +++.++.+..+..+|++|.+..|..-...              +  .....++++.++++|+|..-.
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            378999999986 67889999999999999998877542111              1  223568999999999998764


Q ss_pred             CCChh------------hhcccCHHHHhccCCCcEEEEcC
Q 021388          204 PLTEE------------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p~~~~------------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      -....            ...-++.+.++.+|++++|.-+.
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            32110            12346888898899999988875

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.13  E-value=0.0067  Score=56.03  Aligned_cols=63  Identities=21%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------cc------------------ccCCCHHHHhhcCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------KY------------------KYYPSVVELASNCHI  198 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~~------------------~~~~~l~e~~~~aDv  198 (313)
                      .+|||+|+|.||+.+++.+... ++++. +.|++++...      +.                  ....+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3799999999999999999865 45654 4566543210      10                  223578888889999


Q ss_pred             EEEecCCCh
Q 021388          199 LVVACPLTE  207 (313)
Q Consensus       199 V~~~lp~~~  207 (313)
                      |+.|+|...
T Consensus        83 V~~aTp~~~   91 (334)
T 2czc_A           83 IVDATPGGI   91 (334)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCccc
Confidence            999999654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.12  E-value=0.0033  Score=59.63  Aligned_cols=111  Identities=19%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC---CCEEEecCCCCCcc------------ccc-------cCCCHHHHhhc--CCEEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS---CPINYYSRTEKPNL------------KYK-------YYPSVVELASN--CHILV  200 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G---~~V~~~~~~~~~~~------------~~~-------~~~~l~e~~~~--aDvV~  200 (313)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+.++..            ...       ...++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   38999998764311            010       11346677777  89999


Q ss_pred             EecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc--------HHHHHHHHHhCCeeEEEecCCCCCC
Q 021388          201 VACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD--------ERELVSALVEGRLGGAGLDVFENEP  262 (313)
Q Consensus       201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd--------~~al~~al~~~~l~ga~lDV~~~Ep  262 (313)
                      .++|.... ..++ +   ..++.|.-++|++--...+        ..++.++.++.++.  .+.-....|
T Consensus        82 n~ag~~~~-~~v~-~---a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~--~i~g~G~~P  144 (405)
T 4ina_A           82 NIALPYQD-LTIM-E---ACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVM--ALLGSGFDP  144 (405)
T ss_dssp             ECSCGGGH-HHHH-H---HHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCE--EEECCBTTT
T ss_pred             ECCCcccC-hHHH-H---HHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCE--EEEcCCCCc
Confidence            98873221 1111 2   2234566677764432221        13556666555554  333334444

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.11  E-value=0.0068  Score=56.02  Aligned_cols=91  Identities=15%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c------ccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y------KYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~------~~~~~l~e~~~~aDvV~~~  202 (313)
                      ....++|+|||.|.||..+|..+...|.  ++..+|+..+...+          +      ....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999999987777  79999987542111          0      1123444 58999999998


Q ss_pred             cCCC--h-hhhc-cc--C-------HHHHhccCCCcEEEEcCC
Q 021388          203 CPLT--E-ETRH-II--N-------REVIDALGPKGVLINIGR  232 (313)
Q Consensus       203 lp~~--~-~t~~-li--~-------~~~l~~mk~ga~lIn~~r  232 (313)
                      ....  | .++. ++  |       .+.+....|++++++++.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6432  1 1221 22  1       122334578999999984

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.11  E-value=0.0099  Score=54.32  Aligned_cols=145  Identities=13%  Similarity=0.137  Sum_probs=91.2

Q ss_pred             HHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCC-CCC---hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC
Q 021388           59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTP-DVL---TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG  134 (313)
Q Consensus        59 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~-~~~---~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~  134 (313)
                      ..++.++.  -.|......-..+ ...+...+|+|.|.. |..   ..+.|+.     +.+.+++               
T Consensus        94 arvls~~~--D~iviR~~~~~~~-~~la~~~~vPVINag~g~~~HPtQ~LaDl-----~Ti~e~~---------------  150 (308)
T 1ml4_A           94 IKTVEQYC--DVIVIRHPKEGAA-RLAAEVAEVPVINAGDGSNQHPTQTLLDL-----YTIKKEF---------------  150 (308)
T ss_dssp             HHHHTTTC--SEEEEEESSTTHH-HHHHHTCSSCEEEEEETTSCCHHHHHHHH-----HHHHHHS---------------
T ss_pred             HHHHHHhC--cEEEEecCChhHH-HHHHHhCCCCEEeCccCCccCcHHHHHHH-----HHHHHHh---------------
Confidence            35566664  3444444333222 122334579999963 232   3444443     3332211               


Q ss_pred             CcccccccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEE
Q 021388          135 DYKLTTKFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEKPNL----------KY--KYYPSVVELASNCHIL  199 (313)
Q Consensus       135 ~~~~~~~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV  199 (313)
                          | .+.|.+|+++|=   |++.++++..+..+|++|.+..|..-...          +.  ....++++.++++|+|
T Consensus       151 ----g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvv  225 (308)
T 1ml4_A          151 ----G-RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVL  225 (308)
T ss_dssp             ----S-CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEE
T ss_pred             ----C-CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEE
Confidence                1 378999999998   48999999999999999998887443211          22  2346899999999999


Q ss_pred             EEecCCCh------hh-----hcccCHHHHhccCCCcEEEEcC
Q 021388          200 VVACPLTE------ET-----RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       200 ~~~lp~~~------~t-----~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ..-.-..+      +-     ..-++++.++.+|++++|.-+.
T Consensus       226 yt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          226 YVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             EECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            87553211      10     2345777888888888887765

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.09  E-value=0.017  Score=52.22  Aligned_cols=84  Identities=13%  Similarity=0.056  Sum_probs=55.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHH-hCCCCEE-EecCCCCC-------------ccccccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAE-AFSCPIN-YYSRTEKP-------------NLKYKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~-~~G~~V~-~~~~~~~~-------------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      .+|+|+| +|+||+.+++.+. .-++++. ++|++...             ..+.....++++++.++|+|+-..+  |+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            4899999 9999999999987 4577754 66876432             1123345789999999999987764  32


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ..  . +.....++.|.-+|-...|
T Consensus       100 a~--~-~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          100 AS--V-LYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HH--H-HHHHHHHHHTCEEEECCCC
T ss_pred             HH--H-HHHHHHHHcCCCEEEECCC
Confidence            21  1 1122234456666655566

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.05  E-value=0.012  Score=55.07  Aligned_cols=137  Identities=13%  Similarity=0.161  Sum_probs=81.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc--cC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA--LG  222 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~--mk  222 (313)
                      .++.|+|.|.+|+++++.++.+|++|.++|+++.....        +-+..+|-++..-|          .+.+..  +.
T Consensus       200 ~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~~--------~~fp~a~~v~~~~p----------~~~~~~~~~~  261 (362)
T 3on5_A          200 ERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEK--------HFFPDADEIIVDFP----------ADFLRKFLIR  261 (362)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGCG--------GGCTTCSEEEESCH----------HHHHHHSCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccccc--------ccCCCceEEecCCH----------HHHHhhcCCC
Confidence            47999999999999999999999999999987653211        12344565443333          222333  55


Q ss_pred             CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCccc----CCCceEEcc---CCCCCcHHHHHHHHHHH
Q 021388          223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF----GLENVVLMP---HVGSGTVETRKTMADLV  295 (313)
Q Consensus       223 ~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~----~~pnv~lTP---H~a~~t~~~~~~~~~~~  295 (313)
                      +++.+|=+.++.-.|...|.++|+. ...+.++  ..+.-- ...|+    ...+ +-+|   -+++.|++   .++--+
T Consensus       262 ~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~--iGSr~R-~~rl~~~g~~~~r-i~~PIGL~Iga~tP~---EIAvSI  333 (362)
T 3on5_A          262 PDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGI--LGSKER-TRRLLQNRKPPDH-LYSPVGLSIDAQGPE---EIAISI  333 (362)
T ss_dssp             TTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEE--SSCHHH-HHHHHTSCCCCTT-EESSCSCCSCCCSHH---HHHHHH
T ss_pred             CCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEE--eCCHHH-HHHHHhcCCcHhh-eECCCCCCCCCCCHH---HHHHHH
Confidence            6777777778877888888777766 3433332  100000 00000    0112 4455   46777874   455555


Q ss_pred             HHHHHHHHcCCC
Q 021388          296 LGNLEAHFLNKP  307 (313)
Q Consensus       296 ~~nl~~~~~g~~  307 (313)
                      +..|.+..+|++
T Consensus       334 ~AEiia~~~~~~  345 (362)
T 3on5_A          334 VAQLIQLIRSRK  345 (362)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHhCCC
Confidence            666666666653

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.04  E-value=0.024  Score=51.85  Aligned_cols=91  Identities=11%  Similarity=0.149  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhC-CCCEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAF-SCPINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+.|.+|+++|=   |++.++++..+..+ |++|.+..|..-...          |.  ....+++|.++++|+|..-.-
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            378999999998   59999999999999 999998887432111          22  234689999999999987643


Q ss_pred             CCh----hh------hcccCHHHHhccCCCcEEEEcC
Q 021388          205 LTE----ET------RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       205 ~~~----~t------~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      ..+    ..      ..-++++.++.+|++++|.-+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            211    11      2345778888888888887775

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.02  E-value=0.0049  Score=55.43  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.|+++.|+| .|.+|+.+++.|...|++|.+.+|+.+
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            36789999999 999999999999999999999998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.02  E-value=0.022  Score=52.74  Aligned_cols=63  Identities=17%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ....||.++-+=|-+.|-          ..|....   ...+++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus         4 p~~~~~~~~~lnl~lm~w----------Rll~~~g---~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            4 PLKIADQSVDLNLKLMKW----------RILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------HTCTTCC---HHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHH----------hhcchhh---HHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            345677776665555431          1232111   135899999999999999999999999998 47777753

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.01  E-value=0.0062  Score=56.35  Aligned_cols=92  Identities=17%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc--------cccc----c-C---CCHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN--------LKYK----Y-Y---PSVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------~~~~----~-~---~~l~e~~~~aDvV~~~lp~  205 (313)
                      .+++|.|.| .|.+|+.+++.|...|++|.+.+|+....        .+..    . .   .++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            367899998 59999999999999999999998876532        0111    1 1   2356678899999876643


Q ss_pred             ChhhhcccCHHHHhccCC-C--cEEEEcCCCc
Q 021388          206 TEETRHIINREVIDALGP-K--GVLINIGRGP  234 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~-g--a~lIn~~rg~  234 (313)
                      .....+......+..++. |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111222444444432 3  4788887754

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.00  E-value=0.015  Score=55.92  Aligned_cols=110  Identities=10%  Similarity=0.049  Sum_probs=70.9

Q ss_pred             CCEEEEEcCChH-HHHHHHHHHh----C-CCCEEEecCCC--CCcc-------------c----cccCCCHHHHhhcCCE
Q 021388          144 GKTVGIIGLGRI-GMAVAKRAEA----F-SCPINYYSRTE--KPNL-------------K----YKYYPSVVELASNCHI  198 (313)
Q Consensus       144 g~~igiiG~G~i-G~~iA~~l~~----~-G~~V~~~~~~~--~~~~-------------~----~~~~~~l~e~~~~aDv  198 (313)
                      .++|+|||.|.. |.+++..|..    + +.+|..||+.+  +...             +    .....++.+.++.||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            358999999999 8887766654    2 55799999987  4211             0    1123577889999999


Q ss_pred             EEEecCCChh---hh--------c--------------------ccC--HHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388          199 LVVACPLTEE---TR--------H--------------------IIN--REVIDALGPKGVLINIGRGPHVDERELVSAL  245 (313)
Q Consensus       199 V~~~lp~~~~---t~--------~--------------------li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~al  245 (313)
                      |++++|....   ++        +                    ++.  .+.+....|+++++|.+-.--+-+.++.+..
T Consensus        87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~  166 (450)
T 1s6y_A           87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  166 (450)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999985321   11        0                    110  1233445689999999877655556665554


Q ss_pred             HhCCeeEE
Q 021388          246 VEGRLGGA  253 (313)
Q Consensus       246 ~~~~l~ga  253 (313)
                      ...++.|.
T Consensus       167 p~~rViG~  174 (450)
T 1s6y_A          167 KQEKVVGL  174 (450)
T ss_dssp             CCCCEEEC
T ss_pred             CCCCEEEe
Confidence            33355554

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.99  E-value=0.1  Score=49.65  Aligned_cols=104  Identities=15%  Similarity=0.153  Sum_probs=70.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Cccc---------------cc-cCCCHHHH-hhcCCEE
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLK---------------YK-YYPSVVEL-ASNCHIL  199 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~---------------~~-~~~~l~e~-~~~aDvV  199 (313)
                      .++.|+++.|.|+|++|+.+|+.|...|++|+ +.|.+..  .+.|               .. +..+-+++ -..||++
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVl  293 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVL  293 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEE
T ss_pred             CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEE
Confidence            46899999999999999999999999999988 5555211  0000               00 00111232 3479998


Q ss_pred             EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +-|.     +.+.++.+....++ -.+++..+.+.+. .++ .+.|.+..+.
T Consensus       294 iP~A-----~~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          294 VLAA-----REGALDGDRARQVQ-AQAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             EECS-----CTTCBCHHHHTTCC-CSEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             Eecc-----cccccccchHhhCC-ceEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence            8775     34567888888884 4688899988864 444 4667777666

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.96  E-value=0.024  Score=54.66  Aligned_cols=90  Identities=11%  Similarity=0.145  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcCCh----------HHHHHHHHHHhCCCCEEEecCCCCCcc------------------ccccCCCHHHHh
Q 021388          142 FTGKTVGIIGLGR----------IGMAVAKRAEAFSCPINYYSRTEKPNL------------------KYKYYPSVVELA  193 (313)
Q Consensus       142 l~g~~igiiG~G~----------iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------~~~~~~~l~e~~  193 (313)
                      +.|++|+|+|+.-          -...+++.|...|++|.+|||......                  +.....+..+.+
T Consensus       327 ~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (467)
T 2q3e_A          327 VTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEAC  406 (467)
T ss_dssp             CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHH
T ss_pred             cCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHH
Confidence            6799999999974          788999999999999999999753211                  122235778889


Q ss_pred             hcCCEEEEecCCChhhhcccCH-HHHhccCCCcEEEEcCCCc
Q 021388          194 SNCHILVVACPLTEETRHIINR-EVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~-~~l~~mk~ga~lIn~~rg~  234 (313)
                      +.+|+|++++...+ -+. ++- .+...|+...+++|+ |+-
T Consensus       407 ~~ad~~vi~t~~~~-f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          407 DGAHAVVICTEWDM-FKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             TTCSEEEECSCCGG-GGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             hCCcEEEEecCChh-hhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            99999999987542 222 343 344567766668886 553

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.94  E-value=0.035  Score=51.80  Aligned_cols=146  Identities=14%  Similarity=0.135  Sum_probs=92.7

Q ss_pred             HHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCCh---HHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC
Q 021388           59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLT---DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD  135 (313)
Q Consensus        59 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~---~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~  135 (313)
                      ..+|.++-  -.|...+.+-..+ ...+.-.+|+|.|.-+...   .+.|+.     +.+..++                
T Consensus       120 arvLs~~~--D~IviR~~~~~~~-~~lA~~s~vPVINa~~~~~HPtQaLaDl-----~Ti~E~~----------------  175 (365)
T 4amu_A          120 AKVLGRFY--DGIEFRGFAQSDV-DALVKYSGVPVWNGLTDDEHPTQIIADF-----MTMKEKF----------------  175 (365)
T ss_dssp             HHHHHHHC--SEEEEECSCHHHH-HHHHHHHCSCEEEEECSSCCHHHHHHHH-----HHHHHHH----------------
T ss_pred             HHHHHhhC--cEEEEecCChhHH-HHHHHhCCCCEEeCCCCCCCcHHHHHHH-----HHHHHHh----------------
Confidence            34555553  3455444332222 1223446899999755432   334443     3332211                


Q ss_pred             cccccccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--c--------------c--cccCCCHHHHhhc
Q 021388          136 YKLTTKFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--L--------------K--YKYYPSVVELASN  195 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--~--------------~--~~~~~~l~e~~~~  195 (313)
                         | .+.|++|+++|=|  ++..+++..+..+|++|.+..|..-..  .              +  .....++++.++.
T Consensus       176 ---G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~  251 (365)
T 4amu_A          176 ---G-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQD  251 (365)
T ss_dssp             ---S-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTT
T ss_pred             ---C-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcC
Confidence               1 2889999999988  789999999999999999887743221  1              1  2235689999999


Q ss_pred             CCEEEEecC--CCh--h---------hhcccCHHHHhccCCCcEEEEcCC
Q 021388          196 CHILVVACP--LTE--E---------TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       196 aDvV~~~lp--~~~--~---------t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +|+|..-+-  ...  .         ...-++.+.++.+|++++|.-+.-
T Consensus       252 aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          252 ADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             CSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             CCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence            999987431  111  1         123468889999999999988763

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.94  E-value=0.0065  Score=56.43  Aligned_cols=63  Identities=17%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------cccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +.+++|+|||. |.+|..+|..+...|.  +|..+|...++..+              .....+..+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999998 9999999999988885  79999986542111              1113567788999999999863

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.93  E-value=0.024  Score=52.82  Aligned_cols=83  Identities=12%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCC-CCEEEecCCCCCccc-------cc-------cCCCHHHHhhcCCEEEEecCCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFS-CPINYYSRTEKPNLK-------YK-------YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~-------~~-------~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ...+|||+| .|.+|+.+++.|.... +++.+..........       +.       ...+ ++.+..+|+|+.|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999998765 466665433221100       00       0112 44557899999999854


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ..      .+.....+.|+.+|+.+-
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSS
T ss_pred             hH------HHHHHHHhCCCEEEECCc
Confidence            32      223333367899999885

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.92  E-value=0.042  Score=50.60  Aligned_cols=91  Identities=10%  Similarity=0.170  Sum_probs=67.3

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCC--c----------------cc--cccCCCHHHHhhcCCE
Q 021388          141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKP--N----------------LK--YKYYPSVVELASNCHI  198 (313)
Q Consensus       141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~--~----------------~~--~~~~~~l~e~~~~aDv  198 (313)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-.  .                .+  .....++++.++++|+
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            5889999999986  89999999999999999988775422  1                12  2235689999999999


Q ss_pred             EEEec----CCCh-h--------hhcccCHHHHhccCCCcEEEEcC
Q 021388          199 LVVAC----PLTE-E--------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       199 V~~~l----p~~~-~--------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      |..-+    ...+ .        ...-++.+.++.+|++++|.-+.
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            98632    2011 0        12346888999999999988876

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.90  E-value=0.022  Score=52.97  Aligned_cols=87  Identities=15%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCC------CCEEEec-CC-CCCcc--------c---ccc-CCCHHHHhhcCCEEEEec
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFS------CPINYYS-RT-EKPNL--------K---YKY-YPSVVELASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G------~~V~~~~-~~-~~~~~--------~---~~~-~~~l~e~~~~aDvV~~~l  203 (313)
                      ++|+|+| .|.+|+.+.+.|...+      .++..+. ++ ..+..        +   ... ..+. +.+..+|+|++|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            6899999 9999999999998776      3666553 22 21111        0   000 1122 3356899999999


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCCCccccH
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                      |...      ..+..+.++.|..+|+.|..--.+.
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~  117 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLTD  117 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCSC
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCCc
Confidence            8653      3445455566899999886544433

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.88  E-value=0.011  Score=56.36  Aligned_cols=61  Identities=18%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-------cccCC---CHHHHhhcCCEEEE
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-------YKYYP---SVVELASNCHILVV  201 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-------~~~~~---~l~e~~~~aDvV~~  201 (313)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|.++|+++.....       .....   .+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999999999977653211       01112   34556778998874

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.88  E-value=0.015  Score=50.08  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=49.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCC--CEEEecCCCCCcc-----cc-------ccCCCHHHHhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSC--PINYYSRTEKPNL-----KY-------KYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~-----~~-------~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      +.++++.|.| .|.||+.+++.|...|+  +|.+.+|++....     ..       ....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5678999998 69999999999999999  9999998765321     11       11234666788899998887654

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.88  E-value=0.0085  Score=57.50  Aligned_cols=106  Identities=12%  Similarity=0.073  Sum_probs=67.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCE-EEecCCCCCcc-------c----------------------cccCCCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPI-NYYSRTEKPNL-------K----------------------YKYYPSVVELA  193 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V-~~~~~~~~~~~-------~----------------------~~~~~~l~e~~  193 (313)
                      .+|||||+|.||+.+++.+... |+++ .++|++++...       +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4799999999999999888754 6665 46787765311       1                      12357899998


Q ss_pred             h--cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC-ccccHHHHHHHHHhCCeeEEE
Q 021388          194 S--NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG-PHVDERELVSALVEGRLGGAG  254 (313)
Q Consensus       194 ~--~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg-~~vd~~al~~al~~~~l~ga~  254 (313)
                      +  +.|+|+.++|....-.    +-.+..|+.|.-++...-. ...+.+.|.++.++.++....
T Consensus       104 ~d~dIDaVviaTp~p~~H~----e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~  163 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGA----ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSL  163 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHH----HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             cCCCCCEEEEcCCChHHHH----HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeee
Confidence            7  4899999998532111    2244556667666532211 123446777777776665333

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.87  E-value=0.0053  Score=53.07  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             CEEEEEcCChHHHHHHHH--HHhCCCCEE-EecCCCCCcc----cc--ccCCCHHHHhh-cCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKR--AEAFSCPIN-YYSRTEKPNL----KY--KYYPSVVELAS-NCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~--l~~~G~~V~-~~~~~~~~~~----~~--~~~~~l~e~~~-~aDvV~~~lp~  205 (313)
                      ++++|||.|.+|+.+++.  ... |+++. ++|.+++...    +.  ....+++++++ +.|+|++++|.
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps  150 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR  150 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence            579999999999999985  234 77755 5676655321    11  12567888876 58999999994

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.86  E-value=0.0063  Score=57.13  Aligned_cols=62  Identities=13%  Similarity=0.096  Sum_probs=46.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhC--CCCEE-EecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAF--SCPIN-YYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ..+|||||+| +|+.-++.++..  ++++. ++|++.+..      .+...+.++++++.+.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            3589999999 799888777665  56755 678877532      23445689999999999999999854

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.86  E-value=0.016  Score=52.41  Aligned_cols=64  Identities=11%  Similarity=0.012  Sum_probs=47.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc--------cccCCCHHHHhhcCCEE
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK--------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~--------~~~~~~l~e~~~~aDvV  199 (313)
                      .+.|++|.|.|. |.||+.+++.|...|++|.+.+|+....            ..        .....+++++++..|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            478899999997 9999999999999999999998864310            01        11123455677789998


Q ss_pred             EEecC
Q 021388          200 VVACP  204 (313)
Q Consensus       200 ~~~lp  204 (313)
                      +.+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            77664

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.85  E-value=0.035  Score=51.63  Aligned_cols=163  Identities=11%  Similarity=0.063  Sum_probs=101.2

Q ss_pred             CceEEEEeCC-CCC--------CHHHHhhCCCccEEEEcCcCCCcCChhh-hhhcCcEEEcCCCCChHHHHHHHHHHHHH
Q 021388           45 NIRAVVGNAT-AGA--------DAELIDALPKLEIVSSFSVGLDKVDMVK-CKEKGVRVTNTPDVLTDDVADLAIGLMLA  114 (313)
Q Consensus        45 ~~~~i~~~~~-~~~--------~~~~l~~~~~Lk~i~~~~~G~d~id~~~-~~~~gI~v~n~~~~~~~~vAE~al~~~L~  114 (313)
                      +.+++..... ..+        +..+|.++.  -.|...+.+-..  +.. +.-.+|+|.|.-+...-++  .+|+=++.
T Consensus        93 Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~--D~IviR~~~~~~--~~~lA~~s~vPVINa~~~~~HPt--QaLaDl~T  166 (359)
T 2w37_A           93 GAHPEYLGQNDIQLGKKESTSDTAKVLGSMF--DGIEFRGFKQSD--AEILARDSGVPVWNGLTDEWHPT--QMLADFMT  166 (359)
T ss_dssp             TCEEEEECTTTCCTTTSSCHHHHHHHHHHHC--SEEEEESSCHHH--HHHHHHHSSSCEEEEECSSCCHH--HHHHHHHH
T ss_pred             CCeEEEeCCccccCCCCcCHHHHHHHHHHhc--CEEEEecCChHH--HHHHHHhCCCCEEcCCCCCCCcc--HHHHHHHH
Confidence            6777776421 112        234566653  355555433222  333 3345899999765433222  12222233


Q ss_pred             HHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCcc-----------
Q 021388          115 VLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPNL-----------  181 (313)
Q Consensus       115 ~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----------  181 (313)
                      +.+++                   | .+.|.+|+++|=|  ++.++++..+..+|++|.+..|..-...           
T Consensus       167 i~E~~-------------------g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a  226 (359)
T 2w37_A          167 VKENF-------------------G-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFA  226 (359)
T ss_dssp             HHHHH-------------------S-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHH
T ss_pred             HHHHh-------------------C-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHH
Confidence            33221                   1 3789999999986  9999999999999999998887432111           


Q ss_pred             ---c--cccCCCHHHHhhcCCEEEEecCC---C--hh------hhcccCHHHHhccC---CCcEEEEcCCC
Q 021388          182 ---K--YKYYPSVVELASNCHILVVACPL---T--EE------TRHIINREVIDALG---PKGVLINIGRG  233 (313)
Q Consensus       182 ---~--~~~~~~l~e~~~~aDvV~~~lp~---~--~~------t~~li~~~~l~~mk---~ga~lIn~~rg  233 (313)
                         |  .....++++.++.+|+|..-.-.   .  ..      ...-++.+.++.+|   ++++|.-+.-.
T Consensus       227 ~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP~  297 (359)
T 2w37_A          227 EKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPA  297 (359)
T ss_dssp             HHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCC
T ss_pred             HHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCCC
Confidence               1  22357899999999999885431   1  00      12456888888888   88888887643

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.84  E-value=0.027  Score=52.20  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCC-CCEEEecCCCCCc--cc-----c-----ccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFS-CPINYYSRTEKPN--LK-----Y-----KYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~--~~-----~-----~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .+|||+| .|.+|+.+.+.|.... +++.+..+.....  ..     +     ....++++ +..+|+|+.|+|.....+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            5899999 7999999999998664 3665544322211  00     0     01223444 478999999999654322


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                       .. .   ..++.|..+|+.+-
T Consensus        84 -~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           84 -EF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             -TH-H---HHHTTCSEEEECSS
T ss_pred             -HH-H---HHHHCCCEEEEcCc
Confidence             21 2   23467888999875

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.81  E-value=0.015  Score=54.31  Aligned_cols=63  Identities=10%  Similarity=0.103  Sum_probs=45.2

Q ss_pred             CEEEEEc-CChHHHH-HH----HHHHhCC-CCE----------EEecCCCCCcc------cc-ccCCCHHHHhhc--CCE
Q 021388          145 KTVGIIG-LGRIGMA-VA----KRAEAFS-CPI----------NYYSRTEKPNL------KY-KYYPSVVELASN--CHI  198 (313)
Q Consensus       145 ~~igiiG-~G~iG~~-iA----~~l~~~G-~~V----------~~~~~~~~~~~------~~-~~~~~l~e~~~~--aDv  198 (313)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++|++++...      +. ..+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    6666543 222          38888776422      23 246789999876  899


Q ss_pred             EEEecCCCh
Q 021388          199 LVVACPLTE  207 (313)
Q Consensus       199 V~~~lp~~~  207 (313)
                      |++++|...
T Consensus        87 V~i~tp~~~   95 (383)
T 3oqb_A           87 FFDAATTQA   95 (383)
T ss_dssp             EEECSCSSS
T ss_pred             EEECCCchH
Confidence            999999643

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.80  E-value=0.008  Score=54.95  Aligned_cols=88  Identities=17%  Similarity=0.196  Sum_probs=56.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCccc--------------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPNLK--------------YKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~~--------------~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++|+|||.|.+|.+++..+...+  -++..+|+..++..+              .....+..+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            48999999999999999998766  369999987542211              00111235678999999998864321


Q ss_pred             ---h--------hcccC--HHHHhccCCCcEEEEcCC
Q 021388          209 ---T--------RHIIN--REVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 ---t--------~~li~--~~~l~~mk~ga~lIn~~r  232 (313)
                         +        ..++.  .+.+....|++++++++.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence               0        11110  112223378999999843

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.80  E-value=0.029  Score=51.23  Aligned_cols=94  Identities=17%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCC--CCEEEecCCCCCcc------c-----ccc---CCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFS--CPINYYSRTEKPNL------K-----YKY---YPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~------~-----~~~---~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      ++|+|||. |.+|..++..|...|  .+|..+|+.+....      .     ...   ..++++.++.||+|+++.....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            47999998 999999999999777  57999998762100      0     111   1357788999999999874322


Q ss_pred             h---hh-ccc--C----HH---HHhccCCCcEEEEcCCCccccHHH
Q 021388          208 E---TR-HII--N----RE---VIDALGPKGVLINIGRGPHVDERE  240 (313)
Q Consensus       208 ~---t~-~li--~----~~---~l~~mk~ga~lIn~~rg~~vd~~a  240 (313)
                      .   ++ .++  |    .+   .+....|++++|++  .+.+|.-.
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            1   11 110  1    11   22233588999997  45566554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.79  E-value=0.014  Score=53.77  Aligned_cols=87  Identities=22%  Similarity=0.362  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc-CCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY-YPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~-~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++..     ++.. ..+.+++.+..|+|+-++....     .-..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence            578999999999999999999999999999988765422     2111 1223333336888888776432     1245


Q ss_pred             HHhccCCCcEEEEcCCCc
Q 021388          217 VIDALGPKGVLINIGRGP  234 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~  234 (313)
                      .+..++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            677788888888887543

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.79  E-value=0.0047  Score=58.37  Aligned_cols=64  Identities=19%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC---------CCCEE-EecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF---------SCPIN-YYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~---------G~~V~-~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~  205 (313)
                      .+|||||+|.||+..++.++..         +.+|. ++|++++...      +. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988888754         34554 6788765321      22 34678999986  57999999995


Q ss_pred             Chh
Q 021388          206 TEE  208 (313)
Q Consensus       206 ~~~  208 (313)
                      ..+
T Consensus       107 ~~H  109 (412)
T 4gqa_A          107 HLH  109 (412)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            443

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.78  E-value=0.013  Score=53.39  Aligned_cols=67  Identities=9%  Similarity=0.067  Sum_probs=46.0

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-c-----cccCCCHHHHhhcCCEEEEecCC
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-K-----YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-~-----~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .....+++|.|.|. |.||+.+++.|...|++|.+.+|+..... .     .....++.+++..+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            34688999999997 99999999999999999999998765311 0     11123456778899999876643

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.78  E-value=0.031  Score=49.80  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            468999996 9999999999999999999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.77  E-value=0.032  Score=53.59  Aligned_cols=90  Identities=17%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCc----cc--cccCCCHHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPN----LK--YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~--~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+.|++|+|+|+-          .-...+++.|...|++|.+|||.....    .+  .....++++.++.+|+|++++.
T Consensus       315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~  394 (450)
T 3gg2_A          315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTE  394 (450)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSC
T ss_pred             cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccC
Confidence            4789999999985          357889999999999999999976421    11  2345678899999999999987


Q ss_pred             CChhhhcccCHH-HHhccCCCcEEEEcCCCc
Q 021388          205 LTEETRHIINRE-VIDALGPKGVLINIGRGP  234 (313)
Q Consensus       205 ~~~~t~~li~~~-~l~~mk~ga~lIn~~rg~  234 (313)
                      ..+ -+. ++-+ +.+.|+ +.+++|+ |+-
T Consensus       395 ~~~-f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          395 WKE-FRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             CGG-GSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             CHH-Hhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            543 222 3433 444565 6788995 543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.76  E-value=0.017  Score=52.36  Aligned_cols=67  Identities=9%  Similarity=-0.053  Sum_probs=49.3

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-------ccc----cC---CCHHHHhh--cCCEEEE
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-------KYK----YY---PSVVELAS--NCHILVV  201 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------~~~----~~---~~l~e~~~--~aDvV~~  201 (313)
                      ...+.|++|.|.|. |.||+.+++.|...|++|.+.+|+.....       ...    ..   .+++++++  ..|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            35689999999987 99999999999999999999998543211       111    01   23556677  8999887


Q ss_pred             ecCC
Q 021388          202 ACPL  205 (313)
Q Consensus       202 ~lp~  205 (313)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7653

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.75  E-value=0.0095  Score=53.50  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHH-hCCCCEE-EecCCCCC----cc---------ccccCCCHHHHhhcCCEEEEec
Q 021388          145 KTVGIIGL-GRIGMAVAKRAE-AFSCPIN-YYSRTEKP----NL---------KYKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~-~~G~~V~-~~~~~~~~----~~---------~~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+|+|+|+ |.||+.+++.+. .-|+++. ++|+....    ..         +.....++++++..+|+|+-+.
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            58999998 999999999876 4577765 77776532    11         1122456778888999999454

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.74  E-value=0.15  Score=48.82  Aligned_cols=156  Identities=14%  Similarity=0.152  Sum_probs=106.0

Q ss_pred             CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388           90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-  168 (313)
                      .|++.|.. .  .-+|=-+++-+++.+|-.                   +..+...+|.|.|.|.-|-.+|+.+...|. 
T Consensus       187 ~ipvFnDD-~--qGTA~V~lAgllnAlki~-------------------gk~l~d~riV~~GAGaAGigia~ll~~~G~~  244 (487)
T 3nv9_A          187 DIPVWHDD-Q--QGTASVTLAGLLNALKLV-------------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGAD  244 (487)
T ss_dssp             SSCEEETT-T--HHHHHHHHHHHHHHHHHH-------------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCCccccc-c--chHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence            79999986 3  346667888888887733                   456888999999999999999999999999 


Q ss_pred             --CEEEecCCC----CCc-c-----c------c--c---cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388          169 --PINYYSRTE----KPN-L-----K------Y--K---YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG  225 (313)
Q Consensus       169 --~V~~~~~~~----~~~-~-----~------~--~---~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga  225 (313)
                        +++.+|+..    ... .     .      +  .   ...+|.|+++.+|+++-.- ..  ..++++++.++.|.+.+
T Consensus       245 ~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~P  321 (487)
T 3nv9_A          245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWIKSMGEKP  321 (487)
T ss_dssp             GGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHHHTSCSSC
T ss_pred             cccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHHHhhcCCC
Confidence              799998742    110 0     0      0  0   2347999999999775432 11  14689999999999999


Q ss_pred             EEEEcCCCcc-ccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCC
Q 021388          226 VLINIGRGPH-VDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVG  281 (313)
Q Consensus       226 ~lIn~~rg~~-vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a  281 (313)
                      ++.=.|.... +..++   +.+.|+..-|    ....+.|+    +..|+++-|-++
T Consensus       322 IIFaLSNPtpEi~pe~---A~~~G~aIvA----TGrsd~Pn----Q~NN~liFPGI~  367 (487)
T 3nv9_A          322 IVFCCANPVPEIYPYE---AKEAGAYIVA----TGRGDFPN----QVNNSVGFPGIL  367 (487)
T ss_dssp             EEEECCSSSCSSCHHH---HHHTTCSEEE----ESCTTSSS----BCCGGGTHHHHH
T ss_pred             EEEECCCCCccCCHHH---HHHhCCEEEE----ECCCCCcc----cCcceeEcchhh
Confidence            9998887654 22222   2335653322    12222222    566777666543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.72  E-value=0.038  Score=49.54  Aligned_cols=39  Identities=31%  Similarity=0.237  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .++.||++.|.|. |.||+.+|+.|...|++|.+.+++..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4589999999976 78999999999999999999888754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.71  E-value=0.0048  Score=57.33  Aligned_cols=88  Identities=22%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC---CCcc-----ccccC-C-CHHHHh----hcCCEEEEecCCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE---KPNL-----KYKYY-P-SVVELA----SNCHILVVACPLT  206 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~---~~~~-----~~~~~-~-~l~e~~----~~aDvV~~~lp~~  206 (313)
                      .+.|++|.|+|.|.+|..+++.++.+|++|++.+++.   ++..     ++... . ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            4679999999999999999999999999999999876   3211     11111 0 111111    2478888877643


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ...   + +..+..|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            221   0 445677788888888764

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.69  E-value=0.27  Score=46.64  Aligned_cols=105  Identities=16%  Similarity=0.132  Sum_probs=71.0

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHh-CCCCEE-EecCCCC--Cccc------------------c--ccCCCHHHHh-
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEA-FSCPIN-YYSRTEK--PNLK------------------Y--KYYPSVVELA-  193 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~-~G~~V~-~~~~~~~--~~~~------------------~--~~~~~l~e~~-  193 (313)
                      +.++.|+++.|.|+|++|+..|+.|.. .|++|+ +.|.+..  .+.|                  +  ....+.++++ 
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            346899999999999999999999998 999987 4454211  0000                  0  0011345554 


Q ss_pred             hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ..||+++-|..     .+.++.+....+ ...+++-.+.+.+. .++ .+.|.+..+.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l-~ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERI-KAKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTC-CCSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHc-CCeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            47999987764     345778888888 36677777777764 444 4556677665

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.69  E-value=0.039  Score=50.64  Aligned_cols=149  Identities=14%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             HHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCccc
Q 021388           59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKL  138 (313)
Q Consensus        59 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~  138 (313)
                      ..+++++.  -.|.....+-..+. ..+...+|+|.|..+...-++-  +|+=++.+.+++                   
T Consensus        95 arvls~~~--D~iviR~~~~~~~~-~lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~-------------------  150 (321)
T 1oth_A           95 ARVLSSMA--DAVLARVYKQSDLD-TLAKEASIPIINGLSDLYHPIQ--ILADYLTLQEHY-------------------  150 (321)
T ss_dssp             HHHHHHHC--SEEEEECSCHHHHH-HHHHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH-------------------
T ss_pred             HHHHHHhC--CEEEEeCCChhHHH-HHHHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHHh-------------------
Confidence            34555653  34444443322221 2233457999998664433321  222233333321                   


Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCC-cc-------------c--cccCCCHHHHhhcCCEEEE
Q 021388          139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKP-NL-------------K--YKYYPSVVELASNCHILVV  201 (313)
Q Consensus       139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~-~~-------------~--~~~~~~l~e~~~~aDvV~~  201 (313)
                      | .+.|.+|+++|=| ++.++.+..+..+|++|.+..|..-. ..             |  .....++++.++++|+|..
T Consensus       151 g-~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~  229 (321)
T 1oth_A          151 S-SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLIT  229 (321)
T ss_dssp             S-CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEE
T ss_pred             C-CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEE
Confidence            1 3889999999985 48888888888999999988875432 11             1  2335789999999999988


Q ss_pred             ecCCC---h-h--------hhcccCHHHHhccCCCcEEEEcCC
Q 021388          202 ACPLT---E-E--------TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       202 ~lp~~---~-~--------t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      -+-..   + +        ...-++++.++.+|++++|.-+.-
T Consensus       230 d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          230 DTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             CCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             eccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence            44211   1 1        113468888888888888888763

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.68  E-value=0.018  Score=55.48  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=73.7

Q ss_pred             cCCCEEEEEcCC----hHHHHHHHHHHhCC-CCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          142 FTGKTVGIIGLG----RIGMAVAKRAEAFS-CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       142 l~g~~igiiG~G----~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      +.-++|+|||.+    ++|..+.+.++..| ..|+..++......+...+.++.++....|++++++|. +....++ ++
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v-~e   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTL-IQ   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH-HHHHHHH-HH
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCH-HHHHHHH-HH
Confidence            556899999998    89999999999885 67888888765555666677888888889999999993 2333333 33


Q ss_pred             HHhccCCCcEEEEcC-CCcccc-----HHHHHHHHHhCCee
Q 021388          217 VIDALGPKGVLINIG-RGPHVD-----ERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~-rg~~vd-----~~al~~al~~~~l~  251 (313)
                      ..+ ..-..+++..+ -.+.-+     ++++.+.+++..++
T Consensus        84 ~~~-~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           84 CGE-KGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHH-HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-cCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            333 23333443332 222223     67888888887776

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.67  E-value=0.013  Score=53.82  Aligned_cols=93  Identities=19%  Similarity=0.360  Sum_probs=59.5

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCC--CCEEEecCCCCCc-------ccc----cc---CCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFS--CPINYYSRTEKPN-------LKY----KY---YPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~-------~~~----~~---~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+.+...       ...    ..   ..++.+.++.+|+|+++.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            36899999 8999999999998877  6888999765410       000    11   124567899999999998533


Q ss_pred             hhh---hc-c--cC----HHH---HhccCCCcEEEEcCCCccccH
Q 021388          207 EET---RH-I--IN----REV---IDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       207 ~~t---~~-l--i~----~~~---l~~mk~ga~lIn~~rg~~vd~  238 (313)
                      ...   +. +  .|    ++.   +....+.+++++++  ..+|.
T Consensus        88 ~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             CCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            210   00 0  01    112   22335788999874  55555

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.66  E-value=0.042  Score=50.80  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=41.3

Q ss_pred             EEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------cccc-----------------CCCHHHHhhcCCEEE
Q 021388          146 TVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------KYKY-----------------YPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~~~~-----------------~~~l~e~~~~aDvV~  200 (313)
                      +|||+|+|.||+.+++.+... ++++. +.|++.....      +...                 ..++++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999999864 45654 4565533110      1111                 114446667899999


Q ss_pred             EecCCC
Q 021388          201 VACPLT  206 (313)
Q Consensus       201 ~~lp~~  206 (313)
                      .|+|..
T Consensus        83 ~aTp~~   88 (340)
T 1b7g_O           83 DTTPNG   88 (340)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999854

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.63  E-value=0.03  Score=49.91  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            568999996 9999999999999999999999875

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.61  E-value=0.093  Score=47.81  Aligned_cols=98  Identities=15%  Similarity=0.112  Sum_probs=70.6

Q ss_pred             ccC-CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------ccccCCCHHHHhhcCCEEEEe
Q 021388          141 KFT-GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KYKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~-g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+. |.+|+++|= +++.++++..+..+|++|.+..|..-...                ......++++.++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            377 999999996 57889999999999999998887542111                122356899999999999876


Q ss_pred             cCC--Ch--h--------hhcccCHHHHhccCCCcEEEEcC---CCccccH
Q 021388          203 CPL--TE--E--------TRHIINREVIDALGPKGVLINIG---RGPHVDE  238 (313)
Q Consensus       203 lp~--~~--~--------t~~li~~~~l~~mk~ga~lIn~~---rg~~vd~  238 (313)
                      .-.  ..  +        ...-++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~  272 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSE  272 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCH
Confidence            511  10  0        12346888999999999998887   5544443

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.60  E-value=0.0097  Score=55.35  Aligned_cols=64  Identities=8%  Similarity=0.102  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCChHHH-HHHHHHHhCCCCE-EEecCCCCCcc------c-cccCCCHHHHhhc--CCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGM-AVAKRAEAFSCPI-NYYSRTEKPNL------K-YKYYPSVVELASN--CHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~-~iA~~l~~~G~~V-~~~~~~~~~~~------~-~~~~~~l~e~~~~--aDvV~~~lp~~  206 (313)
                      .-.+|||||+|.+|. .++..++.-|+++ .++|++++...      + ...+.++++++++  .|+|++++|..
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   99 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS   99 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            346899999999995 5777777778885 47788765321      2 2346799999975  89999999843

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.58  E-value=0.0074  Score=57.96  Aligned_cols=104  Identities=14%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh----------CCCCEE-EecCCCCCcc----ccccCCCHHHHhh--cCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA----------FSCPIN-YYSRTEKPNL----KYKYYPSVVELAS--NCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~----------~G~~V~-~~~~~~~~~~----~~~~~~~l~e~~~--~aDvV~~~lp~~  206 (313)
                      -.+|||||+|.||+.+++.+..          .+.+|. ++|++.....    +...+.++++++.  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3589999999999999887753          345554 5677654322    2334678899986  579999999853


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee
Q 021388          207 EETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG  251 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~  251 (313)
                      .....+    ....|+.|.-++-.--+.. -+.++|.++.++.+..
T Consensus        90 ~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            222212    3455667766665433222 2346788888777665

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.58  E-value=0.15  Score=48.47  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--------C--------cccc------------ccCCCH
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--------P--------NLKY------------KYYPSV  189 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--------~--------~~~~------------~~~~~l  189 (313)
                      +.++.|+++.|.|+|++|+.+++.|...|++|+ +.|.+..        .        ..+.            ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            346899999999999999999999999999987 4444210        0        0011            111022


Q ss_pred             HHHh-hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          190 VELA-SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       190 ~e~~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ++++ ..||+++-|.     +.+.|+.+..+.++ -.+++-.+.+.+. .++ .+.|.+..+.
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            3443 4799887766     34456777777774 4677777777754 444 4677777776

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.58  E-value=0.028  Score=55.31  Aligned_cols=78  Identities=21%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc--------ccCCCHHHH-hhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY--------KYYPSVVEL-ASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~--------~~~~~l~e~-~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      +++.|+|+|.+|+.+|+.|...|.+|.+.|.+++.....        .....|+++ ++++|.++.+++.++  .+++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~--~ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS--TNIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH--HHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch--HHHHHH
Confidence            789999999999999999999999999999887643211        112234443 789999999998654  334445


Q ss_pred             HHHhccCCC
Q 021388          216 EVIDALGPK  224 (313)
Q Consensus       216 ~~l~~mk~g  224 (313)
                      ...+.+.+.
T Consensus       427 ~~ak~l~~~  435 (565)
T 4gx0_A          427 LACRHLHSH  435 (565)
T ss_dssp             HHHHHHCSS
T ss_pred             HHHHHHCCC
Confidence            566666666

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.57  E-value=0.012  Score=54.10  Aligned_cols=85  Identities=19%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc-----ccc-----cCCCHHHHhh------cCCEEEEecCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL-----KYK-----YYPSVVELAS------NCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-----~~~-----~~~~l~e~~~------~aDvV~~~lp~  205 (313)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.++++++..     ++.     ...++.+.+.      ..|+|+-++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68899999999999999999999999 9999998754311     111     0122322221      36777766653


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .+.     -+..+..++++..+++++.
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEcc
Confidence            211     1345566677777777654

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.52  E-value=0.033  Score=51.17  Aligned_cols=88  Identities=14%  Similarity=0.182  Sum_probs=57.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCC----CCCcc-----------c----cccCCCHHHHhhcCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRT----EKPNL-----------K----YKYYPSVVELASNCH  197 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~----~~~~~-----------~----~~~~~~l~e~~~~aD  197 (313)
                      ++|+|+|. |.+|..++..|...|+       +|..+|+.    .+...           .    .....++.+.++.||
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD   85 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD   85 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence            58999997 9999999999988775       78899987    22110           0    111257788999999


Q ss_pred             EEEEecCCChh---hhc-cc--C----H---HHHhcc-CCCcEEEEcCC
Q 021388          198 ILVVACPLTEE---TRH-II--N----R---EVIDAL-GPKGVLINIGR  232 (313)
Q Consensus       198 vV~~~lp~~~~---t~~-li--~----~---~~l~~m-k~ga~lIn~~r  232 (313)
                      +|+.+......   ++. ++  |    .   +.+... ++.+++|+++.
T Consensus        86 ~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           86 VALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99887642211   110 10  1    1   122333 47889999973

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.51  E-value=0.096  Score=48.61  Aligned_cols=92  Identities=8%  Similarity=0.065  Sum_probs=64.8

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCC-cc-----------------ccccCCCHHHHhhcCCEEE
Q 021388          140 TKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKP-NL-----------------KYKYYPSVVELASNCHILV  200 (313)
Q Consensus       140 ~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~-~~-----------------~~~~~~~l~e~~~~aDvV~  200 (313)
                      ..+.|.+|+++|=+ ++.++++..+..+|++|.+..|..-. ..                 .+....+++|.++++|+|.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy  263 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV  263 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence            45899999999976 57888889999999999988875431 10                 1223568999999999998


Q ss_pred             Eec--CCChh----------hhcccCHHHHhc--cCCCcEEEEcC
Q 021388          201 VAC--PLTEE----------TRHIINREVIDA--LGPKGVLINIG  231 (313)
Q Consensus       201 ~~l--p~~~~----------t~~li~~~~l~~--mk~ga~lIn~~  231 (313)
                      .-.  +...+          ...-++.+.++.  +|++++|.-+.
T Consensus       264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            643  11111          113467778877  78888887765

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.49  E-value=0.047  Score=48.96  Aligned_cols=41  Identities=20%  Similarity=0.364  Sum_probs=37.1

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +...++.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         6 pl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            45567999999999999999999999999999999998754

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.47  E-value=0.11  Score=49.73  Aligned_cols=105  Identities=12%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Ccc-----------------------------ccccC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNL-----------------------------KYKYY  186 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~-----------------------------~~~~~  186 (313)
                      +.++.|+++.|-|+|++|+..|+.|...|++|+ +.|.+..  .+.                             +....
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            346899999999999999999999999999986 5553310  000                             00011


Q ss_pred             CCHHH-HhhcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          187 PSVVE-LASNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       187 ~~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       +-++ +-..||+++-|.     +.+.|+.+....+.  .-.+++-.+.+.+.. ++ .+.|.+..+.
T Consensus       314 -~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~-eA-~~iL~~rGI~  373 (456)
T 3r3j_A          314 -ENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHI-KA-LHKLKQNNII  373 (456)
T ss_dssp             -CSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCT-TH-HHHHHTTTCE
T ss_pred             -CCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence             1122 234578776554     34567777776662  245666667777543 33 3567666665

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.46  E-value=0.01  Score=52.46  Aligned_cols=60  Identities=12%  Similarity=-0.027  Sum_probs=45.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cCCCHHHHhhcCCEEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .++|.|.|.|.+|+.+++.|...|++|.+.+|+.....     +..    ...+++  +..+|+|+.+...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence            37899999999999999999999999999998765321     111    122333  7789999877754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.46  E-value=0.014  Score=54.00  Aligned_cols=88  Identities=22%  Similarity=0.218  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc-----CC-CHHHHh-hcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY-----YP-SVVELA-SNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~-----~~-~l~e~~-~~aDvV~~~lp~~~~t~  210 (313)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++++..     ++..     .. ++.+.+ ...|+|+-+++.++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            478999999999999999999999999999998765421     2211     11 332222 46899988887521  1


Q ss_pred             cccCHHHHhccCCCcEEEEcCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ..+ +..+..++++..++.++..
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecCC
Confidence            112 3456778888888888753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.46  E-value=0.043  Score=50.89  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc----C---CCHHHHhh-----cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY----Y---PSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 799998776532     12211    1   23444332     4798888776


Q ss_pred             CChhhhcccCHHHHhccCCC-cEEEEcCCC
Q 021388          205 LTEETRHIINREVIDALGPK-GVLINIGRG  233 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~g-a~lIn~~rg  233 (313)
                      ..+ +    -+..+..++++ ..+|.++-.
T Consensus       272 ~~~-~----~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          272 NVG-V----MRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECSCC
T ss_pred             CHH-H----HHHHHHHhhcCCcEEEEEcCC
Confidence            322 1    14567788888 888887743

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.44  E-value=0.028  Score=49.71  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhC-CCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAF-SCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|.|.| .|.+|+.+++.|... |++|.+.+|++....     +..       ...++.++++.+|+|+.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            3688998 599999999999987 999999998765322     111       123466788999999877654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.44  E-value=0.025  Score=48.78  Aligned_cols=61  Identities=15%  Similarity=0.064  Sum_probs=43.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcccc-----ccCCCHHHHhh----cCCEEEEecCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-----KYYPSVVELAS----NCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~e~~~----~aDvV~~~lp~  205 (313)
                      |++.|.|. |.||+.+++.|...|++|++.+|+.......     ....+++++++    ..|+|+.+...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            47888876 9999999999999999999999876532111     11123445554    78999877643

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.44  E-value=0.0089  Score=51.67  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             CCEEEEEcCChHHHHHHHHH--HhCCCCEE-EecCCCC-Cc-----cccc--cCCCHHHHhhc--CCEEEEecCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRA--EAFSCPIN-YYSRTEK-PN-----LKYK--YYPSVVELASN--CHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l--~~~G~~V~-~~~~~~~-~~-----~~~~--~~~~l~e~~~~--aDvV~~~lp~  205 (313)
                      .++++|+|.|++|+.+++.+  ...|+++. ++|.++. ..     .+..  ..+++++++++  .|.+++++|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs  158 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS  158 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence            35899999999999999973  45678865 5676665 21     1222  23567787764  8999999984

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.43  E-value=0.039  Score=51.22  Aligned_cols=85  Identities=16%  Similarity=0.211  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc----C---CCHHHHhh-----cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY----Y---PSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            57899999999999999999999999 799998776532     12210    1   12333322     3688877765


Q ss_pred             CChhhhcccCHHHHhccCCC-cEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPK-GVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~g-a~lIn~~r  232 (313)
                      ..+ +   + +..+..++++ ..++.++-
T Consensus       271 ~~~-~---~-~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RLD-T---M-VTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CHH-H---H-HHHHHHBCTTTCEEEECSC
T ss_pred             CHH-H---H-HHHHHHhhcCCcEEEEecc
Confidence            321 1   1 4456777887 77777763

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.43  E-value=0.0058  Score=56.68  Aligned_cols=64  Identities=14%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--------CCCE-EEecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--------SCPI-NYYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--------G~~V-~~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~  206 (313)
                      -+|||||+|.||+.-++.++..        +++| .++|++++...      +. ..+.+++++++  +.|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4799999999999888777643        2354 46788765321      22 34678999986  479999999954


Q ss_pred             hh
Q 021388          207 EE  208 (313)
Q Consensus       207 ~~  208 (313)
                      -+
T Consensus        87 ~H   88 (390)
T 4h3v_A           87 SH   88 (390)
T ss_dssp             GH
T ss_pred             HH
Confidence            43

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.43  E-value=0.045  Score=50.92  Aligned_cols=85  Identities=20%  Similarity=0.255  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc-------CCCHHHHhh-----cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY-------YPSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~-------~~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..       ..++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            57899999999999999999999999 799999876532     12211       123333222     3788877765


Q ss_pred             CChhhhcccCHHHHhccCCC-cEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPK-GVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~g-a~lIn~~r  232 (313)
                      .. .+   + +..+..+++| ..++.++-
T Consensus       273 ~~-~~---~-~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NV-SV---M-RAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CH-HH---H-HHHHHTBCTTTCEEEECSC
T ss_pred             CH-HH---H-HHHHHHhhccCCEEEEEcc
Confidence            32 11   1 4466777775 77777663

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.40  E-value=0.061  Score=48.66  Aligned_cols=64  Identities=14%  Similarity=0.057  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCC
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .+.|.+|+++|=   +++.++.+..+..+|++|.+..|..-...     +.....+++|.++++|+|.. +..
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            378999999997   89999999999999999998876432211     23446789999999999988 654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.39  E-value=0.031  Score=51.19  Aligned_cols=107  Identities=19%  Similarity=0.152  Sum_probs=68.9

Q ss_pred             CCEEEEEcCChHHHH-HHHHHHhCCCCEEEecCCCCCc-------cccccC--CCHHHHh-hcCCEEEEec--C-CChhh
Q 021388          144 GKTVGIIGLGRIGMA-VAKRAEAFSCPINYYSRTEKPN-------LKYKYY--PSVVELA-SNCHILVVAC--P-LTEET  209 (313)
Q Consensus       144 g~~igiiG~G~iG~~-iA~~l~~~G~~V~~~~~~~~~~-------~~~~~~--~~l~e~~-~~aDvV~~~l--p-~~~~t  209 (313)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|....+.       .+....  .+.+++. .++|+|+..-  | .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            478999999999996 9999999999999999865421       122211  2344454 5799998763  3 22321


Q ss_pred             h-------cccCH-HHHhc--cCCCcE-EEEcCCCccccHHHHHHHHHhCCe
Q 021388          210 R-------HIINR-EVIDA--LGPKGV-LINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       210 ~-------~li~~-~~l~~--mk~ga~-lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      .       .++.+ +++..  ++...+ -|--+.|+.....-+...|+....
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            1       13332 33443  343334 455667888888888888887543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.36  E-value=0.038  Score=54.88  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=51.3

Q ss_pred             cEEEcCCCC-ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388           91 VRVTNTPDV-LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-  168 (313)
Q Consensus        91 I~v~n~~~~-~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-  168 (313)
                      -+..+-... .....||.+.-+-|-+.|-          ..|....   ...+.+++|.|||+|.+|..+|+.|...|. 
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~~g---~ekL~~arVLIVGaGGLGs~vA~~La~aGVG  351 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVR  351 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTTCC---HHHHHTCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcchhh---HHHHhCCeEEEECCCHHHHHHHHHHHHcCCC
Confidence            355554433 5677888887776666441          1232211   135899999999999999999999999998 


Q ss_pred             CEEEecCC
Q 021388          169 PINYYSRT  176 (313)
Q Consensus       169 ~V~~~~~~  176 (313)
                      ++..+|..
T Consensus       352 ~ItLvD~D  359 (615)
T 4gsl_A          352 KITFVDNG  359 (615)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            57788764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.34  E-value=0.019  Score=52.63  Aligned_cols=85  Identities=22%  Similarity=0.187  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc----ccc-----CCCHHHHhh-----cCCEEEEecCCCh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK----YKY-----YPSVVELAS-----NCHILVVACPLTE  207 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~----~~~-----~~~l~e~~~-----~aDvV~~~lp~~~  207 (313)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.++++++...    ...     ..++.+.+.     ..|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999999999999999999 99999986542111    110     123333322     4688877775322


Q ss_pred             hhhcccCHHHHhccCCCcEEEEcCC
Q 021388          208 ETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .     -+..+..|+++..++.++.
T Consensus       244 ~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 A-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             H-----HHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhcCCEEEEEec
Confidence            1     1445677778878877764

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.33  E-value=0.24  Score=46.05  Aligned_cols=123  Identities=16%  Similarity=0.111  Sum_probs=81.0

Q ss_pred             hhhcCcEEEcCCCCCh---HHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcC--ChHHHHHH
Q 021388           86 CKEKGVRVTNTPDVLT---DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGL--GRIGMAVA  160 (313)
Q Consensus        86 ~~~~gI~v~n~~~~~~---~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~--G~iG~~iA  160 (313)
                      +...+|+|.|.-|...   .+.++.     +.+.++.                  -+..+.|.+|+++|=  +++.++.+
T Consensus       143 a~~s~vPVING~g~~~HPtQaL~Dl-----~Ti~e~~------------------~~~~l~gl~ia~vGD~~~~va~S~~  199 (358)
T 4h31_A          143 GAFAGVPVWNGLTDEFHPTQILADF-----LTMLEHS------------------QGKALADIQFAYLGDARNNVGNSLM  199 (358)
T ss_dssp             HHHSSSCEEESCCSSCCHHHHHHHH-----HHHHHTT------------------TTCCGGGCEEEEESCTTSHHHHHHH
T ss_pred             hhhccCceECCCCcCCCchHHHHHH-----HHHHHHh------------------cCCCcCceEEEecCCCCcccchHHH
Confidence            3456899999766543   444442     3332211                  123588999999995  48999999


Q ss_pred             HHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEecCCC----hh---------hhc
Q 021388          161 KRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVACPLT----EE---------TRH  211 (313)
Q Consensus       161 ~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~lp~~----~~---------t~~  211 (313)
                      ..+..+|++|.+..|..-...              +  .....+++|.++.+|+|..-.-..    ++         ...
T Consensus       200 ~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y  279 (358)
T 4h31_A          200 VGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPY  279 (358)
T ss_dssp             HHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGG
T ss_pred             HHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCc
Confidence            999999999999887432111              1  223568999999999998543211    11         112


Q ss_pred             ccCHHHHhc-cCCCcEEEEcC
Q 021388          212 IINREVIDA-LGPKGVLINIG  231 (313)
Q Consensus       212 li~~~~l~~-mk~ga~lIn~~  231 (313)
                      -++.+.++. .||+++|.-+.
T Consensus       280 ~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          280 QVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CBCHHHHHHTTCTTCEEEECS
T ss_pred             ccCHHHHHhcCCCCcEEECCC
Confidence            367788875 47788888765

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.33  E-value=0.017  Score=52.94  Aligned_cols=86  Identities=16%  Similarity=0.225  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc-----CCCHHHHh----hcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY-----YPSVVELA----SNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~e~~----~~aDvV~~~lp~~~~  208 (313)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++++.     .++..     ..++.+.+    ...|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            47899999999999999999999999999999875431     12111     12332222    458988887763221


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                           -+..+..|+++..++.++..
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCCC
T ss_pred             -----HHHHHHHhhcCCEEEEeccc
Confidence                 15567788888888888754

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.32  E-value=0.013  Score=51.82  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEc---CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIG---LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG---~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.||++.|.|   .|.||+.+|+.|...|++|++.+|+..
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~   44 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   44 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChH
Confidence            47899999999   589999999999999999999988763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.31  E-value=0.013  Score=54.56  Aligned_cols=86  Identities=16%  Similarity=0.268  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---CCC---HHHHhhcCCEEEEecCCChhhhc
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---YPS---VVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~---l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++..     ++..   ..+   .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            478999999999999999999999999999987765321     2211   111   12233467888888764221   


Q ss_pred             ccCHHHHhccCCCcEEEEcCCC
Q 021388          212 IINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg  233 (313)
                        -+..+..++++..++.++..
T Consensus       271 --~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCCC
T ss_pred             --HHHHHHHhccCCEEEEeccC
Confidence              14567788888888888753

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.31  E-value=0.1  Score=50.33  Aligned_cols=100  Identities=17%  Similarity=0.197  Sum_probs=61.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCC---CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH-h
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSC---PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI-D  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~---~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l-~  219 (313)
                      ++|.|||+|.||+.+++.+.. .++   +|.+.|+.....       ++.+... ..+  .....+..+.    .+.+ +
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------~~~~~~g-~~~--~~~~Vdadnv----~~~l~a   79 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------DVAQQYG-VSF--KLQQITPQNY----LEVIGS   79 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------CHHHHHT-CEE--EECCCCTTTH----HHHTGG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------hHHhhcC-Cce--eEEeccchhH----HHHHHH
Confidence            358999999999999999874 566   688887654321       3333332 223  3333333322    1222 3


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH  263 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~  263 (313)
                      .++++-++||++-  ....-++.++..+.++.  ++|... ||.
T Consensus        80 Ll~~~DvVIN~s~--~~~~l~Im~acleaGv~--YlDTa~-E~~  118 (480)
T 2ph5_A           80 TLEENDFLIDVSI--GISSLALIILCNQKGAL--YINAAT-EPW  118 (480)
T ss_dssp             GCCTTCEEEECCS--SSCHHHHHHHHHHHTCE--EEESSC-CCC
T ss_pred             HhcCCCEEEECCc--cccCHHHHHHHHHcCCC--EEECCC-Ccc
Confidence            4556688999763  34556666666666666  899876 553

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.29  E-value=0.046  Score=50.74  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc----C---CCHHHHhh-----cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY----Y---PSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            57899999999999999999999999 799998776532     12211    1   23333222     4788887775


Q ss_pred             CChhhhcccCHHHHhccCCC-cEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPK-GVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~g-a~lIn~~r  232 (313)
                      .. .+   + +..+..++++ ..++.++-
T Consensus       275 ~~-~~---~-~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TA-QT---L-KAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CH-HH---H-HHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH---H-HHHHHHhhcCCCEEEEECC
Confidence            32 11   1 4567778888 77777764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.28  E-value=0.049  Score=48.90  Aligned_cols=60  Identities=22%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|+....         .+..       ...++.++++.+|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            57999994 9999999999999999999999876411         1111       01234556777777766654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.26  E-value=0.029  Score=50.30  Aligned_cols=61  Identities=11%  Similarity=0.168  Sum_probs=46.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc--c-------cccCCCHHHHhhcCCEEEEecCC
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL--K-------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      +++|.|.| .|.+|+.+++.|...|++|.+.+|++....  +       .. ..++.++++.+|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899998 699999999999999999999998743221  1       11 33466778899999877653

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.25  E-value=0.022  Score=52.64  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCCCEEE-ecCCCCCc---cc---------------------cccCCCHHHHhhcCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSCPINY-YSRTEKPN---LK---------------------YKYYPSVVELASNCHI  198 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~~-~~~~~~~~---~~---------------------~~~~~~l~e~~~~aDv  198 (313)
                      .+|||+|+|.||+.+++.|.. -++++.+ .|+.+...   .+                     .....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999986 4567654 45442210   00                     0001246677789999


Q ss_pred             EEEecCCCh
Q 021388          199 LVVACPLTE  207 (313)
Q Consensus       199 V~~~lp~~~  207 (313)
                      |+.|+|...
T Consensus        82 V~~atp~~~   90 (337)
T 1cf2_P           82 VIDCTPEGI   90 (337)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCchh
Confidence            999998553

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.25  E-value=0.045  Score=50.73  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc----C---CCHHHHhh-----cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY----Y---PSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 699998776532     12211    1   23433332     4788888776


Q ss_pred             CChhhhcccCHHHHhccCCC-cEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPK-GVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~g-a~lIn~~r  232 (313)
                      .. .+   + +..+..++++ ..++.++-
T Consensus       271 ~~-~~---~-~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RI-ET---M-MNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CH-HH---H-HHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH---H-HHHHHHHhcCCCEEEEEcc
Confidence            32 21   1 4567788888 88888774

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.24  E-value=0.13  Score=49.52  Aligned_cols=105  Identities=10%  Similarity=0.110  Sum_probs=65.9

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCC-------CC-----------------Ccc-------ccccC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRT-------EK-----------------PNL-------KYKYY  186 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~-------~~-----------------~~~-------~~~~~  186 (313)
                      +.++.|++|.|-|+|++|+..|+.|...|.+|+ +.|.+       .-                 ...       +....
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            346889999999999999999999999999987 44432       10                 000       00101


Q ss_pred             CCHHH-HhhcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          187 PSVVE-LASNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       187 ~~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      . .++ +-..||+++-|.     +.+.|+.+....+.  .-.+++-.+.+.+ ..+| .+.|.+..+.
T Consensus       327 ~-~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 P-NEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             S-SCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             c-CcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence            0 012 224788877665     34567666666662  2345666666664 5555 6777777776

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.24  E-value=0.091  Score=48.53  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=88.9

Q ss_pred             HHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCCh---HHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC
Q 021388           59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLT---DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD  135 (313)
Q Consensus        59 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~---~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~  135 (313)
                      ..++.++.  -.|.....+-..+ ...+...+|+|.|.-+...   .+.++.     +.+.++++               
T Consensus       112 arvLs~~~--D~IviR~~~~~~~-~~lA~~~~vPVINag~~~~HPtQaLaDl-----~Ti~e~~~---------------  168 (339)
T 4a8t_A          112 SRVLSRLV--DILMARVERHHSI-VDLANCATIPVINGMSDYNHPTQELGDL-----CTMVEHLP---------------  168 (339)
T ss_dssp             HHHHHHHC--SEEEEECSSHHHH-HHHHHHCSSCEEECCCSSCCHHHHHHHH-----HHHHHTCC---------------
T ss_pred             HHHHHHhC--CEEEEecCcHHHH-HHHHHhCCCCEEECCCCCcCcHHHHHHH-----HHHHHHhh---------------
Confidence            34555553  3444443322222 1223446899999865432   333433     33322210               


Q ss_pred             cccccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCE
Q 021388          136 YKLTTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHI  198 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDv  198 (313)
                        .|..+.|.+|+++|= +++.++++..+..+|++|.+..|..-...              +  .....+++ .++++|+
T Consensus       169 --~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDv  245 (339)
T 4a8t_A          169 --EGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADF  245 (339)
T ss_dssp             --TTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSE
T ss_pred             --cCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCE
Confidence              022488999999986 67889999999999999998887543211              1  22356788 9999999


Q ss_pred             EEEecC----CCh----h----h--hcccCHHHHhccCCCcEEEEcC
Q 021388          199 LVVACP----LTE----E----T--RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       199 V~~~lp----~~~----~----t--~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      |..-+-    ..+    +    .  ..-++.+.++.+|++++|.-+.
T Consensus       246 vytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          246 LYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             EEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             EEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            986331    001    1    0  1345777787788888877766

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.22  E-value=0.21  Score=47.91  Aligned_cols=41  Identities=12%  Similarity=0.092  Sum_probs=37.0

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +...++.|++|.|+|.|.+|..-++.|...|++|.++++..
T Consensus         5 P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            45567899999999999999999999999999999999753

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.19  E-value=0.12  Score=49.91  Aligned_cols=102  Identities=17%  Similarity=0.265  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC--Cccc---------------------cccCCCHHHHhhcC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK--PNLK---------------------YKYYPSVVELASNC  196 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~--~~~~---------------------~~~~~~l~e~~~~a  196 (313)
                      ++.|++|.|-|+|++|+..|+.|...|++|++. |.+..  .+.+                     .....+ +-+-..|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~-~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG-SILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS-CGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc-ccccccc
Confidence            589999999999999999999999999998864 32211  0000                     000111 1133579


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      |+++-|.     +.+.|+.+....++ -.+++-.+.+. ...++ .+.|.+..+.
T Consensus       320 DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          320 DILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             SEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             eEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            9887654     44678888888885 56778888887 45544 4677777776

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.18  E-value=0.049  Score=50.46  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc-----cccc----C---CCHHHHhh-----cCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL-----KYKY----Y---PSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-----~~~~----~---~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++..     ++..    .   .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 6999987765321     2111    1   23333332     4788887775


Q ss_pred             CChhhhcccCHHHHhccCCC-cEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPK-GVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~g-a~lIn~~r  232 (313)
                      ..+ +    -+..+..++++ ..++.++-
T Consensus       270 ~~~-~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVK-V----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECSC
T ss_pred             cHH-H----HHHHHHhhccCCcEEEEEec
Confidence            322 1    14567778888 88887764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.17  E-value=0.021  Score=52.74  Aligned_cols=85  Identities=26%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------cccccc---CCCH---HHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKY---YPSV---VELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~---~~~l---~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++      ..++..   ..+.   .++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            5789999999999999999999999999999887653      223221   1222   2233457999888863321  


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                         -+..+..++++..++.++.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               2556788899999998874

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.14  E-value=0.015  Score=49.83  Aligned_cols=91  Identities=15%  Similarity=0.052  Sum_probs=59.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHh---hcCCEEEEecCCC-h------hh
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELA---SNCHILVVACPLT-E------ET  209 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~---~~aDvV~~~lp~~-~------~t  209 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|.+.+|+...  ......++++++   ...|+++.+.... +      .+
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL--DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC--CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc--CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            367888889976 789999999999999999999987541  111122334444   4679988776432 1      00


Q ss_pred             h---------c-----ccCHHHHhccCCCcEEEEcCCC
Q 021388          210 R---------H-----IINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       210 ~---------~-----li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .         +     .+.+..++.|+++..+||++..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence            0         0     0124456678878889999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.029  Score=51.55  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----c--CCCHHHHhh-----cCCEEEEecCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----Y--YPSVVELAS-----NCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~--~~~l~e~~~-----~aDvV~~~lp~  205 (313)
                      .|+++.|+|. |.+|..+++.++..|++|++.+++++..     .+..    .  ..++.+.+.     ..|+|+.+...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            5789999999 8999999999999999999998876531     1111    0  124444333     47888887753


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .+.     -+..+..|+++..+|+++..
T Consensus       249 ~~~-----~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAA-----IEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHH-----HHHHTTSEEEEEEEEECCCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEeCC
Confidence            221     14566778888888888753

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.12  E-value=0.023  Score=51.92  Aligned_cols=60  Identities=18%  Similarity=0.205  Sum_probs=42.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHh--CCCCE-EEecCCCCC-c------cccc-cCCCHHHHhh-----cCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA--FSCPI-NYYSRTEKP-N------LKYK-YYPSVVELAS-----NCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~--~G~~V-~~~~~~~~~-~------~~~~-~~~~l~e~~~-----~aDvV~~~lp  204 (313)
                      .+|||||+|.||+.+++.+..  -++++ .++|++++. .      .+.. ...+.+++++     +.|+|+.++|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence            489999999999999999954  45654 467877554 1      1222 2345677754     5799999999

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.12  E-value=0.038  Score=51.97  Aligned_cols=87  Identities=17%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc-----CCCHHHH----h--hcCCEEEEecC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY-----YPSVVEL----A--SNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~----~--~~aDvV~~~lp  204 (313)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..     ..++.+.    .  ...|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            357899999999999999999999999 799998776532     12211     1233322    2  14899988886


Q ss_pred             CChhhhcccCHHHHhcc----CCCcEEEEcCC
Q 021388          205 LTEETRHIINREVIDAL----GPKGVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~m----k~ga~lIn~~r  232 (313)
                      ....+.    ...+..+    +++..++.++-
T Consensus       292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            432222    2334445    89999988874

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.09  E-value=0.045  Score=49.17  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=30.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            467999995 9999999999999999999999876

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.08  E-value=0.091  Score=50.80  Aligned_cols=94  Identities=14%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             ccCCCEEEEEcCCh----------HHHHHHHHHHhCCCCEEEecCCCCCcc----c------------cccCCCHHHHhh
Q 021388          141 KFTGKTVGIIGLGR----------IGMAVAKRAEAFSCPINYYSRTEKPNL----K------------YKYYPSVVELAS  194 (313)
Q Consensus       141 ~l~g~~igiiG~G~----------iG~~iA~~l~~~G~~V~~~~~~~~~~~----~------------~~~~~~l~e~~~  194 (313)
                      .+.|++|+|+|+--          -...+++.|...|++|.+|||......    +            .....++.+.++
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR  404 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence            47899999999853          677899999999999999999753210    1            233457888999


Q ss_pred             cCCEEEEecCCChhhhcccCHH-HHhccCCCcEEEEcCCCccccHH
Q 021388          195 NCHILVVACPLTEETRHIINRE-VIDALGPKGVLINIGRGPHVDER  239 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~-~l~~mk~ga~lIn~~rg~~vd~~  239 (313)
                      .+|+|++++...+ -+ -++-+ +...|+ +.+++|+ |+ +.|.+
T Consensus       405 ~ad~~vi~t~~~~-f~-~~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          405 DADALVIVTEWKI-FK-SPDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TCSEEEECSCCGG-GG-SCCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             CCCEEEEecCChH-hh-ccCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            9999999987643 22 23444 344555 5888987 44 34544

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.08  E-value=0.032  Score=48.27  Aligned_cols=94  Identities=11%  Similarity=0.056  Sum_probs=58.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcccc-c-------cCCCHHHHh---------hcCCEEEEe
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-K-------YYPSVVELA---------SNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-~-------~~~~l~e~~---------~~aDvV~~~  202 (313)
                      ...+|++.|.|. |.||+.+++.|...|++|++.+|+....... .       ...++++++         ...|+++.+
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~   83 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCV   83 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEc
Confidence            356889999974 7899999999999999999999876542210 0       011233333         267998887


Q ss_pred             cCCC-------hhhh----cc----------cCHHHHhccCCCcEEEEcCCCc
Q 021388          203 CPLT-------EETR----HI----------INREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       203 lp~~-------~~t~----~l----------i~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ....       +.+.    ..          +.+..++.|+++..+||++...
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           84 AGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            6421       1110    01          1234556676677899988643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.07  E-value=0.015  Score=48.77  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|+++.|+| .|.||+.+++.++..|++|++.+++++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~   74 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   74 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            578999999 699999999999999999999987654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.06  E-value=0.014  Score=52.49  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---C---CCHHHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---Y---PSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|+++.|+|. |.+|..+++.++.+|++|++.++++++..     +...   .   .++.+.+...|+|+. +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4789999998 99999999999999999999988665321     2111   1   112222355777777 653 1   


Q ss_pred             cccCHHHHhccCCCcEEEEcCC
Q 021388          211 HIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        .-+..+..|+++..++.++.
T Consensus       200 --~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC--
T ss_pred             --HHHHHHHhhccCCEEEEEeC
Confidence              12556677777777777764

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.06  E-value=0.046  Score=50.92  Aligned_cols=84  Identities=12%  Similarity=0.008  Sum_probs=50.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC--C--CCEE-EecCCCCC--cc--ccccCCCHHHHhhcC-------------------
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF--S--CPIN-YYSRTEKP--NL--KYKYYPSVVELASNC-------------------  196 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~--G--~~V~-~~~~~~~~--~~--~~~~~~~l~e~~~~a-------------------  196 (313)
                      .+|||||+|.||+.+++.+...  |  ++|. ++|+....  ..  +...+.++++++.+.                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            3799999999999999999875  3  4554 45643321  11  222234566665543                   


Q ss_pred             -CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          197 -HILVVACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       197 -DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                       |+|+.|+|......     .+...|+.|.-+|-..-.
T Consensus        85 ~DvVV~~t~~~~~a~-----~~~~AL~aGkhVVtaNkk  117 (358)
T 1ebf_A           85 PVILVDNTSSAYIAG-----FYTKFVENGISIATPNKK  117 (358)
T ss_dssp             CEEEEECSCCHHHHT-----THHHHHHTTCEEECCCCG
T ss_pred             CcEEEEcCCChHHHH-----HHHHHHHCCCeEEecCcc
Confidence             78888888543222     123455566666654433

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.04  E-value=0.084  Score=46.51  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=52.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhC-CCCEE-EecCCCCCccccccCCCHHHHhh-cCCEEEEecCCChhhhcccCHHHHhc
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAF-SCPIN-YYSRTEKPNLKYKYYPSVVELAS-NCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      .+|+|+|+ |.||+.+++.+... |+++. ++|+.          .++++++. .+|+|+-+.+- +.+...    ....
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------~dl~~~~~~~~DvvIDfT~p-~a~~~~----~~~a   65 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------DPLSLLTDGNTEVVIDFTHP-DVVMGN----LEFL   65 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------CCTHHHHHTTCCEEEECSCT-TTHHHH----HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------CCHHHHhccCCcEEEEccCh-HHHHHH----HHHH
Confidence            37999995 99999999998865 88876 55653          24666665 79998855531 222211    2222


Q ss_pred             cCCCcEEEEcCCCccccH-HHHHHHHH
Q 021388          221 LGPKGVLINIGRGPHVDE-RELVSALV  246 (313)
Q Consensus       221 mk~ga~lIn~~rg~~vd~-~al~~al~  246 (313)
                      ++.|.-+|-...|-..+. +.|.++.+
T Consensus        66 ~~~g~~~VigTTG~~~e~~~~l~~aa~   92 (245)
T 1p9l_A           66 IDNGIHAVVGTTGFTAERFQQVESWLV   92 (245)
T ss_dssp             HHTTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred             HHcCCCEEEcCCCCCHHHHHHHHHHHH
Confidence            445655555555632222 23444445

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.01  E-value=0.025  Score=52.56  Aligned_cols=83  Identities=11%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCC-CCEEEec--CCCC-Ccc----c-----------c--cc-CCCHHHHhh-cCCEEE
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFS-CPINYYS--RTEK-PNL----K-----------Y--KY-YPSVVELAS-NCHILV  200 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G-~~V~~~~--~~~~-~~~----~-----------~--~~-~~~l~e~~~-~aDvV~  200 (313)
                      .+|||+| .|.+|+.+++.|.... ++|.+..  ++.. ...    +           .  .. ..+.+++++ .+|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            4899999 9999999999998654 5676553  2221 110    0           0  00 014455556 899999


Q ss_pred             EecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          201 VACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +|+|.... .... ..   .++.|..+|+.+-
T Consensus        89 ~atp~~~~-~~~a-~~---~~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDLA-KKFE-PE---FAKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHHH-HHHH-HH---HHHTTCEEEECCS
T ss_pred             ECCCchHH-HHHH-HH---HHHCCCEEEECCc
Confidence            99984322 2121 22   2356888998874

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.00  E-value=0.14  Score=45.60  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=43.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc-------------cccc-------cCCCHHHHhhcCCEEEEe
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN-------------LKYK-------YYPSVVELASNCHILVVA  202 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------------~~~~-------~~~~l~e~~~~aDvV~~~  202 (313)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|+....             .+..       ...++.++++.+|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            46799998 59999999999999999999999875311             1111       112355667778887766


Q ss_pred             cC
Q 021388          203 CP  204 (313)
Q Consensus       203 lp  204 (313)
                      ..
T Consensus        84 a~   85 (313)
T 1qyd_A           84 LA   85 (313)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.00  E-value=0.03  Score=50.76  Aligned_cols=38  Identities=18%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE  177 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~  177 (313)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45899999999999999999999999997 577887543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.00  E-value=0.078  Score=51.30  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCcc----------------ccccCCCHHHHhh
Q 021388          141 KFTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KYKYYPSVVELAS  194 (313)
Q Consensus       141 ~l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~e~~~  194 (313)
                      .+.|++|+|+|+.          .-...+++.|...|++|.+|||......                ......++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            4789999999974          4778899999999999999999753210                0122356788899


Q ss_pred             cCCEEEEecCCChhhhcccCH-HHHhccCCCcEEEEcCCCccccHHHH
Q 021388          195 NCHILVVACPLTEETRHIINR-EVIDALGPKGVLINIGRGPHVDEREL  241 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~-~~l~~mk~ga~lIn~~rg~~vd~~al  241 (313)
                      .+|+|++++...+ -+. ++- ++.+.|+...+++|+ |+ +.|.+.+
T Consensus       412 ~ad~~vi~t~~~~-f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWDE-FVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCGG-GTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCcHH-hhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            9999999987542 222 343 444567776688886 54 3565543

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.99  E-value=0.022  Score=49.16  Aligned_cols=92  Identities=12%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccc-c-------ccCCCHHHHh---------hcCCEEEEecC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-Y-------KYYPSVVELA---------SNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-~-------~~~~~l~e~~---------~~aDvV~~~lp  204 (313)
                      .||++.|.| .|.||+.+++.|...|++|++.+|+...... .       ....++++++         ...|+|+.+..
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   81 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG   81 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence            567888887 4789999999999999999999987654321 0       0011223333         26799888764


Q ss_pred             CC-------hhhhc----c----------cCHHHHhccCCCcEEEEcCCCc
Q 021388          205 LT-------EETRH----I----------INREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       205 ~~-------~~t~~----l----------i~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..       +.+..    .          +.+..++.|+++..+||++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            21       11110    1          1244566676677889988643

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.98  E-value=0.09  Score=50.08  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccC--CCHHHHhhcCCEEEEecCC---Chhhh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYY--PSVVELASNCHILVVACPL---TEETR  210 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~--~~l~e~~~~aDvV~~~lp~---~~~t~  210 (313)
                      +.+|+|.|||+|..|.+.|+.|+..|++|.++|.+....      .+....  ....+.+..+|+|+..-..   .|...
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHH
Confidence            678999999999999999999999999999999765432      122111  1124555689998887422   22211


Q ss_pred             -------cccCH-HHH-hccCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          211 -------HIINR-EVI-DALGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       211 -------~li~~-~~l-~~mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                             .++.+ +.+ ..++...+-|--+.|.-....-+...|++..
T Consensus        83 ~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g  130 (439)
T 2x5o_A           83 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG  130 (439)
T ss_dssp             HHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   12332 122 2344445556666788887777888887654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.97  E-value=0.052  Score=49.92  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----cC--CC-HHH---Hh-----hcCCEEEEe
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----YY--PS-VVE---LA-----SNCHILVVA  202 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~~--~~-l~e---~~-----~~aDvV~~~  202 (313)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++++.     .++.    ..  .+ .++   ..     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            47899999999999999999999999999988765431     1221    11  12 222   22     258999888


Q ss_pred             cCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          203 CPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       203 lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      +.... +   + +..+..++++..++.++..
T Consensus       248 ~g~~~-~---~-~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEK-C---I-TIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHH-H---H-HHHHHHSCTTCEEEECSCC
T ss_pred             CCCHH-H---H-HHHHHHHhcCCEEEEEecC
Confidence            76322 1   1 4567888999999998753

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.95  E-value=0.028  Score=49.12  Aligned_cols=93  Identities=17%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccc---cCC---CHHHHhh-------cCCEEEEecCCC-
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYP---SVVELAS-------NCHILVVACPLT-  206 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~---~~~---~l~e~~~-------~aDvV~~~lp~~-  206 (313)
                      ..||++.|.|. |.||+.+|+.|...|++|++.+|+........   ...   +++++++       ..|+|+.+.... 
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~   99 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS   99 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            45789999985 67999999999999999999998876433211   112   2333433       359888776421 


Q ss_pred             ------hhhhc----c----------cCHHHHhccCCCcEEEEcCCCc
Q 021388          207 ------EETRH----I----------INREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       207 ------~~t~~----l----------i~~~~l~~mk~ga~lIn~~rg~  234 (313)
                            ..+..    .          +.+..+..|+++..+|+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          100 GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                  11110    0          1244566777778899988643

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.95  E-value=0.032  Score=49.68  Aligned_cols=61  Identities=13%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCC-CCEEEecCCCCCc-------cccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFS-CPINYYSRTEKPN-------LKYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G-~~V~~~~~~~~~~-------~~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +++|.|.|. |.+|+.+++.|...| ++|.+.+|++...       .+..       ...++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999997 999999999999888 9999999876532       1111       11245667889999988764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.92  E-value=0.06  Score=49.80  Aligned_cols=63  Identities=10%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ..+++|.|.|. |.||+.+++.|...|++|.+.+|+.....     ...       ...+++++++.+|+|+.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            46789999987 99999999999999999999998764321     111       11235667889999977654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=94.91  E-value=0.043  Score=47.70  Aligned_cols=92  Identities=17%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcccc-----ccCCCHHHHhhcC----CEEEEecCCCh-h--hhc
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-----KYYPSVVELASNC----HILVVACPLTE-E--TRH  211 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~e~~~~a----DvV~~~lp~~~-~--t~~  211 (313)
                      |++.|.| .|.||+.+|+.|...|++|++.+|+.+.....     ....++++++++.    |+|+.+..... .  -..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            4666776 47899999999999999999999876532111     1112345556544    99988764332 0  000


Q ss_pred             ----------ccCHHHHhccCCC--cEEEEcCCCccc
Q 021388          212 ----------IINREVIDALGPK--GVLINIGRGPHV  236 (313)
Q Consensus       212 ----------li~~~~l~~mk~g--a~lIn~~rg~~v  236 (313)
                                .+.+..++.|++.  ..+||++.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence                      1124455555433  788998876544

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.90  E-value=0.013  Score=51.58  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=42.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHHhC--CCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          146 TVGIIGL-GRIGMAVAKRAEAF--SCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       146 ~igiiG~-G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +|.|.|. |.+|+.+++.|...  |++|.+.+|++....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            3678886 99999999999988  999999998765321     111       11245677889999987664

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.90  E-value=0.016  Score=53.65  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|++|.|+|.|.+|...++.++.+|++|++.+++++
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            578999999999999999999999999999987654

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=94.87  E-value=0.11  Score=48.26  Aligned_cols=90  Identities=11%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+.|.+|+++|= +++.++++..+..+|++|.+..|..-...              +  .....+++ .++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            488999999986 68889999999999999998887543211              1  22356788 999999998633


Q ss_pred             C----C---C-hh-----h-hcccCHHHHhccCCCcEEEEcC
Q 021388          204 P----L---T-EE-----T-RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p----~---~-~~-----t-~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      -    .   . ++     . ..-++.+.++.+|++++|.-+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            1    0   0 11     0 1446788888888888888776

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.86  E-value=0.031  Score=47.94  Aligned_cols=64  Identities=19%  Similarity=0.082  Sum_probs=47.4

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhC--CCCEEEecCCCCCcc----cc-------ccCCCHHHHhhcCCEEEEecCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAF--SCPINYYSRTEKPNL----KY-------KYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~----~~-------~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ..+++|.|.| .|.||+.+++.|...  |++|.+.+|++....    ..       ....+++++++..|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999998 699999999999988  899999998753210    11       1123466778899999887653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.81  E-value=0.047  Score=48.89  Aligned_cols=63  Identities=16%  Similarity=0.103  Sum_probs=43.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-cc-------ccCCCHHHHhhc--CCEEEEecCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-KY-------KYYPSVVELASN--CHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-~~-------~~~~~l~e~~~~--aDvV~~~lp~  205 (313)
                      ..++|.|.| .|.||+.+++.|...|++|.+.+|+..... +.       ....+++++++.  .|+|+.+...
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            446788886 599999999999999999999998764311 11       111234556665  8999877654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.80  E-value=0.077  Score=48.91  Aligned_cols=86  Identities=20%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccc----c-c---c-C-----CCHHHHh------hcCCEEEE
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLK----Y-K---Y-Y-----PSVVELA------SNCHILVV  201 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~----~-~---~-~-----~~l~e~~------~~aDvV~~  201 (313)
                      .|++|.|+|.|.+|...++.++.+|++ |++.++++++...    . .   . .     .++.+.+      ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            478999999999999999999999997 8888876543110    1 0   0 0     1122211      25899998


Q ss_pred             ecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          202 ACPLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       202 ~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ++... .+   + ...+..++++..++.++-.
T Consensus       259 ~~g~~-~~---~-~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          259 CTGVE-SS---I-AAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CSCCH-HH---H-HHHHHHSCTTCEEEECCCC
T ss_pred             CCCCh-HH---H-HHHHHHhcCCCEEEEEccC
Confidence            87632 11   1 4567889999999998753

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=94.79  E-value=0.25  Score=47.27  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=31.9

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEE-ec
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY-YS  174 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~-~~  174 (313)
                      +.++.|+++.|.|+|++|+..|+.|...|.+|++ .|
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD  261 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG  261 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            3468999999999999999999999999999875 44

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.77  E-value=0.015  Score=51.36  Aligned_cols=60  Identities=13%  Similarity=0.091  Sum_probs=44.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhC--CCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAF--SCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      |+|.|.|. |.+|+.+++.|...  |++|.+.+|++....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            46788886 99999999999988  999999998765321     111       11245677889999987664

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.77  E-value=0.019  Score=50.53  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=46.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-------ccCCCHHHHhhcCCEEEEecC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-------KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-------~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+|+|.|.| .|.||+.+++.|...|++|.+.+|+.....+  .       ....++++++++.|+|+.+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            457888998 7999999999999999999999988754321  1       112245677889999987653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.76  E-value=0.012  Score=53.98  Aligned_cols=80  Identities=9%  Similarity=0.020  Sum_probs=54.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----cccc----CCC---HHHH-hhcCCEEEEecCCChhhhc
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----KYKY----YPS---VVEL-ASNCHILVVACPLTEETRH  211 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~~~----~~~---l~e~-~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+++.|+|+|.+|+.+++.|...|. |.+.|++++...    +...    ..+   ++++ ++++|.|+++++..+.  +
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--T  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--H
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--H
Confidence            5689999999999999999999999 999998775322    1111    122   3344 6789999999885433  3


Q ss_pred             ccCHHHHhccCCCcE
Q 021388          212 IINREVIDALGPKGV  226 (313)
Q Consensus       212 li~~~~l~~mk~ga~  226 (313)
                      +.-...++.+.+...
T Consensus       192 ~~~~~~ar~~~~~~~  206 (336)
T 1lnq_A          192 IHCILGIRKIDESVR  206 (336)
T ss_dssp             HHHHHHHHTTCTTSE
T ss_pred             HHHHHHHHHHCCCCe
Confidence            333445556666533

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.76  E-value=0.02  Score=52.48  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=44.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC-Ccc---------c--cccCCCHHHHhhc--CCEEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK-PNL---------K--YKYYPSVVELASN--CHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~-~~~---------~--~~~~~~l~e~~~~--aDvV~~~lp~~  206 (313)
                      .++||||+|.+|+..++.+ .-+++|. ++|+++. ...         +  ...+.++++++++  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   78 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFS   78 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcc
Confidence            4899999999999777766 5567765 6787652 211         2  2356799999874  89999999843

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.74  E-value=0.042  Score=49.60  Aligned_cols=36  Identities=25%  Similarity=0.229  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|++|.|.|. |.||+.+++.|...|++|.+.+|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            5789999987 99999999999999999999998764

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.74  E-value=0.043  Score=51.71  Aligned_cols=62  Identities=19%  Similarity=0.453  Sum_probs=45.1

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc------cc---cCC---CHHHHhhcCCEEEE
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK------YK---YYP---SVVELASNCHILVV  201 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~------~~---~~~---~l~e~~~~aDvV~~  201 (313)
                      +....+++|+|+|-|..|+.+++.++.+|++|.++| .+.....      ..   ...   .+.++++++|+|+.
T Consensus        19 ~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           19 GHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            445678999999999999999999999999999988 5432211      00   111   25567889998764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.73  E-value=0.045  Score=50.85  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            45889999999999999999999999998 57788764

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.73  E-value=0.13  Score=47.65  Aligned_cols=82  Identities=22%  Similarity=0.368  Sum_probs=54.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCC-C-Cccc-----c----cc-CCCHHHHhhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTE-K-PNLK-----Y----KY-YPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~-~-~~~~-----~----~~-~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .+||||| .|..|+.+.++|...-. ++....... . +...     +    .. ..+.+++..++|+|++|+|...   
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~---   90 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA---   90 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH---
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH---
Confidence            5799996 79999999999987643 555443221 1 1110     0    11 1245566688999999999553   


Q ss_pred             cccCHHHHhccCCCcEEEEcCCC
Q 021388          211 HIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                         .++....+ .|+.+||.|..
T Consensus        91 ---s~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           91 ---SYDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             ---HHHHHTTC-CSCEEEESSST
T ss_pred             ---HHHHHHHh-CCCEEEECChh
Confidence               34555666 79999999853

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.69  E-value=0.046  Score=49.59  Aligned_cols=109  Identities=15%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC--CEEEecC--CCCCccc-------c-------ccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC--PINYYSR--TEKPNLK-------Y-------KYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~--~V~~~~~--~~~~~~~-------~-------~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|+| .|.+|..++..|...|.  ++..+|+  ..+...+       .       ....+..+.++.+|+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4799999 99999999999987675  5788898  4422111       0       0000125678999999988753


Q ss_pred             Chh---hhc-c------cCHH---HHhccCCCcEEEEcCCCccccHHHHHHH--HHhCCeeEE
Q 021388          206 TEE---TRH-I------INRE---VIDALGPKGVLINIGRGPHVDERELVSA--LVEGRLGGA  253 (313)
Q Consensus       206 ~~~---t~~-l------i~~~---~l~~mk~ga~lIn~~rg~~vd~~al~~a--l~~~~l~ga  253 (313)
                      ...   ++. +      +-++   .+....+.+++++++..-=+-...+.+.  +...++.|.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeec
Confidence            321   100 0      0112   2233467899999744322222333333  333466655

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.69  E-value=0.059  Score=49.66  Aligned_cols=86  Identities=19%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc---CC-----CHH-HHh----hcCCEEEEec
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY---YP-----SVV-ELA----SNCHILVVAC  203 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~~-----~l~-e~~----~~aDvV~~~l  203 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..   ..     ++. ++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 799998766431     22211   11     111 121    2489999888


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      .... +   + ...+..++++..++.++-+
T Consensus       251 g~~~-~---~-~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEA-S---I-QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHH-H---H-HHHHHHSCTTCEEEECSCC
T ss_pred             CChH-H---H-HHHHHHhcCCCEEEEEecC
Confidence            6322 1   1 4567889999999988753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.66  E-value=0.013  Score=56.62  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=47.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccc----cCC---CHHHH-hhcCCEEEEecCCCh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYK----YYP---SVVEL-ASNCHILVVACPLTE  207 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~----~~~---~l~e~-~~~aDvV~~~lp~~~  207 (313)
                      .++|-|+|+|.+|+.+|+.|...|++|.+.|.+++...      +..    ...   .|+++ +++||+++.+++..+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            46899999999999999999999999999998765311      111    112   24443 688999987776543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.66  E-value=0.088  Score=47.15  Aligned_cols=37  Identities=14%  Similarity=0.072  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      ..+.||++.|.|. |.||+.+|+.|...|++|.+.+++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3589999999975 689999999999999999998876

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.65  E-value=0.053  Score=49.14  Aligned_cols=66  Identities=17%  Similarity=0.043  Sum_probs=45.4

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-------ccc----cC---CCHHHHhhc--CCEEEEe
Q 021388          140 TKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------KYK----YY---PSVVELASN--CHILVVA  202 (313)
Q Consensus       140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------~~~----~~---~~l~e~~~~--aDvV~~~  202 (313)
                      ..+.+++|.|.| .|.||+.+++.|...|++|.+.+|+.....       +..    ..   .+++++++.  +|+|+.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            457889999998 699999999999999999999988653211       111    01   234566776  9998877


Q ss_pred             cCC
Q 021388          203 CPL  205 (313)
Q Consensus       203 lp~  205 (313)
                      ...
T Consensus        97 A~~   99 (333)
T 2q1w_A           97 AAS   99 (333)
T ss_dssp             CCC
T ss_pred             cee
Confidence            643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.64  E-value=0.032  Score=51.89  Aligned_cols=85  Identities=20%  Similarity=0.310  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----cccc-----cCCCHHHHhh--------cCCEEEEec
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYK-----YYPSVVELAS--------NCHILVVAC  203 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l~e~~~--------~aDvV~~~l  203 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++.     ...++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            57899999999999999999999999 788888776432     1221     1224444433        378888776


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ... .+   + ...+..++++..++.++-
T Consensus       262 G~~-~~---~-~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVA-ET---V-KQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCH-HH---H-HHHHHHEEEEEEEEECSC
T ss_pred             CCH-HH---H-HHHHHHhccCCEEEEEec
Confidence            522 21   1 456777888888888774

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.64  E-value=0.024  Score=51.84  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc-----CCCHHHHh----hcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY-----YPSVVELA----SNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~e~~----~~aDvV~~~lp~~~~  208 (313)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++++.     .++..     ..++.+.+    ...|+|+.+....+ 
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~-  244 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK-  244 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence            57899999999999999999999999999998876432     12111     12333322    25788877765222 


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +   + +..+..++++..++.++-
T Consensus       245 ~---~-~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          245 A---F-SQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             H---H-HHHHHHEEEEEEEEECSC
T ss_pred             H---H-HHHHHHhccCCEEEEeCC
Confidence            1   1 456677888888888764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.63  E-value=0.044  Score=50.34  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=46.8

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhC-CCCEEEecCCCCCcc------ccc--------cCCCHHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAF-SCPINYYSRTEKPNL------KYK--------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~------~~~--------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+.+++|.|.| .|.||+.+++.|... |++|.+.+|+.....      +..        ...++.++++.+|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            47789999999 699999999999987 999999998765321      111        11235567889999986554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.63  E-value=0.051  Score=50.19  Aligned_cols=65  Identities=12%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCC-CCEEEecCCCCCc-------ccccc----C---CCHHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFS-CPINYYSRTEKPN-------LKYKY----Y---PSVVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G-~~V~~~~~~~~~~-------~~~~~----~---~~l~e~~~~aDvV~~~lp  204 (313)
                      .+.+++|.|.|. |.||+.+++.|...| ++|.+.+|+....       .....    .   .+++++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            478999999995 999999999999999 9999999875432       11110    1   134556778999987765


Q ss_pred             C
Q 021388          205 L  205 (313)
Q Consensus       205 ~  205 (313)
                      .
T Consensus       109 ~  109 (377)
T 2q1s_A          109 Y  109 (377)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.62  E-value=0.053  Score=47.91  Aligned_cols=40  Identities=28%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      ..+.||++.|.|. |.||+.+|+.|...|++|++.+|+...
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG   64 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3589999999976 679999999999999999999987654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.62  E-value=0.047  Score=49.64  Aligned_cols=64  Identities=13%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc----------------cccc-------cCCCHHHHhhcC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN----------------LKYK-------YYPSVVELASNC  196 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------------~~~~-------~~~~l~e~~~~a  196 (313)
                      .+.+++|.|.| .|.||+.+++.|...|++|.+.+|.....                .+..       ...++.++++.+
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            36789999999 59999999999999999999999865421                1111       112356678889


Q ss_pred             CEEEEecC
Q 021388          197 HILVVACP  204 (313)
Q Consensus       197 DvV~~~lp  204 (313)
                      |+|+.+..
T Consensus       102 d~Vih~A~  109 (351)
T 3ruf_A          102 DHVLHQAA  109 (351)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99877664

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=94.60  E-value=0.082  Score=46.06  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +.||++.|.|. |.||+.+++.|...|++|.+.+|+.+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            57889888876 89999999999999999999988764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.60  E-value=0.054  Score=47.62  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|-|.+   .||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999974   5999999999999999999998754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.60  E-value=0.047  Score=52.05  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCcc--------c--------cccCCCHHHHhhcC
Q 021388          143 TGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPNL--------K--------YKYYPSVVELASNC  196 (313)
Q Consensus       143 ~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~--------~~~~~~l~e~~~~a  196 (313)
                      .|++|+|+|+.          .-...+++.|...|++|.+|||..+...        +        .....++.+.++.+
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS  391 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence            58999999997          5788999999999999999998532111        0        12345788899999


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEc
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      |+|++++...+ -+.+ +   .+.|+ +.+++|+
T Consensus       392 d~~vi~~~~~~-~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          392 DVLVLGNGDEL-FVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             SEEEECSCCGG-GHHH-H---HSCCT-TCEEEES
T ss_pred             cEEEEeCCcHH-HHhh-h---HHhcC-CCEEEEC
Confidence            99999987532 2211 1   34455 6788887

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.60  E-value=0.063  Score=49.95  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=25.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPINYYS  174 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~~~~  174 (313)
                      .+|||+|+|.||+.+.+.|... .++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4899999999999999999865 57766554

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.58  E-value=0.067  Score=49.55  Aligned_cols=83  Identities=17%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEEEe-cCCCCCcc-----------c-c--------------ccCCCHHHHhhcC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPINYY-SRTEKPNL-----------K-Y--------------KYYPSVVELASNC  196 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~~~-~~~~~~~~-----------~-~--------------~~~~~l~e~~~~a  196 (313)
                      .+|||+|+|.||+.+++.+... +++|.+. |++++...           + +              ....+.++++..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3799999999999999998765 5776544 33221100           0 0              0011234455789


Q ss_pred             CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          197 HILVVACPLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      |+|+.|+|...... .. +  -..++.|..+|..+
T Consensus        83 DiV~eatg~~~s~~-~a-~--~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQ-NL-E--NIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHHH-HH-H--HTTTTTTCEEEECT
T ss_pred             CEEEECCCccccHH-HH-H--HHHHHCCCEEEECC
Confidence            99999998543211 10 1  24566776665543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.53  E-value=0.051  Score=48.60  Aligned_cols=61  Identities=16%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc----ccccCCCHHHHhhc--CCEEEEecC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL----KYKYYPSVVELASN--CHILVVACP  204 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~e~~~~--aDvV~~~lp  204 (313)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+.....    ......++.++++.  .|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            578999987 99999999999999999999997654310    11112345666664  899887764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.44  E-value=0.018  Score=52.24  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=42.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-----------cc-----cCCCHHHHhhcCCEEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-----------YK-----YYPSVVELASNCHILVVAC  203 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-----------~~-----~~~~l~e~~~~aDvV~~~l  203 (313)
                      +||+|||.|.+|+++|-.|+..+.  ++..||..++...+           ..     ...+.-+.++.||+|++..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence            589999999999999999886664  69999987642211           00     0112235689999999986

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.44  E-value=0.036  Score=50.85  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .|++|.|+|. |.+|..+++.++.+|++|++.+++.++
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~  196 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA  196 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            5789999998 999999999999999999999886653

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.43  E-value=0.061  Score=53.30  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999998 57788643

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.41  E-value=0.16  Score=46.52  Aligned_cols=88  Identities=2%  Similarity=-0.144  Sum_probs=61.8

Q ss_pred             cCCCEEEE-----EcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCCh----
Q 021388          142 FTGKTVGI-----IGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTE----  207 (313)
Q Consensus       142 l~g~~igi-----iG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~----  207 (313)
                      +. .+|++     +|=+++.++++..+..+|++|.+..|..-...     ......++++.++.+|+|..-.-..-    
T Consensus       167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~  245 (324)
T 1js1_X          167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN  245 (324)
T ss_dssp             CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC
T ss_pred             ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc
Confidence            56 79999     99999999999999999999999887543222     23446789999999999987443110    


Q ss_pred             -------hhhcccCHHHHhccCCCcEEEEcC
Q 021388          208 -------ETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       208 -------~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                             .....++++.++.+| +++|.-+.
T Consensus       246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcL  275 (324)
T 1js1_X          246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHCL  275 (324)
T ss_dssp             TTCCCCCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred             ccchHHHhcCcccCHHHHHhcC-CcEEECCC
Confidence                   012334555666555 55555554

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.39  E-value=0.069  Score=47.35  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcC-Ch--HHHHHHHHHHhCCCCEEEecCCC
Q 021388          140 TKFTGKTVGIIGL-GR--IGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~--iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ..+.||++.|.|. |.  ||+.+|+.|...|++|++.+|+.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            3589999999996 44  99999999999999999998876

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.37  E-value=0.046  Score=48.19  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   41 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999975 78999999999999999999988754

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.36  E-value=0.043  Score=50.71  Aligned_cols=84  Identities=11%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHHh-CCCCEEEe-cCCC--C--Ccc--------cc-c-cCC---CHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEA-FSCPINYY-SRTE--K--PNL--------KY-K-YYP---SVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~-~G~~V~~~-~~~~--~--~~~--------~~-~-~~~---~l~e~~~~aDvV~~~lp  204 (313)
                      .+|+|+| .|.+|+.+.+.|.. -++++..+ +++.  .  +..        +. . ...   +.++++.++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 69999999999987 34566554 3331  1  110        10 0 111   34455589999999998


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                      ... +.... .   ..++.|+.+||.|..
T Consensus        85 ~~~-s~~~~-~---~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEV-SHDLA-P---QFLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHH-HHHHH-H---HHHHTTCEEEECSST
T ss_pred             hHH-HHHHH-H---HHHHCCCEEEEcCCc
Confidence            432 22221 2   224679999999854

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.36  E-value=0.065  Score=52.08  Aligned_cols=62  Identities=21%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcccc--ccCCCHHHHhhcCCEEEEecCC
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY--KYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~--~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      +++|.|.| .|.||+.+++.|...|++|.+.+|+.......  .....+.+.+..+|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            68999999 69999999999999999999999886543221  1123345677899999876543

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.25  E-value=0.066  Score=49.39  Aligned_cols=30  Identities=33%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHh-CCCCEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEA-FSCPINYYS  174 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~~~~  174 (313)
                      .+|||+|+|.||+.+++.+.. -+++|.+.+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            489999999999999999875 457766543

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.25  E-value=0.086  Score=45.82  Aligned_cols=64  Identities=20%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcccc---c-cCC---CHHHHhh-------cCCEEEEecC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY---K-YYP---SVVELAS-------NCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~---~-~~~---~l~e~~~-------~aDvV~~~lp  204 (313)
                      .+.||++.|.| .|.||+.+++.|...|++|++.+|+.+.....   . ...   +++++++       ..|+++.+..
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   90 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   90 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47889998887 47899999999999999999998876532211   1 111   2333333       5799988764

>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}

Probab=94.19  E-value=0.18  Score=44.49  Aligned_cols=102  Identities=12%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHH-HHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV-ELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~-e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      ..+++|++||+-.   ++.+.|+.. +++.++|+++............+ +++.+||+|++.-.  .-..+-+ .++++.
T Consensus       114 ~~~~kV~vIG~~p---~l~~~l~~~-~~v~V~d~~p~~~~~~~~~~~~e~~~l~~~D~v~iTGs--TlvN~Ti-~~lL~~  186 (249)
T 3npg_A          114 DEIKRIAIIGNMP---PVVRTLKEK-YEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIASAS--CIVNGTL-DMILDR  186 (249)
T ss_dssp             SCCSEEEEESCCH---HHHHHHTTT-SEEEEECCSGGGCCSSEECGGGHHHHGGGCSEEEEETT--HHHHTCH-HHHHHH
T ss_pred             cCCCEEEEECCCH---HHHHHHhcc-CCEEEEECCCcccCCCCCChhHHHhhhccCCEEEEEee--eeccCCH-HHHHHh
Confidence            3558999999987   788888877 89999999886422112222344 58999999987642  2222233 567888


Q ss_pred             cCCCcEEEEcCCC-------------------ccccHHHHHHHHHhCCe
Q 021388          221 LGPKGVLINIGRG-------------------PHVDERELVSALVEGRL  250 (313)
Q Consensus       221 mk~ga~lIn~~rg-------------------~~vd~~al~~al~~~~l  250 (313)
                      .+++..+|=+|-.                   .+.|.+.+.+.++.|.-
T Consensus       187 ~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~~G~~  235 (249)
T 3npg_A          187 AKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLKLGSF  235 (249)
T ss_dssp             CSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHHHTCH
T ss_pred             CcccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHHcccc
Confidence            8887765544421                   24577778888877753

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.18  E-value=0.15  Score=46.32  Aligned_cols=117  Identities=16%  Similarity=0.220  Sum_probs=73.7

Q ss_pred             HHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCC-CCC---hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC
Q 021388           59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTP-DVL---TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG  134 (313)
Q Consensus        59 ~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~-~~~---~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~  134 (313)
                      ..++.++-  -.|......-..+. ..+.-.+|+|.|.. |..   ..+.|+.     +.+.+++               
T Consensus        90 arvls~~~--D~iviR~~~~~~~~-~lA~~~~vPVINag~g~~~HPtQ~LaDl-----~Ti~e~~---------------  146 (306)
T 4ekn_B           90 IRVISGYA--DIIVLRHPSEGAAR-LASEYSQVPIINAGDGSNQHPTQTLLDL-----YTIMREI---------------  146 (306)
T ss_dssp             HHHHHHHC--SEEEEECSSTTHHH-HHHHHCSSCEEESCSSSSCCHHHHHHHH-----HHHHHHH---------------
T ss_pred             HHHHHHhC--cEEEEEcCChHHHH-HHHHhCCCCEEeCCCCCCcCcHHHHHHH-----HHHHHHh---------------
Confidence            34555553  34444443322221 23344689999984 333   3444443     3332221               


Q ss_pred             CcccccccCCCEEEEEcC---ChHHHHHHHHHHhC-CCCEEEecCCCCCc----------ccc--ccCCCHHHHhhcCCE
Q 021388          135 DYKLTTKFTGKTVGIIGL---GRIGMAVAKRAEAF-SCPINYYSRTEKPN----------LKY--KYYPSVVELASNCHI  198 (313)
Q Consensus       135 ~~~~~~~l~g~~igiiG~---G~iG~~iA~~l~~~-G~~V~~~~~~~~~~----------~~~--~~~~~l~e~~~~aDv  198 (313)
                          | .+.|.+|+++|=   |++.++++..+..+ |++|.+..|..-..          .+.  ....++++.++++|+
T Consensus       147 ----g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDv  221 (306)
T 4ekn_B          147 ----G-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDV  221 (306)
T ss_dssp             ----S-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSE
T ss_pred             ----C-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCE
Confidence                1 378999999997   58999999999999 99999887743211          122  235689999999999


Q ss_pred             EEEec
Q 021388          199 LVVAC  203 (313)
Q Consensus       199 V~~~l  203 (313)
                      |....
T Consensus       222 vy~~~  226 (306)
T 4ekn_B          222 LYVTR  226 (306)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            98643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.17  E-value=0.054  Score=49.81  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++++
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            47889999999999999999999999 7999988764

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.16  E-value=0.055  Score=49.89  Aligned_cols=30  Identities=27%  Similarity=0.276  Sum_probs=24.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC---CCCEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF---SCPINYYS  174 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~---G~~V~~~~  174 (313)
                      .+|||+|+|.||+.+.+.|...   .++|.+.+
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain   33 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            3799999999999999998754   47776553

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=94.15  E-value=0.17  Score=48.03  Aligned_cols=90  Identities=9%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             cCCCEEEEEc-----CCh---HHHHHHHHHHhCCCCEEEecCCCCC-c-------------cc--cccCCCHHHHhhcCC
Q 021388          142 FTGKTVGIIG-----LGR---IGMAVAKRAEAFSCPINYYSRTEKP-N-------------LK--YKYYPSVVELASNCH  197 (313)
Q Consensus       142 l~g~~igiiG-----~G~---iG~~iA~~l~~~G~~V~~~~~~~~~-~-------------~~--~~~~~~l~e~~~~aD  197 (313)
                      +.|++|+++|     +|.   +.++++..+..+|++|.+..|..-. .             .|  +....++++.++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            8899999997     354   9999999999999999998875421 1             12  133578999999999


Q ss_pred             EEEEecCCC---------------hh----------------hhcccCHHHHhccCC-CcEEEEcC
Q 021388          198 ILVVACPLT---------------EE----------------TRHIINREVIDALGP-KGVLINIG  231 (313)
Q Consensus       198 vV~~~lp~~---------------~~----------------t~~li~~~~l~~mk~-ga~lIn~~  231 (313)
                      +|..-+-..               +.                ...-++.+.++.+|+ +++|.-+.
T Consensus       266 VVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcL  331 (418)
T 2yfk_A          266 VVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCL  331 (418)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             EEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCC
Confidence            998854211               00                112457788888875 77777665

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.13  E-value=0.031  Score=50.91  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----c-C-CCHHHHhh-----cCCEEEEecCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----Y-Y-PSVVELAS-----NCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~-~-~~l~e~~~-----~aDvV~~~lp~  205 (313)
                      .|+++.|.|. |.||..+++.++..|++|++.+++.+..     .+..    . . .++.+.+.     ..|+++.+...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5789999998 9999999999999999999998765321     1111    0 1 23333332     36777776652


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        .+    -...+..++++..++.++-
T Consensus       225 --~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --HH----HHHHHTTEEEEEEEEECCC
T ss_pred             --HH----HHHHHHHHhcCCEEEEEec
Confidence              11    2556677788888877764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.11  E-value=0.039  Score=50.52  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-----cCCCHHHHh------hcCCEEEEecCC
Q 021388          143 TGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-----YYPSVVELA------SNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~e~~------~~aDvV~~~lp~  205 (313)
                      .|++|.|+|.| .+|..+++.++..|++|++.+++.++..     +..     ...++.+.+      ...|+|+-++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            57899999998 9999999999999999999988765321     111     012232221      146777776652


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      . .+     .+.+..++++..++.+|-
T Consensus       224 ~-~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 P-DG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             H-HH-----HHHHHTEEEEEEEEECCC
T ss_pred             h-hH-----HHHHHHhcCCCEEEEEee
Confidence            2 11     234467788888888764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.08  E-value=0.028  Score=51.90  Aligned_cols=84  Identities=19%  Similarity=0.163  Sum_probs=55.5

Q ss_pred             CCCEEEEE-cCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-----cCCCHHHHhh-----cCCEEEEecCCC
Q 021388          143 TGKTVGII-GLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-----YYPSVVELAS-----NCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igii-G~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~e~~~-----~aDvV~~~lp~~  206 (313)
                      .|++|.|+ |.|.+|..+++.++..|++|++.++++++..     +..     ...++.+.+.     ..|+|+.++...
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            57899999 6899999999999999999999998764321     111     0122322222     367777666521


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                            .-...+..++++..++.++.
T Consensus       247 ------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          247 ------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             ------GHHHHHHTEEEEEEEEECCC
T ss_pred             ------HHHHHHHHhccCCEEEEEEe
Confidence                  12445667777777777763

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.06  E-value=0.051  Score=47.73  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|.+.+|+.+
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   42 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHH
Confidence            367899999975 78999999999999999999988653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.05  E-value=0.082  Score=47.67  Aligned_cols=60  Identities=10%  Similarity=0.092  Sum_probs=44.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|+.....     +..       ...++.++++.+|+|+.+..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            5899998 599999999999999999999998765321     111       11235567888999877664

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.04  E-value=0.12  Score=46.13  Aligned_cols=60  Identities=17%  Similarity=0.116  Sum_probs=43.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecC-CCCC---c------c----cc-------ccCCCHHHHhhcCCEEEE
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSR-TEKP---N------L----KY-------KYYPSVVELASNCHILVV  201 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~-~~~~---~------~----~~-------~~~~~l~e~~~~aDvV~~  201 (313)
                      ||+|.|.| .|.||+.+++.|...|++|.+..| ++..   .      .    ..       ....+++++++.+|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            67899998 699999999999999999998877 4321   0      0    00       112346678889999877


Q ss_pred             ec
Q 021388          202 AC  203 (313)
Q Consensus       202 ~l  203 (313)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.03  E-value=0.039  Score=50.62  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcc-----ccccCCCH-------HHHhh--cCCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNL-----KYKYYPSV-------VELAS--NCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~-----~~~~~~~l-------~e~~~--~aDvV~~~lp~~  206 (313)
                      .|++|.|+|.|.+|...++.++.+  |++|++.++++++..     ++....+.       +++..  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            688999999999999999999999  999999998754321     22111111       11111  467777766532


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      . +   + +..+..++++..++.++.
T Consensus       250 ~-~---~-~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          250 E-T---T-YNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             H-H---H-HHHHHHEEEEEEEEECCC
T ss_pred             H-H---H-HHHHHHhhcCCEEEEeCC
Confidence            1 1   1 345566677777776653

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.03  E-value=0.072  Score=48.52  Aligned_cols=65  Identities=12%  Similarity=0.097  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc----------------cccc-------cCCCHHHHhhcC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN----------------LKYK-------YYPSVVELASNC  196 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------------~~~~-------~~~~l~e~~~~a  196 (313)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+.+|+....                ....       ...+++++++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            477899999998 9999999999999999999998865310                1111       012355678889


Q ss_pred             CEEEEecCC
Q 021388          197 HILVVACPL  205 (313)
Q Consensus       197 DvV~~~lp~  205 (313)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            998877653

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=94.03  E-value=0.12  Score=47.22  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=29.2

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +++|.|.| .|.||+.+++.|...|++|.+.+|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            47899998 599999999999999999999988653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.98  E-value=0.22  Score=44.69  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--CccccccCCCHHHHhhcCCEEEEecCCChh----------h
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVVACPLTEE----------T  209 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~----------t  209 (313)
                      +.|++|.|+|....-...++.|...|++|..+..+..  ...+.....++.+.++++|+|+...|....          .
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            6788999999999999999999999999987643221  112222334566778899998864332110          1


Q ss_pred             hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ...++++.++.+++..++. ++    +|.-++.+++.+.++.
T Consensus        83 ~~~~~~~~l~~~~~l~~i~-~G----~d~id~~~~~~~~gi~  119 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY-SG----ISNTYLNQCMKKTNRT  119 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHHTCE
T ss_pred             CccchHHHHHhCCCCCEEE-ec----CCCHHHHHHHHHcCCe
Confidence            1236788999998877766 32    3566665566666665

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.95  E-value=0.033  Score=48.78  Aligned_cols=61  Identities=11%  Similarity=0.196  Sum_probs=45.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--ccc-------cCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KYK-------YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~-------~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|++....  +..       ...++.++++..|+|+.+...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            57899987 99999999999999999999998765321  111       112356678889999877643

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.95  E-value=0.048  Score=50.00  Aligned_cols=66  Identities=20%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHHhC-CC-CEEEecCCCCCc---------ccc-------ccCCCHHHHhhcCCEEE
Q 021388          140 TKFTGKTVGIIG-LGRIGMAVAKRAEAF-SC-PINYYSRTEKPN---------LKY-------KYYPSVVELASNCHILV  200 (313)
Q Consensus       140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~-G~-~V~~~~~~~~~~---------~~~-------~~~~~l~e~~~~aDvV~  200 (313)
                      ..+.|++|.|.| .|.||+.+++.|... |+ +|.+++|++...         ...       ....++.++++..|+|+
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi   96 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICI   96 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence            347899999998 599999999999988 98 899999875321         111       11123556788999998


Q ss_pred             EecCC
Q 021388          201 VACPL  205 (313)
Q Consensus       201 ~~lp~  205 (313)
                      .+...
T Consensus        97 h~Aa~  101 (344)
T 2gn4_A           97 HAAAL  101 (344)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            77653

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=93.94  E-value=0.066  Score=46.72  Aligned_cols=39  Identities=13%  Similarity=0.150  Sum_probs=30.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++.+
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   44 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE   44 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH
Confidence            4688999999985 78999999999999999999988543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=93.93  E-value=0.087  Score=48.20  Aligned_cols=39  Identities=15%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHHh--CCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIG-LGRIGMAVAKRAEA--FSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG-~G~iG~~iA~~l~~--~G~~V~~~~~~~~  178 (313)
                      .++.+++|.|.| .|.||+.+++.|..  .|++|.+.+|...
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            357899999995 59999999999998  8999999988553

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.93  E-value=0.072  Score=48.88  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             CCCEEEEE-cCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGII-GLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igii-G~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|++|.|+ |.|.+|...++.++.+|++|++.+++++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~  186 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE  186 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            68999999 7999999999999999999999988654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=93.92  E-value=0.25  Score=43.00  Aligned_cols=39  Identities=10%  Similarity=0.131  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      ++.||++.|.|. |.||+.+|+.|...|++|++.+|+.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            578999999986 789999999999999999999987653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.92  E-value=0.037  Score=51.32  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc-----cccc-----CCCHHHHhh-----cCCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL-----KYKY-----YPSVVELAS-----NCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-----~~~~-----~~~l~e~~~-----~aDvV~~~lp~~  206 (313)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++++..     ++..     ..++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            57899999999999999999999999 5888887654321     2110     123322221     367777766521


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                       .+    -+..+..++++..++.++-
T Consensus       270 -~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 -EI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             -HH----HHHHHHTEEEEEEEEECCC
T ss_pred             -HH----HHHHHHHHhcCCEEEEeCC
Confidence             11    1445677778877777764

>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}

Probab=93.91  E-value=0.16  Score=45.28  Aligned_cols=83  Identities=12%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      ...|++|++||+-    +..+.++.-++++.+++++++...  ......++++.+||+|++.-.  .-..+-+ ..+|+.
T Consensus       138 ~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~E~~p~~g~--~p~~~~~~~lp~~D~viiTgs--tlvN~Tl-~~lL~~  208 (270)
T 3l5o_A          138 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD--YPLPASEFILPECDYVYITCA--SVVDKTL-PRLLEL  208 (270)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC--EEGGGHHHHGGGCSEEEEETH--HHHHTCH-HHHHHH
T ss_pred             ccCCCEEEEECCc----hhHHHHHhcCCCEEEEECCCCCCC--CChhHHHHhhccCCEEEEEee--hhhcCCH-HHHHhh
Confidence            4689999999985    455667777899999999875322  112234568899999887642  1111222 567787


Q ss_pred             cCCCcEEEEcCC
Q 021388          221 LGPKGVLINIGR  232 (313)
Q Consensus       221 mk~ga~lIn~~r  232 (313)
                      .|+...+|=+|-
T Consensus       209 ~~~a~~vvl~GP  220 (270)
T 3l5o_A          209 SRNARRITLVGP  220 (270)
T ss_dssp             TTTSSEEEEEST
T ss_pred             CCCCCEEEEECC
Confidence            887776665553

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=93.90  E-value=0.25  Score=46.56  Aligned_cols=63  Identities=11%  Similarity=0.147  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcC-----C---hHHHHHHHHHHhCCCCEEEecCCCCC-c-------------cc--cccCCCHHHHhhcC
Q 021388          141 KFTGKTVGIIGL-----G---RIGMAVAKRAEAFSCPINYYSRTEKP-N-------------LK--YKYYPSVVELASNC  196 (313)
Q Consensus       141 ~l~g~~igiiG~-----G---~iG~~iA~~l~~~G~~V~~~~~~~~~-~-------------~~--~~~~~~l~e~~~~a  196 (313)
                      .|.|++|+++|-     |   ++.++++..+..+|++|.+..|..-. .             .+  +....++++.++.+
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a  267 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA  267 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence            478999999973     4   78899999999999999988875321 1             01  12357899999999


Q ss_pred             CEEEEec
Q 021388          197 HILVVAC  203 (313)
Q Consensus       197 DvV~~~l  203 (313)
                      |+|..-+
T Consensus       268 DvVytd~  274 (399)
T 3q98_A          268 DIVYPKS  274 (399)
T ss_dssp             SEEEECC
T ss_pred             CEEEecC
Confidence            9998765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.89  E-value=0.021  Score=52.15  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc------ccccc-----CCCHHHHh-----hcCCEEEEecCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKY-----YPSVVELA-----SNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~-----~~~l~e~~-----~~aDvV~~~lp~  205 (313)
                      .|++|.|+|. |.||..+++.++..|++|++.++++++.      .+...     ..++.+.+     ...|+|+.+...
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            5789999999 9999999999999999999998765421      12110     11222222     136777766542


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg  233 (313)
                        .    .-...+..++++..++.++..
T Consensus       229 --~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          229 --E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             --H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             --c----hHHHHHHHHhhCCEEEEEeec
Confidence              1    124566777777777777643

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=93.87  E-value=0.16  Score=45.76  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc------------ccc-------ccCCCHHHHhhcCCEEEEec
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LKY-------KYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~~-------~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +++|.|.| .|.||+.+++.|...|++|.+..|+....            ...       ....+++++++.+|+|+.+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            68999999 79999999999999999999876654311            011       11235677888999987654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.86  E-value=0.18  Score=45.90  Aligned_cols=95  Identities=16%  Similarity=0.241  Sum_probs=61.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHHh---CCCCEEEecCCCCCccc---------c--ccC----CCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEA---FSCPINYYSRTEKPNLK---------Y--KYY----PSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~---~G~~V~~~~~~~~~~~~---------~--~~~----~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|+| .|.+|..++..|..   +.-++..+|..+. ..+         .  ...    .+..+.+++||+|+++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~-~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT-HHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC-chhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            4899999 99999999999974   3457899998762 111         1  111    2456789999999998753


Q ss_pred             C--h-hhhc-cc--C----H---HHHhccCCCcEEEEcCCCccccHHHHH
Q 021388          206 T--E-ETRH-II--N----R---EVIDALGPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       206 ~--~-~t~~-li--~----~---~~l~~mk~ga~lIn~~rg~~vd~~al~  242 (313)
                      .  | .++. ++  |    +   +.+....|++++++++  +.+|.-..+
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            2  2 1111 11  1    1   1223346889999995  566665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	1e-49
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	9e-41
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	4e-39
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	6e-36
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	8e-35
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	7e-27
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	4e-26
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-23
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	6e-18
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	2e-16
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	2e-15
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	6e-14
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	6e-13
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	9e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	9e-12
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-08
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-07
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	6e-05
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	7e-04
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	0.002
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	0.003

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  161 bits (408), Expect = 1e-49
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 100 LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK--LTTKFTGKTVGIIGLGRIGM 157
           +T   A++A+ L+L   RR  E ++ +R+  W   +    +  K   KT+GI G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 158 AVAKRAEAFSCPINYYSRTEKPNLKYK-----YYPSVVELASNCHILVVACPLTEETRHI 212
           A+AKRA+ F   I+Y+      +         ++ S+  L S      +  P T ETR+ 
Sbjct: 61  ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120

Query: 213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLE 272
            N+  I +L    +++N  RG  VD   +V+AL  GRL  AG DVF  EP++ E  + L 
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLP 180

Query: 273 NVVLMPHVGS 282
           N  L PH+GS
Sbjct: 181 NTFLFPHIGS 190

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  138 bits (348), Expect = 9e-41
 Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 4/184 (2%)

Query: 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
               A+ A+ L+LA  R++  +D  +R   WK+  +   T+  GKTVG++GLGRIG  VA
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVA 60

Query: 161 KRAEAFSCPINYYSRTEKPNLKYK---YYPSVVELASNCHILVVACPLTEETRHIINREV 217
           +R  AF   +  Y     P    +      S+ +L +    + V  P T ET  +I++E 
Sbjct: 61  QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120

Query: 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLM 277
           +    P  +++N  RG  VDE  L  A+  G +  AGLDVF  EP     LF L  VV+ 
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVT 180

Query: 278 PHVG 281
           PH+G
Sbjct: 181 PHLG 184

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (337), Expect = 4e-39
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 7/187 (3%)

Query: 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
           T  VA+L IG +L +LR + E++     G   K     + +  GK +GIIG G IG  + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG-SFEARGKKLGIIGYGHIGTQLG 60

Query: 161 KRAEAFSCPINYYSRTEKPNLKY-KYYPSVVELASNCHILVVACPLTEETRHIINREVID 219
             AE+    + +Y    K  L        + +L +   ++ +  P    T++++  + I 
Sbjct: 61  ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 120

Query: 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-----LFGLENV 274
            + P  +LIN  RG  VD   L  AL    L GA +DVF  EP    +     L   +NV
Sbjct: 121 LMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180

Query: 275 VLMPHVG 281
           +L PH+G
Sbjct: 181 LLTPHIG 187

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  125 bits (315), Expect = 6e-36
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKR 162
           VA+  + ++L+++R    S  + R G W   D            VG +  GRIG+AV +R
Sbjct: 3   VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62

Query: 163 AEAFSCPINYYSRT-----EKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217
              F   ++Y  R       +  L   ++ +  ++   C ++ + CPL  ET H+IN E 
Sbjct: 63  LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122

Query: 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVL 276
           +        ++N  RG   D   +  AL  GRL G   DV+  +P   +     +    +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182

Query: 277 MPHVG 281
            PH+ 
Sbjct: 183 TPHIS 187

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  123 bits (308), Expect = 8e-35
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)

Query: 102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFT------GKTVGIIGLGRI 155
           ++ AD  +  +L + RR     + +R G   +   ++    +      G+T+GIIGLGR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 156 GMAVAKRAEAFSCPINYYSRT----EKPNLKYKYYPSVVELASNCHILVVACPLTEETRH 211
           G AVA RA+AF   + +Y        +  L  +   ++ +L  +   + + C L E   H
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LF 269
           +IN   +  +     L+N  RG  VDE+ L  AL EGR+ GA LDV E+EP    +  L 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 270 GLENVVLMPHVG 281
              N++  PH  
Sbjct: 181 DAPNLICTPHAA 192

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  102 bits (253), Expect = 7e-27
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK 161
           D VA+ A+ L+LA  +R+ +    ++ G + +          G+ V ++GLG IG  V K
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGK 59

Query: 162 RAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL 221
              A    +  +SRT K    +++  S+ E        V A PL + TR ++  + +  +
Sbjct: 60  ILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 118

Query: 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLENVVLMPH 279
               V +N+GR   +D   ++  L E        DV+       +  E F L NVV  P 
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178

Query: 280 VG 281
           V 
Sbjct: 179 VA 180

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score =  100 bits (249), Expect = 4e-26
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 15/196 (7%)

Query: 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
              +A+ A+   L +LR + +    +++G ++K    +  +   +TVG++G G IG    
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61

Query: 161 KRAEAFSCPINYYSRTEKPNLKYKYYPS-VVELASNCHILVVACPLTEETRHIINREVID 219
           K  + F   +  Y           +    + +L     ++ +  P  E+  HIIN    +
Sbjct: 62  KLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN 121

Query: 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP--------------HVP 265
            + P  ++IN  R   +D + ++S L  G+L G G+D +E E                + 
Sbjct: 122 LMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW 181

Query: 266 EELFGLENVVLMPHVG 281
           +EL G+ NVVL PH+ 
Sbjct: 182 DELLGMPNVVLSPHIA 197

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 92.9 bits (229), Expect = 3e-23
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 17/194 (8%)

Query: 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163
           +A+ A      +LR+    D  V     +     +  +   + VG++G G IG    +  
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCH--ILVVACPLTEETRHIINREVIDAL 221
           E F   +  Y     P L+ K Y             ++ +  P      H+IN E I  +
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122

Query: 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-------------- 267
               V++N+ RGP VD   ++  L  G++ G  +DV+E E  +  E              
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 182

Query: 268 LFGLENVVLMPHVG 281
           L    NV++ P   
Sbjct: 183 LIARPNVLVTPKTA 196

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 76.2 bits (187), Expect = 6e-18
 Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 43/161 (26%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           + +   +    E+EL + F + +   + +                    +   AE +  +
Sbjct: 3   LYVNFELPPEAEEELRKYFKIVRGGDLGNVEAA--------------LVSRITAEELAKM 48

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           P+L+ +   + GLD +           V             +   +++  +R        
Sbjct: 49  PRLKFIQVVTAGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVR-------- 99

Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF 166
                                +     G     +AKR +  
Sbjct: 100 --------------------NLITYATGGRPRNIAKREDYI 120

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.5 bits (177), Expect = 2e-16
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
           VL+A  +       L  +    ++    D+ + L A      A++  +    DAE++ A 
Sbjct: 5   VLIADKLAPSTVAALGDQVE-VRWVDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAA 62

Query: 66  PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
           PKL+IV+   VGLD VD+     +GV V N P   +   A    G  +A   RL  +  +
Sbjct: 63  PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF 122

Query: 126 VRSGKWK 132
           V      
Sbjct: 123 VPDAVNV 129

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 6   VLMACPMNTYLEQELERRFNLFKFWTVSDKTQ-FLKAQQNNIRAVVGNATAGADAELIDA 64
           +L+  P+           +++         T   +     ++ A++         E+ID 
Sbjct: 4   ILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63

Query: 65  LP-KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
           +P  ++ +S++S+G D +D+  CK +G++V N P   T    D+A      +    
Sbjct: 64  IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 6e-14
 Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 1/117 (0%)

Query: 16  LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFS 75
           +E  + +      F       +  +   N     +   T     E ++    L I+    
Sbjct: 14  VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIG 73

Query: 76  VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK 132
            G D +D+    + G+ V N P          +I +     R +  +         K
Sbjct: 74  SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPDSLK 129

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 62.8 bits (152), Expect = 6e-13
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 48  AVVGNATAGADAELIDA--LPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
            +    T    A + +      ++ ++  +VG D +DM   K+ G+R++N P      V 
Sbjct: 47  GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVH 106

Query: 106 DLAIGLMLAVLRRLCESDRYVRSG 129
           ++    +  ++  L + +      
Sbjct: 107 NMVYFSLQHLVDFLTKGETSTEVT 130

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 63.4 bits (154), Expect = 9e-13
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 8/82 (9%)

Query: 58  DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
             E I     L++  +  +G D VD+    ++ V V       +  +   A         
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREI 163

Query: 118 RLCESD--------RYVRSGKW 131
             C  +          V+ G  
Sbjct: 164 LECFFEGRPIRDEYLIVQGGAL 185

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.6 bits (144), Expect = 9e-12
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 15  YLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVS 72
           +L++  +   ++   +T    T    A       VV        AE + AL    +  +S
Sbjct: 15  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 74

Query: 73  SFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK 132
             +VG+D +DM K KE G ++TN P          A+  M+             +  +  
Sbjct: 75  LRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLELVEGKEAETP 131

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 6   VLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDA 64
            L+   ++    + L    +   +F   +   + LK    +   +   +      ++I+A
Sbjct: 7   FLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINA 66

Query: 65  LPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR 124
             KL  + +F++G ++VD+    ++G+ V N P   T +  +     +   L +  ++  
Sbjct: 67  AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGS 126

Query: 125 YVRSG 129
            + + 
Sbjct: 127 TLSAV 131

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 1/119 (0%)

Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVV 201
             GK   + G G +G   A+    F   +          L+       V           
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81

Query: 202 ACPLTEETRHIINREVIDALGPKGVLINIG-RGPHVDERELVSALVEGRLGGAGLDVFE 259
               T     II     + +    ++ NIG     +D + L    VE       +D + 
Sbjct: 82  IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 9/105 (8%)

Query: 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNC 196
           +   +   I+G G +    A+        +   + T  P             V       
Sbjct: 9   QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET 68

Query: 197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
            +      +       +N+ V DA   + +  N+     VD  + 
Sbjct: 69  LLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKA 108

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 13/101 (12%), Positives = 22/101 (21%), Gaps = 9/101 (8%)

Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLT 206
           V IIG+G IG  + +               + P         + E      +  V     
Sbjct: 5   VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG-----VVRLDEFQVPSDVSTVVEC-- 57

Query: 207 EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247
                   +E    +    V   I       +         
Sbjct: 58  --ASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFS 96

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 21/137 (15%)

Query: 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVV- 201
           K   +IGLGR G ++ K        +      E+           +V+  A+  + L+  
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60

Query: 202 ------ACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGL 255
                    +        +      L    +     +  +    ++        L   G 
Sbjct: 61  GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKV--------LEKIGA 112

Query: 256 DVFENEPHVPEELFGLE 272
           D   +    PE+  G++
Sbjct: 113 DRIIH----PEKDMGVK 125

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 11/39 (28%), Positives = 14/39 (35%)

Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
           + GK V IIGLG  G++      A             P 
Sbjct: 3   YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.9
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.89
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.89
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.86
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.85
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.83
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.75
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.59
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.51
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.45
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.44
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.42
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.35
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.21
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.11
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.11
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.09
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.04
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.86
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.74
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.71
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.63
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.58
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.53
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.49
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.46
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.38
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.33
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.27
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.27
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.26
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.24
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.22
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.2
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.17
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.15
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.11
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.05
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.03
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.0
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.79
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.66
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.58
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.57
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.54
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.53
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.48
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.46
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.43
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.4
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.32
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.32
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.26
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.25
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.2
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.19
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.16
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.15
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.14
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.14
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.12
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.1
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.09
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.07
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.06
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.06
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.05
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.02
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.98
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.97
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.96
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.93
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.88
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.84
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.83
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.83
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.82
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.79
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.79
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.77
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.75
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.71
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.69
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.68
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.68
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.48
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.45
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.42
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.41
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.41
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.28
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.27
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.2
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.17
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.15
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.13
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.11
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.08
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.08
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.92
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.85
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.76
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.69
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	95.66
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.52
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.47
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.46
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.44
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.44
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.41
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.41
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.4
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.38
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.35
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.34
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.3
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.28
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.27
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.27
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.23
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.21
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.14
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.1
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.09
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.06
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.97
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.95
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.94
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.9
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.9
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.88
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.87
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.87
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.8
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.78
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.78
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.73
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.67
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.65
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.64
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.64
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.63
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.61
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.6
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.58
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.54
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.4
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	94.37
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.36
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.36
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.33
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.27
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.21
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.19
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.19
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.14
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.13
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.1
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.08
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.06
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.02
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.01
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.93
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.88
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.84
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.84
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.83
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.81
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.69
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.65
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.64
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.64
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.59
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.57
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.56
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.55
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.46
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.43
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.4
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.39
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.29
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	93.28
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.27
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.26
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.25
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.23
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.23
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.23
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.19
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.17
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.98
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	92.94
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.91
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.76
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.75
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.68
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.54
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.49
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.46
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.44
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.44
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.41
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.39
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.39
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.96
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.77
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.73
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.72
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.66
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.57
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.52
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.47
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.46
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.45
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.43
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.16
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.98
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.95
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.93
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.69
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.66
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.65
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.59
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	90.56
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.45
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.3
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.05
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.99
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.9
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.86
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	89.79
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.77
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.57
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.45
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.39
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.21
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	89.18
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.09
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.91
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.9
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.78
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	88.77
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	88.76
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.58
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.48
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.47
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.45
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.34
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.21
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.04
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.97
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.91
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.8
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.64
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.63
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.45
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	87.27
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.01
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.85
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	86.79
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.61
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.47
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	86.37
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.2
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.13
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.09
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.83
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.64
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.53
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	85.19
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.07
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.06
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	84.97
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	84.95
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.68
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.64
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.52
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	84.49
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.34
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	83.89
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.87
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.29
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.28
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.25
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	83.1
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	83.08
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.04
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	82.9
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.86
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	82.56
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.64
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.49
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.11
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.01
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.56
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	80.46
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	80.27
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.24

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1e-51  Score=354.66  Aligned_cols=181  Identities=35%  Similarity=0.562  Sum_probs=168.1

Q ss_pred             ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          100 LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       100 ~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      |+.+||||++++||++.|++.++++.++++.|.+..+ .+.++.|+++||+|+|.||+.+|+++++|||+|++||++..+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~-~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGC-CBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-ccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            6789999999999999999999999999999985443 477899999999999999999999999999999999998764


Q ss_pred             ccc---cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          180 NLK---YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       180 ~~~---~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                      ...   .....+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||++|
T Consensus        80 ~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lD  159 (184)
T d1ygya1          80 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLD  159 (184)
T ss_dssp             HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEES
T ss_pred             hHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEe
Confidence            322   12346899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccCCCceEEccCCC
Q 021388          257 VFENEPHVPEELFGLENVVLMPHVG  281 (313)
Q Consensus       257 V~~~Ep~~~~~L~~~pnv~lTPH~a  281 (313)
                      ||++||++++|||++|||++|||+|
T Consensus       160 V~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         160 VFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             CCCCCCCCCchHhcCCCEEECCCCC
Confidence            9999999878999999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=4.1e-50  Score=346.37  Aligned_cols=183  Identities=35%  Similarity=0.582  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC--cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD--YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~--~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..+|||||+++||+++|+++++++.+++|.|....  ...+.++.|+++||||+|+||+.+|+++++|||+|.+||+...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            46899999999999999999999999999996321  2357889999999999999999999999999999999998765


Q ss_pred             Ccc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE
Q 021388          179 PNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA  253 (313)
Q Consensus       179 ~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga  253 (313)
                      ...     ......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|++.||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            322     223467899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCcccCCCceEEccCCCCC
Q 021388          254 GLDVFENEPHVPEELFGLENVVLMPHVGSG  283 (313)
Q Consensus       254 ~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~  283 (313)
                      ++|||++||.+++|||++|||++|||+|+.
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999777799999999999999973

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=7.3e-50  Score=345.19  Aligned_cols=181  Identities=31%  Similarity=0.487  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC------cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecC
Q 021388          102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD------YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR  175 (313)
Q Consensus       102 ~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~  175 (313)
                      ++|||++++++|+++|+++..++.+++|.|.+..      ...+.+|.|+++||||+|+||+.+|+++++|||+|.+||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999997532      1247789999999999999999999999999999999999


Q ss_pred             CCCCcc----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          176 TEKPNL----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       176 ~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ......    +.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            765432    2345678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCC--CcccCCCceEEccCCCC
Q 021388          252 GAGLDVFENEPHVP--EELFGLENVVLMPHVGS  282 (313)
Q Consensus       252 ga~lDV~~~Ep~~~--~~L~~~pnv~lTPH~a~  282 (313)
                      ||++|||+.||++.  +||+++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999863  48999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=4.2e-50  Score=348.59  Aligned_cols=183  Identities=27%  Similarity=0.460  Sum_probs=166.4

Q ss_pred             hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388          101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN  180 (313)
Q Consensus       101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~  180 (313)
                      .++||||+++++|++.|++.++++.+++|.|.+.....+++|.|++|||||+|+||+.+|+++++|||+|++||++....
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            47899999999999999999999999999997433335789999999999999999999999999999999999976543


Q ss_pred             cc-cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          181 LK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       181 ~~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                      .. .....++++++++||+|++|+|+|++|+++|+++.|+.||+|+++||+|||++||++||+++|++|++.||++|||+
T Consensus        82 ~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~  161 (199)
T d1dxya1          82 DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  161 (199)
T ss_dssp             CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence            22 22356899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------C----CcccCCCceEEccCCCCC
Q 021388          260 NEPHV----------P----EELFGLENVVLMPHVGSG  283 (313)
Q Consensus       260 ~Ep~~----------~----~~L~~~pnv~lTPH~a~~  283 (313)
                      .||++          .    ++|+.+|||++|||+|||
T Consensus       162 ~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         162 YETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             THHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99962          1    368899999999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=3.1e-49  Score=340.42  Aligned_cols=180  Identities=26%  Similarity=0.502  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC-cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc
Q 021388          103 DVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL  181 (313)
Q Consensus       103 ~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~  181 (313)
                      +||||+++++|+++|++.++++.+++|.|.+.. ...+.++.|+++||||+|+||+.+|+++++|||+|.+||+......
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            799999999999999999999999999997322 1246789999999999999999999999999999999998764322


Q ss_pred             -----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388          182 -----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       182 -----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD  256 (313)
                           +.....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||++|
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lD  161 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD  161 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEES
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEe
Confidence                 234567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC-cccCCCceEEccCCCC
Q 021388          257 VFENEPHVPE-ELFGLENVVLMPHVGS  282 (313)
Q Consensus       257 V~~~Ep~~~~-~L~~~pnv~lTPH~a~  282 (313)
                      ||++||++.+ |||++||+++|||+||
T Consensus       162 V~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         162 VWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999998865 8999999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.8e-49  Score=337.92  Aligned_cols=182  Identities=31%  Similarity=0.468  Sum_probs=159.0

Q ss_pred             ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          100 LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       100 ~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      |+++||||+++++|++.|++++++..++.+.|.+... .+.++.|++|||||+|.||+.+|+++++|||+|++||+....
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~-~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAA-GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccccc-ccccccceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            6899999999999999999999999999999985443 467899999999999999999999999999999999987654


Q ss_pred             cc-ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388          180 NL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF  258 (313)
Q Consensus       180 ~~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~  258 (313)
                      .. ......+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||+++|+++|+++++.||++|||
T Consensus        80 ~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1          80 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             CCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             hhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            33 23345689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC-----CcccCCCceEEccCCCC
Q 021388          259 ENEPHVP-----EELFGLENVVLMPHVGS  282 (313)
Q Consensus       259 ~~Ep~~~-----~~L~~~pnv~lTPH~a~  282 (313)
                      ++||...     +||+++|||++|||+||
T Consensus       160 ~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         160 PTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             --------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999742     37999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2.8e-48  Score=332.11  Aligned_cols=179  Identities=27%  Similarity=0.430  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388          101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN  180 (313)
Q Consensus       101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~  180 (313)
                      |++||||+++++|+++|++..+++.+++|.|.+...  ..++.|++|||||+|.||+.+|+++++|||+|.+|||++...
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~--~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~   78 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG   78 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC--CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC--CCcccCceEEEeccccccccceeeeecccccccccccccccc
Confidence            689999999999999999999999999999975332  346999999999999999999999999999999999987643


Q ss_pred             cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       181 ~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                      . .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||+++|+++|+++++.+|++|||+.
T Consensus        79 ~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~  157 (181)
T d1qp8a1          79 P-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG  157 (181)
T ss_dssp             S-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             c-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCC
Confidence            3 234568999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC-CCCC-cccCCCceEEccCCCC
Q 021388          261 EP-HVPE-ELFGLENVVLMPHVGS  282 (313)
Q Consensus       261 Ep-~~~~-~L~~~pnv~lTPH~a~  282 (313)
                      || ++.+ ||+.+|||++|||+||
T Consensus       158 e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         158 RNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCChHHcCCCEEeccccCc
Confidence            65 4444 8999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.2e-48  Score=338.52  Aligned_cols=180  Identities=24%  Similarity=0.398  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc
Q 021388          102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL  181 (313)
Q Consensus       102 ~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~  181 (313)
                      ++||||+++++|+++|++...++.+++|.|.... ..+++|+|++|||||+|+||+.+|+++++|||+|++||+......
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~-~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~   80 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL   80 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT-CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCC-CcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc
Confidence            6899999999999999999999999999776433 257899999999999999999999999999999999998765322


Q ss_pred             c--cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388          182 K--YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE  259 (313)
Q Consensus       182 ~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~  259 (313)
                      .  .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||+++|+++|++|++.||++|||+
T Consensus        81 ~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~  160 (197)
T d1j4aa1          81 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  160 (197)
T ss_dssp             HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence            1  23456899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--------------CcccCCCceEEccCCCC
Q 021388          260 NEPHVP--------------EELFGLENVVLMPHVGS  282 (313)
Q Consensus       260 ~Ep~~~--------------~~L~~~pnv~lTPH~a~  282 (313)
                      .||...              ++||++|||++|||+|+
T Consensus       161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            997421              25899999999999986

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.9e-27  Score=191.72  Aligned_cols=128  Identities=27%  Similarity=0.271  Sum_probs=113.3

Q ss_pred             CceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388            2 ESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV   81 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      ++||||+++++.+...+.|++.|++... +.++.+ ++.+.++++|+++++..+++++++++++|+||+|++.|+|+|||
T Consensus         1 sMpkvli~~~~~~~~~~~L~~~~~v~~~-~~~~~~-el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~I   78 (130)
T d1ygya2           1 SLPVVLIADKLAPSTVAALGDQVEVRWV-DGPDRD-KLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNV   78 (130)
T ss_dssp             CCCEEEECSSCCGGGGTTSCSSSEEEEC-CTTSHH-HHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CCCEEEEECCCCHHHHHHHhCCcEEEEC-CCCCHH-HHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeecccccch
Confidence            4789999999999988999999976654 334444 45667889999999888899999999999999999999999999


Q ss_pred             ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCC
Q 021388           82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKW  131 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w  131 (313)
                      |+++|+++||.|+|+||+++.+||||++++||++.|++..+++++|+|.|
T Consensus        79 Dl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          79 DVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             CHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             hHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            99999999999999999999999999999999999999887777777666

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9e-24  Score=170.22  Aligned_cols=118  Identities=17%  Similarity=0.188  Sum_probs=99.8

Q ss_pred             CceEEEEeCCCChhHHHHHHhcCc-EEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388            2 ESIGVLMACPMNTYLEQELERRFN-LFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK   80 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +|||||+++++++...+.|++.+. .+.+.....+++++.+.+.++|++++++..++++++++++|+||+|+++|+|+||
T Consensus         3 ~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG~D~   82 (132)
T d1sc6a2           3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQ   82 (132)
T ss_dssp             SSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecccccc
Confidence            479999999999999999998843 3444333345666778889999999877889999999999999999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhch
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL  119 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~  119 (313)
                      ||+++|+++||+|+|+||+++.+|||++++||++..|++
T Consensus        83 IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          83 VDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             BCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999999998766665444333

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.89  E-value=3.2e-23  Score=166.43  Aligned_cols=115  Identities=18%  Similarity=0.332  Sum_probs=99.9

Q ss_pred             ceEEEEeCCCChhHHHHHHhcCcEEEeecC-CChHHHHHhccCCceEEEEeCCCCCCHHHHhhCC-CccEEEEcCcCCCc
Q 021388            3 SIGVLMACPMNTYLEQELERRFNLFKFWTV-SDKTQFLKAQQNNIRAVVGNATAGADAELIDALP-KLEIVSSFSVGLDK   80 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~   80 (313)
                      |||||++.++.+...+.+++.|++..++.. +.+.+++.+.++++|++++++..++++++++++| +||+|++.|+|+||
T Consensus         1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~   80 (129)
T d1gdha2           1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH   80 (129)
T ss_dssp             CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence            799999999999999999999987665432 3356667777889999998888899999999997 79999999999999


Q ss_pred             CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHh
Q 021388           81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR  117 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r  117 (313)
                      ||+++|+++||+|+|+||+++.+|||+|+++|+.+.+
T Consensus        81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999976665555544

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.89  E-value=1.4e-25  Score=178.29  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=107.5

Q ss_pred             eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388            4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |+|+++.++.++..+.+++.|.++...           .++++|+++++   +++++.++++|+||||++.|+|+||+|+
T Consensus         1 Mki~v~~~lp~e~~e~L~~~~~v~~~~-----------d~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPPEAEEELRKYFKIVRGG-----------DLGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCHHHHHHHHTTCEEECSS-----------CCTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCHHHHHHhhhcceEeecc-----------cccccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            689999999999999999998765321           14678888874   5899999999999999999999999999


Q ss_pred             hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388           84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l  163 (313)
                      +.+ ++||.|+|++|+++.+||||+++++|++.|+                            ++|+|+|.||+.+|+++
T Consensus        67 ~~~-~~~i~v~n~~g~~~~~vae~~~~~il~~~r~----------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESI-PPHVTVAGNAGSNGYGNERVWRQMVMEAVRN----------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTS-CTTSCEECCCSSSSSSCHHHHHHHHHHHHHH----------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHh-ccCeEEEECCCCChHHHHHHHHHHHHHhcCC----------------------------EEEEcCCHHHHHHHHHH
Confidence            988 4699999999999999999999999999874                            47999999999999999


Q ss_pred             HhCC
Q 021388          164 EAFS  167 (313)
Q Consensus       164 ~~~G  167 (313)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9997

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.86  E-value=2.7e-22  Score=161.38  Aligned_cols=118  Identities=13%  Similarity=0.178  Sum_probs=92.9

Q ss_pred             eEEEEeCCC--ChhHHHHHHhcCcE-EEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCC--CccEEEEcCcCC
Q 021388            4 IGVLMACPM--NTYLEQELERRFNL-FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVSSFSVGL   78 (313)
Q Consensus         4 ~~vl~~~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~   78 (313)
                      |||++.+..  .....+.+.+.+.+ +.+.+....++ ..+.++++|+|++....++++++++++|  +||+|++.|+|+
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~   79 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDEN-TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGT   79 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTT-GGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHH-HHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEccccc
Confidence            578886532  23344556554332 32333322333 3456789999998888899999999876  799999999999


Q ss_pred             CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHH
Q 021388           79 DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCES  122 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~  122 (313)
                      ||||+++|+++||+|+|+|++++++||||+++++|++.|++...
T Consensus        80 d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          80 DNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             TTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            99999999999999999999999999999999999999998754

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.85  E-value=6.7e-22  Score=159.00  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=98.4

Q ss_pred             eEEEEeCCCChhH-HHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388            4 IGVLMACPMNTYL-EQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD   82 (313)
Q Consensus         4 ~~vl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      |+|++.|...... ++.|++..++. +.+....+|..++.+.+++++++++..++++++++++|+||+|++.|+|+||||
T Consensus         2 P~v~~ld~~d~~~e~~~L~~~~~v~-~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~iD   80 (133)
T d1mx3a2           2 PLVALLDGRDCTVEMPILKDVATVA-FCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNID   80 (133)
T ss_dssp             CEEEESSCSCCTTTHHHHTTTCEEE-ECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBC
T ss_pred             CEEEEecCCcchhhHHHhcccceEE-EecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccEe
Confidence            6788878654322 45566655544 444445555555556678888888888999999999999999999999999999


Q ss_pred             hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCC
Q 021388           83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK  132 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~  132 (313)
                      +++|+++||.|+|+||+++ ++|||+++++|++.|++++..    +|.|.
T Consensus        81 ~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~  125 (133)
T d1mx3a2          81 IKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRIP  125 (133)
T ss_dssp             HHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTT
T ss_pred             eeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hcccc
Confidence            9999999999999999987 579999999999999998654    45554

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.83  E-value=1.8e-21  Score=162.61  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=99.1

Q ss_pred             HHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeC--CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcE
Q 021388           16 LEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNA--TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVR   92 (313)
Q Consensus        16 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~   92 (313)
                      +.+.|+++ ++++...+.+...+++.+++.++|++++++  ...+++++|+++|+||+|++.|+|+||||+++|+++||.
T Consensus        59 lr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~  138 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVT  138 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCE
T ss_pred             HHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCE
Confidence            46778887 455555454455566778899999999974  567999999999999999999999999999999999999


Q ss_pred             EEcCCCCChHHHHHHH--------HHHHHHHHhchhHHHHHHhcCCC
Q 021388           93 VTNTPDVLTDDVADLA--------IGLMLAVLRRLCESDRYVRSGKW  131 (313)
Q Consensus        93 v~n~~~~~~~~vAE~a--------l~~~L~~~r~~~~~~~~~~~~~w  131 (313)
                      |+|+||+|+.+||||+        +++++...|++...+..+++|.|
T Consensus       139 V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         139 VAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            9999999999999999        77888888998877766777766

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.75  E-value=9e-19  Score=141.04  Aligned_cols=113  Identities=20%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             EEEEeCCCCh--hHHHHH-HhcCcE-EEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCC--CccEEEEcCcCC
Q 021388            5 GVLMACPMNT--YLEQEL-ERRFNL-FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVSSFSVGL   78 (313)
Q Consensus         5 ~vl~~~~~~~--~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~   78 (313)
                      ||++-.....  ...+++ .+.+++ +...+.+.+++ ..+.++++|+|+++...+++++++++++  +||+|++.|+|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e-~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~   80 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPE-TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGV   80 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTT-TGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHH-HHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCc
Confidence            5666332221  233344 444443 33333333444 4567889999999888899999999765  699999999999


Q ss_pred             CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhH
Q 021388           79 DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCE  121 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~  121 (313)
                      ||||+++|.++||.|+|+|++   +|||||+++||+++|++..
T Consensus        81 d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          81 DNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             TTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999987   5899999999999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.2e-16  Score=126.79  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=89.1

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----cccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----YKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      +..|.||+++|+|||.+|+.+|+++++||++|+++|+.+.....    .....++++++..+|+++++..    ++++|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTG----n~~vI~   94 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTG----CIDIIL   94 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSS----CSCSBC
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCC----Cccchh
Confidence            34699999999999999999999999999999999998754322    1224579999999999988765    778999


Q ss_pred             HHHHhccCCCcEEEEcC-CCccccHHHHHHHHHhC
Q 021388          215 REVIDALGPKGVLINIG-RGPHVDERELVSALVEG  248 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~-rg~~vd~~al~~al~~~  248 (313)
                      .+.|+.||+|+++.|++ +..-+|.++|.+...+.
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~  129 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEK  129 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEE
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhhcccee
Confidence            99999999999999997 56669999988754433

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.59  E-value=1.1e-15  Score=126.18  Aligned_cols=111  Identities=21%  Similarity=0.340  Sum_probs=97.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--CHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--NREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~~~  217 (313)
                      ++|||||+|.||+++|++|...|++|.+|||+++..     .+.....+.+|+++++|+|++|+|..++.+.++  ....
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            479999999999999999999999999999987642     234456789999999999999999988888876  2458


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      +..+++|.++||+++...-....+.+.+.+.++.  .+|.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            8899999999999999999999999999999887  6665

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=1.7e-14  Score=119.06  Aligned_cols=111  Identities=15%  Similarity=0.249  Sum_probs=96.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhccc--CHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHII--NREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~~~  217 (313)
                      ++|||||+|.||.++|++|...|++|.+|||+++...     +.....++.|++.++|+|++++|..+..+.++  ....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            5899999999999999999999999999999876422     33446789999999999999999888877665  3457


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      +..+++|.++||++....-+...+.+.+++..+.  .+|+
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            8889999999999999999999999999999887  7776

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.45  E-value=3.8e-13  Score=110.77  Aligned_cols=144  Identities=19%  Similarity=0.234  Sum_probs=95.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc-ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KY-KYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ++|||||+|.||.++|+.|+..|++|++|||+++...     +. ....+..+.+++||+|++++|. ..+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            5799999999999999999999999999999865311     11 1122344678999999999994 3566666 6688


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCC-CCCC-CcccCCCceEEccCCCCCcHHHHHHHH
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE-PHVP-EELFGLENVVLMPHVGSGTVETRKTMA  292 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~E-p~~~-~~L~~~pnv~lTPH~a~~t~~~~~~~~  292 (313)
                      ..+++++++++++.......... ..+...-+..-.+...+.. |... ..|+....+++||+-++. .+..+.+.
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~-~~~~~~v~  152 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQLACLR  152 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHHHHHHH
T ss_pred             hhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC-HHHHHHHH
Confidence            88999999999987654433333 3344433332222221111 1111 247778889999986644 44444333

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.44  E-value=9.6e-14  Score=115.98  Aligned_cols=110  Identities=12%  Similarity=0.137  Sum_probs=93.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------ccccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------KYKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ++|||||+|.||.+||++|...|++|.+|||++++..             ++....++.+.+..+|.+++++|..+.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            5799999999999999999999999999999876321             112233455678899999999999888887


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ++ .+++..+++|.++||+++..+-+...+.+.+.+..+.  .+|.
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            65 6789999999999999999999999999999999887  6775

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.42  E-value=1.5e-13  Score=112.32  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=84.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      ..+.||++.|+|||.+|+.+|++++++|++|++++..|-...     +++ ..+++++++.+|+++.++.    .+++|+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~-v~~~~~a~~~aDi~vTaTG----n~~vI~   93 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCTG----NVDVIK   93 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCc-cCchhHccccCcEEEEcCC----CCcccc
Confidence            358999999999999999999999999999999998875322     333 4689999999999999887    566899


Q ss_pred             HHHHhccCCCcEEEEcCCCcc-ccHHHHHH
Q 021388          215 REVIDALGPKGVLINIGRGPH-VDERELVS  243 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~-vd~~al~~  243 (313)
                      .+.|..||+|+++-|+|.... +|-++|.+
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            999999999999999998765 66666553

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.35  E-value=7.6e-12  Score=103.15  Aligned_cols=145  Identities=17%  Similarity=0.192  Sum_probs=101.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCcc-----cc--ccCCCHHH-HhhcCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNL-----KY--KYYPSVVE-LASNCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~e-~~~~aDvV~~~lp~~~~t~~li~  214 (313)
                      |+|+|||+|.||.++|+.|+..|+  +|++||++++...     +.  ....+.++ ....+|+|++|+|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            579999999999999999998886  6899999875321     11  12233333 34589999999993 2344455 


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCC-CCCC-CcccCCCceEEccCCCCCcHHHHHHHH
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE-PHVP-EELFGLENVVLMPHVGSGTVETRKTMA  292 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~E-p~~~-~~L~~~pnv~lTPH~a~~t~~~~~~~~  292 (313)
                      +++...+++++++++++.....-.+++.+.+...-+.+--+...+.. |... ..|++-.++++|||-.. ..+..+.+.
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~~~v~  158 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLKLVK  158 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHHHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHHHHHH
Confidence            56778899999999999987777777877777655555454443322 2222 35888999999998663 444444433

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=5.9e-12  Score=102.80  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=86.5

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhcc
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL  221 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~m  221 (313)
                      +|||||+|.||..||++|...|+.+ +|+++..+...    .....+..+.+.++|++++++|..++..... ...+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            6999999999999999999888755 56666543211    1112233466678999999999887776554 6788999


Q ss_pred             CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       222 k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      +++.++||+++...-....+.+.+++.++.  .+|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999999988  7776

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.11  E-value=6.1e-11  Score=96.14  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVID  219 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~  219 (313)
                      ++|||||+|+||+.+|++|...|++|.+|++......     +.....+.+|+++++|+|++|+|...... ++ .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            4899999999999999999999999999998765322     22335678899999999999999654332 22 22233


Q ss_pred             ccCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          220 ALGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                        ..+.++|+++.......+.+.+.+++.+
T Consensus        79 --~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 --HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             --TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             --cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence              2468999999999888899988886653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.11  E-value=5.1e-11  Score=98.96  Aligned_cols=110  Identities=16%  Similarity=0.239  Sum_probs=88.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c--------cccCCCHHH---HhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K--------YKYYPSVVE---LASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~--------~~~~~~l~e---~~~~aDvV~~~lp~~~~  208 (313)
                      ++|||||+|.||..+|++|...|++|++|||++++..     +        .....+.++   .+..++.+..+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5799999999999999999999999999999875321     1        111233333   45688899999987777


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      ....+ ......+++|.++||+++...-+...+.+.+.+..+.  .+|.
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~lda  127 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLGM  127 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEEE
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhccee--Eecc
Confidence            66666 5678889999999999999999999999999999887  5554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.09  E-value=3.3e-10  Score=91.54  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      ..-++|+||| +|.||+.+|++|+..|++|.+||++...        ..++.+..+|++++++|... +.. +-.+.+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~-v~~~~~~~   76 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------VAESILANADVVIVSVPINL-TLE-TIERLKPY   76 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------GHHHHHTTCSEEEECSCGGG-HHH-HHHHHGGG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc--------ccchhhhhccccccccchhh-hee-eeeccccc
Confidence            4557999999 9999999999999999999999987642        34577899999999999443 333 34778899


Q ss_pred             cCCCcEEEEcCCCccccHHHHHHHH
Q 021388          221 LGPKGVLINIGRGPHVDERELVSAL  245 (313)
Q Consensus       221 mk~ga~lIn~~rg~~vd~~al~~al  245 (313)
                      ++++++++|++.-...-.+++.+.+
T Consensus        77 ~~~~~iiiD~~Svk~~~~~~~~~~~  101 (152)
T d2pv7a2          77 LTENMLLADLTSVKREPLAKMLEVH  101 (152)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHHC
T ss_pred             ccCCceEEEecccCHHHHHHHHHHc
Confidence            9999999999986654455554443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.04  E-value=3.5e-10  Score=91.74  Aligned_cols=96  Identities=18%  Similarity=0.305  Sum_probs=78.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      ++|||||+|+||+++++.|...|.++.+|+|+.++.      .+.....+.++++++||+|+++++  |+.   + .+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~---~-~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL---F-ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG---H-HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh---H-HHHh
Confidence            579999999999999999999999999999886532      134556789999999999999996  432   1 5677


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEG  248 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~  248 (313)
                      +.++++..+|++.-|  +..+.|.+.+..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            889999999999877  5677788877543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.86  E-value=4.9e-09  Score=86.32  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c---------------cccCCCHHHHhhcCCEEEEec
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K---------------YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~---------------~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .|||+|||.|.||..+|..|...|++|.+|+|+++...     +               .....++.|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            48999999999999999999999999999999754211     0               011357899999999999999


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      |.. ....++ +++...++++.+++- .-|....+..+.+.++....
T Consensus        81 ~~~-~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          81 PAI-HHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CGG-GHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTTC
T ss_pred             chh-HHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhcC
Confidence            844 344443 667788999998774 44554556666777766543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.74  E-value=6.2e-09  Score=85.05  Aligned_cols=91  Identities=12%  Similarity=0.211  Sum_probs=73.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--------c----ccCCCHHHHhhcCCEEEEecCC-Chh
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--------Y----KYYPSVVELASNCHILVVACPL-TEE  208 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--------~----~~~~~l~e~~~~aDvV~~~lp~-~~~  208 (313)
                      +.-.++.|||.|..|...++.++++|.+|.++|.+.+....        .    .....+++.+++||+|+.++-. ...
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            56789999999999999999999999999999988653221        0    1122477889999999988632 234


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ...+|.++.++.||||+++||++-
T Consensus       110 aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCeeecHHHHhhcCCCcEEEEeec
Confidence            677999999999999999999863

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=1.4e-09  Score=87.72  Aligned_cols=84  Identities=12%  Similarity=-0.009  Sum_probs=58.0

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhcc
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL  221 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~m  221 (313)
                      |||||+|+||+.+++.|+.-+..+.+|+|++++..     +.....+.+++++++|+|++|+|... .     .+.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~-i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh-h-----hHHHhhh
Confidence            79999999999999999874444568999876422     22335578889999999999999532 2     3455556


Q ss_pred             -CCCcEEEEcCCCccc
Q 021388          222 -GPKGVLINIGRGPHV  236 (313)
Q Consensus       222 -k~ga~lIn~~rg~~v  236 (313)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999987554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.63  E-value=2.6e-08  Score=80.21  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      ++|||||+|+||+++++.|...| .+|.+|||+++..      .+.....+.++ ++++|+|+++++  |+..    .+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~~----~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQDM----EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHHH----HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHHH----HHh
Confidence            58999999999999999887666 7899999987632      12333444444 567999999997  4321    233


Q ss_pred             HhccC-CCcEEEEcCCCccccHHHHHHHHHh-CCeeE
Q 021388          218 IDALG-PKGVLINIGRGPHVDERELVSALVE-GRLGG  252 (313)
Q Consensus       218 l~~mk-~ga~lIn~~rg~~vd~~al~~al~~-~~l~g  252 (313)
                      ++.++ .+.++|++.-|-  ..+.+.+.+.. .++..
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir  108 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVR  108 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEE
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhCcCcceEe
Confidence            44443 478899888874  56677777743 34443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.58  E-value=7.9e-08  Score=79.41  Aligned_cols=89  Identities=16%  Similarity=0.261  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc-----------------------------CC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY-----------------------------YP  187 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~-----------------------------~~  187 (313)
                      +.--++.|||.|..|...++.++++|++|.++|.+.....     +..+                             ..
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            5667999999999999999999999999999998765321     1000                             01


Q ss_pred             CHHHHhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          188 SVVELASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       188 ~l~e~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .+.+.++++|+|+.++  |.. ....+|+++.++.||||+++||++
T Consensus       107 ~l~~~l~~aDlVI~talipG~-~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCCc-ccceeehHHHHHhcCCCcEEEEEe
Confidence            1345588999999775  433 356689999999999999999986

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.58  E-value=3.4e-08  Score=80.64  Aligned_cols=86  Identities=20%  Similarity=0.216  Sum_probs=69.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      |++|+|+|||||+-|++=|.+|+..|++|.+--|...+      ..++. ..+++|.++++|+|.+.+|+.. -..++.+
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~-v~~~~eA~~~aDiim~L~PD~~-q~~vy~~   91 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK-VADVKTAVAAADVVMILTPDEF-QGRLYKE   91 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE-EECHHHHHHTCSEEEECSCHHH-HHHHHHH
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc-cccHHHHhhhcCeeeeecchHH-HHHHHHH
Confidence            78999999999999999999999999999876665432      12333 3579999999999999999443 3456677


Q ss_pred             HHHhccCCCcEEEE
Q 021388          216 EVIDALGPKGVLIN  229 (313)
Q Consensus       216 ~~l~~mk~ga~lIn  229 (313)
                      +....||+|+.+.=
T Consensus        92 ~I~p~lk~g~~L~F  105 (182)
T d1np3a2          92 EIEPNLKKGATLAF  105 (182)
T ss_dssp             HTGGGCCTTCEEEE
T ss_pred             hhhhhcCCCcEEEE
Confidence            89999999998753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.53  E-value=3.8e-07  Score=76.65  Aligned_cols=141  Identities=13%  Similarity=0.070  Sum_probs=94.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aDvV  199 (313)
                      ++|+|||+|.+|.++|..+...|++|++||.+.+..            .+             .....++++.+..||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            579999999999999999999999999999865310            00             12346788999999999


Q ss_pred             EEecCCChhhh---------cccC--HHHHhccCCCcEEEEcCCCccccHHHHHHHHHh---CCeeEEEec---CCCCCC
Q 021388          200 VVACPLTEETR---------HIIN--REVIDALGPKGVLINIGRGPHVDERELVSALVE---GRLGGAGLD---VFENEP  262 (313)
Q Consensus       200 ~~~lp~~~~t~---------~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~---~~l~ga~lD---V~~~Ep  262 (313)
                      ++|+|......         .++.  ...+...+++.++|.-|+..+-..+.++..+-+   +...  ..|   +|.+|-
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~--~~~~~~~~~PE~  158 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKA--GVDFGVGTNPEF  158 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCB--TTTBEEEECCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccc--cccccchhhhhh
Confidence            99998531111         1111  234556778999999999888777776554422   2211  222   266776


Q ss_pred             CCCC----cccCCCceEEccCCCCCcHHHHHHH
Q 021388          263 HVPE----ELFGLENVVLMPHVGSGTVETRKTM  291 (313)
Q Consensus       263 ~~~~----~L~~~pnv~lTPH~a~~t~~~~~~~  291 (313)
                      +.+.    .+...|++++    |+.+.++.+.+
T Consensus       159 ~~~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         159 LRESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             CCTTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             hcccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            6543    4677788776    44555555444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.49  E-value=1.6e-07  Score=76.34  Aligned_cols=90  Identities=19%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCcc------c--cccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNL------K--YKYYPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      .+.++++.|||.|.||+.+++.|...|++ +.+++|+.++..      +  .....++.+.+.++|+|+.|++.   ...
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence            48899999999999999999999999995 999999865322      1  12345777888999999999863   344


Q ss_pred             ccCHHHHhcc------CCCcEEEEcCCC
Q 021388          212 IINREVIDAL------GPKGVLINIGRG  233 (313)
Q Consensus       212 li~~~~l~~m------k~ga~lIn~~rg  233 (313)
                      +|+.+.++..      ++..++||.+..
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            6676665421      123466665533

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.8e-07  Score=75.38  Aligned_cols=87  Identities=11%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc------------ccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY------------KYYPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~------------~~~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      ++|+|||.|.||..+|..|...|++|..++|.+......            ....+..+.+..+|+|+++++. .++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            589999999999999999999999999999987643210            1123445677899999999984 345544


Q ss_pred             cCHHHHhccCCCcEEEEcCCC
Q 021388          213 INREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg  233 (313)
                      + +.....+++++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 5566777889999888776

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.2e-06  Score=73.06  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c------------------cccCCCHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K------------------YKYYPSVV  190 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  190 (313)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                +                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999999874210                0                  01235678


Q ss_pred             HHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       191 e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      +.+++||+|+=++|.+.+.+.-+-+++-+.++++++|...+.+  .....+.+.+.
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~  138 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATT  138 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhcc
Confidence            8899999999999988887766656677778899888655443  33445555554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.33  E-value=3.3e-07  Score=75.71  Aligned_cols=88  Identities=13%  Similarity=0.228  Sum_probs=63.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-------------cc-------cccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-------------LK-------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------------~~-------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ++|+|||.|.+|.++|..|...|.+|..|.|..++.             ..       .....+++++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            589999999999999999999999999998743210             00       1124678899999999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGPH  235 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~  235 (313)
                      . ...+.++ ++....+++. .+|.++.|..
T Consensus        81 s-~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          81 T-DGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             G-GGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             h-hhhHHHH-Hhhccccccc-eecccccCcc
Confidence            3 3344444 4566667665 5555666653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.27  E-value=2.8e-07  Score=76.83  Aligned_cols=90  Identities=13%  Similarity=0.146  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-------------cc------cccCCCHHHHhhcCCEEEEec
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-------------LK------YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .-++|+|||.|.+|.++|..|...|.+|..|+|+++..             .+      .....+++++++++|+|++++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            33579999999999999999999999999999865310             01      123467899999999999999


Q ss_pred             CCChhhhcccCH---HH-HhccCCCcEEEEcCCC
Q 021388          204 PLTEETRHIINR---EV-IDALGPKGVLINIGRG  233 (313)
Q Consensus       204 p~~~~t~~li~~---~~-l~~mk~ga~lIn~~rg  233 (313)
                      |. ...+.++.+   .. ....+++..+|+++.|
T Consensus        86 Ps-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          86 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             cH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            93 223333211   00 1123567789998877

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.27  E-value=2.7e-06  Score=71.39  Aligned_cols=103  Identities=18%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhh-cCCEEEEecCCChhhhcccC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELAS-NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li~  214 (313)
                      +|.|++|+|-|+|++|+.+|+.|..+|++|+++|.+.....     +.. ..+.++++. +||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~-~~~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc-ccCccccccccceeeeccc-----cccccc
Confidence            59999999999999999999999999999999998654211     122 234566654 799887654     456799


Q ss_pred             HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ++..+.++ -.+++-.+.+.+.+++ ..+.|+++.+.
T Consensus        98 ~~~a~~i~-ak~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLD-CSVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHHhhhh-hheeeccCCCCcchhh-HHHHhcccceE
Confidence            99999996 4566777777766654 45778887776

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.26  E-value=3.8e-07  Score=69.51  Aligned_cols=89  Identities=16%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------ccc---cCCCHHHHhhcCCEEEEecCCC
Q 021388          137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------KYK---YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------~~~---~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      |..-+++|+++.|||.|.+|..-|+.|..+|++|+++++...+..       ...   ...+ ++.+..+++|+.+....
T Consensus         5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~d~   83 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATDDD   83 (113)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCSCH
T ss_pred             ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCCCH
Confidence            455689999999999999999999999999999999988665321       111   1111 24567889887765422


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcC
Q 021388          207 EETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                           .+|++....+|+..++||+.
T Consensus        84 -----~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          84 -----TVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             -----HHHHHHHHHHHHTTCEEEET
T ss_pred             -----HHHHHHHHHHHHcCCEEEeC
Confidence                 34667778888889999975

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.24  E-value=8.8e-06  Score=67.43  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=101.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----------------------ccccCCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----------------------KYKYYPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----------------------~~~~~~~l~e~~~~aDvV~~  201 (313)
                      ++|+|||+|.+|..+|..+ +.|++|++||.+++...                       ......+..+...++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            5899999999999999877 46999999998764210                       01112345566789999999


Q ss_pred             ecCCChhhhc-ccC-------HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC----ccc
Q 021388          202 ACPLTEETRH-IIN-------REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE----ELF  269 (313)
Q Consensus       202 ~lp~~~~t~~-li~-------~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~----~L~  269 (313)
                      ++|....... ...       .+.+...+++.++|--+.-.+-..+.+..-+.+.++.      +.+|-+.+.    .+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9996544222 111       1223345788899999998888888888888887764      567876553    467


Q ss_pred             CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021388          270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFL  304 (313)
Q Consensus       270 ~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~  304 (313)
                      ..|++++--+-.. + .......+.+.+.+.+...
T Consensus       154 ~p~riv~G~~~~~-~-~~~~~~~~~~~~l~~~~~~  186 (196)
T d1dlja2         154 YPSRIIVSCEEND-S-PKVKADAEKFALLLKSAAK  186 (196)
T ss_dssp             SCSCEEEECCTTS-C-HHHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCHhh-H-HHHHHHHHHHHHHHHhhhc
Confidence            7788877654322 2 2233455556666666543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.22  E-value=5.9e-07  Score=74.61  Aligned_cols=99  Identities=18%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN  195 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~  195 (313)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                +             .....+. +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            5799999999999999999999999999999865211                0             0001122 34689


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV  246 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~  246 (313)
                      +|+|+-++|.+.+.+.-+-+++-+.++++++|...+.+-  ....|.+.+.
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~  132 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALK  132 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCS
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhcc
Confidence            999999999988888766677778889999987665553  4455666554

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.20  E-value=9.7e-07  Score=74.30  Aligned_cols=86  Identities=17%  Similarity=0.259  Sum_probs=63.8

Q ss_pred             cCC-CEEEEEcCChHHHHHHHHHHhC------CCCEEEecCCC-CC-----cccccc----CCCHHHHhhcCCEEEEecC
Q 021388          142 FTG-KTVGIIGLGRIGMAVAKRAEAF------SCPINYYSRTE-KP-----NLKYKY----YPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g-~~igiiG~G~iG~~iA~~l~~~------G~~V~~~~~~~-~~-----~~~~~~----~~~l~e~~~~aDvV~~~lp  204 (313)
                      +.| |+|+|||||+.|++-|..|+..      |..|.+-=|.. ..     ..++..    ..+.+|.+++||+|++.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            688 8999999999999999999984      45665443322 21     223321    3368899999999999999


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEE
Q 021388          205 LTEETRHIINREVIDALGPKGVLIN  229 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn  229 (313)
                      +..+. .++ ++..+.||+|+.+.=
T Consensus       121 De~Q~-~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 DSAQA-DNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHHH-HHH-HHHHHHSCTTCEEEE
T ss_pred             hHHHH-HHH-HHHHHhcCCCceeee
Confidence            65443 355 578999999998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.7e-06  Score=63.43  Aligned_cols=62  Identities=21%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc------ccc-C-CCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK------YKY-Y-PSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~------~~~-~-~~l~e~~~~aDvV~~~  202 (313)
                      +++||+|.|+|+|..|+++|+.|...|++|+++|.+......      ... . ..-++.+.+.|+|+++
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            478999999999999999999999999999999976553221      110 1 1124566788888775

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=4e-06  Score=67.96  Aligned_cols=131  Identities=16%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.++.||++.|||-+. +|++++..|...|++|+.++...         .++.+.+++||+|+.++..    .+++..+ 
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------~~l~~~~~~ADivI~a~G~----p~~i~~~-   97 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGD-   97 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTT-
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------chhHHHHhhhhHhhhhccC----ccccccc-
Confidence            4569999999999998 89999999999999999887543         2678889999999999873    3567654 


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG  297 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~  297 (313)
                        .+|+|+++||+|--.+.          ++++   .-||-..+      ..+ ---.+||=-||--.-+..-+.+..++
T Consensus        98 --~vk~g~vvIDvGi~~~~----------~~~~---~Gdvd~~~------v~~-~a~~~TPvPGGVGP~Tva~L~~N~v~  155 (166)
T d1b0aa1          98 --WIKEGAIVIDVGINRLE----------NGKV---VGDVVFED------AAK-RASYITPVPGGVGPMTVATLIENTLQ  155 (166)
T ss_dssp             --TSCTTCEEEECCCEECT----------TSCE---ECSBCHHH------HHH-HCSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             --ccCCCcEEEecCceecC----------CCCE---EeccccHh------HHh-heeEeCCCCCcccHHHHHHHHHHHHH
Confidence              46899999999865432          2443   33442111      100 11278998888765555555555555


Q ss_pred             HHHHHHcC
Q 021388          298 NLEAHFLN  305 (313)
Q Consensus       298 nl~~~~~g  305 (313)
                      .-+++.+.
T Consensus       156 a~~~~~~~  163 (166)
T d1b0aa1         156 ACVEYHDP  163 (166)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHhCc
Confidence            55555543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.3e-06  Score=66.40  Aligned_cols=135  Identities=15%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      +.+++||++.|||-+. +|+++|..|...|++|..++...         .++.+.++++|+++.+++.    .+++..+ 
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------~~l~~~~~~aDivi~a~G~----~~~i~~~-   99 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATGQ----PEMVKGE-   99 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGG-
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------ccHHHHHhhccchhhcccc----ccccccc-
Confidence            4579999999999987 89999999999999999988643         2577889999999999873    3556554 


Q ss_pred             HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388          218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG  297 (313)
Q Consensus       218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~  297 (313)
                        ..|+|+++||++--.+.|.+..    ..+++.   =||-.      +...+. --.+||--||--.-+..-+.+..++
T Consensus       100 --~vk~g~iviDvgi~~~~~~~~~----~~~~~~---gdvd~------~~v~~~-a~~~TPvPGGVGp~Tva~L~~N~v~  163 (170)
T d1a4ia1         100 --WIKPGAIVIDCGINYVPDDKKP----NGRKVV---GDVAY------DEAKER-ASFITPVPGGVGPMTVAMLMQSTVE  163 (170)
T ss_dssp             --GSCTTCEEEECCCBC--------------CCB---CSBCH------HHHTTT-CSEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             --cccCCCeEeccCcccccccccC----CCCEEe---cccch------Hhhhhh-ceEeCCCCCchhHHHHHHHHHHHHH
Confidence              4689999999987655443221    222332   23321      011111 2258997666554444444444444


Q ss_pred             HHHHHH
Q 021388          298 NLEAHF  303 (313)
Q Consensus       298 nl~~~~  303 (313)
                      --++|+
T Consensus       164 a~~r~l  169 (170)
T d1a4ia1         164 SAKRFL  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            445554

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=5.7e-06  Score=67.51  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=65.6

Q ss_pred             cccccCCCEEEEEcCChH-HHHHHHHHHhCCCCEEEecCCCCCc----ccc------------ccCCCHHHHhhcCCEEE
Q 021388          138 LTTKFTGKTVGIIGLGRI-GMAVAKRAEAFSCPINYYSRTEKPN----LKY------------KYYPSVVELASNCHILV  200 (313)
Q Consensus       138 ~~~~l~g~~igiiG~G~i-G~~iA~~l~~~G~~V~~~~~~~~~~----~~~------------~~~~~l~e~~~~aDvV~  200 (313)
                      .+.++.||++.|||-+++ |+++|..|...|+.|..++......    ...            ...+.+++...++|+|+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            466899999999999875 9999999999999998887542110    000            00122677788999999


Q ss_pred             EecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          201 VACPLTEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      .++|...   ..+..+   ..|+|+++||+|-..
T Consensus       103 savG~p~---~~i~~d---~ik~GavvIDvGi~~  130 (171)
T d1edza1         103 TGVPSEN---YKFPTE---YIKEGAVCINFACTK  130 (171)
T ss_dssp             ECCCCTT---CCBCTT---TSCTTEEEEECSSSC
T ss_pred             EccCCCc---cccChh---hcccCceEeeccccc
Confidence            9998431   114443   358999999999764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=4.2e-06  Score=65.00  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccc-------ccCCCHHHH-hhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKY-------KYYPSVVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~-------~~~~~l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      |++.|+|+|.+|+.+|+.|...|++|.++|.+++..     .+.       .....++++ +.++|.|+++++....+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            578999999999999999999999999999876521     111       112335554 789999999999765544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.79  E-value=5.6e-05  Score=64.35  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHH-hhcCCEEEEecCCChhhhcc
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVEL-ASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~-~~~aDvV~~~lp~~~~t~~l  212 (313)
                      .+|.|++|.|-|+|++|+.+|+.|...|++|++.|.+.....      +.. ..+.+++ -..||+++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCCcccccccccEecccc-----cccc
Confidence            359999999999999999999999999999999987654211      122 2234443 45799998765     4567


Q ss_pred             cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      |+++....++ -.+++-.+...+.+.++- +.|.++.+.
T Consensus       109 I~~~~~~~l~-ak~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLK-AKVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCC-CSEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccC-ccEEEecccCCCCCchHH-HHHHhhCcE
Confidence            8888888886 457777777888877664 556666665

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.66  E-value=1.6e-05  Score=63.77  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----c----------ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----Y----------KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~----------~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+.+....    .          ......++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4789999999999999999999999999999998763211    0          0112345678889999888874432


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL  250 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l  250 (313)
                      .  .   ......+.+..+++.+.-. -+...+.+.......
T Consensus        81 ~--~---~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  116 (182)
T d1e5qa1          81 A--T---VIKSAIRQKKHVVTTSYVS-PAMMELDQAAKDAGI  116 (182)
T ss_dssp             H--H---HHHHHHHHTCEEECSSCCC-HHHHHTHHHHHHTTC
T ss_pred             h--H---HHHHHHhhccceeecccCc-HHHHHHHHHhccccc
Confidence            1  1   1223344566777765332 123445555444444

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.58  E-value=0.0001  Score=59.46  Aligned_cols=101  Identities=15%  Similarity=0.133  Sum_probs=63.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCccc--cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNLK--YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      .++||||+|.||+..++.++.. ++++. ++|++.+....  .....+.+++..+.|+|++++|...+.     +-....
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a~~a   78 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAPK   78 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccH-----HHHHHH
Confidence            4799999999999999999875 56654 66776654332  223456677788999999999965432     223444


Q ss_pred             cCCCcEEEEcCC--Ccccc-HHHHHHHHHhCCe
Q 021388          221 LGPKGVLINIGR--GPHVD-ERELVSALVEGRL  250 (313)
Q Consensus       221 mk~ga~lIn~~r--g~~vd-~~al~~al~~~~l  250 (313)
                      ++.|.-+|.+.-  ....+ .+.|.++.+++..
T Consensus        79 L~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~  111 (170)
T d1f06a1          79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (170)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCcEEEecCccccCHHHHHHHHHHHHhcCc
Confidence            666766554432  11112 3345555555443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=8.1e-05  Score=60.15  Aligned_cols=94  Identities=14%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc---------cccCCCHHH-HhhcCCEEEEecCCChh
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK---------YKYYPSVVE-LASNCHILVVACPLTEE  208 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~l~e-~~~~aDvV~~~lp~~~~  208 (313)
                      +..+.||+|.|+|.|..+++++..|...|.+|.+++|+.++...         .....++++ ...++|+|+.++|..-.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence            34578999999999999999999999999999999998754221         001122333 24579999999986543


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      ..  .....+..++++.+++|+-=.+
T Consensus        93 ~~--~~~~~~~~~~~~~~v~D~vY~P  116 (170)
T d1nyta1          93 GD--IPAIPSSLIHPGIYCYDMFYQK  116 (170)
T ss_dssp             TC--CCCCCGGGCCTTCEEEESCCCS
T ss_pred             cC--CCCCcHHHhccCcEEEEeecCC
Confidence            21  1122234566777777765443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=0.00017  Score=54.65  Aligned_cols=100  Identities=17%  Similarity=0.252  Sum_probs=75.9

Q ss_pred             CEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388          145 KTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA  220 (313)
Q Consensus       145 ~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~  220 (313)
                      |+|+|||.    |..|..+.+.|+..|++|+..++..+...|...+.++.++-..-|++++++|. +.+..++ ++.. .
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l-~~~~-~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA-KEAV-E   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH-HHHH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH-HHHHHHH-HHHH-h
Confidence            68999994    67899999999999999999998877777777788899998899999999982 2344444 3333 3


Q ss_pred             cCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          221 LGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       221 mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      +....+++..+.    ..+++.+.+++..+.
T Consensus        79 ~g~k~v~~~~g~----~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPGA----ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             cCCceEEeccch----hhHHHHHHHHHcCCE
Confidence            445577776542    345677888777776

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.53  E-value=0.0004  Score=59.39  Aligned_cols=149  Identities=19%  Similarity=0.248  Sum_probs=91.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC---Ccc--------------------------ccccCCCHHH
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK---PNL--------------------------KYKYYPSVVE  191 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~---~~~--------------------------~~~~~~~l~e  191 (313)
                      +|.|++|.|=|+|++|+.+|+.|...|++|++.+....   ...                          +.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            58999999999999999999999999999987653321   000                          0111123344


Q ss_pred             Hh-hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC-CCCC--c
Q 021388          192 LA-SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP-HVPE--E  267 (313)
Q Consensus       192 ~~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep-~~~~--~  267 (313)
                      ++ ..||+++-|.     ..+.|+.+....++ -.+++-.+-+.+ ..++ .+.|.++.+. ++=|..-+-= ....  +
T Consensus       108 i~~~~~DIliPcA-----~~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~-~~PD~~aNaGGVi~s~~E  178 (242)
T d1v9la1         108 IFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV-VVPDILANAGGVIMSYLE  178 (242)
T ss_dssp             GGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE-EECHHHHSTHHHHHHHHH
T ss_pred             hccccccEEeecc-----hhccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeE-EeCchhhcCcchhhhhhh
Confidence            44 4799998775     34568888888886 467777888886 5666 4788888887 3434321100 0000  0


Q ss_pred             ccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       268 L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      +.+  |   ..|.-+..++..+++.+.+.+++.+.+
T Consensus       179 ~~q--n---~~~~~w~~e~v~~~l~~im~~~~~~v~  209 (242)
T d1v9la1         179 WVE--N---LQWYIWDEEETRKRLENIMVNNVERVY  209 (242)
T ss_dssp             HHH--H---HTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc--c---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            000  0   122334455666666666666666554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=6.5e-05  Score=61.42  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=62.2

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCcccc-----------------ccC---CCHHHHhhcCC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLKY-----------------KYY---PSVVELASNCH  197 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~~-----------------~~~---~~l~e~~~~aD  197 (313)
                      +.++.|+++.|+|.|..|++++..|...|.+ +.+++|+.+.....                 ...   .++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            3468999999999999999999999999985 88899986532110                 001   12445678999


Q ss_pred             EEEEecCCChhh---hcccCHHHHhccCCCcEEEEcC
Q 021388          198 ILVVACPLTEET---RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       198 vV~~~lp~~~~t---~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      +|+.++|.....   ..++.  -+..++++.+++|+.
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV  127 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence            999999854321   11111  134567777777764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.48  E-value=6.2e-05  Score=58.12  Aligned_cols=82  Identities=12%  Similarity=0.163  Sum_probs=56.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------cccc----CCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKY----YPS---VVEL-ASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~----~~~---l~e~-~~~aDvV~~~lp~~~~t~  210 (313)
                      ++|.|+|+|.+|+.+|+.|...|.+|.+.|.+++...      +...    ..+   ++++ ++++|.++.+++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            5799999999999999999999999999998765211      1111    122   3333 6789999888775433  


Q ss_pred             cccCHHHHhccCCCcEEE
Q 021388          211 HIINREVIDALGPKGVLI  228 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lI  228 (313)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            334345556676666654

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.46  E-value=0.00018  Score=61.61  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=75.6

Q ss_pred             ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCC
Q 021388          182 KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE  261 (313)
Q Consensus       182 ~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~E  261 (313)
                      +....++..|+++++|+|++++|..+.+..++ +++.+.+++|++++|++.........+.+.+.+..+.  .++....=
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~--vi~~hp~a  204 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN--ITSYHPGC  204 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE--EEECBCSS
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE--EECCCccC
Confidence            44556889999999999999999777777777 7799999999999999999998899999999888776  34443211


Q ss_pred             CCCCCcccCCCceEEccCCCCCcHHHHHHHHHHH
Q 021388          262 PHVPEELFGLENVVLMPHVGSGTVETRKTMADLV  295 (313)
Q Consensus       262 p~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~  295 (313)
                      +    |-..-..+++.   ++.+++..+++.+++
T Consensus       205 ~----pe~~g~~li~~---~~aseE~iekv~ell  231 (242)
T d2b0ja2         205 V----PEMKGQVYIAE---GYASEEAVNKLYEIG  231 (242)
T ss_dssp             C----TTTCCCEEEEE---SSSCHHHHHHHHHHH
T ss_pred             c----CccccceEEec---CCCCHHHHHHHHHHH
Confidence            1    11112233333   456777666665543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.43  E-value=0.00018  Score=57.36  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------c----ccCCCHHHHhhcCCEEEEecC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------Y----KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~----~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +.+||+|||.|.+|+.+|..++..+. ++..+|..++...+             .    ....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46799999999999999998887675 79999987753221             0    012456778999999999874


Q ss_pred             CC--hh------hhcc-c--C----H---HHHhccCCCcEEEEcCCC
Q 021388          205 LT--EE------TRHI-I--N----R---EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       205 ~~--~~------t~~l-i--~----~---~~l~~mk~ga~lIn~~rg  233 (313)
                      ..  +.      ++.- +  |    +   +.+....|.+++++++.-
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            21  11      2211 1  1    1   223445689999998754

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.40  E-value=0.0016  Score=56.86  Aligned_cols=136  Identities=13%  Similarity=0.170  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--
Q 021388          101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--  178 (313)
Q Consensus       101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--  178 (313)
                      .++++--++..+-.++++.......   |        +..+|.|+++.|=|+|++|+.+|+.|...|++|++.+.+..  
T Consensus         4 ~eATG~GV~~~~~~~l~~~~~~~~~---g--------l~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i   72 (293)
T d1hwxa1           4 ISATGRGVFHGIENFIENASYMSIL---G--------MTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSI   72 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHH---T--------CCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             chHhHHHHHHHHHHHHHhcccchhc---c--------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhh
Confidence            4566666666666666654211111   1        34569999999999999999999999999999887653221  


Q ss_pred             -Ccccc-------------------ccCCCHHHHh-hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388          179 -PNLKY-------------------KYYPSVVELA-SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD  237 (313)
Q Consensus       179 -~~~~~-------------------~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd  237 (313)
                       ...|.                   ....+.++++ ..||+++-|.     +.+.|+.+....++ -.+++-.+.+++ .
T Consensus        73 ~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~-ak~I~EgAN~P~-t  145 (293)
T d1hwxa1          73 WNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-T  145 (293)
T ss_dssp             CCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEECS-----SSSCBCTTTGGGCC-CSEEECCSSSCB-C
T ss_pred             ccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEeecc-----ccccccHHHHHHHh-hCEEeccCCCCC-C
Confidence             00000                   0011122333 4899987664     55678888888885 457788888885 4


Q ss_pred             HHHHHHHHHhCCeeEEEec
Q 021388          238 ERELVSALVEGRLGGAGLD  256 (313)
Q Consensus       238 ~~al~~al~~~~l~ga~lD  256 (313)
                      .++ .+.|.+..+. .+=|
T Consensus       146 ~eA-~~~L~~~gI~-viPD  162 (293)
T d1hwxa1         146 PQA-DKIFLERNIM-VIPD  162 (293)
T ss_dssp             HHH-HHHHHHTTCE-EECH
T ss_pred             cch-HHHHHHCCCE-EeCh
Confidence            555 4778777776 3444

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00023  Score=56.82  Aligned_cols=102  Identities=21%  Similarity=0.274  Sum_probs=66.1

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~  215 (313)
                      .+|||||+|.+|+. ....++.. ++++. ++|++++...      +.....++++++++.|+|++++|...+..  +-.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~--~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD--VVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH--HHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccc--ccc
Confidence            37999999999986 56677654 66754 6788776432      23456788999999999999999543322  212


Q ss_pred             HHHhccCCC-cEEEEc-CCCccccHHHHHHHHHhCCee
Q 021388          216 EVIDALGPK-GVLINI-GRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       216 ~~l~~mk~g-a~lIn~-~rg~~vd~~al~~al~~~~l~  251 (313)
                      ..   ++.| .+++.- ---++-+.+.|.++.++.++.
T Consensus        80 ~a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cc---ccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            22   3334 455542 123345666777777766654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00019  Score=54.05  Aligned_cols=40  Identities=18%  Similarity=0.242  Sum_probs=35.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL  181 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~  181 (313)
                      ..+.+|||+|-|..|+.++..++.+|+++.++|++++...
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA   48 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA   48 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch
Confidence            4567899999999999999999999999999999877543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.26  E-value=0.00029  Score=57.72  Aligned_cols=42  Identities=17%  Similarity=0.201  Sum_probs=37.7

Q ss_pred             cccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          138 LTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       138 ~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .+.+|.||++.|.| -|.||+.+|+.|...|++|...+|+.++
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            35679999999999 7999999999999999999999998653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.25  E-value=0.00017  Score=57.05  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      -.+++|+|||.|.+|..+|..+...|.  ++..+|+.++...+               .....+-.+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            357899999999999999999987665  69999987653111               0011223466889999999864


Q ss_pred             CChh---hhc-cc--CH-------HHHhccCCCcEEEEcCC
Q 021388          205 LTEE---TRH-II--NR-------EVIDALGPKGVLINIGR  232 (313)
Q Consensus       205 ~~~~---t~~-li--~~-------~~l~~mk~ga~lIn~~r  232 (313)
                      ....   ++. ++  |.       +.+....|.+++++++.
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            3221   111 11  11       22344467899999854

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.0032  Score=53.20  Aligned_cols=110  Identities=17%  Similarity=0.155  Sum_probs=76.7

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCC---ccc------------------c--ccCCCHHHHhh
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKP---NLK------------------Y--KYYPSVVELAS  194 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~---~~~------------------~--~~~~~l~e~~~  194 (313)
                      +.++.|+++.|=|+|++|+.+|+.|. ..|++|++.+.+...   +.+                  .  ....+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            34689999999999999999999995 789998876532210   000                  0  01124556654


Q ss_pred             -cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          195 -NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       195 -~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                       .||+++-|.     ..+.|+++....++- .+++-.+-+.+. .++ .+.|.++.+. ++=|.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~-~~PD~  160 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL-VVPDI  160 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE-EECHH
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE-EechH
Confidence             899987664     456799999999974 577888888864 444 5778888886 34443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.19  E-value=0.00046  Score=54.08  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCcccc--------------ccCCCHHHHhhcCCEEEEecCCCh-
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLKY--------------KYYPSVVELASNCHILVVACPLTE-  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~~--------------~~~~~l~e~~~~aDvV~~~lp~~~-  207 (313)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|+.++...+.              .......+.+++||+|+++..... 
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999999987665  799999877643210              011223456789999999853222 


Q ss_pred             --hhhc-cc--C-------HHHHhccCCCcEEEEcCCC
Q 021388          208 --ETRH-II--N-------REVIDALGPKGVLINIGRG  233 (313)
Q Consensus       208 --~t~~-li--~-------~~~l~~mk~ga~lIn~~rg  233 (313)
                        +++. ++  |       .+.+....|.+++++++..
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence              1111 11  1       1223445688999998663

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.16  E-value=0.00019  Score=56.65  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c-----ccCCCHHHHhhcCCEEEEecCCCh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y-----KYYPSVVELASNCHILVVACPLTE  207 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~-----~~~~~l~e~~~~aDvV~~~lp~~~  207 (313)
                      |+|+|||.|.+|..+|-.+...|.  ++..+|..++...+          .     ....+-.+.+++||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999999987665  68899987653211          0     001122355799999999865321


Q ss_pred             -------hhhc-cc--C----H---HHHhccCCCcEEEEcCCC
Q 021388          208 -------ETRH-II--N----R---EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       208 -------~t~~-li--~----~---~~l~~mk~ga~lIn~~rg  233 (313)
                             .++. ++  |    +   ..+....|++++++++..
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence                   1111 11  1    1   223445789999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00015  Score=57.16  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=36.6

Q ss_pred             cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          136 YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       136 ~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .++..++.||++.|||.|.+|..-++.|..+|++|.++++.
T Consensus         5 lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             chhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34566799999999999999999999999999999999653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.14  E-value=0.00012  Score=58.75  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.2

Q ss_pred             CEEEEE-cCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGII-GLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igii-G~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      +||+|| |.|.||+.+|++|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999 89999999999999999999999998753

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.14  E-value=0.0017  Score=50.56  Aligned_cols=102  Identities=20%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388          143 TGKTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI  218 (313)
Q Consensus       143 ~g~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l  218 (313)
                      .-++|+|||.    |..|..+++.|+.+|++|+..++......|...+.++.++-..-|++++++|. +.+..++ ++..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~-~e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV-EQAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-HHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCH-HHHHHHH-HHHH
Confidence            4579999996    47999999999999999999999877777777788999998899999999982 2333343 3333


Q ss_pred             hccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          219 DALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                       .+....++++.|-   .+ +.+.+.+++..+.
T Consensus        96 -~~g~k~v~~~~G~---~~-ee~~~~a~~~gi~  123 (139)
T d2d59a1          96 -KKGAKVVWFQYNT---YN-REASKKADEAGLI  123 (139)
T ss_dssp             -HHTCSEEEECTTC---CC-HHHHHHHHHTTCE
T ss_pred             -HhCCCEEEEeccc---cC-HHHHHHHHHCCCE
Confidence             3456677777663   23 4455666666565

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.12  E-value=0.00023  Score=56.14  Aligned_cols=90  Identities=12%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c-----ccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y-----KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~-----~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      ...++|+|||.|.+|..+|..|...|.  ++..+|+.++...+          .     ....+.+ .+++||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEecc
Confidence            356799999999999999999987664  79999987642111          0     0123444 4689999999864


Q ss_pred             CChh---hhc-cc--C-------HHHHhccCCCcEEEEcCC
Q 021388          205 LTEE---TRH-II--N-------REVIDALGPKGVLINIGR  232 (313)
Q Consensus       205 ~~~~---t~~-li--~-------~~~l~~mk~ga~lIn~~r  232 (313)
                      ....   ++. ++  |       .+.+..-.|.+++++++.
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            2211   111 11  1       122444568899999874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00039  Score=57.19  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ..|+|.|+| .|.+|+.+++.|...|++|.++.|++.+..     +..       ...+++++++.+|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 799999999999999999999988765321     111       123466789999999988754

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.09  E-value=0.00058  Score=61.21  Aligned_cols=85  Identities=19%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCc----------cc--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388          144 GKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPN----------LK--YKYYPSVVELASNCHILVVACPLTEET  209 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~----------~~--~~~~~~l~e~~~~aDvV~~~lp~~~~t  209 (313)
                      -++++|||.|..++.-++.+. -++. +|.+|+|+++..          .+  +..+.+++++++.||+|+++++. +.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence            368999999999998888664 6776 599999986531          12  23467899999999999988863 334


Q ss_pred             hcccCHHHHhccCCCcEEEEcCC
Q 021388          210 RHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       210 ~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ..++..+   .+|||+.+..+|.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            5577654   5789999988874

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00028  Score=55.16  Aligned_cols=89  Identities=20%  Similarity=0.346  Sum_probs=57.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c----ccCCCHHHHhhcCCEEEEecCC--C
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y----KYYPSVVELASNCHILVVACPL--T  206 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~----~~~~~l~e~~~~aDvV~~~lp~--~  206 (313)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|..++...+          +    ....+..+.+++||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            489999999999999998875554  79999987643211          0    1112234568999999998632  2


Q ss_pred             h-hhh-ccc--C-------HHHHhccCCCcEEEEcCCC
Q 021388          207 E-ETR-HII--N-------REVIDALGPKGVLINIGRG  233 (313)
Q Consensus       207 ~-~t~-~li--~-------~~~l~~mk~ga~lIn~~rg  233 (313)
                      + .++ .++  |       .+.+....|++++++++..
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            2 111 111  1       1234455789999998743

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00024  Score=56.95  Aligned_cols=86  Identities=21%  Similarity=0.253  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc------CCC-HHHHhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY------YPS-VVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~-l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.|+++++..     |+..      ..+ .++.....|+++.++...... 
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-  105 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence            578999999999999999999999999999998876422     2110      111 223344567777665432110 


Q ss_pred             cccCHHHHhccCCCcEEEEcC
Q 021388          211 HIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~  231 (313)
                       .+ ...++.++++..++.+|
T Consensus       106 -~~-~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         106 -DF-NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CT-TTGGGGEEEEEEEEECC
T ss_pred             -hH-HHHHHHhhccceEEEec
Confidence             11 33566677777777765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.06  E-value=0.00076  Score=53.72  Aligned_cols=37  Identities=30%  Similarity=0.454  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .|.++.|+|.|.||...++.++.+|++|++.++++++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence            5679999999999999999999999999999987653

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.05  E-value=0.00087  Score=51.83  Aligned_cols=84  Identities=12%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCc----------------cccccCCCHHHHhh
Q 021388          141 KFTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPN----------------LKYKYYPSVVELAS  194 (313)
Q Consensus       141 ~l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~e~~~  194 (313)
                      ++.+++|||+|+          ++-...+++.|...|++|.+|||.....                .......++++++.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            467899999998          4578889999999999999999743210                01223578999999


Q ss_pred             cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEc
Q 021388          195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      .+|+|+++++..+     + .+....++++.+++|+
T Consensus        90 ~~D~ivi~t~h~~-----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDEL-----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCGG-----G-HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCHH-----H-HHHHHHhcCCCEEEEC
Confidence            9999999987432     1 3455667788999997

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.02  E-value=0.00067  Score=52.23  Aligned_cols=108  Identities=19%  Similarity=0.274  Sum_probs=75.5

Q ss_pred             cCCCEEEEEcC----ChHHHHHHHHHHhCC-CCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          142 FTGKTVGIIGL----GRIGMAVAKRAEAFS-CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       142 l~g~~igiiG~----G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      +.-++|+|||.    |..|..+.+.|+..| .+|+..++..+...|...+.++.++-...|++++++| .+.+..++ ++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~-~~   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTL-IQ   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSC-HHHHHHHH-HH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecC-hHHhHHHH-HH
Confidence            55689999996    889999999998766 6899999988777777778899999889999999999 33445554 33


Q ss_pred             HHhccCCCcEEEEcCCCcc-----ccHHHHHHHHHhCCee
Q 021388          217 VIDALGPKGVLINIGRGPH-----VDERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~-----vd~~al~~al~~~~l~  251 (313)
                      ..+.=-++++++..+-++.     ..+++|.+..++..++
T Consensus        84 ~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          84 CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            3333233344444333332     2344566666665554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0011  Score=52.99  Aligned_cols=85  Identities=22%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----cccc-----cCCCHHHHh--------hcCCEEEEec
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYK-----YYPSVVELA--------SNCHILVVAC  203 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l~e~~--------~~aDvV~~~l  203 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++++.     .++.     ...+..+..        ..+|+|+-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            46789999999999999999999999 599999876532     1221     112333222        2478887777


Q ss_pred             CCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          204 PLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       204 p~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +. +.+   + +..++.+++|..++.+|-
T Consensus       106 G~-~~~---~-~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         106 GA-EAS---I-QAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CC-HHH---H-HHHHHHSCTTCEEEECSC
T ss_pred             CC-chh---H-HHHHHHhcCCCEEEEEec
Confidence            63 222   1 456677888887777764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.97  E-value=0.00066  Score=53.66  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------cc---cCCCHHHHhhcCCEEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------YK---YYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~~---~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ..||+|||.|.+|..+|..+...+. ++..||+.++...+             ..   ...+..+.+++||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4699999999999999988876665 68899987753221             00   0123346678999999987532


Q ss_pred             hh---h-----hc-cc--C----HHH---HhccCCCcEEEEcCCC
Q 021388          207 EE---T-----RH-II--N----REV---IDALGPKGVLINIGRG  233 (313)
Q Consensus       207 ~~---t-----~~-li--~----~~~---l~~mk~ga~lIn~~rg  233 (313)
                      ..   +     +. ++  |    ++.   +....|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     11 11  1    122   3344589999998765

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.96  E-value=0.0078  Score=50.91  Aligned_cols=103  Identities=20%  Similarity=0.282  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCC---ccc------------------c--ccCCCHHHH-hhc
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKP---NLK------------------Y--KYYPSVVEL-ASN  195 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~---~~~------------------~--~~~~~l~e~-~~~  195 (313)
                      .|.|++|.|-|+|++|..+|+.|. .+|++|++.+.+...   +.+                  +  ....+.+++ -.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            489999999999999999999985 689998765432210   000                  0  011234554 357


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      ||+++-|.     ..+.|+.+....++ -.+++-.+-+.+. .++ .+.|.++.+.
T Consensus       109 ~DIl~PcA-----~~~~I~~~~a~~i~-ak~I~e~AN~p~t-~ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAA-----IEEVITKKNADNIK-AKIVAEVANGPVT-PEA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECS-----CSCCBCTTGGGGCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHhcc-ccEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence            99988765     34678888888885 4577888888864 455 5778888776

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.93  E-value=0.00016  Score=58.59  Aligned_cols=92  Identities=16%  Similarity=0.096  Sum_probs=60.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc---------------ccCCCHHHHhhcCCEEEEecC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY---------------KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~---------------~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .++.||++.|+|.|..+++++..|...| +|.+++|+.++....               ....++......+|+++.+.|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4589999999999999999999998877 899999987642210               012344556678999999998


Q ss_pred             CChhhhccc-CHHHHhccCCCcEEEEcCC
Q 021388          205 LTEETRHII-NREVIDALGPKGVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li-~~~~l~~mk~ga~lIn~~r  232 (313)
                      .......-. ..-.+..++++.+++|+.=
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~y  121 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLIY  121 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECCC
T ss_pred             ccccccccccchhhhhccCcccceeeecC
Confidence            643211100 0011234455666666543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.00025  Score=57.30  Aligned_cols=67  Identities=15%  Similarity=-0.017  Sum_probs=47.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc----c-----cCCCHH-HHhhcCCEEEEecCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY----K-----YYPSVV-ELASNCHILVVACPLT  206 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~----~-----~~~~l~-e~~~~aDvV~~~lp~~  206 (313)
                      ..+.|+++.|+|.|..+++++..|...+.+|.+++|+.++....    .     ...+.+ ..+.++|+|+.++|..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            35789999999999999999999988777899999987532210    0     000111 1246788888888854

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00044  Score=48.45  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN  180 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~  180 (313)
                      |+|||+|-|..|+-++...+.+|+++.++|+.++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            689999999999999999999999999999877643

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.0029  Score=48.93  Aligned_cols=102  Identities=22%  Similarity=0.211  Sum_probs=73.3

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHHhCCCCEEEecCCCC--CccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388          143 TGKTVGIIGL----GRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINRE  216 (313)
Q Consensus       143 ~g~~igiiG~----G~iG~~iA~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~  216 (313)
                      .-|+|+|||.    +..|..+++.|+..|+++..+.+.+.  ...+...+.++.++-...|++++++| .+.+..++ ++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v-~~   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHL-PE   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH-HH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-HHHHHHHH-HH
Confidence            4578999997    67999999999999999999987653  33455567788888888999999998 33455554 33


Q ss_pred             HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388          217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~  251 (313)
                      .. .+...++++..|-   .+ +++.+..++..+.
T Consensus        90 ~~-~~g~k~i~~q~G~---~~-~e~~~~a~~~Gi~  119 (136)
T d1iuka_          90 VL-ALRPGLVWLQSGI---RH-PEFEKALKEAGIP  119 (136)
T ss_dssp             HH-HHCCSCEEECTTC---CC-HHHHHHHHHTTCC
T ss_pred             HH-hhCCCeEEEecCc---cC-HHHHHHHHHcCCE
Confidence            33 3466788887652   34 4555666665554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.00054  Score=55.52  Aligned_cols=102  Identities=18%  Similarity=0.130  Sum_probs=67.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCcc------c----cccCCCHHHHhh--cCCEEEEecCCChhhh
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPNL------K----YKYYPSVVELAS--NCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~~------~----~~~~~~l~e~~~--~aDvV~~~lp~~~~t~  210 (313)
                      .++||||+|.+|+..++.++.. +++|. ++|++++...      +    ...+.+++++++  +.|+|++++|...+..
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            3799999999999999999876 66766 5687654211      1    224578999874  5789999998543322


Q ss_pred             cccCHHHHhccCCCcE-EEEcC-CCccccHHHHHHHHHhCCee
Q 021388          211 HIINREVIDALGPKGV-LINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~-lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                           -....++.|.- ++.-- --.+-+.+.|.+..++.++.
T Consensus        82 -----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence                 23344555543 33311 12345567788888888776

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.0003  Score=56.56  Aligned_cols=61  Identities=23%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc------cccCCCHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK------YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~------~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      .+++|.|+|.|..|++++..|+..|+ +|.+++|+.++...      .....+.  -..++|+|+.++|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheecccc
Confidence            57899999999999999999999998 69999998764221      1111111  13578898888884

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.79  E-value=0.0014  Score=51.12  Aligned_cols=88  Identities=24%  Similarity=0.298  Sum_probs=55.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------c----ccCCCHHHHhhcCCEEEEecCC-
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------Y----KYYPSVVELASNCHILVVACPL-  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~----~~~~~l~e~~~~aDvV~~~lp~-  205 (313)
                      ++|+|||.|.+|..+|-.+...+. ++..+|..++...+             .    ....+. +.++++|+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence            699999999999999998876665 78899987753211             0    011233 347899999999843 


Q ss_pred             -Ch-hhh-ccc--C----HH---HHhccCCCcEEEEcCCC
Q 021388          206 -TE-ETR-HII--N----RE---VIDALGPKGVLINIGRG  233 (313)
Q Consensus       206 -~~-~t~-~li--~----~~---~l~~mk~ga~lIn~~rg  233 (313)
                       .+ .++ .++  |    ++   .+....|.++++.++..
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP  120 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP  120 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc
Confidence             22 122 111  1    12   23334678899887653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.79  E-value=0.00088  Score=53.30  Aligned_cols=85  Identities=18%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhCCC-CEE-EecCCCCCc-------cccc-cCCCHHHHh-----hcCCEEEEecCCChh
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAFSC-PIN-YYSRTEKPN-------LKYK-YYPSVVELA-----SNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~G~-~V~-~~~~~~~~~-------~~~~-~~~~l~e~~-----~~aDvV~~~lp~~~~  208 (313)
                      .++||||.|.||+. +.+.++.+.. ++. +.+++.+..       .+.. ...++++++     .+.|+|+.++|...+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            48999999999986 6678876644 554 457765421       1222 223455543     468999999984433


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      ..+   +..+...+.|..+||-+.
T Consensus        85 ~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHH---HHHHHHHCTTCEEEECST
T ss_pred             HHh---HHHHHHHHcCCEEEEccc
Confidence            332   335666899999999875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.77  E-value=0.00057  Score=54.55  Aligned_cols=102  Identities=8%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhC-CCCEEEecCCCCCcc------cc-ccCCCHHHHhh-cCCEEEEecCCChhhhcccC
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAF-SCPINYYSRTEKPNL------KY-KYYPSVVELAS-NCHILVVACPLTEETRHIIN  214 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~-G~~V~~~~~~~~~~~------~~-~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li~  214 (313)
                      .++||||+|.+|+. ....++.. +.++.++|++++...      +. ..+.+.+++++ +.|+|++++|...+..  +-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--cc
Confidence            47999999999976 56777665 557778888764321      11 23567777765 6799999998443322  22


Q ss_pred             HHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          215 REVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       215 ~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      ...++   .| .+++.-- --.+-+.+.|.++.++.++.
T Consensus        80 ~~al~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLH---LGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHH---TTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccc---cccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333   33 3555421 23345667788888777665

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.75  E-value=0.0011  Score=58.77  Aligned_cols=82  Identities=22%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc---------ccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL---------KYKYYPSVVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~---------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      +++||||.|..++..++.+. -+.. +|.+|+|+++...         +.....+.++.+..||+|+.++|.   +..++
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~~  202 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPVV  202 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCCB
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---ccccc
Confidence            58999999999999988886 4666 5999999875322         122344667888999999998774   44566


Q ss_pred             CHHHHhccCCCcEEEEcCC
Q 021388          214 NREVIDALGPKGVLINIGR  232 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~r  232 (313)
                      ..+   .+|||+.+..+|.
T Consensus       203 ~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         203 KAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             CGG---GCCTTCEEEECSC
T ss_pred             chh---hcCCCCeEeecCC
Confidence            554   5799999999985

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.71  E-value=0.0008  Score=53.76  Aligned_cols=93  Identities=20%  Similarity=0.303  Sum_probs=61.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c-----ccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y-----KYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~-----~~~~~l~e~~~~aDvV~~~l  203 (313)
                      .+...+|+|||.|.+|..+|-.+...|.  ++..+|..++...+          +     .....-.+-+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4677899999999999999999998887  69999987543211          0     00112235688999999976


Q ss_pred             CC--Ch-hhhc-cc--CH-------HHHhccCCCcEEEEcCCC
Q 021388          204 PL--TE-ETRH-II--NR-------EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       204 p~--~~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg  233 (313)
                      ..  .+ +++. ++  |.       ..+....+.+++++++..
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            43  22 2221 11  11       123344678999998754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.69  E-value=0.0026  Score=54.53  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC---Cccccc--------------cCC--------------C
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK---PNLKYK--------------YYP--------------S  188 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~---~~~~~~--------------~~~--------------~  188 (313)
                      .++.|+++.|=|+|++|+.+|+.|...|++|++.+.+..   .+.|..              ...              +
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            458999999999999999999999999999875532110   000000              000              1


Q ss_pred             HHH-HhhcCCEEEEecCCChhhhcccCHHHHhccCC-Cc-EEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388          189 VVE-LASNCHILVVACPLTEETRHIINREVIDALGP-KG-VLINIGRGPHVDERELVSALVEGRLGGAGLDV  257 (313)
Q Consensus       189 l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~-ga-~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV  257 (313)
                      .++ +-..||+++-|     .+.+.|+.+..+.++. ++ +++-.+.+++.+ ++....|+++.+. +.=|.
T Consensus       112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~-ea~~~ll~~~gI~-vvPD~  176 (255)
T d1bgva1         112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTN-EALRFLMQQPNMV-VAPSK  176 (255)
T ss_dssp             TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCH-HHHHHHHHCTTCE-EECHH
T ss_pred             hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcch-HHHHHHHHhcCCE-EehHh
Confidence            112 23569987644     3567788888888864 34 666666666554 4555567776665 34443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.68  E-value=0.00076  Score=52.64  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cc-cCCCHHHHhhcCCEEEEec--C
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YK-YYPSVVELASNCHILVVAC--P  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~-~~~~l~e~~~~aDvV~~~l--p  204 (313)
                      ++|+|||.|.+|..+|..+...|.  ++..+|..+....+               .. ...+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            489999999999999999998775  79999987763211               00 1123456789999999986  3


Q ss_pred             CChh-hhcc-c--C----H---HHHhccCCCcEEEEcCCC
Q 021388          205 LTEE-TRHI-I--N----R---EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       205 ~~~~-t~~l-i--~----~---~~l~~mk~ga~lIn~~rg  233 (313)
                      ..+. ++.- +  |    .   +.+....|.+++++++..
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            3331 1111 1  1    1   223344589999998653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.00042  Score=56.09  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            57899999999999999999999998 6899998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00086  Score=53.48  Aligned_cols=37  Identities=30%  Similarity=0.553  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhH
Confidence            5789999999999999999999999999988876653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.45  E-value=0.0012  Score=53.24  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            47789999999999999999999998 69999987653

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.42  E-value=0.023  Score=44.86  Aligned_cols=91  Identities=8%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCcc----------------ccccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNL----------------KYKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +|.|++|++||=|+ +.++++..+..||+++....+..-...                ......++++.++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            37899999999764 678999999999999998887532211                1223568999999999988654


Q ss_pred             CCChh------------hhcccCHHHHhccCCCcEEEEcC
Q 021388          204 PLTEE------------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p~~~~------------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      -....            ....++.+.++.+|++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            21111            12355788888889888887776

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.0034  Score=50.00  Aligned_cols=103  Identities=16%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEec---CCCCCccccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHH
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYS---RTEKPNLKYKYYPSVVELAS--NCHILVVACPLTEETRHIINREV  217 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~---~~~~~~~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~  217 (313)
                      .+|||||+|.||+..++.++...  -.+.+++   +............++++++.  +.|+|++++|..  +..-+-...
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~--~H~~~~~~a   85 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESS--SHEDYIRQF   85 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGG--GHHHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccc--ccccccccc
Confidence            37999999999999888887543  1233333   22211112223457899886  568899999844  332222333


Q ss_pred             HhccCCCcEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          218 IDALGPKGVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       218 l~~mk~ga~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      ++.=|  .+++.-- --++-+.+.|.++.++.+..
T Consensus        86 l~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          86 LQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            33222  4555532 23566777888877666654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.41  E-value=0.0014  Score=51.09  Aligned_cols=88  Identities=20%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-----------c------ccCCCHHHHhhcCCEEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-----------Y------KYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-----------~------~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|..++...+           .      ....+ .+.+++||+|++....
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence            589999999999999999986665  58899987653211           0      01123 3678999999988642


Q ss_pred             --Chh-hhc-cc--C----H---HHHhccCCCcEEEEcCCC
Q 021388          206 --TEE-TRH-II--N----R---EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       206 --~~~-t~~-li--~----~---~~l~~mk~ga~lIn~~rg  233 (313)
                        .+. ++. ++  |    +   +.+....|.+++++++..
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence              221 111 11  1    1   223445678999998773

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.0028  Score=51.05  Aligned_cols=102  Identities=16%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             CEEEEEcCChHHHH-HHHHHHhCC--CCEE-EecCCCCCcc------cc-ccCCCHHHHhh--cCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMA-VAKRAEAFS--CPIN-YYSRTEKPNL------KY-KYYPSVVELAS--NCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~-iA~~l~~~G--~~V~-~~~~~~~~~~------~~-~~~~~l~e~~~--~aDvV~~~lp~~~~t~~  211 (313)
                      .++||||+|.+|+. .+..++.++  +++. ++|++++...      +. ..+.+++|+++  +.|+|++++|...+.. 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~-   82 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   82 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence            47999999999987 477787754  3554 6788765321      11 23578999886  4789999998443322 


Q ss_pred             ccCHHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          212 IINREVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       212 li~~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                       +-...   ++.| .+++.-- --++-+.++|.+..++.+..
T Consensus        83 -~~~~a---l~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          83 -FIEKA---LRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             -HHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             -ccccc---cccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence             22333   3334 4555432 22445666688887776654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.27  E-value=0.0014  Score=51.89  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence            4789999999999999999999999999999987653

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.21  E-value=0.014  Score=45.68  Aligned_cols=90  Identities=12%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCC-Cc---------cccccCCCHHHHhhcCCEEEEecCCChh
Q 021388          142 FTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEK-PN---------LKYKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       142 l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~-~~---------~~~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      |.|++|++||=   |++.++++..+..||+++.++-+... ..         .......++++.++++|+|...-...+.
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999996   45899999999999999765543222 11         1123356889999999998754221110


Q ss_pred             -----------hhcccCHHHHhccCCCcEEEEcC
Q 021388          209 -----------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       209 -----------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                                 ...-++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                       11235777778888888777665

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.20  E-value=0.0014  Score=51.23  Aligned_cols=91  Identities=15%  Similarity=0.237  Sum_probs=58.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c------ccCCCHHHHhhcCCEEEEecCC-
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y------KYYPSVVELASNCHILVVACPL-  205 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~------~~~~~l~e~~~~aDvV~~~lp~-  205 (313)
                      .||+|||.|.+|..+|-.+...|.  ++..+|..++...+          +      ....+. +.+++||+|+++.-. 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            489999999999999999987666  69999987653211          0      012233 458899999998732 


Q ss_pred             -Ch-hhhc-cc--CH-------HHHhccCCCcEEEEcCCCccccH
Q 021388          206 -TE-ETRH-II--NR-------EVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       206 -~~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                       .+ +++. ++  |.       ..+....|+++++.++  +.+|.
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvDv  123 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVDI  123 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchHH
Confidence             22 1211 11  11       2234456788999887  34443

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.02  Score=45.01  Aligned_cols=97  Identities=8%  Similarity=0.077  Sum_probs=64.5

Q ss_pred             cCCCEEEEEcC--ChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------ccccCCCHHHHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGL--GRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KYKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~--G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      |.|++|++||=  .++-++++..+..||+++....|..-...                ......++++.++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            57999999994  57999999999999999998877432110                1223568999999999998765


Q ss_pred             CCChh------------h-hcccCHHHHhccCCCcEEEEcC---CCccccH
Q 021388          204 PLTEE------------T-RHIINREVIDALGPKGVLINIG---RGPHVDE  238 (313)
Q Consensus       204 p~~~~------------t-~~li~~~~l~~mk~ga~lIn~~---rg~~vd~  238 (313)
                      -....            . ....+......+|++++|.-+.   ||.=|+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~  131 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  131 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccch
Confidence            42211            0 1122333444577888887766   4544443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0012  Score=52.54  Aligned_cols=92  Identities=14%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-------------c---ccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-------------Y---KYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-------------~---~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+...+|+|||.|.+|..+|-.|...|.  ++..+|+..+...+             .   ....+. +.+++||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            3566799999999999999999987776  69999987542111             0   011233 456899999988


Q ss_pred             cCC--Ch-hhhc-cc--CHHH-------HhccCCCcEEEEcCCC
Q 021388          203 CPL--TE-ETRH-II--NREV-------IDALGPKGVLINIGRG  233 (313)
Q Consensus       203 lp~--~~-~t~~-li--~~~~-------l~~mk~ga~lIn~~rg  233 (313)
                      ...  .+ +++. ++  |.+.       +....|++++++++..
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP  138 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP  138 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence            632  22 2221 11  1111       2334689999998763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.13  E-value=0.0026  Score=50.13  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc-----CCCH----HHHhhcCCEEEEecCCChh
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY-----YPSV----VELASNCHILVVACPLTEE  208 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l----~e~~~~aDvV~~~lp~~~~  208 (313)
                      .|++|.|+|.|.||...++.++..|.+|++.++++++.     .++..     ..+.    .+.....|.++.+.+ .+.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            57899999999999999999999999999998876532     22211     1222    233455666666554 333


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCC
Q 021388          209 TRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      +.    ...+..++++..++.++-
T Consensus       106 ~~----~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         106 AF----QSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             HH----HHHHHHEEEEEEEEECCC
T ss_pred             HH----HHHHHHhccCCceEeccc
Confidence            22    556777888888887763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0078  Score=47.79  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.+|.|+|. |.+|....+.++.+|++|++.+++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccc
Confidence            5789999995 99999999999999999998887654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.08  E-value=0.0027  Score=49.63  Aligned_cols=92  Identities=17%  Similarity=0.315  Sum_probs=59.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------cccCCCHHHHhhcCCEEEEecC--C
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YKYYPSVVELASNCHILVVACP--L  205 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~e~~~~aDvV~~~lp--~  205 (313)
                      .+|+||| .|.+|+.+|-.+...|.  ++..+|........              .....+..+.++.||+|+++..  .
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            4899999 59999999999998776  48888876532110              0112456678999999998864  2


Q ss_pred             Ch-hhhc-cc--C----H---HHHhccCCCcEEEEcCCCccccH
Q 021388          206 TE-ETRH-II--N----R---EVIDALGPKGVLINIGRGPHVDE  238 (313)
Q Consensus       206 ~~-~t~~-li--~----~---~~l~~mk~ga~lIn~~rg~~vd~  238 (313)
                      .+ +++. ++  |    +   +.+....|.++++.++..  +|.
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP--vD~  122 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP--VNS  122 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC--HHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc--hhh
Confidence            22 1211 11  1    1   123334788999998654  554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.0054  Score=48.65  Aligned_cols=60  Identities=8%  Similarity=0.073  Sum_probs=41.4

Q ss_pred             CEEEEEcCChHHHHHHHH--HHh---C-CCCEEEecCCCCCccc--------------cccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIGLGRIGMAVAKR--AEA---F-SCPINYYSRTEKPNLK--------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~--l~~---~-G~~V~~~~~~~~~~~~--------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +||+|||.|++|.+.+-.  ++.   + +-++..+|..+++...              .....+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            489999999998776643  221   2 2369999987653210              1123577889999999999875

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.92  E-value=0.0081  Score=48.48  Aligned_cols=61  Identities=20%  Similarity=0.171  Sum_probs=41.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhC-CCCEEEe-cCCCCCcc-----------------------ccccCCCHHHHhhcCCEEE
Q 021388          146 TVGIIGLGRIGMAVAKRAEAF-SCPINYY-SRTEKPNL-----------------------KYKYYPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~-G~~V~~~-~~~~~~~~-----------------------~~~~~~~l~e~~~~aDvV~  200 (313)
                      +|||.|+|+||+.+++.+... +++|.+. |+.+....                       +.....++.++..++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999864 4677665 44432110                       0111235667777888888


Q ss_pred             EecCCC
Q 021388          201 VACPLT  206 (313)
Q Consensus       201 ~~lp~~  206 (313)
                      -|.|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            888743

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.85  E-value=0.0034  Score=52.40  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=60.7

Q ss_pred             CCEEEEEcCChHHHH-HHHHHHhC-CCCEE-EecCCCCCcc------c-----cccCCCHHHHhh--cCCEEEEecCCCh
Q 021388          144 GKTVGIIGLGRIGMA-VAKRAEAF-SCPIN-YYSRTEKPNL------K-----YKYYPSVVELAS--NCHILVVACPLTE  207 (313)
Q Consensus       144 g~~igiiG~G~iG~~-iA~~l~~~-G~~V~-~~~~~~~~~~------~-----~~~~~~l~e~~~--~aDvV~~~lp~~~  207 (313)
                      .-+|||||+|.+|+. ++..++.. +++|. ++|++++...      +     ...+.++++++.  +.|+|++++|...
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~  112 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  112 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhh
Confidence            348999999999975 56666654 67765 7788765321      1     123578899886  5789999998443


Q ss_pred             hhhcccCHHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388          208 ETRHIINREVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG  251 (313)
Q Consensus       208 ~t~~li~~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~  251 (313)
                      +..  +   ....|+.| .+++.-- -..+-+...|.++.++.+..
T Consensus       113 H~~--~---~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~  153 (221)
T d1h6da1         113 HAE--F---AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  153 (221)
T ss_dssp             HHH--H---HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             hhh--H---HHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCc
Confidence            322  2   22333344 3333321 22344555666666555443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0045  Score=48.26  Aligned_cols=78  Identities=4%  Similarity=-0.005  Sum_probs=51.2

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------ccccc----CCC---HHH-HhhcCCEEEEecCCChh
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKY----YPS---VVE-LASNCHILVVACPLTEE  208 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~----~~~---l~e-~~~~aDvV~~~lp~~~~  208 (313)
                      ++-|+|+|.+|+.+++.|...|.+|.+.+..++..         .+...    ..+   +++ -+.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58999999999999999999999999998766421         11111    112   222 25689999888875544


Q ss_pred             hhcccCHHHHhccCCCc
Q 021388          209 TRHIINREVIDALGPKG  225 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga  225 (313)
                      +.  .-......+.|..
T Consensus        85 n~--~~~~~~r~~~~~~   99 (153)
T d1id1a_          85 NA--FVVLSAKDMSSDV   99 (153)
T ss_dssp             HH--HHHHHHHHHTSSS
T ss_pred             HH--HHHHHHHHhCCCC
Confidence            33  2233444554553

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.13  Score=42.48  Aligned_cols=122  Identities=15%  Similarity=0.132  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCC----
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEK----  178 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~----  178 (313)
                      +|=-+++-+|+.+|-.                   +..|...+|.|+|.|.-|-.+|+.+...|.+ ++.+|+..-    
T Consensus         5 TaaV~LAgll~a~~~~-------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~   65 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT-------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEN   65 (222)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcC
Confidence            5556778888887744                   3468999999999999999999999988875 888887521    


Q ss_pred             Cc----cc-----------cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHH
Q 021388          179 PN----LK-----------YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVS  243 (313)
Q Consensus       179 ~~----~~-----------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~  243 (313)
                      ..    ..           .....++.+++..++++...-     +.+++.++.+..|.+..++.=.|+-..--+.+  .
T Consensus        66 r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~  138 (222)
T d1vl6a1          66 DPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--L  138 (222)
T ss_dssp             SGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--H
T ss_pred             cccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--h
Confidence            00    00           112347888899998765543     46788889999999999999999876544443  4


Q ss_pred             HHHhCCee
Q 021388          244 ALVEGRLG  251 (313)
Q Consensus       244 al~~~~l~  251 (313)
                      +...|+..
T Consensus       139 a~~~G~ai  146 (222)
T d1vl6a1         139 AREAGAFI  146 (222)
T ss_dssp             HHHTTCSE
T ss_pred             heeccceE
Confidence            56677765

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=95.66  E-value=0.011  Score=46.35  Aligned_cols=62  Identities=18%  Similarity=0.227  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCCCc--cccccCCCHHHHhhcCCEEEEecC
Q 021388          143 TGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEKPN--LKYKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .|.+|+++|=   +++.++++..+..||+++.+..+..-..  .......++++.++.+|+|.....
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r~   68 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRI   68 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeEE
Confidence            5899999996   6899999999999999998887754322  223345688999999999876543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.0062  Score=48.79  Aligned_cols=61  Identities=10%  Similarity=0.186  Sum_probs=42.9

Q ss_pred             CCEEEEEcCChHHHHHHH---HHH--hC-CCCEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEE
Q 021388          144 GKTVGIIGLGRIGMAVAK---RAE--AF-SCPINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~---~l~--~~-G~~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~  200 (313)
                      +.+|+|||.|++|...+-   .++  .+ +-++..+|.+++...+                 .....+.+|.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            469999999999976432   332  23 3489999998653211                 112468899999999999


Q ss_pred             EecC
Q 021388          201 VACP  204 (313)
Q Consensus       201 ~~lp  204 (313)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.52  E-value=0.0056  Score=48.83  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++.+|++++ +.|+++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~   64 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES   64 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence            57899999999999999999999999754 5566554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.47  E-value=0.0055  Score=48.92  Aligned_cols=36  Identities=14%  Similarity=0.324  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~  178 (313)
                      .+|+|.|||.|..|...|..|+..|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999995 999998654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.032  Score=44.92  Aligned_cols=91  Identities=5%  Similarity=-0.006  Sum_probs=64.2

Q ss_pred             ccCCCEEEEEcC--ChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------ccccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGL--GRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KYKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~--G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .|.|.+|++||=  .++..+++..+..||+++.+..|..-...                ......++++.++.+|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            378999999994  48999999999999999999987432111                122357899999999998775


Q ss_pred             cCCChh-------------h-hcccCHHHHhccCCCcEEEEcC
Q 021388          203 CPLTEE-------------T-RHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       203 lp~~~~-------------t-~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .-....             . ..+.....+..+|++++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            532111             0 1122344455678899988777

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0085  Score=45.02  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      +++.|||.|.||-.+|..+..+|++|..+.+.+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            68999999999999999999999999999887653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.44  E-value=0.045  Score=43.48  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKP  179 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~  179 (313)
                      -.|.+|.|+|.|.+|...++.++.+|++ |++.|+++++
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            3578999999999999999999999995 7778887654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.41  E-value=0.0061  Score=44.08  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCChHH-HHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGLGRIG-MAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~G~iG-~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      -..+++=+||.|.+| .++|+.|+..|++|.++|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            356889999999999 6679999999999999998654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.41  E-value=0.011  Score=41.99  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCEEEEEcCChHHH-HHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGLGRIGM-AVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~G~iG~-~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +++|=+||-|.+|. ++|+.|+..|+.|.++|+...
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            36788999999995 789999999999999998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.40  E-value=0.0076  Score=50.12  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=31.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ||+|.|||.|.-|-..|..|+..|++|.+++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999999999999999999998754

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.035  Score=43.89  Aligned_cols=91  Identities=12%  Similarity=0.080  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEec
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVAC  203 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~l  203 (313)
                      +|.|++|+++|=|+ +-++++..+..+|+++.+..+..-...              +  .....++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            37899999999764 557777777889999998876533211              1  123568999999999998876


Q ss_pred             CCChh------------hhcccCHHHHhccCCCcEEEEcC
Q 021388          204 PLTEE------------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       204 p~~~~------------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .....            ....++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            53321            11235677788888888888776

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0067  Score=51.51  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |..|.||++.|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35699999999986 67999999999999999999998754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.34  E-value=0.0066  Score=48.34  Aligned_cols=82  Identities=20%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---CCCH-HH--HhhcCCEEEEecCCChhhh
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---YPSV-VE--LASNCHILVVACPLTEETR  210 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~l-~e--~~~~aDvV~~~lp~~~~t~  210 (313)
                      .|++|.|.|. |.+|+...+.++.+|++|++.++++++..     ++..   +.+. ++  --..+|+|+-+..  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            5789999995 99999999999999999999887654321     2111   1111 11  1234666665443  11  


Q ss_pred             cccCHHHHhccCCCcEEEEcC
Q 021388          211 HIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~  231 (313)
                        + .+.++.++++..++.+|
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              1 34556666666666664

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.30  E-value=0.01  Score=44.32  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      -+++.|||.|.+|-.+|..|+.+|.+|..+.+....
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            378999999999999999999999999999987653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.28  E-value=0.0096  Score=44.16  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      +++.|||.|.+|-.+|..+..+|.+|..+.+...-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            78999999999999999999999999999877653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.022  Score=45.23  Aligned_cols=61  Identities=8%  Similarity=-0.008  Sum_probs=41.7

Q ss_pred             CEEEEEcCChHH--HHHHHHHHhC---C-CCEEEecCCCCCcc---------------c----cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGLGRIG--MAVAKRAEAF---S-CPINYYSRTEKPNL---------------K----YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~G~iG--~~iA~~l~~~---G-~~V~~~~~~~~~~~---------------~----~~~~~~l~e~~~~aDvV  199 (313)
                      .+|.|||.|+.|  ..++..++..   . -++..+|..++...               +    ....++..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            489999999876  4555555532   2 37889998764311               0    11235778889999999


Q ss_pred             EEecCC
Q 021388          200 VVACPL  205 (313)
Q Consensus       200 ~~~lp~  205 (313)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.27  E-value=0.012  Score=50.01  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|+||++-|.| .+.||+++|+.|...|++|...+|+++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998 567999999999999999999998754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.26  E-value=0.031  Score=44.48  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|+++++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            467899999999999999999999996 69999988764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.23  E-value=0.0064  Score=48.31  Aligned_cols=85  Identities=18%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCcc-----ccc----c-CCCHHHHhh-----cCCEEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNL-----KYK----Y-YPSVVELAS-----NCHILVVACPLT  206 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~-----~~~----~-~~~l~e~~~-----~aDvV~~~lp~~  206 (313)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++++..     +..    . .+..++..+     ..|+|+-++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            478999999999999999999999975 677777654211     111    0 111222222     257776666532


Q ss_pred             hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          207 EETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       207 ~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      . +   + +..+..++++..++.+|-
T Consensus       112 ~-~---~-~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         112 A-T---V-DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             H-H---H-HHGGGGEEEEEEEEECCC
T ss_pred             h-H---H-HHHHHHHhCCCEEEEEeC
Confidence            2 1   1 345666777777777653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.011  Score=43.81  Aligned_cols=35  Identities=17%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      +++.|||.|.+|-.+|..++.+|.+|..+++.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999987653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.14  E-value=0.024  Score=44.24  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCCCcc------------ccccCCCHHHHhhcCCEEEEecC
Q 021388          142 FTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEKPNL------------KYKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       142 l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      |.|++|++||=   +++.++++..+..||+++....+......            ......++++.++.+|+|.....
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            78999999998   68999999999999999998876533211            11235689999999999877654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.012  Score=49.33  Aligned_cols=40  Identities=18%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          140 TKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       140 ~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      ++|+||++-|.|.+. ||+++|+.|...|++|+..+|+.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            368999999997765 9999999999999999999987653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0085  Score=50.66  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|-|.+. ||+++|+.+...|++|+..+|+.+
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            59999999998876 999999999999999999999765

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.058  Score=41.73  Aligned_cols=102  Identities=18%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhC---C-CCEEEecCCCCC--ccccc-----cC-CCHHHHhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAF---S-CPINYYSRTEKP--NLKYK-----YY-PSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~---G-~~V~~~~~~~~~--~~~~~-----~~-~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      |+|||||. |.+|+.+.++|...   - .++..+..+...  .....     .. ..-.+.++.+|++++++|.... ..
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s-~~   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT-NE   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH-HH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH-HH
Confidence            58999987 99999999876532   2 245555433221  11110     01 1112357899999999984322 22


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCcc-----------ccHHHHHHHHHhCC
Q 021388          212 IINREVIDALGPKGVLINIGRGPH-----------VDERELVSALVEGR  249 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~~-----------vd~~al~~al~~~~  249 (313)
                      +  ...+..-+.+.++||.|..-=           |+.+.|..++++|.
T Consensus        81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            2  222222334467888884322           35567777777654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.97  E-value=0.014  Score=46.59  Aligned_cols=30  Identities=30%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC-CCEEEec
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS-CPINYYS  174 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~  174 (313)
                      ++|||-|+|+||+.+.+.+...+ ++|...+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaIn   32 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEe
Confidence            48999999999999999887654 5665543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.028  Score=51.37  Aligned_cols=96  Identities=21%  Similarity=0.227  Sum_probs=62.8

Q ss_pred             HhcCCCCCCCccccc-----ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC-------------Cccc----
Q 021388          126 VRSGKWKKGDYKLTT-----KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK-------------PNLK----  182 (313)
Q Consensus       126 ~~~~~w~~~~~~~~~-----~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~-------------~~~~----  182 (313)
                      .|.|.+.+..+..+.     .|++++|.|||+|.+|..+++.|...|. ++..+|...=             ...|    
T Consensus        14 ~r~~~~~~~~~~~~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka   93 (426)
T d1yovb1          14 ERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA   93 (426)
T ss_dssp             HSCCTTCCTTCCCCSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hcCCCCcCcccccChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHH
Confidence            455655543332222     3788999999999999999999999998 6888875321             0001    


Q ss_pred             -------------c--c-----cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccC
Q 021388          183 -------------Y--K-----YYPSVVELASNCHILVVACPLTEETRHIINREVIDALG  222 (313)
Q Consensus       183 -------------~--~-----~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk  222 (313)
                                   .  .     .....+++++++|+|+.++- +..++..+++..+...+
T Consensus        94 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1          94 EVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             HHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence                         0  0     01122467899999987775 56678788776665443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.95  E-value=0.016  Score=49.11  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-C--hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGL-G--RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~-G--~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |+||++.|.|. |  .||.++|+.|...|++|...+|+.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            89999999996 4  4999999999999999999998743

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.94  E-value=0.035  Score=40.66  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=46.4

Q ss_pred             CCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCcc---ccccCCCHHHHhhcCCEEEEe
Q 021388          144 GKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNL---KYKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       144 g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .++|||+|+          .+-.-.+.+.|+..|++|.+|||......   ......++++++..+|+|++.
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~   86 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTN   86 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEc
Confidence            368999998          44678899999999999999999875432   223456899999999987654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.90  E-value=0.015  Score=45.13  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC--CEEEecCCCCC--ccc----------cc--------cCCCHHHHhhcCCEEEE
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC--PINYYSRTEKP--NLK----------YK--------YYPSVVELASNCHILVV  201 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~--~V~~~~~~~~~--~~~----------~~--------~~~~l~e~~~~aDvV~~  201 (313)
                      ++|+||| .|.+|+.+|-.+...|.  ++..+|+.+..  ..+          ..        ...+..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            4799999 59999999999998885  78899876531  110          00        01123357889999999


Q ss_pred             ec
Q 021388          202 AC  203 (313)
Q Consensus       202 ~l  203 (313)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.90  E-value=0.012  Score=44.27  Aligned_cols=32  Identities=9%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      +++.|||.|.||-.+|..++.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999988764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.016  Score=43.59  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      |++.|||.|.+|-.+|..++.+|.+|..+.+....
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            78999999999999999999999999999987653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.87  E-value=0.018  Score=42.63  Aligned_cols=37  Identities=22%  Similarity=0.130  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..++++.|||.|.+|-.+|..|+.+|.+|..+.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            4579999999999999999999999999999988754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.87  E-value=0.015  Score=43.38  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +++.|||-|.||-.+|..++.+|.+|..+.+...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            7899999999999999999999999999887654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.02  Score=46.02  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ....+|+|+|||-|..|-..|..|+..|++|.+|++...
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            346789999999999999999999999999999998764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.78  E-value=0.013  Score=49.47  Aligned_cols=39  Identities=18%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+|.||++.|.|.+   .||+++|+.|...|++|.+.+++.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            46999999999975   4999999999999999988887643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.78  E-value=0.0091  Score=50.79  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|.|.+ .||+++|+.|...|++|...+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999876 5999999999999999999998764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.73  E-value=0.011  Score=44.51  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=33.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN  180 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~  180 (313)
                      +++.|||.|.||-.+|..+..+|++|.++.+.+...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            789999999999999999999999999999876543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0096  Score=47.24  Aligned_cols=85  Identities=16%  Similarity=0.112  Sum_probs=52.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHh-CCCCEE-EecCCCCCcc-------------ccccCCCHHHHhhcCCEEEEecCCChh
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEA-FSCPIN-YYSRTEKPNL-------------KYKYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~~-------------~~~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      .+|+|+|+ |+||+.+++.+.. -++++. ++++...+..             +.....++++++..+|+|+=-.. .+.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~~   83 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEG   83 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HHH
Confidence            47999995 9999999998875 467754 5666443211             12234567788899998876543 123


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                      +...+ +   ...+.+.-+|-..+|=
T Consensus        84 ~~~~~-~---~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          84 TLNHL-A---FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             HHHHH-H---HHHHTTCEEEECCCCC
T ss_pred             HHHHH-H---HHHhccceeEEecCCC
Confidence            33222 1   1233455566666773

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.65  E-value=0.02  Score=42.81  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .++++.|||.|.+|-.+|..|+..|.+|..+++....
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            3589999999999999999999999999999987653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.64  E-value=0.006  Score=46.14  Aligned_cols=82  Identities=10%  Similarity=0.022  Sum_probs=50.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----cCCC---HHH-HhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----YYPS---VVE-LASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e-~~~~aDvV~~~lp~~~~t~~  211 (313)
                      |++-|+|+|.+|+.+++.|++.  .|.+.+..++..     .+..    ...+   |.+ -+.+|+.++++.+....+. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~-   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI-   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH-
Confidence            5688999999999999999755  566666665421     1111    1122   222 2678999998887554433 


Q ss_pred             ccCHHHHhccCCCc-EEEEc
Q 021388          212 IINREVIDALGPKG-VLINI  230 (313)
Q Consensus       212 li~~~~l~~mk~ga-~lIn~  230 (313)
                       .-...+..+.|.. +++-+
T Consensus        78 -~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 -HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             -HHHHHHHHHCSSSCEEEEC
T ss_pred             -HHHHHHHHHCCCceEEEEE
Confidence             3344455565553 44443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.64  E-value=0.021  Score=42.81  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..++++.|||.|.+|-.+|..++..|.+|.++++...
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3568999999999999999999999999999987654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.63  E-value=0.026  Score=45.07  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHhC-CCCEEEe-cCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAF-SCPINYY-SRTE  177 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~~~-~~~~  177 (313)
                      .+|||.|+|+||+.+.+.+... .++|... |+.+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~   37 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP   37 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCC
Confidence            4899999999999999988753 3565544 4443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.035  Score=43.01  Aligned_cols=88  Identities=15%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHH-h--CCCCEEEecCCCCCccc-------c--c------cCCCHHHHhhcCCEEEEecC-
Q 021388          145 KTVGIIGL-GRIGMAVAKRAE-A--FSCPINYYSRTEKPNLK-------Y--K------YYPSVVELASNCHILVVACP-  204 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~-~--~G~~V~~~~~~~~~~~~-------~--~------~~~~l~e~~~~aDvV~~~lp-  204 (313)
                      ++|+|||. |.+|..+|-.|+ .  ++-++..+|..+.. .+       .  .      ...+..+.+++||+|+++.- 
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence            58999995 999999998875 3  45578999975431 11       0  0      11233456889999999873 


Q ss_pred             -CChh-hhc-cc--C-------HHHHhccCCCcEEEEcCCC
Q 021388          205 -LTEE-TRH-II--N-------REVIDALGPKGVLINIGRG  233 (313)
Q Consensus       205 -~~~~-t~~-li--~-------~~~l~~mk~ga~lIn~~rg  233 (313)
                       ..+. ++. ++  |       .+.+....|.+++|.++..
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence             2221 211 11  1       1234445688999998754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.60  E-value=0.052  Score=47.04  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|-|.+. ||+++|+.|...|++|.+.|+..+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            58999999987764 999999999999999999988754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.58  E-value=0.038  Score=46.30  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4889999999864 5999999999999999999998754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.032  Score=46.77  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++-|.|.+ .||+++|+.|...|++|++.+|+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            5899999999765 5999999999999999999998754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.40  E-value=0.016  Score=48.88  Aligned_cols=38  Identities=16%  Similarity=0.202  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|-|. +.||+++|+.|...|++|.+.+|+++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999987 45999999999999999999998764

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.37  E-value=0.11  Score=42.15  Aligned_cols=130  Identities=12%  Similarity=0.131  Sum_probs=84.3

Q ss_pred             HHHHHHHhCCCCEEEecCCCC---------CccccccCCCHHHHhhcCCEEEEe-cCCChhhhcccCHHHHhccCCCcEE
Q 021388          158 AVAKRAEAFSCPINYYSRTEK---------PNLKYKYYPSVVELASNCHILVVA-CPLTEETRHIINREVIDALGPKGVL  227 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~---------~~~~~~~~~~l~e~~~~aDvV~~~-lp~~~~t~~li~~~~l~~mk~ga~l  227 (313)
                      ..++.|...|++|++=.-...         ...|+....+.++++.++|+|+.. .|...+    .+.+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            578889999999997543222         122344456778999999987654 353322    234578899999999


Q ss_pred             EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388          228 INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF  303 (313)
Q Consensus       228 In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~  303 (313)
                      |..--  .....++.++|.+.++...++|....-    ..-..+|      ..++.+.=+-.+....+..|+-+|+
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~ipRi----sraQ~md------~Lssqa~iaG~~a~~~~a~~l~~~~  160 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELMPRI----SRAQSMD------ILSSQSNLVAADASPLFAKNLLNFL  160 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGCCCS----GGGGGGC------HHHHHHHHGHHHHHHHHHHHHHHHH
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeeccccc----CCCCccC------CcCcchhhhhHhHHHHHHHHHHhhh
Confidence            98754  456778999999999998888875211    1111122      1222222233566667888888877

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.015  Score=48.90  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++-|-|. +.||+++|+.|...|++|...+|+++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            378999988875 46999999999999999999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.36  E-value=0.021  Score=44.24  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~  178 (313)
                      +||+|.|||-|..|-.+|..|+.+|.  +|+++++.+.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            58999999999999999999998874  6888887653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.33  E-value=0.011  Score=49.82  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|.+. ||+++|+.|...|++|...+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998776 999999999999999999988764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.27  E-value=0.021  Score=43.00  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+++.|||.|.||-.+|..++.+|.+|..+.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            37899999999999999999999999999988764

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.072  Score=41.54  Aligned_cols=90  Identities=11%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHHhCCCC-EEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCC
Q 021388          142 FTGKTVGIIGL---GRIGMAVAKRAEAFSCP-INYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPL  205 (313)
Q Consensus       142 l~g~~igiiG~---G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~  205 (313)
                      +.|.+|++||=   |++..+++..+..+|.. +.+..+......          +  .....++++.++++|+|...-..
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            68999999996   66999999999999865 455554322111          1  22356888999999998765332


Q ss_pred             Chh----------hhcccCHHHHhccCCCcEEEEcC
Q 021388          206 TEE----------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       206 ~~~----------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .+.          ....++++.++.++++++|.-+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            111          11223556666677777766654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.19  E-value=0.039  Score=46.19  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|.|.+ .||+++|+.|...|++|.+.+|+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999865 6999999999999999999998754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.19  E-value=0.032  Score=47.20  Aligned_cols=38  Identities=29%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|-|.+ .||+++|+.|...|++|.+.+++.+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3789999999876 5999999999999999999998764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.16  E-value=0.031  Score=43.14  Aligned_cols=88  Identities=15%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCC--CEEEecCCCCC--ccc----------c----c-cCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSC--PINYYSRTEKP--NLK----------Y----K-YYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~--~V~~~~~~~~~--~~~----------~----~-~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+|+||| .|.+|+.+|-.+...|.  ++..+|.....  ..+          +    . ...+. +.++.||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            4899999 69999999999987776  68889864321  110          0    0 11233 44689999998863


Q ss_pred             --CChh-hhc-cc--CH-------HHHhccCCCcEEEEcCCC
Q 021388          205 --LTEE-TRH-II--NR-------EVIDALGPKGVLINIGRG  233 (313)
Q Consensus       205 --~~~~-t~~-li--~~-------~~l~~mk~ga~lIn~~rg  233 (313)
                        ..+. ++. ++  |.       ..+....|.++++.++..
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP  121 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP  121 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence              2221 211 11  11       234445678899888543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.14  E-value=0.013  Score=49.86  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|.+ .||+++|+.|...|++|...+++.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999875 5999999999999999999998754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.13  E-value=0.032  Score=44.32  Aligned_cols=61  Identities=8%  Similarity=0.039  Sum_probs=41.4

Q ss_pred             CCEEEEEcCChHHHHH--HHHHHh-CC---CCEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEE
Q 021388          144 GKTVGIIGLGRIGMAV--AKRAEA-FS---CPINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       144 g~~igiiG~G~iG~~i--A~~l~~-~G---~~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~  200 (313)
                      .-+|+|||.|+.|...  ...++. ..   -++..+|..++....                 .....+..|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            3489999999988653  333332 22   368899987753211                 112457889999999999


Q ss_pred             EecC
Q 021388          201 VACP  204 (313)
Q Consensus       201 ~~lp  204 (313)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9974

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.10  E-value=0.057  Score=45.43  Aligned_cols=64  Identities=19%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------ccc-------cCCCHHHHhhcCCEEEEe
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------KYK-------YYPSVVELASNCHILVVA  202 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~~~-------~~~~l~e~~~~aDvV~~~  202 (313)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|+.....             ++.       ...++.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            35799999 599999999999999999999998654211             111       112345677888888887


Q ss_pred             cCCCh
Q 021388          203 CPLTE  207 (313)
Q Consensus       203 lp~~~  207 (313)
                      .+...
T Consensus        83 ~~~~~   87 (312)
T d1qyda_          83 LAGGV   87 (312)
T ss_dssp             CCCSS
T ss_pred             hhhcc
Confidence            76443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.08  E-value=0.074  Score=42.02  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|+++++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            467899999999999999999999997 58888887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.06  E-value=0.025  Score=41.63  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      +++.|||.|.+|-.+|..++.+|.+|..+++.+..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            78999999999999999999999999999887653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.02  E-value=0.028  Score=47.24  Aligned_cols=38  Identities=24%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|.|.+ .||+++|+.|...|++|.+.++++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4899999999875 5999999999999999999998764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.01  E-value=0.033  Score=46.00  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..++|.|||.|..|..+|..|+..|++|.++++++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.93  E-value=0.029  Score=45.95  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ..++|.|||.|.+|-..|..|+..|++|.++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34689999999999999999999999999999753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.88  E-value=0.018  Score=48.86  Aligned_cols=41  Identities=27%  Similarity=0.379  Sum_probs=35.6

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      ..+|.||++.|-|.+. ||+++|+.|...|++|.+.+|+.+.
T Consensus         4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3468999999998765 9999999999999999999987653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.84  E-value=0.034  Score=41.40  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++++.|||.|.+|-.+|..|..+|.+|..+++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            36899999999999999999999999999987654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.84  E-value=0.077  Score=40.80  Aligned_cols=84  Identities=13%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCC---CCEEEecCCCC--Cccccc----cCCC-HHHHhhcCCEEEEecCCChhhhccc
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFS---CPINYYSRTEK--PNLKYK----YYPS-VVELASNCHILVVACPLTEETRHII  213 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G---~~V~~~~~~~~--~~~~~~----~~~~-l~e~~~~aDvV~~~lp~~~~t~~li  213 (313)
                      .+|||||. |..|+.+.+.|...+   .++..+..+..  +.....    ...+ ..+.+.++|++++++|... +..+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence            58999987 999999999997543   35655432221  111100    0111 2234678999999998432 22221


Q ss_pred             CHHHHhccCCCcEEEEcCCC
Q 021388          214 NREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       214 ~~~~l~~mk~ga~lIn~~rg  233 (313)
                       .   ...+.|..+||.|..
T Consensus        82 -~---~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          82 -E---RARAAGCSVIDLSGA   97 (144)
T ss_dssp             -H---HHHHTTCEEEETTCT
T ss_pred             -c---ccccCCceEEeechh
Confidence             2   224578999997743

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.83  E-value=0.025  Score=44.85  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.+|.|.| .|.+|...++.++.+|++|++..++++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~   61 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   61 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccc
Confidence            467999988 599999999999999999998876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.81  E-value=0.041  Score=41.68  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .++++.|||-|.+|-.+|..++..|.+|.++++....
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            4689999999999999999999999999999987653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.69  E-value=0.026  Score=47.67  Aligned_cols=38  Identities=18%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|-|.+ .||+++|+.|...|++|.+.+|+.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999875 5999999999999999999998754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.65  E-value=0.051  Score=45.33  Aligned_cols=40  Identities=25%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPN  180 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~  180 (313)
                      +|.||++-|-|.+ .||+++|+.|...|++|.+.+|+.+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            5899999999877 599999999999999999999877644

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.64  E-value=0.025  Score=47.75  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ..|+|.|||.|..|-..|..|+..|++|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            44799999999999999999999999999999754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.64  E-value=0.028  Score=48.04  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|-|. +.||+++|+.|...|++|...+|+++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999986 58999999999999999999998754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.59  E-value=0.063  Score=45.44  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|.+ .||+++|+.|...|++|...+++.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999855 5999999999999999999998754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.57  E-value=0.019  Score=48.56  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|.|.+ .||+++|+.|...|++|...+++++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999855 5999999999999999999998754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.56  E-value=0.045  Score=46.02  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999985 56999999999999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.55  E-value=0.022  Score=48.35  Aligned_cols=38  Identities=21%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++.|-|.+ .||+++|+.|...|++|.+.+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999876 5999999999999999999998754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.46  E-value=0.018  Score=49.04  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=35.3

Q ss_pred             cccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          138 LTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       138 ~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ...+|.||++.|-| .+.||+++|+.|...|++|++.+++..
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            34569999999998 678999999999999999998877643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.43  E-value=0.024  Score=47.96  Aligned_cols=38  Identities=24%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++-|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999977 67999999999999999999998754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.045  Score=45.69  Aligned_cols=37  Identities=16%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcCCh---HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGLGR---IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~G~---iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.||++-|.|.+.   ||+++|+.|...|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            8899999999764   999999999999999998888744

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.043  Score=46.34  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..|+||++-|.|.+ .||+++|+.|...|++|.+.+|+++
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34999999999765 6999999999999999999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.29  E-value=0.11  Score=43.12  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|+|.|.|. |.+|+.+++.|...|++|.+++|...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            478999985 99999999999999999999998754

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=93.28  E-value=0.26  Score=37.95  Aligned_cols=102  Identities=16%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhC-C---CCEEEecCCCC--Cccccc-----c-CCCHHHHhhcCCEEEEecCCChhhhc
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAF-S---CPINYYSRTEK--PNLKYK-----Y-YPSVVELASNCHILVVACPLTEETRH  211 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~-G---~~V~~~~~~~~--~~~~~~-----~-~~~l~e~~~~aDvV~~~lp~~~~t~~  211 (313)
                      ++||||| .|-.|+.+.++|... .   .++..+..+..  +.....     . ...-.+.++++|+|++|+|... +..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence            4799997 699999999987642 2   34444432221  111110     0 1112345789999999999432 222


Q ss_pred             ccCHHHHhccCCCcEEEEcCCCc-----------cccHHHHHHHHHhCC
Q 021388          212 IINREVIDALGPKGVLINIGRGP-----------HVDERELVSALVEGR  249 (313)
Q Consensus       212 li~~~~l~~mk~ga~lIn~~rg~-----------~vd~~al~~al~~~~  249 (313)
                      +. ..+ ..-..+.++||.|..=           =++.+.+.+++++|.
T Consensus        80 ~~-~~l-~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 VY-PAL-RQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             HH-HHH-HHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             Hh-HHH-HHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            21 222 2223346788887422           145556666666654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.27  E-value=0.13  Score=43.10  Aligned_cols=38  Identities=13%  Similarity=0.041  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++-|-|.+ .||.++|+.+.+.|++|++..|+.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            5899999999877 5999999999999999887766544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.26  E-value=0.12  Score=43.19  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.||++.|-| -+.||+++|+.|...|++|.+.+++.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            8899999998 567999999999999999999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.25  E-value=0.042  Score=47.80  Aligned_cols=35  Identities=14%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|+|.|||.|..|..+|..|+..|.+|.+++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            58999999999999999999999999999987654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.19  Score=39.86  Aligned_cols=91  Identities=8%  Similarity=-0.002  Sum_probs=63.3

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEe
Q 021388          141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVA  202 (313)
Q Consensus       141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~  202 (313)
                      .+.|.+|+++|=|  ++..+++..+..||+++.+..|..-...              +  .....++++.++.+|+|..-
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4778999999955  7999999999999999998887432111              1  12356899999999999775


Q ss_pred             cCCChh--------------hhcccCHHHHhccCCCcEEEEcC
Q 021388          203 CPLTEE--------------TRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       203 lp~~~~--------------t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      .-....              ....++.......+++++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            532110              11223444555678888888776

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.099  Score=45.03  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|.+ .||+++|+.|...|++|.+.+|+.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5999999999865 5999999999999999999998754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.23  E-value=0.18  Score=39.37  Aligned_cols=38  Identities=24%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      -.|.+|.|+|.|.+|...+..++.+|. +|++.++++++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            367899999999999999999999996 68888887654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.028  Score=47.77  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            49999999998765 999999999999999999998764

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.17  E-value=0.051  Score=45.20  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             CEEEEEcCChHH----HHHHHHHHhC--CCCEE-EecCCCCCcc---------ccccCCCHHHHhh--cCCEEEEecCCC
Q 021388          145 KTVGIIGLGRIG----MAVAKRAEAF--SCPIN-YYSRTEKPNL---------KYKYYPSVVELAS--NCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~G~iG----~~iA~~l~~~--G~~V~-~~~~~~~~~~---------~~~~~~~l~e~~~--~aDvV~~~lp~~  206 (313)
                      .+|||||+|.+|    +.-...++..  ++++. ++|++.+...         ....+.++++++.  +-|+|++++|..
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence            589999999754    4444455554  56766 6788764311         1223578999885  477999999844


Q ss_pred             h
Q 021388          207 E  207 (313)
Q Consensus       207 ~  207 (313)
                      .
T Consensus        97 ~   97 (237)
T d2nvwa1          97 E   97 (237)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.98  E-value=0.043  Score=45.25  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ++|.|||.|..|...|..|+..|++|.+++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4699999999999999999999999999987643

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=92.94  E-value=0.13  Score=43.31  Aligned_cols=99  Identities=12%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhcc
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL  221 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~m  221 (313)
                      ..|++|++||+-    +..+.++..|+++.+++++++..  .......++++.+||+|++.-.  .-..+-+ ..+|++.
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~g--d~p~~~~~~lLp~aD~viiTGs--TlvN~Tl-~~LL~~~  190 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEG--DYPLPASEFILPECDYVYITCA--SVVDKTL-PRLLELS  190 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTT--CEEGGGHHHHGGGCSEEEEETH--HHHHTCH-HHHHHHT
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCC--CCCchHHHHhhhcCCEEEEEec--hhhcCCH-HHHHHhC
Confidence            579999999874    56667788889999999987532  2222335678888998877532  1111222 5577777


Q ss_pred             CCCcEEEEcCCC------------------ccccHHHHHHHHHhCC
Q 021388          222 GPKGVLINIGRG------------------PHVDERELVSALVEGR  249 (313)
Q Consensus       222 k~ga~lIn~~rg------------------~~vd~~al~~al~~~~  249 (313)
                      |+...+|=+|=.                  .++|.+.+.+.+.+|.
T Consensus       191 ~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         191 RNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             TTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             CcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            777666544422                  2366777777776664

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.91  E-value=0.048  Score=41.23  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEE-EecC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPIN-YYSR  175 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~-~~~~  175 (313)
                      ++|||+|+ |+||+.+++.+...|+++. .+|+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~   33 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   33 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence            47999996 9999999999999999865 4454

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.83  E-value=0.024  Score=48.21  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+|.||++-|.|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4699999999875 67999999999999999999888754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.76  E-value=0.038  Score=43.25  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCC-CEEEecCCCCCcc-----ccc-----cCCCH-HHHh-----hcCCEEEEecC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSC-PINYYSRTEKPNL-----KYK-----YYPSV-VELA-----SNCHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-----~~~-----~~~~l-~e~~-----~~aDvV~~~lp  204 (313)
                      .|.++.|+|. |.+|...++.++..|. +|++.++++++..     ++.     ...+. +++.     ...|+++-+..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            4679999995 9999999999999896 7888887764321     211     11122 2222     12666666554


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcC
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIG  231 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~  231 (313)
                      . +.+-    +..+..++++..++.+|
T Consensus       107 ~-~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 S-EKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             C-HHHH----TTGGGGEEEEEEEEECC
T ss_pred             c-chHH----HhhhhhcccCCEEEEec
Confidence            2 2221    23456677777777664

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.093  Score=45.93  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=27.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |.+-|.| .|-||+.+++.|...|++|++.||..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4555777 89999999999999999999999853

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.74  E-value=0.064  Score=46.65  Aligned_cols=64  Identities=17%  Similarity=0.242  Sum_probs=46.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc--------ccc-----cCC---CHHHHhhcCCEEEEecCC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------KYK-----YYP---SVVELASNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~~-----~~~---~l~e~~~~aDvV~~~lp~  205 (313)
                      +.|+|.|+| .|.||+.+++.|.+.|++|.+..|++....        ++.     ...   .++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            358999998 599999999999999999999988654311        111     111   245678888988877654


Q ss_pred             C
Q 021388          206 T  206 (313)
Q Consensus       206 ~  206 (313)
                      .
T Consensus        82 ~   82 (350)
T d1xgka_          82 Q   82 (350)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.68  E-value=0.066  Score=44.04  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .-.+++|.|||.|..|-..|..|+..|++|.++++...
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            45889999999999999999999999999999987654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.54  E-value=0.5  Score=37.33  Aligned_cols=91  Identities=23%  Similarity=0.370  Sum_probs=56.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCC-CCEEEe-cCCCC-Cccc----------cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFS-CPINYY-SRTEK-PNLK----------YKYYPSVVELASNCHILVVACPLTEETR  210 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G-~~V~~~-~~~~~-~~~~----------~~~~~~l~e~~~~aDvV~~~lp~~~~t~  210 (313)
                      .+|||+| .|-.|+.+.+.|..+- .++... .++.. +...          .....+.+++..++|+|++++|....  
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--   79 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--   79 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence            3799997 5899999999998753 355444 22221 1110          01134667778899999999996543  


Q ss_pred             cccCHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388          211 HIINREVIDALGPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~  242 (313)
                          .+..... .+..+||.|-.==.+....+
T Consensus        80 ----~~~~~~~-~~~~VIDlSadfRl~~~~~y  106 (176)
T d1vkna1          80 ----YDLVREL-KGVKIIDLGADFRFDDPGVY  106 (176)
T ss_dssp             ----HHHHTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred             ----HHHHHhh-ccceEEecCccccccchhhH
Confidence                2333333 57899999865444333333

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.49  E-value=0.022  Score=48.26  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCC
Q 021388          142 FTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       142 l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |.||++-|-|.+. ||+++|+.|...|++|.+.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            6889888887655 99999999999999999999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.031  Score=46.74  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT  176 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~  176 (313)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            35999999999999999999999999998 47777743

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.44  E-value=0.026  Score=47.85  Aligned_cols=38  Identities=29%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|+||++.|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998765 999999999999999999998754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.44  E-value=0.08  Score=44.89  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|+||++-|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999876 45999999999999999999998754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.41  E-value=0.061  Score=42.64  Aligned_cols=86  Identities=15%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc-----cCCC-HHHHh-----hcCCEEEEecCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK-----YYPS-VVELA-----SNCHILVVACPL  205 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~-----~~~~-l~e~~-----~~aDvV~~~lp~  205 (313)
                      .|++|.|.|. |.+|...++.++..|++|++.++++++.     .+..     ...+ .+++.     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5789999888 6699999999999999999988776431     1211     1112 22222     34888888775 


Q ss_pred             ChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388          206 TEETRHIINREVIDALGPKGVLINIGRGP  234 (313)
Q Consensus       206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~  234 (313)
                       .++.    ++.++.++++..++.+|..+
T Consensus       108 -~~~~----~~~~~~l~~~G~~v~~G~~~  131 (182)
T d1v3va2         108 -GEFL----NTVLSQMKDFGKIAICGAIS  131 (182)
T ss_dssp             -HHHH----HHHGGGEEEEEEEEECCCGG
T ss_pred             -chhh----hhhhhhccCCCeEEeeccee
Confidence             2221    56788899999999887543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.39  E-value=0.075  Score=44.21  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=41.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhh--cCCEEEEecC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELAS--NCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~--~aDvV~~~lp  204 (313)
                      ++|.|.|. |-||+.+++.|+..|++|++.||..-.   .....+++++++  +.|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---CCCHHHHHHHHHHcCCCEEEeecc
Confidence            57999996 999999999999999999999986532   111223556665  5688765543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.026  Score=47.73  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999764 6999999999999999999998754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.96  E-value=0.079  Score=45.17  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          140 TKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+|.||++.|-| .|.||+++|+.|...|++|++.+|+.+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            479999999997 678999999999999999999998764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.77  E-value=0.072  Score=44.54  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GR--IGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~--iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|. |.  ||+++|+.|...|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            389999999996 54  999999999999999998877654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.73  E-value=0.16  Score=40.20  Aligned_cols=95  Identities=11%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhC-CCCEEEe-cCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAF-SCPINYY-SRTEKPNLK-----------------YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~-G~~V~~~-~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+|+|+| .|-.|+.+.+.|... .+++... .+......+                 .....+.+....++|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4799999 899999999999986 5566543 221111111                 0011234445678999999998


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCCCcccc-HHHHHHH
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGRGPHVD-ERELVSA  244 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd-~~al~~a  244 (313)
                      .....+  +   .-...+.|..+||.|..--.+ .......
T Consensus        82 ~~~s~~--~---~~~~~~~~~~vIDlSadfRl~~~~~~~~~  117 (179)
T d2g17a1          82 HEVSHD--L---APQFLQAGCVVFDLSGAFRVNDRAFYEKY  117 (179)
T ss_dssp             HHHHHH--H---HHHHHHTTCEEEECSSTTSSSCHHHHHHH
T ss_pred             chhHHH--H---hhhhhhcCceeeccccccccccccccccc
Confidence            432211  1   222345789999998655444 4444333

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.72  E-value=0.088  Score=38.07  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ..+..||+|+|||.|+.|..+|.-|...+-++++..++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            456899999999999999999999998887766554443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.095  Score=43.58  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +..+|.|||.|.-|-..|..|+..|++|.++..+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346799999999999999999999999999986543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.57  E-value=0.3  Score=37.77  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.+++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~   64 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH
Confidence            578999999999999999999999986 666666554

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.52  E-value=0.072  Score=42.64  Aligned_cols=60  Identities=22%  Similarity=0.127  Sum_probs=41.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEE--EecCCCCCcc----cc-------ccCCCHHHHhhcCCEEEEecC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPIN--YYSRTEKPNL----KY-------KYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~--~~~~~~~~~~----~~-------~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      +||.|.| .|.||+.+++.|...|++|.  ...|++....    ..       ....++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            5899998 79999999999999997754  4555543211    11       112245667889999876654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.47  E-value=0.1  Score=41.31  Aligned_cols=32  Identities=9%  Similarity=0.066  Sum_probs=29.9

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.|||.|..|...|..|...|.+|++++++..
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            78999999999999999999999999998754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.46  E-value=0.076  Score=44.79  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++.|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488998888875 67999999999999999999998754

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.45  E-value=0.049  Score=45.77  Aligned_cols=38  Identities=26%  Similarity=0.177  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++-|.|. +.||+++|+.|...|++|...+|+.+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            478999999987 47999999999999999999998754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.43  E-value=0.082  Score=44.90  Aligned_cols=38  Identities=29%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             ccccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCC
Q 021388          139 TTKFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       139 ~~~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      ..+|.||++.|-|.+   .||+++|+.|...|++|++.+++
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            346999999999986   59999999999999999887653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.078  Score=44.49  Aligned_cols=37  Identities=19%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +.||++-|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999887 45999999999999999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.16  E-value=0.096  Score=41.74  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE  177 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~  177 (313)
                      +|.|||.|..|-..|..|+..|+ +|.+++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 699998764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.98  E-value=0.24  Score=37.58  Aligned_cols=48  Identities=17%  Similarity=0.355  Sum_probs=32.1

Q ss_pred             EEEEEc-CChHHHHHHHHHH-hCCCCEE-EecCCCCCccccccCCCHHHH-hhcCCEEEEec
Q 021388          146 TVGIIG-LGRIGMAVAKRAE-AFSCPIN-YYSRTEKPNLKYKYYPSVVEL-ASNCHILVVAC  203 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~-~~G~~V~-~~~~~~~~~~~~~~~~~l~e~-~~~aDvV~~~l  203 (313)
                      +|+|+| .|+||+.+++.+. .-++++. ++|+..          ++.++ ...+|+|+=..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------PLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------CTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------chhhhccccCCEEEEcc
Confidence            689999 6999999999875 4567754 556432          22222 25688776543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.95  E-value=0.21  Score=43.29  Aligned_cols=61  Identities=10%  Similarity=0.134  Sum_probs=43.7

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccc-------cc--cCC---CHHHHhhcCCEEEEec
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-------YK--YYP---SVVELASNCHILVVAC  203 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-------~~--~~~---~l~e~~~~aDvV~~~l  203 (313)
                      .+++|.|.| .|-||+.+++.|...|++|+++|+.......       +.  ...   .+.++++..|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            788999986 8999999999999999999999865442110       00  112   2344667899876554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.93  E-value=0.056  Score=45.44  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=27.8

Q ss_pred             CEEEEE-cC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          145 KTVGII-GL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       145 ~~igii-G~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |+|++| |. +.||+++|+.|...|++|...+|+++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456555 54 56999999999999999999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.69  E-value=0.13  Score=44.32  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=33.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+||+|-|.| .|-||+.+++.|...|++|.+++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999998 789999999999999999999998765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.66  E-value=0.13  Score=42.50  Aligned_cols=62  Identities=21%  Similarity=0.187  Sum_probs=45.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--c-----cccCCCHH---HHhhcCCEEEEec
Q 021388          142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--K-----YKYYPSVV---ELASNCHILVVAC  203 (313)
Q Consensus       142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~-----~~~~~~l~---e~~~~aDvV~~~l  203 (313)
                      |+||++.|.|. +.||+++|+.|...|++|.+.+|+.+...  +     .......+   +-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999987 55999999999999999999998764211  1     11112333   3456789988775

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.65  E-value=0.2  Score=39.75  Aligned_cols=84  Identities=13%  Similarity=0.147  Sum_probs=53.1

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHHhCCCCEEEecCCCCCc---------ccccc--------CCC----HHHHh----hc
Q 021388          143 TGKTVGII--GLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKY--------YPS----VVELA----SN  195 (313)
Q Consensus       143 ~g~~igii--G~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~--------~~~----l~e~~----~~  195 (313)
                      .|+++.|+  |.|.+|....+.++.+|++|++..++.+..         .++..        ..+    ..++.    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            46788888  679999999999999999998876554321         12111        011    11111    23


Q ss_pred             CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                      .|+++-++. .+.     ....+..|+++..+|.+|.
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEECC
Confidence            677776664 111     1456778888888888763

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.59  E-value=0.43  Score=37.62  Aligned_cols=97  Identities=8%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHh---CCC----CEEEecCCCCCc--cc---------------cccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEA---FSC----PINYYSRTEKPN--LK---------------YKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~---~G~----~V~~~~~~~~~~--~~---------------~~~~~~l~e~~~~aDvV  199 (313)
                      .+|.|+|. |.||..++-+|..   ||.    .+..+|......  .+               .....+..+.++++|+|
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvV  104 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA  104 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceE
Confidence            48999996 9999999999875   454    344566554311  00               11245788899999999


Q ss_pred             EEecCCC--h-hhhc-c-------c---CHHHHhccCCCcEEEEcCCCccccHHHHHH
Q 021388          200 VVACPLT--E-ETRH-I-------I---NREVIDALGPKGVLINIGRGPHVDERELVS  243 (313)
Q Consensus       200 ~~~lp~~--~-~t~~-l-------i---~~~~l~~mk~ga~lIn~~rg~~vd~~al~~  243 (313)
                      ++.....  + .++. +       +   .+..-+..+++++++=++.  .+|.-+.+.
T Consensus       105 vi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         105 LLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             EEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            9886322  1 1111 1       1   1122233466777777754  688877764

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.56  E-value=0.11  Score=40.13  Aligned_cols=85  Identities=18%  Similarity=0.212  Sum_probs=51.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCC---CEEEecCCCC--Cccc-----cccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSC---PINYYSRTEK--PNLK-----YKYYPSVVELASNCHILVVACPLTEETRHI  212 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~---~V~~~~~~~~--~~~~-----~~~~~~l~e~~~~aDvV~~~lp~~~~t~~l  212 (313)
                      |=+|||||. |-.|+.+.+.|....+   ++.++..+..  +...     .......++...+.|++++++|... +...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence            448999998 9999999999987654   3334432211  1110     0111223455678999999998322 2212


Q ss_pred             cCHHHHhccCCCcEEEEcCCC
Q 021388          213 INREVIDALGPKGVLINIGRG  233 (313)
Q Consensus       213 i~~~~l~~mk~ga~lIn~~rg  233 (313)
                          .....+.|..+||.|..
T Consensus        80 ----~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             ----HHHHHHTTCEEEECSST
T ss_pred             ----HhhhccccceehhcChh
Confidence                22345679999998743

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.29  Score=39.88  Aligned_cols=65  Identities=14%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCC--CEEEecCCCCCccc------------cccCCCHHHHhhcCCEEEEecCCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK------------YKYYPSVVELASNCHILVVACPLT  206 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~------------~~~~~~l~e~~~~aDvV~~~lp~~  206 (313)
                      ..+++|.|.| .|.+|+.+++.|..-|.  +|.+++|++.....            .....++.+.+..+|+++.++..+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            5678999995 79999999999987775  79999886543211            111235666788999998876543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.30  E-value=0.14  Score=44.26  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=29.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEK  178 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~  178 (313)
                      |+|+|||.|..|-.+|..|+..|  .+|.+++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            78999999999999999987655  58999998754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.05  E-value=0.76  Score=35.36  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCC
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKP  179 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~  179 (313)
                      -.|.+|.|+|.|.+|...+..++..|.. |++.|+++++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            4678999999999999999999988885 7888887653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.99  E-value=0.15  Score=42.14  Aligned_cols=31  Identities=23%  Similarity=0.198  Sum_probs=29.3

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |.|||.|.+|.++|..|...|.+|+++++..
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.31  Score=40.34  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=32.6

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.||++-|.| -+.||+++|+.|...|++|++.+|+++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            8899988875 567999999999999999999998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.86  E-value=0.16  Score=41.13  Aligned_cols=33  Identities=15%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             EEEEEcCChHHHHHHHHHH--hCCCCEEEecCCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAE--AFSCPINYYSRTEK  178 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~--~~G~~V~~~~~~~~  178 (313)
                      +|+|||.|..|...|..|+  .+|++|.+|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            7999999999999999885  46889999997654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.13  Score=40.19  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .|++|.|.|. |.+|....+.++..|++|++.++++++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH
Confidence            4789999955 459999999999999999999887653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.77  E-value=0.15  Score=39.57  Aligned_cols=31  Identities=29%  Similarity=0.241  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEe
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYY  173 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~  173 (313)
                      .+++|.|||-|.+|-.+|..|+.+|.+|.+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4679999999999999999999999886554

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.57  E-value=0.52  Score=37.80  Aligned_cols=92  Identities=12%  Similarity=0.044  Sum_probs=63.6

Q ss_pred             HHHHHHHhCCCCEEEecCCCCC---------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388          158 AVAKRAEAFSCPINYYSRTEKP---------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI  228 (313)
Q Consensus       158 ~iA~~l~~~G~~V~~~~~~~~~---------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI  228 (313)
                      ..++.|...|++|++=.-....         ..|+....+.+++. ++|+|+..-|.+        .+.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            5678888999999975432221         11333445666766 589886554422        34678899999998


Q ss_pred             EcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388          229 NIGRGPHVDERELVSALVEGRLGGAGLDVFEN  260 (313)
Q Consensus       229 n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~  260 (313)
                      -.-..  ....+++++|.++++...++|....
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence            87654  3456899999999999888887644

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.52  E-value=0.12  Score=40.03  Aligned_cols=59  Identities=10%  Similarity=-0.007  Sum_probs=41.2

Q ss_pred             EEEEEc-CChHHHHHHHHHHhCCC-------CEEEecCCCCCcc-----------c------cccCCCHHHHhhcCCEEE
Q 021388          146 TVGIIG-LGRIGMAVAKRAEAFSC-------PINYYSRTEKPNL-----------K------YKYYPSVVELASNCHILV  200 (313)
Q Consensus       146 ~igiiG-~G~iG~~iA~~l~~~G~-------~V~~~~~~~~~~~-----------~------~~~~~~l~e~~~~aDvV~  200 (313)
                      +|.||| .|.+|..+|-.|...++       .+..+|.......           .      .....+..+.++++|+|+
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV   84 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI   84 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence            899999 59999999999875332       2556776543210           0      112356788999999999


Q ss_pred             EecC
Q 021388          201 VACP  204 (313)
Q Consensus       201 ~~lp  204 (313)
                      ++..
T Consensus        85 itag   88 (154)
T d5mdha1          85 LVGS   88 (154)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            9863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.45  E-value=0.12  Score=41.59  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|++++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            57899999999999999999999998 5788888764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.39  E-value=0.17  Score=36.82  Aligned_cols=36  Identities=19%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHh---CCCCEEEecCCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEA---FSCPINYYSRTEKP  179 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~---~G~~V~~~~~~~~~  179 (313)
                      .+++.|||-|.+|-.+|..+.+   .|.+|..+.+.+..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            3799999999999999987665   48899998876653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.21  E-value=0.24  Score=37.78  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=31.9

Q ss_pred             cCCCEEEEE--cCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          142 FTGKTVGII--GLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       142 l~g~~igii--G~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ..++.+.|+  |-|.||..+|..|+.+|++|.+..+...
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            456677777  9999999999999999999999988654

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.58  Score=40.04  Aligned_cols=124  Identities=13%  Similarity=0.199  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY  172 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~  172 (313)
                      +|=-+++-+++.+|-.                   +..|...+|.|.|.|.-|-.+|+.+...    |+       +++.
T Consensus         4 Ta~V~lAglinAlki~-------------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~l   64 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI-------------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWM   64 (294)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEE
Confidence            4556777788887633                   3468888999999999999999987654    32       4888


Q ss_pred             ecCCC----CC---ccc----c------ccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHHHh---ccCCCcEEEEc
Q 021388          173 YSRTE----KP---NLK----Y------KYYPSVVELAS--NCHILVVACPLTEETRHIINREVID---ALGPKGVLINI  230 (313)
Q Consensus       173 ~~~~~----~~---~~~----~------~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~l~---~mk~ga~lIn~  230 (313)
                      +|+..    ..   ...    +      ....+|.++++  +.|+++-+..    ..++++++.++   .|.+.+++.=.
T Consensus        65 vD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFaL  140 (294)
T d1pj3a1          65 FDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFAL  140 (294)
T ss_dssp             EETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEEC
T ss_pred             EeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEEc
Confidence            88632    11   000    0      01246888876  7887766542    23567777765   56699999999


Q ss_pred             CCCccc---cHHHHHHHHHhCCee
Q 021388          231 GRGPHV---DERELVSALVEGRLG  251 (313)
Q Consensus       231 ~rg~~v---d~~al~~al~~~~l~  251 (313)
                      |.-..-   ..++.++ ..+|+..
T Consensus       141 SNPt~~~e~~~~~a~~-~t~grai  163 (294)
T d1pj3a1         141 SNPTAQAECTAEEAYT-LTEGRCL  163 (294)
T ss_dssp             CSSGGGCSCCHHHHHH-HTTTCCE
T ss_pred             cCCCCcCCcCHHHHHh-hccCceE
Confidence            987543   2333333 4455554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.09  E-value=0.16  Score=42.44  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      +|.|||.|..|..+|..|+..|.+|.++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            589999999999999999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.91  E-value=0.25  Score=40.57  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .||+|-|.|. |.||+++|+.|...|++|...|+....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999987 569999999999999999988876543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.077  Score=44.91  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHHh-CCCCEEEecCCCCC
Q 021388          143 TGKTVGII--GLGRIGMAVAKRAEA-FSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igii--G~G~iG~~iA~~l~~-~G~~V~~~~~~~~~  179 (313)
                      +||+|+||  |-+.||+++|+.|.. .|++|+..+|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999999  788899999999876 58999999997653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.78  E-value=0.2  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=31.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~  179 (313)
                      .+|.|||.|..|..+|..|+..|. +|.++++++..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            379999999999999999999996 79999987653

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=88.77  E-value=0.59  Score=40.22  Aligned_cols=90  Identities=11%  Similarity=0.189  Sum_probs=59.0

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHHhCC-CCEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecC
Q 021388          141 KFTGKTVGIIGL---GRIGMAVAKRAEAFS-CPINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACP  204 (313)
Q Consensus       141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp  204 (313)
                      .+.|++|+++|-   +++..+++..+..+| +++.+..+..-...          +  .....++++.++++|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            388999999997   788999999999885 67887766432111          1  2235688999999999875432


Q ss_pred             CChh----------hhcccCHHHHhccCCCcEEEEc
Q 021388          205 LTEE----------TRHIINREVIDALGPKGVLINI  230 (313)
Q Consensus       205 ~~~~----------t~~li~~~~l~~mk~ga~lIn~  230 (313)
                      ..+.          ...-++.+.++.++++++|.-+
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc  266 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence            2111          0122456666666666666544

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.21  Score=42.53  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .+.|||.|..|..+|..|+..|.+|.+++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            588999999999999999999999999997654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.58  E-value=0.15  Score=40.17  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +++.|.|||-|..|...|..+..+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            35689999999999999999999999999997643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.48  E-value=0.23  Score=42.51  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ....|.|||.|..|-.+|..|+..|.+|.++++.++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            345699999999999999999999999999987653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.47  E-value=0.16  Score=42.51  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecC
Q 021388          140 TKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSR  175 (313)
Q Consensus       140 ~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~  175 (313)
                      +.|.||++.|.|.+. ||+++|+.|...|++|++..+
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            359999999987654 999999999999999987443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.45  E-value=0.35  Score=35.84  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      -.+||+|+|||.|..+-.-|..|..+.-+|+.+-|+.+
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            36899999999999999999999999999999887664

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.34  E-value=0.23  Score=39.68  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      +.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.21  E-value=0.7  Score=36.54  Aligned_cols=62  Identities=16%  Similarity=0.085  Sum_probs=41.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCccc-c-ccCCCHHH----HhhcCCEEEEecCCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-Y-KYYPSVVE----LASNCHILVVACPLT  206 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-~-~~~~~l~e----~~~~aDvV~~~lp~~  206 (313)
                      |+|.|.|. |.+|+.+++.|...|.  +|....|++..... . ....++.+    +....|.|+.|+..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            79999987 9999999999999897  56666665432211 1 11223333    334579998887544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.04  E-value=0.15  Score=42.59  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      ||.+-|-|. +.||+++|+.|...|++|.+.+|+++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   37 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            555556555 46999999999999999999998754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.97  E-value=0.14  Score=40.66  Aligned_cols=84  Identities=15%  Similarity=0.237  Sum_probs=55.3

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHHhCCCCEE-EecCCCCC------ccccc-----cCCCHHHHhhc-----CCEEEEecC
Q 021388          143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPIN-YYSRTEKP------NLKYK-----YYPSVVELASN-----CHILVVACP  204 (313)
Q Consensus       143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~-~~~~~~~~------~~~~~-----~~~~l~e~~~~-----aDvV~~~lp  204 (313)
                      .+++|.|.| .|.+|...++.++.+|++++ +.+.+.+.      ..++.     ...++.+.+++     .|+|+-++.
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            347899998 59999999999999999754 44544322      11221     12345554444     888887775


Q ss_pred             CChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388          205 LTEETRHIINREVIDALGPKGVLINIGR  232 (313)
Q Consensus       205 ~~~~t~~li~~~~l~~mk~ga~lIn~~r  232 (313)
                        .++    -+..+..++++..++.+|.
T Consensus       110 --g~~----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 --GDI----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             --HHH----HHHHHTTEEEEEEEEEC--
T ss_pred             --chh----HHHHhhhccccccEEEecc
Confidence              221    2567888999999998864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.91  E-value=0.58  Score=38.12  Aligned_cols=62  Identities=13%  Similarity=0.139  Sum_probs=44.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHh--------------------CCC-CEEEecCCCCCccccccCCCHHHHhhcCCE
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEA--------------------FSC-PINYYSRTEKPNLKYKYYPSVVELASNCHI  198 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~--------------------~G~-~V~~~~~~~~~~~~~~~~~~l~e~~~~aDv  198 (313)
                      ..+.|+++.|||-|+.+..+|+.|..                    .|. +|..+.|+......+.. ..+.|+..-.++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~-~Elre~~~~~~~  113 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI-KELREMIQLPGT  113 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCH-HHHHHHHTCTTE
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCc-hhhhcccccCCC
Confidence            45789999999999999999999986                    476 48887776643332221 235667777776


Q ss_pred             EEEe
Q 021388          199 LVVA  202 (313)
Q Consensus       199 V~~~  202 (313)
                      -+..
T Consensus       114 ~~~~  117 (225)
T d1cjca1         114 RPML  117 (225)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            6544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.80  E-value=0.19  Score=42.49  Aligned_cols=38  Identities=29%  Similarity=0.369  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.||++-|-|.+ .||+++|+.|...|++|.+.+|+.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3789999888765 5999999999999999999998754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.24  Score=41.63  Aligned_cols=31  Identities=26%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |.|||.|..|-..|..|+..|++|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=87.63  E-value=0.24  Score=38.96  Aligned_cols=101  Identities=20%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc--ccCCC----HH-HHhhcCCEEEEecCCChhhhcccCH--
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY--KYYPS----VV-ELASNCHILVVACPLTEETRHIINR--  215 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~--~~~~~----l~-e~~~~aDvV~~~lp~~~~t~~li~~--  215 (313)
                      .+|||=|+|+||+.+.|.+..-+.+|.+.+.......-+  ..++|    ++ ++-...|.+++    ..+.-.+...  
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence            379999999999999999887789988776433211000  00111    11 11223344433    1111222222  


Q ss_pred             -HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388          216 -EVIDALGPKGVLINIGRGPHVDERELVSALVEGR  249 (313)
Q Consensus       216 -~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~  249 (313)
                       +.+..-+-|.-+|==++|.-.+.+.+...++.|-
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence             2233333455555556888888888888888663

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.45  E-value=0.33  Score=38.30  Aligned_cols=39  Identities=10%  Similarity=0.063  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      ...|.+|.|.| .|.+|....+.++..|++|++..+++++
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            34578899998 6999999999999999999998877654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=87.27  E-value=0.34  Score=40.15  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=29.1

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |.|||.|.+|.++|..|...|++|.++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999999754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.01  E-value=0.34  Score=39.30  Aligned_cols=32  Identities=25%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.|||.|..|...|..|+..|++|.++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999997654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.96  E-value=0.26  Score=42.45  Aligned_cols=62  Identities=11%  Similarity=0.017  Sum_probs=44.6

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------------ccccCCCHHHHhhcCCEEE
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------------KYKYYPSVVELASNCHILV  200 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~e~~~~aDvV~  200 (313)
                      -.||+|.|.| .|-||+.+++.|...|++|.+..|+..+..                    ......++++++..+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            4699999996 577999999999999999998766532110                    0111235667888999887


Q ss_pred             Eec
Q 021388          201 VAC  203 (313)
Q Consensus       201 ~~l  203 (313)
                      .+.
T Consensus        89 ~~a   91 (342)
T d1y1pa1          89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             hhc
Confidence            554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.85  E-value=0.13  Score=39.72  Aligned_cols=96  Identities=13%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCC----C-E--EEecCCCCC--cc---------------ccccCCCHHHHhhcCCEE
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSC----P-I--NYYSRTEKP--NL---------------KYKYYPSVVELASNCHIL  199 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~----~-V--~~~~~~~~~--~~---------------~~~~~~~l~e~~~~aDvV  199 (313)
                      .+|.|+|. |.+|+.+|-.|...++    . +  ..++.....  ..               ......+..+.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            48999996 9999999999986443    1 2  223322211  00               011235678899999999


Q ss_pred             EEecCC--Chh-hhc-cc--C--------HHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388          200 VVACPL--TEE-TRH-II--N--------REVIDALGPKGVLINIGRGPHVDERELV  242 (313)
Q Consensus       200 ~~~lp~--~~~-t~~-li--~--------~~~l~~mk~ga~lIn~~rg~~vd~~al~  242 (313)
                      +++.-.  .|. ++. ++  |        ....+..+++++++.++.  .+|.-..+
T Consensus        85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~~  139 (154)
T d1y7ta1          85 LLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNALI  139 (154)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             EeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHHH
Confidence            998632  221 211 11  1        122233466888888764  56665543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.79  E-value=0.4  Score=34.85  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHhCCC---CEEEecCCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRAEAFSC---PINYYSRTEKP  179 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l~~~G~---~V~~~~~~~~~  179 (313)
                      .+++.|||.|.+|-.+|..+..+|.   +|..+.+....
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            4789999999999999988877765   59888876543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.61  E-value=0.29  Score=38.98  Aligned_cols=31  Identities=26%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +.|||.|..|...|..+..+|.+|.++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.47  E-value=0.87  Score=36.71  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHH--------------------hCCCC-EEEecCCCCCccccccCCCHHHHhhcCCE
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAE--------------------AFSCP-INYYSRTEKPNLKYKYYPSVVELASNCHI  198 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~--------------------~~G~~-V~~~~~~~~~~~~~~~~~~l~e~~~~aDv  198 (313)
                      ..+.|+++.|||-|+.+..+|+.|.                    ..|.+ |..+-|+......+. ...+.|+.+-.+.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCCC
Confidence            4578999999999999999999886                    57775 777766554332221 1135566666666


Q ss_pred             EEEecC
Q 021388          199 LVVACP  204 (313)
Q Consensus       199 V~~~lp  204 (313)
                      -+..-|
T Consensus       114 ~~~~~~  119 (216)
T d1lqta1         114 DVVIDP  119 (216)
T ss_dssp             EEECCG
T ss_pred             CccCCH
Confidence            555433

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=86.37  E-value=0.4  Score=37.44  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=32.5

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      ..|.+|.|-| .|.+|....+.++.+|++|++..++.++
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            3466788888 6999999999999999999998887654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.20  E-value=0.38  Score=38.47  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.|||.|..|...|..+...|++|.+++....
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999986543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.13  E-value=0.38  Score=40.36  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=28.8

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE  177 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~  177 (313)
                      .|.|||.|.+|.++|..|...|. +|.++|+..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            48999999999999999999997 699999764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=86.09  E-value=0.27  Score=38.77  Aligned_cols=30  Identities=30%  Similarity=0.479  Sum_probs=26.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSR  175 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~  175 (313)
                      +|||=|+|+||+.+.+.+...+.+|.+.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            689999999999999999888888877753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.83  E-value=0.34  Score=38.13  Aligned_cols=35  Identities=14%  Similarity=0.055  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ..++|.|||-|..|...|..+..+|++|.++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            34689999999999999999999999999998544

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.64  E-value=0.67  Score=35.48  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~  178 (313)
                      .+++|.|||-|..|..+|..+..+|++ |..+-|+..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            467899999999999999999999987 666665543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.53  E-value=0.36  Score=39.65  Aligned_cols=34  Identities=26%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |.|-|-| .+.||+++|+.|...|++|++.|++..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            3445556 467999999999999999999988654

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=7.1  Score=30.89  Aligned_cols=154  Identities=17%  Similarity=0.190  Sum_probs=83.8

Q ss_pred             CCCEEEEE-cC-------ChHHHHHHHHHHhCCCCEEEecCCCCCcc---c---cc-----------------------c
Q 021388          143 TGKTVGII-GL-------GRIGMAVAKRAEAFSCPINYYSRTEKPNL---K---YK-----------------------Y  185 (313)
Q Consensus       143 ~g~~igii-G~-------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---~---~~-----------------------~  185 (313)
                      .||+|.|| |-       ..+...+.+.++..|++|...|.....-.   .   ..                       .
T Consensus         1 ~~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (230)
T d2qwxa1           1 AGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL   80 (230)
T ss_dssp             CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred             CCCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhcccc
Confidence            36777655 32       23556677778888999988876443210   0   00                       0


Q ss_pred             CC---CHHHHhhcCCEEEEecCC-----ChhhhcccCHH-------------HHhccCCCcEEEEcCCCccc--------
Q 021388          186 YP---SVVELASNCHILVVACPL-----TEETRHIINRE-------------VIDALGPKGVLINIGRGPHV--------  236 (313)
Q Consensus       186 ~~---~l~e~~~~aDvV~~~lp~-----~~~t~~li~~~-------------~l~~mk~ga~lIn~~rg~~v--------  236 (313)
                      ..   ...+.+..||.|++..|.     +...++.|++=             .-..++....++-+++|+..        
T Consensus        81 ~~di~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g~  160 (230)
T d2qwxa1          81 ASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGV  160 (230)
T ss_dssp             CHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTST
T ss_pred             cHHHHHHHHHHHhCCEEEEEeCcccccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhcccccc
Confidence            01   223467889999999984     33455555431             11234444444444444421        


Q ss_pred             --cHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021388          237 --DERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLT  310 (313)
Q Consensus       237 --d~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  310 (313)
                        ...++...+...-....++++.             +.+.+ -.+...+.+..+.+.+...+.+.+..+.++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~G~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~  222 (230)
T d2qwxa1         161 NGDSRYFLWPLQHGTLHFCGFKVL-------------APQIS-FAPEIASEEERKGMVAAWSQRLQTIWKEEPIPC  222 (230)
T ss_dssp             TCCHHHHHHHHHCCCCCTTTCEEC-------------CCEEE-CCTTTSCHHHHHHHHHHHHHHHHTGGGCCCCCC
T ss_pred             cccHHHHHHHHHHHHHHhCCCeEc-------------ceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence              2334444444443331112111             11111 122345677788888888999999988888764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.07  E-value=0.4  Score=32.58  Aligned_cols=37  Identities=14%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      .|.++.|.|- |.+|....+.++.+|++|++..+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            5667888765 999999999999999999998877653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.5  Score=36.34  Aligned_cols=30  Identities=23%  Similarity=0.204  Sum_probs=28.0

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      |.|||-|..|-..|..+..+|++|.++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.97  E-value=0.46  Score=38.46  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=29.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388          145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKP  179 (313)
Q Consensus       145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~  179 (313)
                      |++.|-|. +.||+++|+.|...|++|++.+++.+.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            56666665 789999999999999999999987654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.95  E-value=0.094  Score=42.38  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCE
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPI  170 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V  170 (313)
                      ++|.|||.|.+|...|..|+..|.+|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            47999999999999999999888754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.68  E-value=0.41  Score=37.70  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=28.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTE  177 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~  177 (313)
                      ++|.|||.|.+|-.+|..|+.++  .+|.++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999999999999998875  4688887654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.64  E-value=0.25  Score=39.76  Aligned_cols=34  Identities=12%  Similarity=0.125  Sum_probs=29.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCC-------CCEEEecCCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFS-------CPINYYSRTEK  178 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G-------~~V~~~~~~~~  178 (313)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999998776       57999987653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.52  E-value=0.52  Score=35.18  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=29.6

Q ss_pred             CCEEEEEcCChHHHHHHHHH----HhCCCCEEEecCCCC
Q 021388          144 GKTVGIIGLGRIGMAVAKRA----EAFSCPINYYSRTEK  178 (313)
Q Consensus       144 g~~igiiG~G~iG~~iA~~l----~~~G~~V~~~~~~~~  178 (313)
                      ++++.|||-|.+|-.+|..|    +..|.+|...++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            57999999999999988777    467999999887654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=84.49  E-value=1.4  Score=37.74  Aligned_cols=109  Identities=16%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY  172 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~  172 (313)
                      +|=-+++-+++.+|-.                   +..|...+|.|.|.|.-|-.+|+.+...    |.       +++.
T Consensus         4 Ta~V~lAglinAlki~-------------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~   64 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT-------------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYL   64 (308)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEE
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEE
Confidence            4556777777777633                   3458888999999999999999988654    32       4888


Q ss_pred             ecCCCC----C-c-cc----c----ccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHHHhcc---CCCcEEEEcCCC
Q 021388          173 YSRTEK----P-N-LK----Y----KYYPSVVELASN--CHILVVACPLTEETRHIINREVIDAL---GPKGVLINIGRG  233 (313)
Q Consensus       173 ~~~~~~----~-~-~~----~----~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~l~~m---k~ga~lIn~~rg  233 (313)
                      +|+..-    . . ..    +    ....++.++++.  .++++-+-.    ..++++++.++.|   .+.+++.=.|.-
T Consensus        65 vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~PIIFaLSNP  140 (308)
T d1o0sa1          65 MDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAST----VRGAFNEEVIRAMAEINERPIIFALSNP  140 (308)
T ss_dssp             EETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEeccc----ccCCCCHHHHHHHHhhCCCcEEEEccCC
Confidence            886421    0 0 00    0    112356676653  355554432    2456777777655   488888888876


Q ss_pred             cc
Q 021388          234 PH  235 (313)
Q Consensus       234 ~~  235 (313)
                      ..
T Consensus       141 tp  142 (308)
T d1o0sa1         141 TS  142 (308)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.34  E-value=0.45  Score=38.03  Aligned_cols=31  Identities=32%  Similarity=0.308  Sum_probs=28.7

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      .+.|||.|..|...|..++.+|.+|.+.+..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4789999999999999999999999999864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=83.89  E-value=0.26  Score=40.80  Aligned_cols=34  Identities=29%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             CEEEEE-cC-ChHHHHHHHHHHhCCCC-------EEEecCCCC
Q 021388          145 KTVGII-GL-GRIGMAVAKRAEAFSCP-------INYYSRTEK  178 (313)
Q Consensus       145 ~~igii-G~-G~iG~~iA~~l~~~G~~-------V~~~~~~~~  178 (313)
                      |+|.+| |. +.||+++|+.|...|++       |..++|+.+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~   43 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA   43 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHH
Confidence            465544 55 56999999999999998       888888754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.87  E-value=0.52  Score=35.74  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=27.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      .+|.|||-|.+|-.+|..|+. +.+|.++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999976 67999888654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.71  E-value=0.59  Score=37.51  Aligned_cols=32  Identities=31%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      -+.|||.|..|...|..++.+|++|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.29  E-value=0.6  Score=37.51  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=28.9

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      |.|||.|..|...|..++.+|.+|.++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999998654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.28  E-value=0.5  Score=37.71  Aligned_cols=38  Identities=29%  Similarity=0.580  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      ..++||+|.|||.|..|..+|..+...+.++...-++.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999998888776655443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.7  Score=39.11  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=27.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCC
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      |+|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            6788885 6889999999999999999999863

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=83.10  E-value=0.41  Score=39.50  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=36.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-ccccCCCHHHHhhc--CCEEEEec
Q 021388          145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASN--CHILVVAC  203 (313)
Q Consensus       145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~e~~~~--aDvV~~~l  203 (313)
                      ++|.|.| .|-+|+.+++.|...|. +.+.+++..... .......+++++++  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            4788888 49999999999998886 445554443221 11112234555653  59876544

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=83.08  E-value=0.61  Score=39.42  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=29.6

Q ss_pred             EEEEEcCChHHHHHHHHHH-----hCCCCEEEecCCCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAE-----AFSCPINYYSRTEKP  179 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~-----~~G~~V~~~~~~~~~  179 (313)
                      -|.|||.|..|..+|..|.     ..|++|.++++.+..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4899999999999999995     579999999987653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.04  E-value=0.62  Score=36.92  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=27.9

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      +.|||.|..|...|..++.+|.+|.+.+..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            689999999999999999999999999764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=82.90  E-value=0.68  Score=37.85  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      .|.|||.|..|...|..|+..|.+|+++++.+.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            488999999999999999999999999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.86  E-value=0.88  Score=38.79  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=27.5

Q ss_pred             CEEEEE-cCChHHHHHHHHHHhCCCCEEEecCC
Q 021388          145 KTVGII-GLGRIGMAVAKRAEAFSCPINYYSRT  176 (313)
Q Consensus       145 ~~igii-G~G~iG~~iA~~l~~~G~~V~~~~~~  176 (313)
                      ++|.|+ |.|-||+.+++.|...|++|.++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            467777 56899999999999999999999863

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=82.56  E-value=2.8  Score=32.65  Aligned_cols=91  Identities=13%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             CCEEEEEc-CChHHHHHHHHHHhCC-CCEEEe-cCCCC-Cccc----------c-ccCCCHHHHhhcCCEEEEecCCChh
Q 021388          144 GKTVGIIG-LGRIGMAVAKRAEAFS-CPINYY-SRTEK-PNLK----------Y-KYYPSVVELASNCHILVVACPLTEE  208 (313)
Q Consensus       144 g~~igiiG-~G~iG~~iA~~l~~~G-~~V~~~-~~~~~-~~~~----------~-~~~~~l~e~~~~aDvV~~~lp~~~~  208 (313)
                      ..+|||+| .|-.|+.+.+.|...- +++... +++.. +...          . ......++...++|++++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            34799997 5899999999998753 355433 33222 1110          0 0111234457899999999996543


Q ss_pred             hhcccCHHHHhccCCCcEEEEcCCCc-cccHHH
Q 021388          209 TRHIINREVIDALGPKGVLINIGRGP-HVDERE  240 (313)
Q Consensus       209 t~~li~~~~l~~mk~ga~lIn~~rg~-~vd~~a  240 (313)
                            .+....+.+...+|+.+.+. ..+.+.
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~~~~~~  111 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRLRDINE  111 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTCSCHHH
T ss_pred             ------HHHHHHHHhcCcccccchhhhccccch
Confidence                  33444455555555555443 344443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.64  E-value=0.61  Score=39.70  Aligned_cols=34  Identities=18%  Similarity=0.097  Sum_probs=28.1

Q ss_pred             CEEE-EE-cCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388          145 KTVG-II-GLGRIGMAVAKRAEAFSCPINYYSRTEK  178 (313)
Q Consensus       145 ~~ig-ii-G~G~iG~~iA~~l~~~G~~V~~~~~~~~  178 (313)
                      |+|+ |. |.|-||+.+++.|...|++|.+.||...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            5674 44 5788999999999999999999998643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.49  E-value=0.27  Score=36.61  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=37.1

Q ss_pred             EEEEEcCChHHHHHHHHHH-hCCCCEEEe-cCCCCCc----cccc--cCCCHHHHh-hcCCEEEEecC
Q 021388          146 TVGIIGLGRIGMAVAKRAE-AFSCPINYY-SRTEKPN----LKYK--YYPSVVELA-SNCHILVVACP  204 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~-~~G~~V~~~-~~~~~~~----~~~~--~~~~l~e~~-~~aDvV~~~lp  204 (313)
                      ++.|+|.|++|+.+++.+. .-|+++.++ |..+...    .|..  ....++++. +..++.++++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7899999999999998764 457787654 6554421    1222  123455544 34566666666

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=81.11  E-value=0.59  Score=36.76  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             EEEEEcCChHHHHHHHHHHhCC---CCEEEecC
Q 021388          146 TVGIIGLGRIGMAVAKRAEAFS---CPINYYSR  175 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~~G---~~V~~~~~  175 (313)
                      +|||=|+|+||+.+.|.+....   .+|.+.+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            7999999999999999876533   45665543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.01  E-value=0.82  Score=36.03  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             EEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388          147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTE  177 (313)
Q Consensus       147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~  177 (313)
                      +.|||.|..|...|..++..|.+|.++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            7899999999999999999999999997643

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.56  E-value=0.72  Score=36.14  Aligned_cols=30  Identities=27%  Similarity=0.270  Sum_probs=24.3

Q ss_pred             EEEEEcCChHHHHHHHHHHh---CCCCEEEecC
Q 021388          146 TVGIIGLGRIGMAVAKRAEA---FSCPINYYSR  175 (313)
Q Consensus       146 ~igiiG~G~iG~~iA~~l~~---~G~~V~~~~~  175 (313)
                      +|||=|+|+||+.+.+.+..   .+.+|.+.+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999998864   3467776654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=80.46  E-value=0.81  Score=37.97  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHh-CCCCEEEecCCCC
Q 021388          143 TGKTVGIIGLGRIGMAVAKRAEA-FSCPINYYSRTEK  178 (313)
Q Consensus       143 ~g~~igiiG~G~iG~~iA~~l~~-~G~~V~~~~~~~~  178 (313)
                      ...-|.|||.|.-|...|..|.. .|++|.++++.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            34569999999999999999865 6999999997654

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=80.27  E-value=4  Score=34.59  Aligned_cols=125  Identities=12%  Similarity=0.144  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388          104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY  172 (313)
Q Consensus       104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~  172 (313)
                      +|=-+++-+|+.+|-.                   +.+|...+|.|.|.|.-|-.+|+.+...    |+       +++.
T Consensus         4 TaaV~lAglinAlki~-------------------gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l   64 (298)
T d1gq2a1           4 TASVAVAGLLAALRIT-------------------KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWM   64 (298)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEE
T ss_pred             HHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEE
Confidence            4556777778877633                   3468889999999999999999988743    32       6888


Q ss_pred             ecCCCC----C--ccc-----c---ccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHHHh---ccCCCcEEEEcCCC
Q 021388          173 YSRTEK----P--NLK-----Y---KYYPSVVELASN--CHILVVACPLTEETRHIINREVID---ALGPKGVLINIGRG  233 (313)
Q Consensus       173 ~~~~~~----~--~~~-----~---~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~l~---~mk~ga~lIn~~rg  233 (313)
                      +|+..-    .  ...     .   ....++.++.+.  .++++-...    .-++++++.+.   .|.+.+++.=.|.-
T Consensus        65 ~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSNP  140 (298)
T d1gq2a1          65 VDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSNP  140 (298)
T ss_dssp             EETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccCC
Confidence            886321    1  000     1   113467776654  566655432    23567777665   56789999988876


Q ss_pred             cc---ccHHHHHHHHHhCCee
Q 021388          234 PH---VDERELVSALVEGRLG  251 (313)
Q Consensus       234 ~~---vd~~al~~al~~~~l~  251 (313)
                      ..   -+.++.+++-+.+-|.
T Consensus       141 t~~~E~~~~~a~~wt~G~ai~  161 (298)
T d1gq2a1         141 TSKAECTAEQLYKYTEGRGIF  161 (298)
T ss_dssp             GGGCSSCHHHHHHHTTTCCEE
T ss_pred             CCcCCCCHHHHhhhcccceEE
Confidence            44   2334444443333343

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.24  E-value=0.47  Score=36.13  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHHhCCCCE
Q 021388          142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPI  170 (313)
Q Consensus       142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V  170 (313)
                      ..|+++.|||.|.+|..+|..+..+|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            46899999999999999999999999864