Citrus Sinensis ID: 021514

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHcccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccEEEEccccccccccccccccccEEEEEcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccHHHHHHHccccHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccEEcccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
matfsfcsnfpsptsslskfgsskpliifpsngthnrlsssihspptsifcsatkgpssdnipnnfsiiegpeTLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKvidesgeeeasempeipssipflpyvtpktLKQLYLTSLSFISGIILfggliaptlelklglggtsyEDFIRNmhlpmqlsqvdpivasfsGGAVGVISALMLIEANNVEQQEKKrckychgsgylacarcsssgvclsvdpistsnasngplrvpttqrcpncsgagkvmcpsclctgmmmasehdpridpfd
Flexible Loop (DISEMBL)
matfsfcsnfpsptsslskfgsSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGlkvidesgeeeasempeipssipFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPIStsnasngplrvpTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD
Low Complexity Region (SEG)
MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVidesgeeeasempeipssipFLPYVTPKTLKQLYLTslsfisgiilfggliAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD
Disordered region (IsUnstruct)
*****************************************************************FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVI*****************IPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPI****************RCPNCSGAGKVMCPSCLCTGMM*************
Disordered Region (DISOPRED)
*********FP******************************************************FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQ**************************IPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLI***********RCKYCHGSGYLACARCSSSGVCLS*******************QRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDP**
Disordered Region (DISEMBL)
*******************FGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDE**********EIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD
Disordered Region (DISPRO)
*ATFSFCSNFPSPTSSLSKFGSSKPLIIFPSN*************P*SIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK**************EIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTS*****PLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRI****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
225440823	315	PREDICTED: uncharacterized protein LOC10	0.996	0.984	0.702	1e-124
224088517	248	predicted protein [Populus trichocarpa]	0.797	1.0	0.846	1e-124
356498741	319	PREDICTED: uncharacterized protein LOC10	0.858	0.836	0.798	1e-124
255578979	307	conserved hypothetical protein [Ricinus	0.958	0.970	0.712	1e-123
449451152	324	PREDICTED: uncharacterized protein LOC10	0.813	0.780	0.841	1e-123
363807886	312	uncharacterized protein LOC100794571 [Gl	0.842	0.839	0.806	1e-118
22326624	315	chaperone protein dnaJ-like protein [Ara	0.926	0.914	0.696	1e-117
297810711	314	hypothetical protein ARALYDRAFT_487416 [	0.926	0.917	0.692	1e-115
8978349	319	unnamed protein product [Arabidopsis tha	0.938	0.915	0.686	1e-112
388515629	320	unknown [Lotus japonicus]	0.832	0.809	0.796	1e-107

>gi|225440823|ref|XP_002282029.1| PREDICTED: uncharacterized protein LOC100261394 [Vitis vinifera] gi|147792025|emb|CAN62037.1| hypothetical protein VITISV_021370 [Vitis vinifera] gi|297740143|emb|CBI30325.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/316 (70%), Positives = 258/316 (81%), Gaps = 6/316 (1%)

Query: 1   MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKG---- 56
           MA+  F S   +P S+ +   S   + I   +G   RLS       + I C++ K     
Sbjct: 1   MASLLFFSQ-SAPISAWNSTSSKALICITALHGNPKRLSLHRRISRSQIICASGKDFSDP 59

Query: 57  -PSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKG 115
            P  D  P+NF IIEGPET+QDFVQMQ++EI+DNI  RRN+IF LMEE+RRLRVQQRIK 
Sbjct: 60  LPDGDTNPSNFCIIEGPETVQDFVQMQVQEIQDNISSRRNKIFLLMEEVRRLRVQQRIKS 119

Query: 116 LKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLEL 175
           +KV DE+GEEEA+EMP++PSSIPFLP+VT +TLKQLYLTS SFIS II+FGGL+APTLEL
Sbjct: 120 VKVFDENGEEEANEMPDMPSSIPFLPHVTKRTLKQLYLTSFSFISAIIIFGGLLAPTLEL 179

Query: 176 KLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCK 235
           KLGLGGTSYEDFIR+MHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ EKKRCK
Sbjct: 180 KLGLGGTSYEDFIRSMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQHEKKRCK 239

Query: 236 YCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCT 295
           YC+G GYL CARCS+SGVCLS++PIS S+AS+ PL+ P T+RCPNCSG GKVMCP+CLCT
Sbjct: 240 YCNGKGYLPCARCSASGVCLSIEPISVSSASDRPLKAPATRRCPNCSGVGKVMCPTCLCT 299

Query: 296 GMMMASEHDPRIDPFD 311
           GM+MASEHDPRIDPFD
Sbjct: 300 GMVMASEHDPRIDPFD 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088517|ref|XP_002308463.1| predicted protein [Populus trichocarpa] gi|222854439|gb|EEE91986.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/248 (84%), Positives = 235/248 (94%)

Query: 64  NNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESG 123
           +NF IIEGPET+QDFVQMQ++EI+DNI+ RRN+IF LMEE+RRLRVQQRIK LKV+DESG
Sbjct: 1   SNFCIIEGPETVQDFVQMQMQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKNLKVVDESG 60

Query: 124 EEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTS 183
           EE+A EMP++PSSIPFLP+VTPKTL+QLYLTS SFISGIILFGGLIAPTLELKLGLGGTS
Sbjct: 61  EEDADEMPDMPSSIPFLPHVTPKTLRQLYLTSFSFISGIILFGGLIAPTLELKLGLGGTS 120

Query: 184 YEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYL 243
           YEDFIR+MHLP+QLS VDPIVASF GGAVGVIS+LMLIE NNVEQQEKKRCKYCHG+GYL
Sbjct: 121 YEDFIRSMHLPLQLSMVDPIVASFVGGAVGVISSLMLIEVNNVEQQEKKRCKYCHGTGYL 180

Query: 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEH 303
           ACARCS+SGVCLS+DPIS S+AS+ PL+VP TQRCPNCSGAGKVMCP+CLCTGM+MASEH
Sbjct: 181 ACARCSASGVCLSIDPISLSSASDRPLQVPATQRCPNCSGAGKVMCPTCLCTGMVMASEH 240

Query: 304 DPRIDPFD 311
           DPR DPFD
Sbjct: 241 DPRFDPFD 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498741|ref|XP_003518208.1| PREDICTED: uncharacterized protein LOC100778068 [Glycine max]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/268 (79%), Positives = 240/268 (89%), Gaps = 1/268 (0%)

Query: 45  PPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEEL 104
           P  ++F S     SSDN P+NF IIEGPET++DFVQMQL+EI+DNIK RRN+IF LMEE+
Sbjct: 52  PRITVFSSLKDAGSSDNTPSNFCIIEGPETIEDFVQMQLQEIQDNIKSRRNKIFLLMEEV 111

Query: 105 RRLRVQQRIK-GLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGII 163
           RRLRVQQR + G KV++E GEE+  EMP+IPSSIPFL +VTPKTLK+LYLTS+SFIS II
Sbjct: 112 RRLRVQQRTRRGQKVVNEEGEEKPDEMPDIPSSIPFLSHVTPKTLKKLYLTSMSFISAII 171

Query: 164 LFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEA 223
           +FGGLIAPTLELKLGLGGTSYEDFIR+MHLP+QLSQVDPIVASFSGGAVGVIS LMLIEA
Sbjct: 172 VFGGLIAPTLELKLGLGGTSYEDFIRSMHLPLQLSQVDPIVASFSGGAVGVISVLMLIEA 231

Query: 224 NNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSG 283
           NNVEQQEKKRCKYCHG+GYLACARCS+SGVCL++DPIS  +AS  PL  PTT+RCPNCSG
Sbjct: 232 NNVEQQEKKRCKYCHGTGYLACARCSASGVCLNIDPISVCSASARPLHAPTTRRCPNCSG 291

Query: 284 AGKVMCPSCLCTGMMMASEHDPRIDPFD 311
           AGKVMCPSCLCTGMMMASEHD RIDPFD
Sbjct: 292 AGKVMCPSCLCTGMMMASEHDLRIDPFD 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578979|ref|XP_002530342.1| conserved hypothetical protein [Ricinus communis] gi|223530146|gb|EEF32058.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/320 (71%), Positives = 264/320 (82%), Gaps = 22/320 (6%)

Query: 1   MATFSFCS-NFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSS 59
           M+TFS CS +   PT +     ++K       +    R+S         + CS+    SS
Sbjct: 1   MSTFSLCSPHLLHPTQNFISINNNK-------SKPKQRISK------FRLLCSSPPINSS 47

Query: 60  DNIPN----NFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIK- 114
           D++P+    NF IIEGPET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK 
Sbjct: 48  DSVPSADSSNFCIIEGPETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKR 107

Query: 115 -GLKVIDESG--EEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAP 171
             +K+IDE+G  EE+  EMP+IPSSIPFLP VTPKTLKQLYLTSLSFISGII+FGGLIAP
Sbjct: 108 KTVKIIDETGQKEEDTDEMPDIPSSIPFLPRVTPKTLKQLYLTSLSFISGIIVFGGLIAP 167

Query: 172 TLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEK 231
           TLELKLG+GGTSYEDFI ++HLP+QLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEK
Sbjct: 168 TLELKLGIGGTSYEDFICSLHLPLQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEK 227

Query: 232 KRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPS 291
           KRCKYCHG+GYLACARCS+SGVCLS+DPIS S+ S+ PLRVPTTQRC NCSGAGKVMCP+
Sbjct: 228 KRCKYCHGTGYLACARCSASGVCLSIDPISLSSISDQPLRVPTTQRCINCSGAGKVMCPT 287

Query: 292 CLCTGMMMASEHDPRIDPFD 311
           CLCTGM+MASEHDPRI+PFD
Sbjct: 288 CLCTGMLMASEHDPRIEPFD 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451152|ref|XP_004143326.1| PREDICTED: uncharacterized protein LOC101214251 [Cucumis sativus] gi|449508430|ref|XP_004163310.1| PREDICTED: uncharacterized LOC101214251 [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/253 (84%), Positives = 233/253 (92%)

Query: 59  SDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKV 118
           SDN  +NF IIEGPET+QDFVQMQ +EI+DNI+ RRN+IF LMEE+RRLR+QQR+K LK 
Sbjct: 72  SDNTSSNFCIIEGPETVQDFVQMQFQEIQDNIRSRRNKIFLLMEEVRRLRIQQRLKNLKP 131

Query: 119 IDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLG 178
           IDE+  EEA+EMP+IPSSIPFLP+VTPKTLKQ YLTSLS I GII+FGGLIAPTLELKLG
Sbjct: 132 IDENDIEEANEMPDIPSSIPFLPHVTPKTLKQQYLTSLSVIWGIIVFGGLIAPTLELKLG 191

Query: 179 LGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCH 238
           LGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCH
Sbjct: 192 LGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCH 251

Query: 239 GSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMM 298
           G+GYLACARCSSSGVCLS DPIS S +S+ PLR+P TQRC NCSGAGKVMCP+CLCTGM+
Sbjct: 252 GTGYLACARCSSSGVCLSADPISLSASSSRPLRMPKTQRCLNCSGAGKVMCPTCLCTGML 311

Query: 299 MASEHDPRIDPFD 311
           MASEHDPR DPFD
Sbjct: 312 MASEHDPRFDPFD 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807886|ref|NP_001242702.1| uncharacterized protein LOC100794571 [Glycine max] gi|255640133|gb|ACU20357.1| unknown [Glycine max]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/263 (80%), Positives = 238/263 (90%), Gaps = 1/263 (0%)

Query: 50  FCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRV 109
           F S+    SSDN P+NF IIEGPET++DF+QMQL+EI+DNIK RRN+IF LMEE+RRLRV
Sbjct: 50  FSSSKDAGSSDNTPSNFCIIEGPETVEDFMQMQLQEIQDNIKSRRNKIFLLMEEVRRLRV 109

Query: 110 QQRIK-GLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGL 168
           QQR + G KV++E GEEE +EMP+IPSSIPF P+VTPKTLK+LYLTS+SFIS II+FGGL
Sbjct: 110 QQRTRRGKKVVNEEGEEEPNEMPDIPSSIPFHPHVTPKTLKKLYLTSISFISAIIVFGGL 169

Query: 169 IAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ 228
           IAPTLELKLGLGGTSYEDFIR++HLP+QLSQVDPIVASFSGGAVGVIS LMLIEANNVEQ
Sbjct: 170 IAPTLELKLGLGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQ 229

Query: 229 QEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM 288
           QEKKRCKYCHG+GYLACARCS+SGVCL++DPIS S AS  PL  PTT RCPNCSGAGKVM
Sbjct: 230 QEKKRCKYCHGTGYLACARCSASGVCLNIDPISVSTASARPLHAPTTTRCPNCSGAGKVM 289

Query: 289 CPSCLCTGMMMASEHDPRIDPFD 311
           CP+CLCTGMMMASEHD RIDPFD
Sbjct: 290 CPTCLCTGMMMASEHDLRIDPFD 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326624|ref|NP_196231.2| chaperone protein dnaJ-like protein [Arabidopsis thaliana] gi|18176020|gb|AAL59969.1| unknown protein [Arabidopsis thaliana] gi|22136730|gb|AAM91684.1| unknown protein [Arabidopsis thaliana] gi|332003591|gb|AED90974.1| chaperone protein dnaJ-like protein [Arabidopsis thaliana]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/306 (69%), Positives = 248/306 (81%), Gaps = 18/306 (5%)

Query: 6   FCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNN 65
           F S++  P+ SL   GSS+ L+   S+G++NR       PP          PS D +PNN
Sbjct: 28  FPSSYLKPSPSLLFHGSSRSLLSC-SDGSNNR-------PP----------PSGDTVPNN 69

Query: 66  FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEE 125
           F IIEG ET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK +K I+E  E 
Sbjct: 70  FCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSEL 129

Query: 126 EASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYE 185
           EA+EMPEI SSIPFLP VTPKTLKQLY TS++ ISGII FGGLIAP LELK+GLGGTSYE
Sbjct: 130 EATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYE 189

Query: 186 DFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLAC 245
           DFIR++HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL C
Sbjct: 190 DFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPC 249

Query: 246 ARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDP 305
           ARCS+SGVCLS+DPI+   A+N  ++V TT+RC NCSGAGKVMCP+CLCTGM+ ASEHDP
Sbjct: 250 ARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHDP 309

Query: 306 RIDPFD 311
           R DPFD
Sbjct: 310 RFDPFD 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810711|ref|XP_002873239.1| hypothetical protein ARALYDRAFT_487416 [Arabidopsis lyrata subsp. lyrata] gi|297319076|gb|EFH49498.1| hypothetical protein ARALYDRAFT_487416 [Arabidopsis lyrata subsp. lyrata]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/306 (69%), Positives = 247/306 (80%), Gaps = 18/306 (5%)

Query: 6   FCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNN 65
           F S++  P+ SL   GSS+ L+   S+G++N        PP          PS D +PNN
Sbjct: 27  FPSSYLKPSPSLLFHGSSRSLLSC-SDGSNN-------GPP----------PSGDTVPNN 68

Query: 66  FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEE 125
           F IIEG ET+QDFVQMQL+EI+D+I+ RRN+IF LMEE+RRLRVQQRIK +K I+E  E 
Sbjct: 69  FCIIEGSETVQDFVQMQLQEIQDSIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSEL 128

Query: 126 EASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYE 185
           EA+EMPEI SSIPFLP VTPKTLKQLY TS++ ISGII FGGLIAP LELK+GLGGTSYE
Sbjct: 129 EATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYE 188

Query: 186 DFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLAC 245
           DFIR++HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL C
Sbjct: 189 DFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPC 248

Query: 246 ARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDP 305
           ARCS+SGVCLS+DPI+   ASN  ++V TT+RC NCSGAGKVMCP+CLCTGM+ ASEHDP
Sbjct: 249 ARCSASGVCLSIDPITKPRASNRLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHDP 308

Query: 306 RIDPFD 311
           R DPFD
Sbjct: 309 RFDPFD 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8978349|dbj|BAA98202.1| unnamed protein product [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/306 (68%), Positives = 245/306 (80%), Gaps = 14/306 (4%)

Query: 6   FCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNN 65
           F S++  P+ SL   GSS+ L+   S+G++NR       PP S +       S      N
Sbjct: 28  FPSSYLKPSPSLLFHGSSRSLLSC-SDGSNNR-------PPPSDYLFGGYCFS------N 73

Query: 66  FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEE 125
           F IIEG ET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK +K I+E  E 
Sbjct: 74  FCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSEL 133

Query: 126 EASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYE 185
           EA+EMPEI SSIPFLP VTPKTLKQLY TS++ ISGII FGGLIAP LELK+GLGGTSYE
Sbjct: 134 EATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYE 193

Query: 186 DFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLAC 245
           DFIR++HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL C
Sbjct: 194 DFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPC 253

Query: 246 ARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDP 305
           ARCS+SGVCLS+DPI+   A+N  ++V TT+RC NCSGAGKVMCP+CLCTGM+ ASEHDP
Sbjct: 254 ARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHDP 313

Query: 306 RIDPFD 311
           R DPFD
Sbjct: 314 RFDPFD 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515629|gb|AFK45876.1| unknown [Lotus japonicus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 238/261 (91%), Gaps = 2/261 (0%)

Query: 52  SATKGP-SSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQ 110
           S++K P SSDN+P+NF IIEGPET+QDFVQMQL+EI+ NIK RRN+IF LMEE+RRLRVQ
Sbjct: 59  SSSKDPASSDNLPSNFCIIEGPETVQDFVQMQLQEIQGNIKSRRNKIFLLMEEVRRLRVQ 118

Query: 111 QRIKG-LKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLI 169
           QR++G  +VI E GEEEA+EMPEIPSSIPFLP VTPKTLK+LYLTS+SFIS +I+FGGLI
Sbjct: 119 QRLRGERRVISEEGEEEANEMPEIPSSIPFLPSVTPKTLKKLYLTSISFISAVIVFGGLI 178

Query: 170 APTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQ 229
           APTLELKLG+GGTSYEDFIR++HLP+QLSQVDPIVASFSGGAVGVIS LMLIEANNV++Q
Sbjct: 179 APTLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVKKQ 238

Query: 230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMC 289
           EK  CKYC G+GYLACARCS+SGVCL +DPIS S+AS  PL+VP T+RCPNCSGAGKVMC
Sbjct: 239 EKTMCKYCLGTGYLACARCSTSGVCLDIDPISVSSASVRPLQVPKTRRCPNCSGAGKVMC 298

Query: 290 PSCLCTGMMMASEHDPRIDPF 310
           P+CLCTGM MASEHD RIDPF
Sbjct: 299 PTCLCTGMKMASEHDLRIDPF 319

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2152845	315	AT5G06130 [Arabidopsis thalian	0.948	0.936	0.62	1.1e-92
TAIR|locus:2151556	307	AT5G61670 "AT5G61670" [Arabido	0.813	0.824	0.606	4.8e-78
TAIR|locus:2044812	186	EDA3 "embryo sac development a	0.282	0.473	0.275	0.00022

TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 186/300 (62%), Positives = 213/300 (71%)

Query:    17 LSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIF-CSATKG----PSSDNIPNNFSIIEG 71
             LS   +SK L+ FPS+      S   H    S+  CS        PS D +PNNF IIEG
Sbjct:    16 LSSPSTSKSLLRFPSSYLKPSPSLLFHGSSRSLLSCSDGSNNRPPPSGDTVPNNFCIIEG 75

Query:    72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXX 131
              ET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK +K              
Sbjct:    76 SETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSELEATEMP 135

Query:   132 XXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNM 191
                    FLP VTPKTLKQLY T               AP LELK+GLGGTSYEDFIR++
Sbjct:   136 EITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYEDFIRSL 195

Query:   192 HLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSS 251
             HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL CARCS+S
Sbjct:   196 HLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPCARCSAS 255

Query:   252 GVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGMMMASEHDPRIDPFD 311
             GVCLS+DPI+   A+N  ++V TT+RC NCSGAGKVMCP+CLCTGM+ ASEHDPR DPFD
Sbjct:   256 GVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGMVTASEHDPRFDPFD 315

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2151556 AT5G61670 "AT5G61670" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 154/254 (60%), Positives = 181/254 (71%)

Query:    58 SSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117
             S+D   + F IIEGPET+QDF +MQL+EI+DNI+ RRN+IF  MEE+RRLR+QQRIK  +
Sbjct:    55 SADKFASGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTE 114

Query:   118 VXXXXXXXXXXXXXXXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKL 177
             +                    FLP +T   LK  Y T               APTLELKL
Sbjct:   115 LGIINEEQEHELPNFPSFIP-FLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKL 173

Query:   178 GLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYC 237
             G+GGTSY DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM++E NNV+QQE KRCKYC
Sbjct:   174 GIGGTSYADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYC 233

Query:   238 HGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGM 297
              G+GYLACARCSS+G  +  +P+S     N  L  P T+RC NCSGAGKVMCP+CLCTGM
Sbjct:   234 LGTGYLACARCSSTGALVLTEPVSAIAGGNHSLSPPKTERCSNCSGAGKVMCPTCLCTGM 293

Query:   298 MMASEHDPRIDPFD 311
              MASEHDPRIDPFD
Sbjct:   294 AMASEHDPRIDPFD 307

GO:0009536 "plastid" evidence=ISS

GO:0009661 "chromoplast organization" evidence=ISS

GO:0016120 "carotene biosynthetic process" evidence=ISS

TAIR|locus:2044812 EDA3 "embryo sac development arrest 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
 Identities = 27/98 (27%), Positives = 44/98 (44%)

Query:   203 IVASFSGGAVGVISALMLIEANNVEQQEKK---RCKYCHGSGYLACARCSSSGVCLSVDP 259
             + A     A  + ++   +   +    +KK    C+ C GSG + C  C  +G   +   
Sbjct:    68 MTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCGGTGKWKA--- 124

Query:   260 ISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCTGM 297
             ++   A +    V     CPNC G GK++CP CL TG+
Sbjct:   125 LNRKRAKD----VYEFTECPNCYGRGKLVCPVCLGTGL 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       276   0.00079  115 3  11 22  0.48    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.73u 0.13s 25.86t   Elapsed:  00:00:01
  Total cpu time:  25.74u 0.13s 25.87t   Elapsed:  00:00:01
  Start:  Mon May 20 20:58:10 2013   End:  Mon May 20 20:58:11 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009561 "megagametogenesis" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-05
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	7e-05
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	7e-05
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	1e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	1e-04
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	5e-04
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	0.002
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	0.003

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 18/82 (21%)

Query: 225 NVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQR 277
            +E  +++ C  CHGSG         C+ C  SG  +SV+        N P  RV   Q 
Sbjct: 137 EIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQ-VSVE-------QNTPFGRVVNRQT 188

Query: 278 CPNCSGAGKVM---CPSCLCTG 296
           CP+C+G G+ +   CP+C   G
Sbjct: 189 CPHCNGTGQEIKEKCPTCHGKG 210

Length = 376

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 226 VEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAG 285
           +  Q+ + C+ CHGSG   C   +S   C           S G   + TT  CP C G G
Sbjct: 139 IRIQKLETCEECHGSG---CEPGTSPTTCPQCGGSGQVTQSQGFFSIRTT--CPRCRGMG 193

Query: 286 KVM---CPSCLCTGMMMASE 302
           KV+   C +C   G +  S+
Sbjct: 194 KVIVSPCKTCHGQGRVRVSK 213

Length = 366

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 223 ANNVEQQEKKR----CKYCHGSG------YLACARCSSSGVCLSVDPISTSNASNGPLRV 272
           +  VE++ K +    C +CHG+G         C  C  SG           N   G ++ 
Sbjct: 142 STGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSV-----TRVQNTILGTMQT 196

Query: 273 PTTQRCPNCSGAGKVM---CPSCLCTGMMMASE 302
            +T  CP C+G GK++   C  C   G++   E
Sbjct: 197 QST--CPTCNGEGKIIKKKCKKCGGEGIVYGEE 227

Length = 386

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 16/68 (23%)

Query: 234 CKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287
           C  C+GSG         C  C  SG               G     T   CP C G GK+
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQV-------RQVQGTGFGFFQTQTTCPTCGGTGKI 53

Query: 288 M---CPSC 292
           +   CP C
Sbjct: 54  IKDPCPKC 61

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 26/96 (27%)

Query: 232 KRCKYCHGSGYL-----ACARCSSSGVCLSVDPISTSNASNGPL---------------- 270
           K+C  C G G +      C  C  +G     DP   +N S   +                
Sbjct: 3   KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGK 62

Query: 271 -RVPTTQRCPNCSGAGKVM-CPSCLCTGMMMASEHD 304
             V     CP C G GKV+ C  C   G ++    +
Sbjct: 63  GTVTVYDTCPECGGTGKVLTCDIC---GDIIVPWEE 95

Length = 715

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 16/77 (20%)

Query: 225 NVEQQEKKRCKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRC 278
            +E   K+ C+ CHG+G         C  C  +G               G  +   T  C
Sbjct: 137 EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQV-----RRQQGTPFGFFQQQQT--C 189

Query: 279 PNCSGAGKVM---CPSC 292
           P C G GK++   C +C
Sbjct: 190 PTCGGEGKIIKEPCSTC 206

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 18/73 (24%)

Query: 234 CKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPL-RVPTTQRCPNCSGAGK 286
           C  C+GSG       + C +C  SGV ++VD       +  PL  +     C  C G GK
Sbjct: 149 CHTCNGSGAKPGTSPVTCGKCHGSGV-ITVD-------TQTPLGMMRRQVTCDVCHGTGK 200

Query: 287 VM---CPSCLCTG 296
            +   C +C  TG
Sbjct: 201 EIKEPCQTCHGTG 213

Length = 380

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 16/68 (23%)

Query: 234 CKYCHGSGYLA------CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287
           C +CHG+G         C +C+ SG                       Q CP C G GK+
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQ-------VVKRQRTPGGVFQMQQTCPKCGGTGKI 53

Query: 288 M---CPSC 292
           +   C  C
Sbjct: 54  IKDPCKVC 61

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.17
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.14
PRK14282	369	chaperone protein DnaJ; Provisional	99.05
PRK14298	377	chaperone protein DnaJ; Provisional	99.04
PRK14296	372	chaperone protein DnaJ; Provisional	99.03
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.0
PRK14278	378	chaperone protein DnaJ; Provisional	99.0
PRK14280	376	chaperone protein DnaJ; Provisional	98.96
PRK14276	380	chaperone protein DnaJ; Provisional	98.96
PRK14281	397	chaperone protein DnaJ; Provisional	98.96
PRK14279	392	chaperone protein DnaJ; Provisional	98.95
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.95
PRK14286	372	chaperone protein DnaJ; Provisional	98.94
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.93
PRK14277	386	chaperone protein DnaJ; Provisional	98.93
PRK14285	365	chaperone protein DnaJ; Provisional	98.92
PRK10767	371	chaperone protein DnaJ; Provisional	98.92
PRK14297	380	chaperone protein DnaJ; Provisional	98.91
PRK14301	373	chaperone protein DnaJ; Provisional	98.91
PRK14287	371	chaperone protein DnaJ; Provisional	98.9
PRK14290	365	chaperone protein DnaJ; Provisional	98.89
PRK14284	391	chaperone protein DnaJ; Provisional	98.89
PRK14288	369	chaperone protein DnaJ; Provisional	98.88
PRK14293	374	chaperone protein DnaJ; Provisional	98.88
PRK14295	389	chaperone protein DnaJ; Provisional	98.88
PRK14300	372	chaperone protein DnaJ; Provisional	98.87
PRK14294	366	chaperone protein DnaJ; Provisional	98.86
PRK14289	386	chaperone protein DnaJ; Provisional	98.85
KOG2813	406	consensus Predicted molecular chaperone, contains	98.84
PRK14283	378	chaperone protein DnaJ; Provisional	98.84
PRK14291	382	chaperone protein DnaJ; Provisional	98.83
PRK14292	371	chaperone protein DnaJ; Provisional	98.78
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.37
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.16
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.87
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.64
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.44
PRK14279	392	chaperone protein DnaJ; Provisional	97.07
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.99
PRK14284	391	chaperone protein DnaJ; Provisional	96.93
PRK14296	372	chaperone protein DnaJ; Provisional	96.89
PRK14300	372	chaperone protein DnaJ; Provisional	96.86
PRK14282	369	chaperone protein DnaJ; Provisional	96.84
PRK14301	373	chaperone protein DnaJ; Provisional	96.83
PRK14298	377	chaperone protein DnaJ; Provisional	96.83
PRK14295	389	chaperone protein DnaJ; Provisional	96.83
PRK14286	372	chaperone protein DnaJ; Provisional	96.83
PRK14297	380	chaperone protein DnaJ; Provisional	96.78
PRK14276	380	chaperone protein DnaJ; Provisional	96.76
PRK14278	378	chaperone protein DnaJ; Provisional	96.76
PRK10767	371	chaperone protein DnaJ; Provisional	96.76
PRK14285	365	chaperone protein DnaJ; Provisional	96.75
PRK14280	376	chaperone protein DnaJ; Provisional	96.68
PRK14287	371	chaperone protein DnaJ; Provisional	96.68
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.66
PRK14277	386	chaperone protein DnaJ; Provisional	96.62
PRK14289	386	chaperone protein DnaJ; Provisional	96.62
PRK14288	369	chaperone protein DnaJ; Provisional	96.6
KOG2813	406	consensus Predicted molecular chaperone, contains	96.6
PRK14294	366	chaperone protein DnaJ; Provisional	96.57
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.54
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.46
PRK14290	365	chaperone protein DnaJ; Provisional	96.45
PRK14281	397	chaperone protein DnaJ; Provisional	96.41
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.4
PRK14291	382	chaperone protein DnaJ; Provisional	96.35
PRK14293	374	chaperone protein DnaJ; Provisional	96.26
PRK14283	378	chaperone protein DnaJ; Provisional	96.05
PRK14292	371	chaperone protein DnaJ; Provisional	96.05
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.84
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.45
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	95.19
PRK03564	309	formate dehydrogenase accessory protein FdhE; Prov	92.2
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	85.19
PF04216	290	FdhE: Protein involved in formate dehydrogenase fo	85.18
COG1198	730	PriA Primosomal protein N' (replication factor Y)	84.89
TIGR01562	305	FdhE formate dehydrogenase accessory protein FdhE.	84.69
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	83.93
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	80.82
TIGR00595	505	priA primosomal protein N'. All proteins in this f	80.53

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.5e-11  Score=120.77  Aligned_cols=69  Identities=30%  Similarity=0.678  Sum_probs=58.4

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      ..+++.+...|+.|+|+|.      .+|++|+|+|++...+.+         +..+.+++|++|+|+|++   +|++|+|
T Consensus       135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~---------g~~~~~~~C~~C~G~G~~i~~pC~~C~G  205 (371)
T COG0484         135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT---------GFFSFQQTCPTCNGTGKIIKDPCGKCKG  205 (371)
T ss_pred             eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee---------eEEEEEEECCCCccceeECCCCCCCCCC
Confidence            4667788999999999975      699999999999876543         235678999999999998   8999999


Q ss_pred             ceEEece
Q 021514          295 TGMMMAS  301 (311)
Q Consensus       295 tG~v~~s  301 (311)
                      .|++...
T Consensus       206 ~G~v~~~  212 (371)
T COG0484         206 KGRVKKK  212 (371)
T ss_pred             CCeEeee
Confidence            9997644

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.14  E-value=2.5e-11  Score=101.71  Aligned_cols=74  Identities=24%  Similarity=0.539  Sum_probs=59.3

Q ss_pred             hhhhhhhccee-eccccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeCCCCCC
Q 021514          216 SALMLIEANNV-EQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCLC  294 (311)
Q Consensus       216 sal~vvE~nnv-k~q~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~CptC~G  294 (311)
                      ..+++..+++. +.+....|..|+|+|..+|..|+|+|.+.....          ...+.+.+|++|.|+|+..|+.|+|
T Consensus        25 ~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~----------g~~q~~~~C~~C~G~Gk~~C~~C~G   94 (111)
T PLN03165         25 PVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELG----------GGEKEVSKCINCDGAGSLTCTTCQG   94 (111)
T ss_pred             cEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC----------CcEEEEEECCCCCCcceeeCCCCCC
Confidence            34455555555 556789999999999999999999999875431          1235688999999999999999999


Q ss_pred             ceEEe
Q 021514          295 TGMMM  299 (311)
Q Consensus       295 tG~v~  299 (311)
                      +|.+.
T Consensus        95 ~G~~~   99 (111)
T PLN03165         95 SGIQP   99 (111)
T ss_pred             CEEEe
Confidence            99874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.05  E-value=1.2e-10  Score=113.29  Aligned_cols=98  Identities=20%  Similarity=0.483  Sum_probs=74.7

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|.    |.|..            .+++..+.+.|..|+|+|.      .+|+.|+|+|.+...++++.
T Consensus       126 ~di~~~l~~slee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~  189 (369)
T PRK14282        126 EDIRYEIEVTLSDL----INGAE------------IPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFF  189 (369)
T ss_pred             CCeEEEEEEEHHHh----cCCeE------------EEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccC
Confidence            35566666666655    66654            4566788899999999996      58999999999987665542


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             +..+.+.+|+.|+|+|++   .|+.|.|.|.+... ..++.|.|
T Consensus       190 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  233 (369)
T PRK14282        190 -------GVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA  233 (369)
T ss_pred             -------cceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence                   234567899999999987   89999999988753 45666655

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.04  E-value=1.2e-10  Score=113.75  Aligned_cols=79  Identities=25%  Similarity=0.614  Sum_probs=63.3

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      .++...+...|..|+|+|.      .+|+.|+|+|.+...++..       .+..+.+.+|+.|.|+|++   +|+.|+|
T Consensus       134 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-------~g~~~~~~~C~~C~G~G~~~~~~C~~C~G  206 (377)
T PRK14298        134 KDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTP-------LGQFVTTTTCSTCHGRGQVIESPCPVCSG  206 (377)
T ss_pred             EEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecC-------ceeEEEEEeCCCCCCCCcccCCCCCCCCC
Confidence            4566778899999999996      6899999999998765432       2345678999999999987   8999999


Q ss_pred             ceEEece-eeCCCcCC
Q 021514          295 TGMMMAS-EHDPRIDP  309 (311)
Q Consensus       295 tG~v~~s-EhD~riDP  309 (311)
                      .|.+... +.++.|.|
T Consensus       207 ~g~v~~~~~l~V~Ipp  222 (377)
T PRK14298        207 TGKVRKTRKITVNVPA  222 (377)
T ss_pred             ccEEEEEEEEEecCCC
Confidence            9999743 55666655

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.03  E-value=1.3e-10  Score=113.36  Aligned_cols=79  Identities=25%  Similarity=0.587  Sum_probs=62.4

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      ..++..+...|..|+|+|.      .+|+.|+|+|.+...++++       ++..+.+.+|+.|+|+|++   +|+.|.|
T Consensus       142 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~q~~~~C~~C~G~G~~~~~~C~~C~G  214 (372)
T PRK14296        142 KIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMG-------FFQFQQSAKCNVCNGAGKIIKNKCKNCKG  214 (372)
T ss_pred             EEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEecc-------ceEEEEEecCCCcCCcceeecccccCCCC
Confidence            4566778899999999996      5799999999998766543       2334567899999999987   8999999


Q ss_pred             ceEEece-eeCCCcCC
Q 021514          295 TGMMMAS-EHDPRIDP  309 (311)
Q Consensus       295 tG~v~~s-EhD~riDP  309 (311)
                      .|.+... +-.+.|.|
T Consensus       215 ~g~v~~~~~~~V~Ip~  230 (372)
T PRK14296        215 KGKYLERKKIEVNIPK  230 (372)
T ss_pred             ceEEEEEEEEEEEECC
Confidence            9988643 55555554

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.00  E-value=2e-10  Score=110.60  Aligned_cols=98  Identities=23%  Similarity=0.543  Sum_probs=74.5

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.+++.|-    |.|..            .++...+.+.|..|+|+|.      ..|..|+|+|.+.....++.
T Consensus       117 ~d~~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~  180 (354)
T TIGR02349       117 EDLRYDLELTFEEA----VFGVE------------KEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPF  180 (354)
T ss_pred             CCeEEEEEEEHHHH----hCCee------------EEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccC
Confidence            45666677776665    66654            4566788899999999995      58999999999987665432


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             +..+.+.+|+.|.|+|++   +|+.|.|.|.+... ..++.|.|
T Consensus       181 -------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  224 (354)
T TIGR02349       181 -------GFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPA  224 (354)
T ss_pred             -------CceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECC
Confidence                   334557899999999987   89999999998754 45555554

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=2.1e-10  Score=112.04  Aligned_cols=98  Identities=29%  Similarity=0.537  Sum_probs=72.2

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|-    |.|..            ..+...+...|..|+|+|.      .+|+.|+|+|.+...+... 
T Consensus       113 ~d~~~~l~vtLee~----~~G~~------------~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-  175 (378)
T PRK14278        113 SDSLLRMRLDLEEC----ATGVT------------KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSF-  175 (378)
T ss_pred             CCeEEEEEEEHHHh----cCCeE------------EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEecc-
Confidence            34555566665554    55554            4566778899999999996      5899999999987765432 


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                            ++..+...+|+.|+|.|++   +|+.|.|.|.+... ..++.|.|
T Consensus       176 ------~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  220 (378)
T PRK14278        176 ------LGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPA  220 (378)
T ss_pred             ------ceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECC
Confidence                  2334457899999999987   89999999998654 45556655

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=3.3e-10  Score=110.56  Aligned_cols=79  Identities=30%  Similarity=0.682  Sum_probs=61.8

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      .+++..+...|..|+|+|.      ..|+.|+|+|.+...+.++.       +..+.+.+|+.|.|+|++   +|+.|+|
T Consensus       136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-------g~~~~~~~C~~C~G~G~~~~~~C~~C~G  208 (376)
T PRK14280        136 KEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPF-------GRVVNRQTCPHCNGTGQEIKEKCPTCHG  208 (376)
T ss_pred             eEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCC-------ceEEEEEEcCCCCCCCceecCCCCCCCC
Confidence            4567788899999999995      58999999999877654432       233467899999999987   8999999


Q ss_pred             ceEEece-eeCCCcCC
Q 021514          295 TGMMMAS-EHDPRIDP  309 (311)
Q Consensus       295 tG~v~~s-EhD~riDP  309 (311)
                      .|.+... +.++.|.|
T Consensus       209 ~g~v~~~~~i~V~Ip~  224 (376)
T PRK14280        209 KGKVRKRKKINVKIPA  224 (376)
T ss_pred             ceEEEEEEEEEEEeCC
Confidence            9998643 44555554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=3.2e-10  Score=110.75  Aligned_cols=79  Identities=27%  Similarity=0.542  Sum_probs=61.6

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      .++...+.+.|..|+|+|.      .+|+.|+|+|.+...+++..       +..+.+.+|+.|.|+|++   +|+.|.|
T Consensus       139 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-------G~~~~~~~C~~C~G~G~~~~~~C~~C~G  211 (380)
T PRK14276        139 KEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPL-------GMMRRQVTCDVCHGTGKEIKEPCQTCHG  211 (380)
T ss_pred             EEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCC-------ceEEEEEECCCCCCCCccccCCCCCCCC
Confidence            4566788899999999995      58999999999987655432       233457899999999987   8999999


Q ss_pred             ceEEece-eeCCCcCC
Q 021514          295 TGMMMAS-EHDPRIDP  309 (311)
Q Consensus       295 tG~v~~s-EhD~riDP  309 (311)
                      .|.+... .-++.|.|
T Consensus       212 ~g~~~~~~~l~V~Ip~  227 (380)
T PRK14276        212 TGHEKQAHTVSVKIPA  227 (380)
T ss_pred             ceEEEEEEEEEEEeCC
Confidence            9998643 34555554

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=3.4e-10  Score=111.24  Aligned_cols=79  Identities=24%  Similarity=0.605  Sum_probs=63.3

Q ss_pred             ceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCc
Q 021514          224 NNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCT  295 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~Gt  295 (311)
                      .+++..+.+.|..|+|+|.     ..|..|+|+|.+...+.++.       +..+.+.+|+.|.|+|++   +|+.|+|.
T Consensus       156 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~-------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  228 (397)
T PRK14281        156 KTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMF-------GQFVNITACPTCGGEGRVVKDRCPACYGE  228 (397)
T ss_pred             EEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEeccc-------ceEEEEEecCCCcceeeeeCCCCCCCCCC
Confidence            4567788899999999996     57999999999977655432       233457799999999987   89999999


Q ss_pred             eEEece-eeCCCcCC
Q 021514          296 GMMMAS-EHDPRIDP  309 (311)
Q Consensus       296 G~v~~s-EhD~riDP  309 (311)
                      |.+... +.++.|.|
T Consensus       229 g~v~~~~~~~V~Ip~  243 (397)
T PRK14281        229 GIKQGEVTVKVTVPA  243 (397)
T ss_pred             ccEecceEEEEecCC
Confidence            999754 56677765

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=4.3e-10  Score=110.48  Aligned_cols=75  Identities=29%  Similarity=0.643  Sum_probs=60.5

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      .+++..+...|..|+|+|.      .+|+.|+|+|.+......           .+.+.+|+.|.|+|++   +|+.|.|
T Consensus       166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~-----------~~~~~~C~~C~G~G~~i~~~C~~C~G  234 (392)
T PRK14279        166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGA-----------FGFSEPCTDCRGTGSIIEDPCEECKG  234 (392)
T ss_pred             EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecc-----------eEEEEecCCCCceeEEeCCcCCCCCC
Confidence            4566778899999999996      589999999998765321           2467999999999987   8999999


Q ss_pred             ceEEece-eeCCCcCC
Q 021514          295 TGMMMAS-EHDPRIDP  309 (311)
Q Consensus       295 tG~v~~s-EhD~riDP  309 (311)
                      .|.+... +..+.|.|
T Consensus       235 ~g~v~~~~~~~V~Ip~  250 (392)
T PRK14279        235 TGVTTRTRTINVRIPP  250 (392)
T ss_pred             CeEEEEeeeeEEEeCC
Confidence            9999744 56666655

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.95  E-value=4.7e-10  Score=111.57  Aligned_cols=97  Identities=20%  Similarity=0.534  Sum_probs=71.2

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSN  264 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~  264 (311)
                      ++.+++.|++.|.    |.|..            .+++..+...|..|+|+|.     .+|+.|+|+|.+....+++   
T Consensus       125 di~~~l~vtLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g---  185 (421)
T PTZ00037        125 DIVSHLKVTLEQI----YNGAM------------RKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMG---  185 (421)
T ss_pred             CEEEEeeeeHHHH----hCCCc------------eEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeec---
Confidence            4455555555544    55554            4566778899999999996     5899999999876654432   


Q ss_pred             CCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEece-eeCCCcCC
Q 021514          265 ASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       265 g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~~s-EhD~riDP  309 (311)
                          ++..+.+.+|+.|+|+|++     +|++|+|.|.+... +..+.|+|
T Consensus       186 ----~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~  232 (421)
T PTZ00037        186 ----SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDK  232 (421)
T ss_pred             ----ceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCC
Confidence                1334568899999999986     69999999999754 56666655

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.94  E-value=4.1e-10  Score=109.82  Aligned_cols=94  Identities=26%  Similarity=0.550  Sum_probs=71.4

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|-    |.|..            .+++..+.+.|..|+|+|.      .+|+.|+|+|.+.....   
T Consensus       124 ~di~~~l~vtLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G---  184 (372)
T PRK14286        124 SDLRYNLEVSLEDA----ALGRE------------YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQG---  184 (372)
T ss_pred             CCeeEEEEEEHHHH----hCCee------------EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEec---
Confidence            34556666665554    56654            4566788899999999996      68999999999876431   


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEec-eeeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMA-SEHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~-sEhD~riDP  309 (311)
                              ..+.+.+|+.|.|+|++   +|+.|+|.|.+.. .+.++.|.|
T Consensus       185 --------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  227 (372)
T PRK14286        185 --------FFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPP  227 (372)
T ss_pred             --------eEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECC
Confidence                    22467899999999987   8999999999875 356666665

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.93  E-value=8.5e-10  Score=83.51  Aligned_cols=56  Identities=32%  Similarity=0.798  Sum_probs=44.2

Q ss_pred             ccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee----eCCCCCCce
Q 021514          234 CKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV----MCPSCLCTG  296 (311)
Q Consensus       234 C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV----~CptC~GtG  296 (311)
                      |..|+|+|.      .+|+.|+|+|++....+..       .+..+.+.+|+.|+|+|++    +|+.|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-------~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTP-------GGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESS-------STTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCC-------CeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            889999997      5899999999998876532       3556789999999999998    699999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.93  E-value=5.2e-10  Score=109.50  Aligned_cols=97  Identities=23%  Similarity=0.522  Sum_probs=71.3

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      ++++.+.+++.|-    |.|..            .++...+.+.|..|+|+|.      .+|+.|+|+|.+...+.++. 
T Consensus       130 di~~~l~vtLee~----~~G~~------------~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-  192 (386)
T PRK14277        130 DIRYDLELTFEEA----AFGTE------------KEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPF-  192 (386)
T ss_pred             CEEEEEEEEHHHH----hCCeE------------EEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccC-
Confidence            4555555555544    55554            4566788899999999995      58999999999887655432 


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                            +..+...+|+.|.|+|++   +|+.|+|.|.+... +..+.|.|
T Consensus       193 ------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  236 (386)
T PRK14277        193 ------GRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPA  236 (386)
T ss_pred             ------ceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCC
Confidence                  233456799999999987   89999999998543 34555554

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.92  E-value=5.9e-10  Score=108.48  Aligned_cols=94  Identities=26%  Similarity=0.535  Sum_probs=69.8

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      +++++++.+++.|-    |.|..            .+++..+...|..|+|+|.      ..|..|+|+|++....    
T Consensus       120 ~di~~~l~vtlee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----  179 (365)
T PRK14285        120 QDLTYQIEISLEDA----YLGYK------------NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG----  179 (365)
T ss_pred             CCEEEEEEEEHHHh----hCCeE------------EEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecC----
Confidence            34555555555544    45543            4567778899999999995      5799999999887421    


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             +..+.+.+|+.|.|+|++   +|+.|.|.|.+... +.++.|.|
T Consensus       180 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  223 (365)
T PRK14285        180 -------GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPA  223 (365)
T ss_pred             -------ceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECC
Confidence                   223578999999999987   89999999998643 55666665

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.92  E-value=7.8e-10  Score=107.42  Aligned_cols=95  Identities=23%  Similarity=0.520  Sum_probs=72.7

Q ss_pred             hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCC
Q 021514          188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIS  261 (311)
Q Consensus       188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s  261 (311)
                      ..++++++.|++.|.    |.|..            .+++..+.+.|..|+|+|.      ..|+.|+|+|.+.....  
T Consensus       115 g~di~~~l~vsLee~----~~G~~------------~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g--  176 (371)
T PRK10767        115 GADLRYNMEITLEEA----VRGVT------------KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQG--  176 (371)
T ss_pred             CCCeEEEEEeehHHh----hCCee------------EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeec--
Confidence            345667777777666    66654            4566778899999999996      48999999999875431  


Q ss_pred             CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                               ..+.+.+|+.|.|+|++   .|+.|.|.|.+... +.++.|.|
T Consensus       177 ---------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  219 (371)
T PRK10767        177 ---------FFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPA  219 (371)
T ss_pred             ---------eEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCC
Confidence                     12467799999999987   89999999998643 46666655

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.91  E-value=7e-10  Score=108.27  Aligned_cols=98  Identities=19%  Similarity=0.483  Sum_probs=71.6

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|-    |.|..            .++...+...|..|+|+|.      .+|+.|+|+|.+...++++.
T Consensus       122 ~di~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~  185 (380)
T PRK14297        122 ADIEYTINLTFEEA----VFGVE------------KEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL  185 (380)
T ss_pred             CCEEEEEEEEHHHh----cCCeE------------EEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCC
Confidence            35566666665554    55554            4566778899999999995      58999999999887654432


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             +..+.+.+|+.|.|+|++   +|+.|+|.|.+... +-.+.|.|
T Consensus       186 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~  229 (380)
T PRK14297        186 -------GSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPA  229 (380)
T ss_pred             -------ceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCC
Confidence                   234568899999999987   89999999987533 34444443

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.91  E-value=6e-10  Score=108.72  Aligned_cols=94  Identities=26%  Similarity=0.537  Sum_probs=71.6

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|.    |.|..            .+++..+...|..|+|+|.      .+|+.|+|+|.+....    
T Consensus       118 ~di~~~l~vtLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----  177 (373)
T PRK14301        118 SDLRYNLTVSFRQA----AKGDE------------VTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ----  177 (373)
T ss_pred             CCEEEEEeccHHHH----hCCce------------EEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe----
Confidence            45566666666655    66654            4566778899999999996      5799999999987542    


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEec-eeeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMA-SEHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~-sEhD~riDP  309 (311)
                             +..+.+.+|+.|+|+|++   .|+.|+|.|.+.. .+..+.|.|
T Consensus       178 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  221 (373)
T PRK14301        178 -------GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA  221 (373)
T ss_pred             -------eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence                   123468999999999987   8999999999864 356666665

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.90  E-value=7.2e-10  Score=108.11  Aligned_cols=98  Identities=24%  Similarity=0.531  Sum_probs=71.3

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|-    |.|..            .++...+...|..|+|+|.      .+|+.|+|+|.+...+.++.
T Consensus       112 ~d~~~~l~vslee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~  175 (371)
T PRK14287        112 ADLQYTMTLEFKEA----VFGKE------------TEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPF  175 (371)
T ss_pred             CCEEEEEEEEHHHh----cCCeE------------EEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCC
Confidence            34555555555554    55544            4567788899999999995      57999999999887655432


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             +..+...+|+.|.|+|++   +|+.|.|.|.+... +-++.|.|
T Consensus       176 -------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  219 (371)
T PRK14287        176 -------GRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPA  219 (371)
T ss_pred             -------ceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECC
Confidence                   223457899999999987   89999999998643 34555544

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.89  E-value=9.3e-10  Score=106.90  Aligned_cols=97  Identities=24%  Similarity=0.585  Sum_probs=70.4

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSN  264 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~  264 (311)
                      ++++.+.|++.|.    |.|..            .+++..+.+.|..|+|+|.     ..|+.|+|+|.+......+   
T Consensus       124 di~~~l~lsLee~----~~G~~------------~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g---  184 (365)
T PRK14290        124 DIYTNLDISLEDA----YYGTE------------KRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQG---  184 (365)
T ss_pred             CEEEEEEecHHHh----cCCEE------------EEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccC---
Confidence            4555555555554    55554            4567788899999999996     5899999999887654321   


Q ss_pred             CCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          265 ASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       265 g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                          +..++...+|+.|.|.|++   +|+.|.|.|.+... +-.+.|.|
T Consensus       185 ----~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  229 (365)
T PRK14290        185 ----FFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPK  229 (365)
T ss_pred             ----eEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECC
Confidence                1223456899999999987   89999999998754 45555544

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.89  E-value=7.1e-10  Score=108.71  Aligned_cols=75  Identities=28%  Similarity=0.610  Sum_probs=59.8

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      .+++..+...|..|+|+|.      .+|+.|+|+|.+.....           ..+.+.+|+.|+|.|++   +|+.|.|
T Consensus       151 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G-----------~~~~~~~C~~C~G~G~~~~~~C~~C~G  219 (391)
T PRK14284        151 KELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRG-----------FFSMASTCPECGGEGRVITDPCSVCRG  219 (391)
T ss_pred             EEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEec-----------eEEEEEECCCCCCCCcccCCcCCCCCC
Confidence            4566778899999999996      57999999999875431           13467899999999987   8999999


Q ss_pred             ceEEece-eeCCCcCC
Q 021514          295 TGMMMAS-EHDPRIDP  309 (311)
Q Consensus       295 tG~v~~s-EhD~riDP  309 (311)
                      .|.+... +-++.|.|
T Consensus       220 ~g~v~~~~~l~V~Ip~  235 (391)
T PRK14284        220 QGRIKDKRSVHVHIPA  235 (391)
T ss_pred             cceecceEEEEEEECC
Confidence            9998643 55666655

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.88  E-value=1.2e-09  Score=106.52  Aligned_cols=94  Identities=23%  Similarity=0.505  Sum_probs=69.2

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      .++.+++.|++.|.    |.|..            .+++..+.+.|..|+|+|.     .+|+.|+|+|.+...+.    
T Consensus       114 ~di~~~l~vslee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g----  173 (369)
T PRK14288        114 PDYLQTIELSFKEA----VFGCK------------KTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQG----  173 (369)
T ss_pred             CCeeEeccccHHHH----hCCeE------------EEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEec----
Confidence            34555556665554    55554            4566778889999999996     58999999999875431    


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             ..+...+|+.|.|+|++   +|+.|.|.|.+... ..++.|.|
T Consensus       174 -------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~  216 (369)
T PRK14288        174 -------FMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPE  216 (369)
T ss_pred             -------eEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCC
Confidence                   12456799999999987   89999999998753 44555544

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.88  E-value=8.9e-10  Score=107.34  Aligned_cols=97  Identities=22%  Similarity=0.539  Sum_probs=71.1

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      ++.+++.+++.|.    |.|..            .+++..+.+.|..|+|+|.      .+|+.|+|+|.+.....+.. 
T Consensus       118 di~~~l~vsLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-  180 (374)
T PRK14293        118 DLRYDLKLDFREA----IFGGE------------KEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPF-  180 (374)
T ss_pred             CeEEEEEeeHHHH----hCCce------------EEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCc-
Confidence            4445555555554    55543            4566788899999999986      47999999999876654432 


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEecee-eCCCcCC
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMASE-HDPRIDP  309 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~sE-hD~riDP  309 (311)
                            +..+...+|+.|.|.|++   .|+.|.|.|.+...+ -++.|.|
T Consensus       181 ------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp  224 (374)
T PRK14293        181 ------GSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA  224 (374)
T ss_pred             ------ceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence                  233456899999999987   899999999987553 3555554

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.88  E-value=9.5e-10  Score=107.95  Aligned_cols=93  Identities=24%  Similarity=0.530  Sum_probs=69.1

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      ++++++.|++.|-    |.|..            ..++..+...|..|+|+|.      .+|+.|+|+|.+.....    
T Consensus       141 di~~~l~lsLee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g----  200 (389)
T PRK14295        141 DVESEVTLSFTEA----IDGAT------------VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSG----  200 (389)
T ss_pred             CEEEEEEEEHHHH----hCCce------------EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEec----
Confidence            4455555555544    55543            4566788899999999995      68999999999876531    


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             ..+.+.+|+.|.|+|++   +|+.|.|.|.+... ..++.|.|
T Consensus       201 -------~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  243 (389)
T PRK14295        201 -------GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA  243 (389)
T ss_pred             -------ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence                   12467899999999987   89999999998753 45566654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=1.1e-09  Score=106.74  Aligned_cols=95  Identities=23%  Similarity=0.505  Sum_probs=71.1

Q ss_pred             hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCC
Q 021514          188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIS  261 (311)
Q Consensus       188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s  261 (311)
                      ..++++++.+++.|.    |.|..            .++...+.+.|..|+|+|.      .+|+.|+|+|.+....   
T Consensus       118 g~di~~~l~~sLee~----~~G~~------------k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~---  178 (372)
T PRK14300        118 GSDLKYNLTINLEEA----FHGIE------------KNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ---  178 (372)
T ss_pred             CCCeeEEEEEEHHHH----hCCce------------EEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee---
Confidence            345666666666655    56654            4566778899999999995      6899999999987532   


Q ss_pred             CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                              +..+...+|+.|.|.|++   +|++|+|.|.+... +..+.|.|
T Consensus       179 --------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  222 (372)
T PRK14300        179 --------GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPA  222 (372)
T ss_pred             --------ceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECC
Confidence                    122467799999999987   89999999998653 44555554

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.86  E-value=1.5e-09  Score=105.41  Aligned_cols=95  Identities=26%  Similarity=0.558  Sum_probs=71.5

Q ss_pred             hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCC
Q 021514          188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIS  261 (311)
Q Consensus       188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s  261 (311)
                      ..++++++.|++.|.    |.|..            .+++..+.+.|..|+|+|.      ..|+.|+|+|.+....   
T Consensus       117 g~d~~~~l~lslee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---  177 (366)
T PRK14294        117 GADLRYDLTLPFLEA----AFGTE------------KEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---  177 (366)
T ss_pred             CCCceEEEEeeHHHh----cCCeE------------EEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---
Confidence            345666666666655    66654            4566778889999999996      4899999999987532   


Q ss_pred             CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                              +..+.+.+|+.|.|+|++   .|+.|.|.|.+... ..++.|.|
T Consensus       178 --------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  221 (366)
T PRK14294        178 --------GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPA  221 (366)
T ss_pred             --------eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCC
Confidence                    112468899999999987   89999999998643 45556654

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.85  E-value=1.6e-09  Score=105.84  Aligned_cols=97  Identities=24%  Similarity=0.540  Sum_probs=72.2

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      ++++.+.|++.|.    |.|..            .+++..+.+.|..|+|+|.      ..|+.|+|+|.+....+... 
T Consensus       129 di~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~-  191 (386)
T PRK14289        129 DLRVKVKLNLKEI----STGVE------------KKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTIL-  191 (386)
T ss_pred             CeEEEEEEEHHHh----hCCeE------------EEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEeccc-
Confidence            4555555665555    55543            5667788899999999996      58999999999987655432 


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                            +..+...+|+.|.|.|++   .|+.|.|.|.+... ...+.|.|
T Consensus       192 ------G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  235 (386)
T PRK14289        192 ------GTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA  235 (386)
T ss_pred             ------ceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence                  233468999999999987   89999999998754 44555544

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.9e-09  Score=104.73  Aligned_cols=72  Identities=25%  Similarity=0.494  Sum_probs=57.9

Q ss_pred             ccccccccccCccccCCCCCCCce--------eeeecCCC---C---CCCCCCCCCCCceeeCCCCCcCceeeCCCCCCc
Q 021514          230 EKKRCKYCHGSGYLACARCSSSGV--------CLSVDPIS---T---SNASNGPLRVPTTQRCPNCSGAGKVMCPSCLCT  295 (311)
Q Consensus       230 ~~k~C~~C~GtG~v~C~~C~GSG~--------i~~~~~~s---~---g~g~c~~~~~q~~~~CptC~G~GkV~CptC~Gt  295 (311)
                      -.+.|+.|+|.|...|+.|+|+|.        ..+....+   .   .+..|+.|.+.+..+|++|+|+|+++|.+|.|+
T Consensus       186 ~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gt  265 (406)
T KOG2813|consen  186 IVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGT  265 (406)
T ss_pred             hhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCc
Confidence            456899999999999999999993        22222222   1   134689999999999999999999999999999


Q ss_pred             eEEece
Q 021514          296 GMMMAS  301 (311)
Q Consensus       296 G~v~~s  301 (311)
                      |.++..
T Consensus       266 gsll~~  271 (406)
T KOG2813|consen  266 GSLLNY  271 (406)
T ss_pred             cceeee
Confidence            998653

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.84  E-value=1.7e-09  Score=105.56  Aligned_cols=97  Identities=22%  Similarity=0.540  Sum_probs=71.0

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      ++++++.|++.|.    |.|..            .+++..+.+.|..|+|+|.      .+|+.|+|+|.+.......  
T Consensus       121 di~~~l~vsLed~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~--  182 (378)
T PRK14283        121 DIYTEVEITLEEA----ASGVE------------KDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTI--  182 (378)
T ss_pred             CeEEEeeeeHHHH----hCCcc------------eEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEecc--
Confidence            4555666666555    55554            4566777889999999885      5799999999998765443  


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                           ++..+...+|++|.|+|+.   +|..|.|.|.+... +-.+.|.|
T Consensus       183 -----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ipp  227 (378)
T PRK14283        183 -----LGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPA  227 (378)
T ss_pred             -----CceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECC
Confidence                 2234457899999999987   89999999998653 44444443

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.83  E-value=1.7e-09  Score=105.73  Aligned_cols=94  Identities=26%  Similarity=0.603  Sum_probs=70.3

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~  262 (311)
                      .++++++.|++.|-    |.|..            .+++..+.+.|..|+|+|.      ..|+.|+|+|.+....    
T Consensus       130 ~di~~~l~vsLee~----~~G~~------------~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----  189 (382)
T PRK14291        130 EDIYQTVEISLEEA----YTGTT------------VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG----  189 (382)
T ss_pred             CCEEEEEEEEHHHh----hCCEE------------EEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec----
Confidence            34555666665554    56654            4566778899999999995      6899999999987652    


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~GtG~v~~s-EhD~riDP  309 (311)
                             +..+.+.+|+.|+|+|.+  .|+.|+|.|.+... ...+.|.|
T Consensus       190 -------g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~  232 (382)
T PRK14291        190 -------GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPP  232 (382)
T ss_pred             -------ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCC
Confidence                   123468899999999976  89999999998753 45555554

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.78  E-value=3.3e-09  Score=103.08  Aligned_cols=98  Identities=22%  Similarity=0.484  Sum_probs=71.3

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-------ccCCCCCCCceeeeecCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-------LACARCSSSGVCLSVDPIS  261 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-------v~C~~C~GSG~i~~~~~~s  261 (311)
                      .++++.+.+++.|.    |.|..            ..+...+...|..|+|+|.       .+|..|+|+|.+.......
T Consensus       113 ~d~~~~l~~sLee~----~~G~~------------~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~  176 (371)
T PRK14292        113 DDLETEARITLEQA----RAGEE------------VEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTI  176 (371)
T ss_pred             CCeEEEEeccHHHH----cCCeE------------EEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEecc
Confidence            35556666666555    56654            3456677889999999985       5799999999987654432


Q ss_pred             CCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEece-eeCCCcCC
Q 021514          262 TSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       262 ~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~s-EhD~riDP  309 (311)
                      .       +..+...+|+.|+|.|+.   .|+.|.|.|.+... +..+.|.|
T Consensus       177 ~-------g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  221 (371)
T PRK14292        177 F-------GVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPR  221 (371)
T ss_pred             C-------ceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECC
Confidence            1       233457899999999987   89999999998754 35555544

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=3.1e-07  Score=89.75  Aligned_cols=100  Identities=18%  Similarity=0.454  Sum_probs=73.6

Q ss_pred             hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCC
Q 021514          188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~  262 (311)
                      ..++..++.+++.|.    |.|+.            .....+....|+.|+|.|.     ..|..|.|+|......+++.
T Consensus       100 g~~~~~~~~~~Le~~----y~G~s------------~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gP  163 (337)
T KOG0712|consen  100 GKDVVHQLKVTLEEL----YMGKS------------KKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGP  163 (337)
T ss_pred             CCCceEEEEEEHHHh----hcCCc------------cceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccc
Confidence            555555555555554    55543            3345677889999999885     47999999999988776653


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEec-eeeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMMA-SEHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~~-sEhD~riDP  309 (311)
                      +      +..+.+.+|..|+|+|..     .|+.|.|++.+.. .-.++.|.|
T Consensus       164 g------~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~  210 (337)
T KOG0712|consen  164 G------MVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEP  210 (337)
T ss_pred             c------ccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccC
Confidence            1      456778999999999997     9999999999863 345555544

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.16  E-value=1.2e-06  Score=90.75  Aligned_cols=70  Identities=31%  Similarity=0.695  Sum_probs=49.8

Q ss_pred             ccccccccCcc-----ccCCCCCCCceeeeecCC--CCCCCCCCCCCCCceeeCCCCCcCcee----eCCCCCCceEEec
Q 021514          232 KRCKYCHGSGY-----LACARCSSSGVCLSVDPI--STSNASNGPLRVPTTQRCPNCSGAGKV----MCPSCLCTGMMMA  300 (311)
Q Consensus       232 k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~--s~g~g~c~~~~~q~~~~CptC~G~GkV----~CptC~GtG~v~~  300 (311)
                      +.|+.|+|+|+     ..|+.|+|+|.....+.-  +.......-.......+|+.|.|.|++    .|+.|.|+|++.+
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            58999999998     479999999998543321  111111112333456799999999988    7999999999874


Q ss_pred             e
Q 021514          301 S  301 (311)
Q Consensus       301 s  301 (311)
                      -
T Consensus        83 c   83 (715)
T COG1107          83 C   83 (715)
T ss_pred             e
Confidence            3

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.87  E-value=1.4e-05  Score=60.51  Aligned_cols=39  Identities=36%  Similarity=1.020  Sum_probs=28.6

Q ss_pred             CCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEe
Q 021514          245 CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMM  299 (311)
Q Consensus       245 C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~  299 (311)
                      |+.|+|+|....                ....+|+.|+|+|++               .|+.|.|+|+++
T Consensus         1 C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKPG----------------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-ST----------------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCCC----------------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            899999998631                246899999999976               699999999997

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=3.5e-05  Score=76.41  Aligned_cols=42  Identities=36%  Similarity=0.957  Sum_probs=36.1

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-------------eCCCCCCceEEe
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-------------MCPSCLCTGMMM  299 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-------------~CptC~GtG~v~  299 (311)
                      ...|..|+|+|....                ....+|++|+|+|.+             +|++|.|+|.+.
T Consensus       142 ~~~C~~C~GsGak~g----------------t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i  196 (371)
T COG0484         142 SVTCSTCHGSGAKPG----------------TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII  196 (371)
T ss_pred             eeECCcCCCCCCCCC----------------CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence            479999999998752                247899999999964             799999999997

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.44  E-value=8.3e-05  Score=77.49  Aligned_cols=45  Identities=38%  Similarity=1.138  Sum_probs=36.0

Q ss_pred             ccccccccccCcc------------------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCc
Q 021514          230 EKKRCKYCHGSGY------------------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAG  285 (311)
Q Consensus       230 ~~k~C~~C~GtG~------------------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~G  285 (311)
                      ..+.|+.|+|+|.                        .+|+.|+|.|.+..                  ..+|+.|+|+|
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------------~~~c~~c~G~g   78 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------------YDTCPECGGTG   78 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------------EeecccCCCce
Confidence            3467999999885                        37999999998874                  57899999999


Q ss_pred             ee-eCCCC
Q 021514          286 KV-MCPSC  292 (311)
Q Consensus       286 kV-~CptC  292 (311)
                      ++ +|..|
T Consensus        79 kv~~c~~c   86 (715)
T COG1107          79 KVLTCDIC   86 (715)
T ss_pred             eEEeeccc
Confidence            87 56666

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.07  E-value=0.00036  Score=69.05  Aligned_cols=43  Identities=30%  Similarity=0.798  Sum_probs=35.4

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           +|+.|.|+|++..
T Consensus       173 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~  226 (392)
T PRK14279        173 PAPCTTCHGSGARPG----------------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE  226 (392)
T ss_pred             cccCCCCccccccCC----------------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence            468999999998642                135789999999975           7999999999864

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00098  Score=64.07  Aligned_cols=54  Identities=28%  Similarity=0.618  Sum_probs=44.1

Q ss_pred             cccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeCCCCC
Q 021514          229 QEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMCPSCL  293 (311)
Q Consensus       229 q~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~CptC~  293 (311)
                      ...-.|..|.|.++++|..|||+=.+...  .         .......+|+.|+=.|-+.|+.|.
T Consensus       227 ~~~~~C~~CGg~rFlpC~~C~GS~kv~~~--~---------~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  227 EGGGVCESCGGARFLPCSNCHGSCKVHEE--E---------EDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CCCCcCCCcCCcceEecCCCCCceeeeee--c---------cCCCcEEECcccCCCCceeCCccC
Confidence            34478999999999999999999888752  1         112357899999999999999996

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.93  E-value=0.00055  Score=67.61  Aligned_cols=43  Identities=37%  Similarity=0.864  Sum_probs=35.1

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|++..
T Consensus       158 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  211 (391)
T PRK14284        158 YKSCDACSGSGANSS----------------QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT  211 (391)
T ss_pred             eccCCCCcccccCCC----------------CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC
Confidence            468999999998542                235789999999984           7999999998753

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.89  E-value=0.00061  Score=66.99  Aligned_cols=76  Identities=24%  Similarity=0.509  Sum_probs=50.5

Q ss_pred             hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeec------cccccccccccCccc---------------cCC
Q 021514          188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ------QEKKRCKYCHGSGYL---------------ACA  246 (311)
Q Consensus       188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~------q~~k~C~~C~GtG~v---------------~C~  246 (311)
                      ..++++++.|++.|-    |.|...-+. -...+.|..++.      .....|..|+|+|.+               +|+
T Consensus       122 g~di~~~l~ltlee~----~~G~~~~i~-~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~  196 (372)
T PRK14296        122 GQSVSLDIYLTFKEL----LFGVDKIIE-LDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCN  196 (372)
T ss_pred             CCCeEEEeeccHHHh----hCCeeEEEE-EeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCC
Confidence            346667777777665    777653211 111122333333      235789999999963               799


Q ss_pred             CCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          247 RCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       247 ~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      .|+|+|.+.                   ...|+.|.|.|.+
T Consensus       197 ~C~G~G~~~-------------------~~~C~~C~G~g~v  218 (372)
T PRK14296        197 VCNGAGKII-------------------KNKCKNCKGKGKY  218 (372)
T ss_pred             CcCCcceee-------------------cccccCCCCceEE
Confidence            999999885                   3569999999965

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.86  E-value=0.00064  Score=66.73  Aligned_cols=38  Identities=32%  Similarity=0.882  Sum_probs=31.9

Q ss_pred             cccccccccCccc-----------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~v-----------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|..|+|+|.+           +|+.|+|.|.+.                   ..+|+.|.|+|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------------KNPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------------CCCCCCCCCceEE
Confidence            4689999999863           799999999885                   3569999999975

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.84  E-value=0.00085  Score=65.71  Aligned_cols=43  Identities=33%  Similarity=0.829  Sum_probs=34.7

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+               .|+.|.|+|++..
T Consensus       152 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  209 (369)
T PRK14282        152 YETCPHCGGTGVEPG----------------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG  209 (369)
T ss_pred             cccCCCCCccCCCCC----------------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence            368999999998542                135789999999964               6999999999853

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00074  Score=66.39  Aligned_cols=43  Identities=30%  Similarity=0.855  Sum_probs=34.9

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           +|+.|.|+|++..
T Consensus       144 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  197 (373)
T PRK14301        144 NVTCDDCGGSGAAPG----------------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT  197 (373)
T ss_pred             cccCCCCCCcccCCC----------------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence            368999999998642                124689999999975           7999999999863

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00066  Score=66.90  Aligned_cols=75  Identities=24%  Similarity=0.532  Sum_probs=50.2

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeecc------ccccccccccCcc---------------ccCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQ------EKKRCKYCHGSGY---------------LACAR  247 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q------~~k~C~~C~GtG~---------------v~C~~  247 (311)
                      .++++++.|++.|-    |.|..+-+. -...+.|..+...      ....|..|+|+|.               .+|+.
T Consensus       115 ~di~~~l~vslee~----~~G~~~~i~-~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~  189 (377)
T PRK14298        115 SDLRYDLYITLEEA----AFGVRKDID-VPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCST  189 (377)
T ss_pred             CCEEEEEEEEHHHh----hCCeEEEEE-EEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCC
Confidence            45666777777665    777764311 1112223334332      3478999999995               37999


Q ss_pred             CCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          248 CSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       248 C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      |+|+|.+.                   ...|+.|.|+|.+
T Consensus       190 C~G~G~~~-------------------~~~C~~C~G~g~v  210 (377)
T PRK14298        190 CHGRGQVI-------------------ESPCPVCSGTGKV  210 (377)
T ss_pred             CCCCCccc-------------------CCCCCCCCCccEE
Confidence            99999874                   3569999999975

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00084  Score=66.39  Aligned_cols=43  Identities=37%  Similarity=0.891  Sum_probs=35.2

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+           .|+.|.|+|++..
T Consensus       166 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  219 (389)
T PRK14295        166 QAPCPACSGTGAKNG----------------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD  219 (389)
T ss_pred             cccCCCCcccccCCC----------------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence            368999999998642                135789999999974           7999999999864

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00081  Score=66.09  Aligned_cols=43  Identities=30%  Similarity=0.947  Sum_probs=34.8

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|++..
T Consensus       150 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  203 (372)
T PRK14286        150 LESCVDCNGSGASKG----------------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS  203 (372)
T ss_pred             cccCCCCcCCCcCCC----------------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec
Confidence            368999999998542                124789999999965           6999999999863

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.78  E-value=0.00093  Score=65.70  Aligned_cols=43  Identities=23%  Similarity=0.730  Sum_probs=34.7

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|++               +|+.|.|+|.+..
T Consensus       148 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  205 (380)
T PRK14297        148 NENCETCNGTGAKPG----------------TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE  205 (380)
T ss_pred             eccCCCcccccccCC----------------CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence            368999999998631                135789999999964               6999999999854

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.76  E-value=0.00084  Score=66.09  Aligned_cols=43  Identities=28%  Similarity=0.671  Sum_probs=34.5

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+               +|+.|.|+|++..
T Consensus       146 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  203 (380)
T PRK14276        146 EATCHTCNGSGAKPG----------------TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK  203 (380)
T ss_pred             cccCCCCcCcccCCC----------------CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc
Confidence            468999999997542                135689999999864               6999999999863

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.76  E-value=0.00085  Score=66.06  Aligned_cols=38  Identities=32%  Similarity=0.867  Sum_probs=31.7

Q ss_pred             cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|..|+|+|.               .+|+.|+|.|.+.                   ...|+.|.|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------------PDPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------------CCCCCCCCCceeE
Confidence            468999999985               3799999999875                   3569999999975

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.76  E-value=0.00099  Score=65.16  Aligned_cols=43  Identities=35%  Similarity=0.936  Sum_probs=34.8

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                .....|+.|+|+|.+           +|+.|.|+|+...
T Consensus       142 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  195 (371)
T PRK10767        142 LVTCDTCHGSGAKPG----------------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK  195 (371)
T ss_pred             cccCCCCCCcccCCC----------------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC
Confidence            468999999997642                134689999999976           5999999999853

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.75  E-value=0.00084  Score=65.83  Aligned_cols=38  Identities=32%  Similarity=0.931  Sum_probs=31.8

Q ss_pred             cccccccccCcc-----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~-----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|..|+|+|.           .+|+.|+|.|.+.                   ..+|+.|.|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------------SNPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------------CCCCCCCCCCCEE
Confidence            468999999985           3799999999874                   3579999999965

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.68  E-value=0.00099  Score=65.50  Aligned_cols=75  Identities=25%  Similarity=0.579  Sum_probs=49.4

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeec------cccccccccccCcc---------------ccCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ------QEKKRCKYCHGSGY---------------LACAR  247 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~------q~~k~C~~C~GtG~---------------v~C~~  247 (311)
                      .++++++.+++.|-    |.|...-+. -...+.|..++.      .....|..|+|+|.               .+|+.
T Consensus       117 ~di~~~l~vtLee~----~~G~~~~i~-~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~  191 (376)
T PRK14280        117 ADLQYTMTLTFEEA----VFGKEKEIE-IPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPH  191 (376)
T ss_pred             cCEEEEEEEEHHHH----hCCceeEEE-EeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCC
Confidence            35566666666665    777653311 111222333333      23578999999985               37999


Q ss_pred             CCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          248 CSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       248 C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      |+|+|.+.                   ...|+.|.|+|.+
T Consensus       192 C~G~G~~~-------------------~~~C~~C~G~g~v  212 (376)
T PRK14280        192 CNGTGQEI-------------------KEKCPTCHGKGKV  212 (376)
T ss_pred             CCCCCcee-------------------cCCCCCCCCceEE
Confidence            99999875                   3569999999975

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.68  E-value=0.001  Score=65.32  Aligned_cols=43  Identities=28%  Similarity=0.760  Sum_probs=34.4

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+               .|+.|.|+|++..
T Consensus       138 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  195 (371)
T PRK14287        138 EETCGTCHGSGAKPG----------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK  195 (371)
T ss_pred             eccCCCCCCcccCCC----------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc
Confidence            368999999997631                135789999999964               6999999999853

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.66  E-value=0.0012  Score=66.33  Aligned_cols=42  Identities=29%  Similarity=0.627  Sum_probs=33.6

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCce---------------eeCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGK---------------VMCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~Gk---------------V~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                 ...+|+.|+|+|.               ..|+.|.|+|++..
T Consensus       150 ~~~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~  206 (421)
T PTZ00037        150 DVICANCEGHGGPKD-----------------AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP  206 (421)
T ss_pred             cccccccCCCCCCCC-----------------CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence            368999999996321                 2468999999994               27999999999864

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.62  E-value=0.0013  Score=64.78  Aligned_cols=43  Identities=30%  Similarity=0.786  Sum_probs=34.8

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+               +|+.|.|+|++..
T Consensus       155 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  212 (386)
T PRK14277        155 FEKCDVCKGSGAKPG----------------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT  212 (386)
T ss_pred             eccCCCCCCCCcCCC----------------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc
Confidence            468999999998642                135789999999864               6999999999863

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.62  E-value=0.0011  Score=65.20  Aligned_cols=39  Identities=33%  Similarity=0.947  Sum_probs=31.8

Q ss_pred             ccccccccccCccc---------------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       230 ~~k~C~~C~GtG~v---------------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ....|+.|+|+|.+               +|+.|+|.|.+.                   ...|+.|+|+|.+
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  223 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIV  223 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEE
Confidence            35689999999863               699999999874                   3579999999965

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.60  E-value=0.0014  Score=64.40  Aligned_cols=39  Identities=28%  Similarity=0.798  Sum_probs=32.3

Q ss_pred             ccccccccccCcc-----------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          230 EKKRCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       230 ~~k~C~~C~GtG~-----------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ....|..|+|+|.           .+|+.|+|+|.+.                   ...|+.|.|.|.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  204 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------------KTPCQACKGKTYI  204 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------------cccCccCCCcceE
Confidence            3468999999996           3699999999874                   3569999999965

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0018  Score=63.89  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             ccCCCCCCCceeeeecCCCCCC--------CCCCCCCC------CceeeCCCCCcCceeeCCCCCCceEEec
Q 021514          243 LACARCSSSGVCLSVDPISTSN--------ASNGPLRV------PTTQRCPNCSGAGKVMCPSCLCTGMMMA  300 (311)
Q Consensus       243 v~C~~C~GSG~i~~~~~~s~g~--------g~c~~~~~------q~~~~CptC~G~GkV~CptC~GtG~v~~  300 (311)
                      ..|..|.|+|..++....+.+.        ..|..|.+      .....|..|+|+|+..|++|+|.|.+..
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C  259 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC  259 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence            4566666666666654443331        12222222      1234566666666666666666666654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.57  E-value=0.0016  Score=63.82  Aligned_cols=42  Identities=33%  Similarity=0.888  Sum_probs=34.4

Q ss_pred             ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ..|..|+|+|.....                ...+|+.|.|.|.+           .|+.|.|+|++..
T Consensus       145 ~~C~~C~G~G~~~~~----------------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~  197 (366)
T PRK14294        145 ETCEECHGSGCEPGT----------------SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV  197 (366)
T ss_pred             ccCCCCCCccccCCC----------------CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC
Confidence            689999999986421                25789999999964           7999999999853

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.54  E-value=0.0023  Score=54.05  Aligned_cols=37  Identities=35%  Similarity=0.783  Sum_probs=28.8

Q ss_pred             ccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee------------eCCCCCCceEEe
Q 021514          241 GYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV------------MCPSCLCTGMMM  299 (311)
Q Consensus       241 G~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV------------~CptC~GtG~v~  299 (311)
                      ....|..|+|+|.                      .+|+.|+|+|.+            .|++|.|+|+..
T Consensus        40 ~~v~C~~C~GsG~----------------------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~   88 (111)
T PLN03165         40 NTQPCFPCSGTGA----------------------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT   88 (111)
T ss_pred             cCCCCCCCCCCCC----------------------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceee
Confidence            4578999999885                      257777777653            799999999865

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.46  E-value=0.0017  Score=59.08  Aligned_cols=26  Identities=35%  Similarity=0.942  Sum_probs=12.2

Q ss_pred             eeCCCCCcCcee-----eCCCCCCceEEece
Q 021514          276 QRCPNCSGAGKV-----MCPSCLCTGMMMAS  301 (311)
Q Consensus       276 ~~CptC~G~GkV-----~CptC~GtG~v~~s  301 (311)
                      .+|+.|+|+|++     +|+.|+|+|++..+
T Consensus       100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             CcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            344444444443     25555555555433

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0019  Score=63.20  Aligned_cols=38  Identities=37%  Similarity=0.980  Sum_probs=31.5

Q ss_pred             cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|+.|+|+|.               .+|+.|+|.|.+.                   ...|+.|.|+|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  217 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV  217 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence            468999999994               4799999999874                   4679999999975

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.41  E-value=0.002  Score=63.88  Aligned_cols=75  Identities=24%  Similarity=0.551  Sum_probs=48.4

Q ss_pred             hccCcccccccCCceeeeeeccchhhhhhhhhhhcceeec-----cccccccccccCcc---------------ccCCCC
Q 021514          189 RNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ-----QEKKRCKYCHGSGY---------------LACARC  248 (311)
Q Consensus       189 ~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~-----q~~k~C~~C~GtG~---------------v~C~~C  248 (311)
                      .++++.+.|++.|-    |.|...-+-. ...+.|..+..     .....|..|+|+|.               .+|..|
T Consensus       137 ~di~~~l~vtLee~----~~G~~~~i~~-~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  211 (397)
T PRK14281        137 TDLKIRLKLTLEEI----AKGVEKTLKI-KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTC  211 (397)
T ss_pred             CCEEEEEEeEHHHH----hCCeEEEEEE-EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCC
Confidence            35566666766665    6776532111 11112222222     24578999999995               369999


Q ss_pred             CCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          249 SSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       249 ~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      +|+|.+.                   ...|+.|.|.|.+
T Consensus       212 ~G~G~~~-------------------~~~C~~C~G~g~v  231 (397)
T PRK14281        212 GGEGRVV-------------------KDRCPACYGEGIK  231 (397)
T ss_pred             cceeeee-------------------CCCCCCCCCCccE
Confidence            9999885                   3569999999975

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.40  E-value=0.002  Score=62.52  Aligned_cols=38  Identities=34%  Similarity=0.947  Sum_probs=31.5

Q ss_pred             cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|..|+|+|.               .+|..|+|+|.+.                   ...|+.|.|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  212 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------------KEPCSTCKGKGRV  212 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------------CCCCCCCCCCcEe
Confidence            568999999984               3799999999875                   2469999999975

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.35  E-value=0.0026  Score=62.64  Aligned_cols=41  Identities=32%  Similarity=0.973  Sum_probs=33.4

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEE
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMM  298 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v  298 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        156 YVPCEACGGTGYDPG----------------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             eccCCCCccccCCCC----------------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence            468999999998542                135789999999975           79999999964

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.26  E-value=0.0035  Score=61.60  Aligned_cols=43  Identities=35%  Similarity=0.821  Sum_probs=34.7

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|....                ....+|+.|.|.|.+               +|+.|.|+|++..
T Consensus       143 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  200 (374)
T PRK14293        143 LETCETCRGSGAKPG----------------TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE  200 (374)
T ss_pred             cccCCCCCCcCCCCC----------------CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec
Confidence            468999999997542                135789999999974               6999999999853

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.05  E-value=0.0038  Score=61.42  Aligned_cols=39  Identities=38%  Similarity=0.946  Sum_probs=30.5

Q ss_pred             ccccccccccCccc---------------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       230 ~~k~C~~C~GtG~v---------------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ....|..|+|+|.+               +|..|+|+|...                   ..+|..|.|+|.+
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  215 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------------EKPCSNCHGKGVV  215 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------------CCCCCCCCCceee
Confidence            34679999998863               599999999874                   3569999998865

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.05  E-value=0.0039  Score=61.01  Aligned_cols=38  Identities=34%  Similarity=0.934  Sum_probs=31.1

Q ss_pred             cccccccccCccc---------------cCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~v---------------~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|..|+|+|.+               +|..|+|.|...                   ...|+.|.|+|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence            5689999999863               699999999874                   3679999999865

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.84  E-value=0.0096  Score=52.12  Aligned_cols=50  Identities=26%  Similarity=0.679  Sum_probs=38.2

Q ss_pred             ccccccccccCccccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCceeeC
Q 021514          230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVMC  289 (311)
Q Consensus       230 ~~k~C~~C~GtG~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV~C  289 (311)
                      ....|..|.|.+.++|..|+|+=.+...+..          ......+|+.|+=.|-++|
T Consensus        98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----------~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          98 GGGVCEGCGGARFVPCSECNGSCKVFAENAT----------AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCCCcCeEECCCCCCcceEEeccCc----------ccccEEECCCCCccccccC
Confidence            3457999999999999999999988754311          1124678888888887776

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.45  E-value=0.0092  Score=54.45  Aligned_cols=26  Identities=27%  Similarity=0.848  Sum_probs=17.9

Q ss_pred             cccccccccCccc-----cCCCCCCCceeee
Q 021514          231 KKRCKYCHGSGYL-----ACARCSSSGVCLS  256 (311)
Q Consensus       231 ~k~C~~C~GtG~v-----~C~~C~GSG~i~~  256 (311)
                      ...|+.|+|+|..     +|+.|+|+|.+..
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~  129 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP  129 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence            4577777777752     4777777777654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.008  Score=57.69  Aligned_cols=66  Identities=26%  Similarity=0.556  Sum_probs=48.4

Q ss_pred             eeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCc
Q 021514          225 NVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCT  295 (311)
Q Consensus       225 nvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~Gt  295 (311)
                      .........|..|.|.|.      ..|..|+|+|..........           ...+|..|.|.|.+   .|..|.|.
T Consensus       158 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-----------~~~~~~~c~~~~~~~~~~c~~~~g~  226 (288)
T KOG0715|consen  158 RISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPF-----------ILYTCSYCLGRGLVLRDNCQACSGA  226 (288)
T ss_pred             ceEEEeecccccccCcCcccccccccchhhhCcccccccccCCc-----------ceeecccccccceeccchHHHhhcc
Confidence            344556679999999985      58999999996654222110           11289999999998   69999999


Q ss_pred             eEEece
Q 021514          296 GMMMAS  301 (311)
Q Consensus       296 G~v~~s  301 (311)
                      |++...
T Consensus       227 ~~v~~~  232 (288)
T KOG0715|consen  227 GQVRRA  232 (288)
T ss_pred             hhhhhh
Confidence            965433

>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional

Probab=92.20  E-value=0.2  Score=49.10  Aligned_cols=38  Identities=26%  Similarity=0.657  Sum_probs=31.4

Q ss_pred             CceeeCCCCCcCcee---------------eCCCCCCceEEeceeeCCCcCCC
Q 021514          273 PTTQRCPNCSGAGKV---------------MCPSCLCTGMMMASEHDPRIDPF  310 (311)
Q Consensus       273 q~~~~CptC~G~GkV---------------~CptC~GtG~v~~sEhD~riDPf  310 (311)
                      ..+..|+.|+-.+++               .|.+|++-=++...+.|+.+||+
T Consensus       224 ~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~~p~  276 (309)
T PRK03564        224 VVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKILYQEKDPKVEAV  276 (309)
T ss_pred             ccCccCCCCCCCCceeeeeecCCCcceEeeecccccccceecccccCCCCCcc
Confidence            347789999866543               69999999888889999999997

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=85.19  E-value=0.81  Score=40.15  Aligned_cols=11  Identities=36%  Similarity=1.047  Sum_probs=6.4

Q ss_pred             eCCCCCCceEE
Q 021514          288 MCPSCLCTGMM  298 (311)
Q Consensus       288 ~CptC~GtG~v  298 (311)
                      +|+.|.-.|.+
T Consensus       135 rC~~Cnengl~  145 (147)
T cd03031         135 RCPECNENGLV  145 (147)
T ss_pred             ECCCCCccccc
Confidence            56666655544

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []

Probab=85.18  E-value=0.25  Score=46.87  Aligned_cols=37  Identities=30%  Similarity=0.693  Sum_probs=23.5

Q ss_pred             ceeeCCCCCcCcee----------------eCCCCCCceEEeceeeCCCcCCC
Q 021514          274 TTQRCPNCSGAGKV----------------MCPSCLCTGMMMASEHDPRIDPF  310 (311)
Q Consensus       274 ~~~~CptC~G~GkV----------------~CptC~GtG~v~~sEhD~riDPf  310 (311)
                      .+..|+.|+-....                .|.+|++.=++...+.|+.+||+
T Consensus       210 ~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd~~~~~~~~~~  262 (290)
T PF04216_consen  210 VRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVDREKDPELDPV  262 (290)
T ss_dssp             -TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEETTT-TT--HH
T ss_pred             cCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHhhhhCcccchh
Confidence            35689999866432                79999998888888999999884

The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=84.89  E-value=0.84  Score=49.43  Aligned_cols=48  Identities=27%  Similarity=0.652  Sum_probs=35.1

Q ss_pred             ccccccccccCcc-ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCc
Q 021514          230 EKKRCKYCHGSGY-LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCT  295 (311)
Q Consensus       230 ~~k~C~~C~GtG~-v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~Gt  295 (311)
                      ....|+.|   |+ ..|++|+..=....               ..+...|+.|+-...+  .||.|.++
T Consensus       434 ~~l~C~~C---g~v~~Cp~Cd~~lt~H~---------------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~  484 (730)
T COG1198         434 PLLLCRDC---GYIAECPNCDSPLTLHK---------------ATGQLRCHYCGYQEPIPQSCPECGSE  484 (730)
T ss_pred             ceeecccC---CCcccCCCCCcceEEec---------------CCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence            35689999   55 58999988744332               1257889999887665  79999887

>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE

Probab=84.69  E-value=0.75  Score=44.99  Aligned_cols=37  Identities=24%  Similarity=0.583  Sum_probs=29.6

Q ss_pred             ceeeCCCCCcCcee-----------------eCCCCCCceEEeceeeCCCcCCC
Q 021514          274 TTQRCPNCSGAGKV-----------------MCPSCLCTGMMMASEHDPRIDPF  310 (311)
Q Consensus       274 ~~~~CptC~G~GkV-----------------~CptC~GtG~v~~sEhD~riDPf  310 (311)
                      .+..|+.|+-..++                 .|.+|++-=++...+.|+.+||+
T Consensus       223 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~~~~  276 (305)
T TIGR01562       223 VRVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLKILYQEKDPHADAV  276 (305)
T ss_pred             cCccCCCCCCCCceeeEeecCCCCCcceEEeeccccccchhhhccccCCccCch
Confidence            46778888754321                 69999998888888999999997

The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=83.93  E-value=0.56  Score=44.61  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=20.6

Q ss_pred             eeeCCCCCcCceeeCCCCCCceEEec
Q 021514          275 TQRCPNCSGAGKVMCPSCLCTGMMMA  300 (311)
Q Consensus       275 ~~~CptC~G~GkV~CptC~GtG~v~~  300 (311)
                      ..+|..-.|++.++||+|+|+|++..
T Consensus        27 ~~py~e~~g~~~vtCPTCqGtGrIP~   52 (238)
T PF07092_consen   27 SFPYVEFTGRDSVTCPTCQGTGRIPR   52 (238)
T ss_pred             cCccccccCCCCCcCCCCcCCccCCc
Confidence            45677778888889999999998854

The function of this family is unknown.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=80.82  E-value=0.78  Score=45.57  Aligned_cols=73  Identities=33%  Similarity=0.644  Sum_probs=44.9

Q ss_pred             ccchhhhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc----------------ccCC
Q 021514          183 SYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY----------------LACA  246 (311)
Q Consensus       183 ~y~df~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~----------------v~C~  246 (311)
                      +++|+....+.|+.|+.-  ...+-+-|.-+             +......|..|.|+|.                ..|.
T Consensus       110 ~Le~~y~G~s~kl~l~~~--~iCs~C~GsGg-------------ksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~  174 (337)
T KOG0712|consen  110 TLEELYMGKSKKLFLSRN--FICSKCSGSGG-------------KSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD  174 (337)
T ss_pred             EHHHhhcCCccceecccC--ccCCcCCCCCC-------------CCCCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence            477777777777776633  22222222211             1112337999999985                3677


Q ss_pred             CCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          247 RCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       247 ~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      .|+|+|....                 ...+|+.|.|++.+
T Consensus       175 ~C~G~G~~~~-----------------~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  175 SCNGSGETIS-----------------LKDRCKTCSGAKVV  198 (337)
T ss_pred             cCCCcccccc-----------------ccccCcccccchhh
Confidence            7777776521                 25699999999975

>TIGR00595 priA primosomal protein N'

Probab=80.53  E-value=1.6  Score=44.83  Aligned_cols=47  Identities=30%  Similarity=0.723  Sum_probs=31.5

Q ss_pred             cccccccccCcc-ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee--eCCCCCCc
Q 021514          231 KKRCKYCHGSGY-LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV--MCPSCLCT  295 (311)
Q Consensus       231 ~k~C~~C~GtG~-v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV--~CptC~Gt  295 (311)
                      ...|..|   |+ ..|++|++.=.....               .....|+.|+-.-.+  .||.|.+.
T Consensus       213 ~~~C~~C---g~~~~C~~C~~~l~~h~~---------------~~~l~Ch~Cg~~~~~~~~Cp~C~s~  262 (505)
T TIGR00595       213 NLLCRSC---GYILCCPNCDVSLTYHKK---------------EGKLRCHYCGYQEPIPKTCPQCGSE  262 (505)
T ss_pred             eeEhhhC---cCccCCCCCCCceEEecC---------------CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence            4578888   44 689999876443321               235788888866554  68888765

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-04

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 17/69 (24%)

Query: 234 CKYCHGSGYLA-----CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM 288
           CK C G G        C  C+  G+      +       GP+       C  C G G ++
Sbjct: 41  CKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM-------GPMIQRFQTECDVCHGTGDII 93

Query: 289 -----CPSC 292
                C SC
Sbjct: 94  DPKDRCKSC 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.3
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.1
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.05
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.93
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.74
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.28
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.09
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.9
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.47
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.41
2fiy_A	309	Protein FDHE homolog; FDHE protein, structural gen	82.64

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.5e-12  Score=103.00  Aligned_cols=84  Identities=21%  Similarity=0.425  Sum_probs=67.6

Q ss_pred             ccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCC
Q 021514          190 NMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTS  263 (311)
Q Consensus       190 s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g  263 (311)
                      +.++++.|++.|.    |+|..            ..+++++...|..|+|+|.      .+|+.|+|+|++...+.    
T Consensus         3 ~~~~~l~vslee~----~~G~~------------~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G----   62 (104)
T 2ctt_A            3 SGSSGMELTFNQA----AKGVN------------KEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTG----   62 (104)
T ss_dssp             CCCCCCCCCCSSC----CSSSC------------TTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEET----
T ss_pred             ceEEEEEEEHHHH----cCCCE------------EEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeC----
Confidence            5677888888877    77876            3355677889999999984      68999999999876431    


Q ss_pred             CCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEec
Q 021514          264 NASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMMA  300 (311)
Q Consensus       264 ~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~~  300 (311)
                             .++.+.+|+.|+|+|++   +|+.|+|.|++..
T Consensus        63 -------~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~   95 (104)
T 2ctt_A           63 -------PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQ   95 (104)
T ss_dssp             -------TEEEEEECSSSSSSSEECSSCCSSSSSCSEECC
T ss_pred             -------CEEEEEECCcCCCcceECCCcCCCCCCeeEEEE
Confidence                   13457899999999998   8999999998853

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.10  E-value=1.6e-11  Score=112.19  Aligned_cols=99  Identities=19%  Similarity=0.486  Sum_probs=73.7

Q ss_pred             hhccCcccccccCCceeeeeeccchhhhhhhhhhhcceeeccccccccccccCcc-----ccCCCCCCCceeeeecCCCC
Q 021514          188 IRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPIST  262 (311)
Q Consensus       188 ~~s~~lp~qLs~vD~IvAsF~GGaVGvisal~vvE~nnvk~q~~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~  262 (311)
                      ..++++++.|++.|-    |+|..            ..++..+...|..|+|+|.     .+|+.|+|+|++...++.+ 
T Consensus        11 g~d~~~~l~vslee~----~~G~~------------k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g-   73 (248)
T 1nlt_A           11 GKDIKHEISASLEEL----YKGRT------------AKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMG-   73 (248)
T ss_dssp             CCCEEEEEEECTTHH----HHCEE------------EEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESS-
T ss_pred             CCCEEEEEEecHHHh----cCCce------------EEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecC-
Confidence            345666677776665    66665            4566778889999999995     6899999999987655442 


Q ss_pred             CCCCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEece-eeCCCcCC
Q 021514          263 SNASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMMAS-EHDPRIDP  309 (311)
Q Consensus       263 g~g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~~s-EhD~riDP  309 (311)
                            ++.++.+.+|+.|+|+|++     +|+.|+|.|.+... ..++.|.|
T Consensus        74 ------~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~  120 (248)
T 1nlt_A           74 ------PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEP  120 (248)
T ss_dssp             ------SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECT
T ss_pred             ------ceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECC
Confidence                  1234568899999999964     79999999998644 45555544

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.05  E-value=1.2e-10  Score=88.12  Aligned_cols=65  Identities=29%  Similarity=0.682  Sum_probs=53.3

Q ss_pred             eeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCc
Q 021514          225 NVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCT  295 (311)
Q Consensus       225 nvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~Gt  295 (311)
                      .+++.+...|+.|+|+|.      .+|+.|+|+|.+...+.           .++...+|+.|+|+|++   +|+.|+|.
T Consensus         5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g-----------~~~~~~~C~~C~G~G~~~~~~C~~C~G~   73 (79)
T 1exk_A            5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQG-----------FFAVQQTCPHCQGRGTLIKDPCNKCHGH   73 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEET-----------TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred             EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcC-----------CCEEeeECcCCCCccEECCCcCCCCCCe
Confidence            455678889999999995      58999999999875331           12356799999999998   89999999


Q ss_pred             eEEec
Q 021514          296 GMMMA  300 (311)
Q Consensus       296 G~v~~  300 (311)
                      |++..
T Consensus        74 G~~~~   78 (79)
T 1exk_A           74 GRVER   78 (79)
T ss_dssp             SEEEC
T ss_pred             EEEee
Confidence            99853

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.93  E-value=5.3e-06  Score=62.47  Aligned_cols=42  Identities=36%  Similarity=0.892  Sum_probs=34.8

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEe
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMM  299 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~  299 (311)
                      ...|+.|+|+|....                ....+|+.|+|+|++           +|+.|.|+|.+.
T Consensus        11 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           11 LEECDVCHGSGAKPG----------------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EEECGGGTTTSBCSS----------------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             ceECCCCcccccCCC----------------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            468999999997531                135799999999965           799999999985

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.74  E-value=2e-05  Score=62.68  Aligned_cols=43  Identities=28%  Similarity=0.627  Sum_probs=35.1

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      ...|..|+|+|...                +....+|+.|+|+|++           .|+.|.|+|++..
T Consensus        28 ~~~C~~C~G~G~~~----------------g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~   81 (104)
T 2ctt_A           28 MDTCERCNGKGNEP----------------GTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII   81 (104)
T ss_dssp             CEECSSSSSSSSCT----------------TCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS
T ss_pred             eeECCCCcCCccCC----------------CCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC
Confidence            47899999999743                1236899999999964           7999999999863

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.28  E-value=0.0001  Score=53.50  Aligned_cols=28  Identities=39%  Similarity=1.122  Sum_probs=24.2

Q ss_pred             ceeeCCCCCcCcee---eCCCCCCceEEece
Q 021514          274 TTQRCPNCSGAGKV---MCPSCLCTGMMMAS  301 (311)
Q Consensus       274 ~~~~CptC~G~GkV---~CptC~GtG~v~~s  301 (311)
                      .+.+|++|+|+|++   +|+.|+|+|.+...
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            47899999999996   89999999988654

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.09  E-value=0.00019  Score=65.30  Aligned_cols=40  Identities=30%  Similarity=0.815  Sum_probs=32.5

Q ss_pred             cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|+.|+|+|.               .+|+.|+|+|.+..                 ...+|+.|+|.|.+
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------------PKDRCKSCNGKKVE  108 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------------TTSBCSSSTTSCEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------------cCCCCcccCCCceE
Confidence            368999999985               37999999998752                 25789999999975

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.90  E-value=0.00063  Score=49.29  Aligned_cols=26  Identities=35%  Similarity=1.039  Sum_probs=19.3

Q ss_pred             eeeCCCCCcCcee---eCCCCCCceEEec
Q 021514          275 TQRCPNCSGAGKV---MCPSCLCTGMMMA  300 (311)
Q Consensus       275 ~~~CptC~G~GkV---~CptC~GtG~v~~  300 (311)
                      ..+|+.|+|+|++   +|+.|+|+|.+..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            5677777777765   7888888887754

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.47  E-value=0.0013  Score=47.55  Aligned_cols=26  Identities=38%  Similarity=0.938  Sum_probs=18.5

Q ss_pred             cccccccccCcc---ccCCCCCCCceeee
Q 021514          231 KKRCKYCHGSGY---LACARCSSSGVCLS  256 (311)
Q Consensus       231 ~k~C~~C~GtG~---v~C~~C~GSG~i~~  256 (311)
                      ...|+.|+|+|.   .+|+.|+|+|.+..
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            347888887776   46777777777654

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.41  E-value=0.0015  Score=47.23  Aligned_cols=25  Identities=36%  Similarity=0.816  Sum_probs=15.3

Q ss_pred             ccccccccCcc---ccCCCCCCCceeee
Q 021514          232 KRCKYCHGSGY---LACARCSSSGVCLS  256 (311)
Q Consensus       232 k~C~~C~GtG~---v~C~~C~GSG~i~~  256 (311)
                      ..|+.|+|+|.   .+|+.|+|+|.+..
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEEE
Confidence            36666666665   35666666666553

>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1

Probab=82.64  E-value=0.37  Score=45.54  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eCCCCCCceEEeceeeCCCcCCC
Q 021514          288 MCPSCLCTGMMMASEHDPRIDPF  310 (311)
Q Consensus       288 ~CptC~GtG~v~~sEhD~riDPf  310 (311)
                      .|.+|++.=++...+.|+.+||+
T Consensus       255 ~C~~C~~YlK~~~~~~d~~~dp~  277 (309)
T 2fiy_A          255 TCPSCQGYLKQFYLEFDRHADAL  277 (309)
T ss_dssp             EETTTTEEEEEEETTTCTTCCHH
T ss_pred             EcccccchHhhhhhccCCCCCcc
Confidence            79999998888888999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	5e-04
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	0.001
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	0.003

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 234 CKYCHGSGYLA-----CARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM 288
           CK C G G        C  C+  G+      +       GP+       C  C G G ++
Sbjct: 5   CKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM-------GPMIQRFQTECDVCHGTGDII 57

Query: 289 CPSCLCT 295
            P   C 
Sbjct: 58  DPKDRCK 64

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV 287
            K+C  C+G G     R     +          + + G   +    RC +C+G    
Sbjct: 18  VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGT-GD-IIDPKDRCKSCNGKKVE 72

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKVM-- 288
            + C  CHGSG     +  +   C     +               Q CP+C G G ++  
Sbjct: 11  LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFF-----AVQQTCPHCQGRGTLIKD 65

Query: 289 -CPSC 292
            C  C
Sbjct: 66  PCNKC 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.15
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.07
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.77
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.72
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.9
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	91.7
d2fiya1	290	FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId	85.65

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=9.9e-12  Score=93.98  Aligned_cols=66  Identities=29%  Similarity=0.661  Sum_probs=54.4

Q ss_pred             ceeeccccccccccccCcc------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCC
Q 021514          224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLC  294 (311)
Q Consensus       224 nnvk~q~~k~C~~C~GtG~------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~G  294 (311)
                      ..+++++...|+.|+|+|.      ..|+.|+|+|++....           +.++..++|+.|+|+|++   +|+.|.|
T Consensus         4 k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~-----------g~~~~~~~C~~C~G~G~~i~~~C~~C~G   72 (79)
T d1exka_           4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ-----------GFFAVQQTCPHCQGRGTLIKDPCNKCHG   72 (79)
T ss_dssp             TSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE-----------TTEEEEEECTTTTTSSEECSSBCGGGTT
T ss_pred             EEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEec-----------ccceeeEECcccCcceeECCCCCCCCCC
Confidence            3466778899999999985      5799999999886532           223467899999999998   8999999


Q ss_pred             ceEEec
Q 021514          295 TGMMMA  300 (311)
Q Consensus       295 tG~v~~  300 (311)
                      +|++..
T Consensus        73 ~G~v~k   78 (79)
T d1exka_          73 HGRVER   78 (79)
T ss_dssp             SSEEEC
T ss_pred             ceEeec
Confidence            999865

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.5e-11  Score=90.93  Aligned_cols=62  Identities=26%  Similarity=0.636  Sum_probs=51.3

Q ss_pred             cccccccccCcc-----ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----eCCCCCCceEEe
Q 021514          231 KKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----MCPSCLCTGMMM  299 (311)
Q Consensus       231 ~k~C~~C~GtG~-----v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----~CptC~GtG~v~  299 (311)
                      .+.|+.|+|+|.     .+|+.|+|+|++....++.       ++..+...+|+.|.|+|++     +|+.|+|+|++.
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMG-------PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESS-------SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEec-------CcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            568999999995     5799999999998766553       2344567899999999986     699999999774

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6.4e-06  Score=61.35  Aligned_cols=43  Identities=35%  Similarity=0.868  Sum_probs=35.3

Q ss_pred             cccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee-----------eCCCCCCceEEec
Q 021514          242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV-----------MCPSCLCTGMMMA  300 (311)
Q Consensus       242 ~v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV-----------~CptC~GtG~v~~  300 (311)
                      +..|+.|+|+|....                ....+|+.|+|+|++           +|+.|.|+|++..
T Consensus        11 ~~~C~~C~G~G~~~g----------------~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~   64 (79)
T d1exka_          11 LEECDVCHGSGAKPG----------------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK   64 (79)
T ss_dssp             EEECGGGTTTSBCSS----------------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred             eccCCCCcCcccCCC----------------ccceeCCCccceeEEEEecccceeeEECcccCcceeECC
Confidence            468999999996531                135789999999976           6999999999863

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=3.9e-06  Score=62.04  Aligned_cols=41  Identities=27%  Similarity=0.723  Sum_probs=33.2

Q ss_pred             ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---------------eCCCCCCceEEec
Q 021514          243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---------------MCPSCLCTGMMMA  300 (311)
Q Consensus       243 v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---------------~CptC~GtG~v~~  300 (311)
                      +.|+.|+|+|....                 ...+|+.|+|+|++               +|+.|.|+|.+..
T Consensus         3 v~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~   58 (74)
T d1nlta3           3 ILCKECEGRGGKKG-----------------AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID   58 (74)
T ss_dssp             EECTTTTTCSBSTT-----------------TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC
T ss_pred             cCCcCCcccccCCC-----------------CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC
Confidence            68999999996531                 13579999999964               6999999998754

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.90  E-value=3.8e-05  Score=57.07  Aligned_cols=60  Identities=18%  Similarity=0.319  Sum_probs=44.6

Q ss_pred             cccccccCcc---------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee---eCCCCCCceEEe
Q 021514          233 RCKYCHGSGY---------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV---MCPSCLCTGMMM  299 (311)
Q Consensus       233 ~C~~C~GtG~---------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV---~CptC~GtG~v~  299 (311)
                      .|..|||.|.         ..|..|+|+|.........       ......-..|+.|.|.|+.   .|..|++.|+..
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~-------h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKP-------HDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGG-------GTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeecccc-------ccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            6999999874         3699999999765432221       1233456889999998875   899999999764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=91.70  E-value=0.022  Score=41.52  Aligned_cols=38  Identities=24%  Similarity=0.598  Sum_probs=26.6

Q ss_pred             cccccccccCcc---------------ccCCCCCCCceeeeecCCCCCCCCCCCCCCCceeeCCCCCcCcee
Q 021514          231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGAGKV  287 (311)
Q Consensus       231 ~k~C~~C~GtG~---------------v~C~~C~GSG~i~~~~~~s~g~g~c~~~~~q~~~~CptC~G~GkV  287 (311)
                      ...|..|||+|.               ..|..|+|.|..                   ....|..|.|.|+.
T Consensus        31 ~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~-------------------~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          31 FAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG-------------------QKPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTT-------------------CCCCSTTTCSSCCC
T ss_pred             CCcCcccCCCceeEeeccccccCccccccCccccCCCCc-------------------CCCccccccCCCcc
Confidence            357999999874               356666665532                   24579999998874

>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}

class: Multi-domain proteins (alpha and beta)
fold: FdhE-like
superfamily: FdhE-like
family: FdhE-like
domain: FdhE homolog PA4809
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.65  E-value=0.16  Score=45.56  Aligned_cols=37  Identities=24%  Similarity=0.511  Sum_probs=29.2

Q ss_pred             ceeeCCCCCcCce-------------------e-eCCCCCCceEEeceeeCCCcCCC
Q 021514          274 TTQRCPNCSGAGK-------------------V-MCPSCLCTGMMMASEHDPRIDPF  310 (311)
Q Consensus       274 ~~~~CptC~G~Gk-------------------V-~CptC~GtG~v~~sEhD~riDPf  310 (311)
                      .+..|+.|+-+..                   + .|.+|++-=++...+.|+.+||+
T Consensus       203 ~R~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~r~e~C~~C~~Y~K~~~~~~~~~~~p~  259 (290)
T d2fiya1         203 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADAL  259 (290)
T ss_dssp             CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHH
T ss_pred             ccccCCCCCCCCCcceEEEecCCCcccccceEEEEcCCcCCeEEEeecccCCccCcc
Confidence            4678899875431                   1 59999998888888999999985