Citrus Sinensis ID: 021524

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MDDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIVTKPSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcEEEEccccccccEEcccccccccEEcccccccccccccEEccccccccccccccEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
mddghhengryKMEYYKGThaqwnmmpqhqmkepnnalVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAAnfssvggfqrggkrmhhptyqsgdvpealnsgdmhatdakpitiipsetkphqakrakenkivtkpsvsprkvkkVGEDLNKKVASDgkkiksewdsqdglnlvnfdettmpvpvctctgtphqcykwgnggwqsscctttlssyplpqmpnkrharvggrkmsGSVFTKLLSRLAaeghdlsvpldlknfwakhgtnryitik
Flexible Loop (DISEMBL)
mddghhengRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIAltekrealetrdQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPitiipsetkphqakrakenkivtkpsvsprkvkkvgedlnkkvasdgkkiksewdsqdglnLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLpqmpnkrharvggrkMSGSVFTKLLSRLAAEGHdlsvpldlknfwakhgtnryitik
Low Complexity Region (SEG)
MDDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSalaalqyreaaaNFSSVGGFQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIvtkpsvsprkvkkvGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK
Disordered region (IsUnstruct)
**************YYKGTHAQW*************ALVMNKKIMAILAERDAAIRE******************************************L*Y********************************************************************************************************GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYP*******************SVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYIT**
Disordered Region (DISOPRED)
********GRYKMEYYKGTHAQWN************************A*************************ALEERDKALAERDDALMARDSALAALQ**********************************************************************************************************LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQ***************GSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK
Disordered Region (DISEMBL)
MDDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET*********ENKIVTKPSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK
Disordered Region (DISPRO)
***********KMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGG*****************************************************************************************SQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERxxxxxxxxxxxxxxxxxxxxxxxxxxxRDDALMARDSALAALQYREAAANFSSVGGFQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIVTKPSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q8S8C6	296	Protein BASIC PENTACYSTEI	yes	no	0.929	0.976	0.594	1e-105
F4JUI3	283	Protein BASIC PENTACYSTEI	no	no	0.887	0.975	0.594	3e-97
Q5VSA8	331	Barley B recombinant-like	yes	no	0.977	0.918	0.494	3e-76
Q8L999	342	Protein BASIC PENTACYSTEI	no	no	0.951	0.865	0.504	9e-76
Q8GUC3	350	Protein Barley B recombin	N/A	no	0.334	0.297	0.576	3e-36
O82286	226	Protein BASIC PENTACYSTEI	no	no	0.437	0.601	0.470	4e-36
P0DH89	341	Barley B recombinant-like	no	no	0.334	0.304	0.567	6e-36
P0DH88	341	Barley B recombinant-like	no	no	0.334	0.304	0.567	6e-36
Q9SKD0	283	Protein BASIC PENTACYSTEI	no	no	0.556	0.611	0.412	3e-34
Q9C9X6	269	Protein BASIC PENTACYSTEI	no	no	0.334	0.386	0.567	2e-33

>sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/311 (59%), Positives = 236/311 (75%), Gaps = 22/311 (7%)

Query: 4   GHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALT 63
           G ++N R+K +Y+KG  + WNM+PQHQ+KE +NALVMNKKIM+ILAERDAA+ ERN A++
Sbjct: 5   GQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERNQAVS 64

Query: 64  EKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGGKRMH 123
            K+EA+  RD+AL++RDKAL+ERD AL+ RD+A AALQ+ E + NF+  GG         
Sbjct: 65  AKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSLNFALSGG--------- 115

Query: 124 HPTYQSGDVPEALNSGDMHATDAKPITIIPSETKPHQA--KRAKENKIVTKPSVSPRKVK 181
               +  D  +    G+ H  +  P++ IP E    +   KR KENK          KVK
Sbjct: 116 ----KCVDGDDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRKKENK------QGLSKVK 165

Query: 182 KVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGW 240
           KVGEDLN++V + GKK +++WDSQD GLNLV FDETTMPVP+C+CTG+  QCYKWGNGGW
Sbjct: 166 KVGEDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGW 225

Query: 241 QSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWA 300
           QSSCCTTTLS YPLPQMPNKRH+R+GGRKMSG+VF++LLSRL+AEG+DLS P+DLK++WA
Sbjct: 226 QSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWA 285

Query: 301 KHGTNRYITIK 311
           +HGTNRYITIK
Sbjct: 286 RHGTNRYITIK 296

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.
Arabidopsis thaliana (taxid: 3702)

>sp|F4JUI3|BPC5_ARATH Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thaliana GN=BPC5 PE=1 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/311 (59%), Positives = 228/311 (73%), Gaps = 35/311 (11%)

Query: 4   GHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALT 63
           G +ENGRYK +YYKGT +  N+MP+   KE +NALVMNKKI++ILAERDAA++ERN A+ 
Sbjct: 5   GQYENGRYKPDYYKGTQSV-NVMPK---KEQHNALVMNKKIISILAERDAAVKERNEAVA 60

Query: 64  EKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGGKRMH 123
             +EAL +RD+ALE+RDKAL+ERD+A+M  +SAL AL+YRE   N+  +   +RGG    
Sbjct: 61  ATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNLNYI-LSCAKRGGS--- 116

Query: 124 HPTYQSGDVPEALNSGDMHATDAKPITIIPSE---TKPHQAKRAKENKIVTKPSVSPRKV 180
                     +   + + H  +  PI+ IP E   T+P   KR KE+K          + 
Sbjct: 117 ----------QRFITEESHLPNPSPISTIPPEAANTRP--TKRKKESK----------QG 154

Query: 181 KKVGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGW 240
           KK+GEDLN+ VAS GKK + +WDS D L  V FDE TMPVP+CTCTGT  QCYKWGNGGW
Sbjct: 155 KKMGEDLNRPVASPGKKSRKDWDSNDVL--VTFDEMTMPVPMCTCTGTARQCYKWGNGGW 212

Query: 241 QSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWA 300
           QSSCCTTTLS YPLPQMPNKRH+RVGGRKMSGSVF++LLSRLA EGH+LS P+DLKN+WA
Sbjct: 213 QSSCCTTTLSEYPLPQMPNKRHSRVGGRKMSGSVFSRLLSRLAGEGHELSSPVDLKNYWA 272

Query: 301 KHGTNRYITIK 311
           +HGTNRYITIK
Sbjct: 273 RHGTNRYITIK 283

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VSA8|BBRD_ORYSJ Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 167/338 (49%), Positives = 207/338 (61%), Gaps = 34/338 (10%)

Query: 1   MDD-GHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MD+ GH ENGR + + YKG H QW MMPQ Q +   +   MN  ++A++ +RD AIRER+
Sbjct: 1   MDNLGHRENGRQRPDQYKGLHTQW-MMPQTQ-RHLKDHQSMN--LLALMNDRDNAIRERD 56

Query: 60  IALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVG-----G 114
            AL EK+ A+  RD A  +RD A+AER+ A++ RD+ALAAL+         + G     G
Sbjct: 57  HALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDNALAALELARTNGLNMNNGNGFPQG 116

Query: 115 FQRGGKRMHHPTYQSGDVPEALNSGD--------MHATDAKPITIIPSETKPHQAKRAKE 166
              G K +HH    S      L   D        MH ++A PI+  P      +AKR K+
Sbjct: 117 SLSGSKNIHHHDQLSHAQSSPLQLADSPYDHAREMHISEAYPISTAPGSAG--KAKRPKK 174

Query: 167 NKI----VTKPSVSPRKVKKVGEDLNKKVASDG--------KKIKSEWDSQD-GLNLVNF 213
           N      + +PS   RK KK   D  K V   G          +K+EW  Q+ GLN V F
Sbjct: 175 NSSQASPLKRPSGVLRKTKKPSGDW-KNVGMSGCGDDSAHASVMKNEWKDQNLGLNQVAF 233

Query: 214 DETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGS 273
           D++TMP P C+CTG   QCYKWGNGGWQSSCCT  +S YPLP MPNKRHAR+GGRKMSG 
Sbjct: 234 DDSTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMNISMYPLPVMPNKRHARMGGRKMSGG 293

Query: 274 VFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
            FTKLLSRLAAEGHDLS P+DLK+ WAKHGTNRYITI+
Sbjct: 294 AFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 331

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8L999|BPC6_ARATH Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1

 Score =  283 bits (725), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 180/357 (50%), Positives = 215/357 (60%), Gaps = 61/357 (17%)

Query: 1   MDDG-HHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MDDG H ENGR+K         QW M  Q  MK+          +M+I+AERDAAI+ERN
Sbjct: 1   MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQ----------VMSIIAERDAAIQERN 46

Query: 60  IALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYRE------AAANFSSVG 113
           +A++EK+ A+  RD A  +RD A+AER++A+M RDSAL ALQYRE       AAN S+  
Sbjct: 47  LAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACP 106

Query: 114 -------GFQRGGKRMHHPTYQSGDVPE----ALNSGDMHATDAKPITIIPSET----KP 158
                  G +       H  +Q   +P+    A  + +M   D  P +     T    KP
Sbjct: 107 PGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKP 166

Query: 159 HQAKRAKENKIVTKPSVSPR------KVKKVGED-LNK----KVASD------GKKI--- 198
            + KR    K  T+ + + R      KVKK  ED LNK    K   D       K I   
Sbjct: 167 KRGKRVNP-KATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSKHILIG 225

Query: 199 -KSEWDSQD--GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLP 255
            KS+W SQ+  GLN V +DETTMP PVC+CTG   QCYKWGNGGWQSSCCTTTLS YPLP
Sbjct: 226 SKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLP 285

Query: 256 QMPNKRHARVGGRKMSGSVFTKLLSRLAAEG-HDLSVPLDLKNFWAKHGTNRYITIK 311
            +PNKRHARVGGRKMSGS F KLLSRLAAEG HDLS P+DLK+ WAKHGTNRYITIK
Sbjct: 286 ALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUC3|BBR_HORVU Protein Barley B recombinant OS=Hordeum vulgare GN=BBR PE=1 SV=1

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 83/104 (79%)

Query: 208 LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
           +N ++FD + +P PVC+CTG P QCY+WG GGWQS+CCTT++S+YPLP    +R AR+ G
Sbjct: 247 INGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAG 306

Query: 268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
           RKMS   F K+L +LA EG++L+ P+DLK FWAKHGTN+++TI+
Sbjct: 307 RKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3.

Hordeum vulgare (taxid: 4513)

>sp|O82286|BPC7_ARATH Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1

 Score =  152 bits (383), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 19/155 (12%)

Query: 157 KPHQAKRAKENKIVTKPSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDET 216
           KP + KR+  NK    PS+   K +K   D+N                   +++ +FD +
Sbjct: 91  KPQRKKRSVSNKSKKTPSIPETKREKKNLDIN-------------------IDISSFDTS 131

Query: 217 TMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFT 276
            +P PVC+CTG    CYKWG GGWQSSCCT ++S+YPLP    +  AR+ GRKMS   + 
Sbjct: 132 GVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYV 191

Query: 277 KLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
           KLL+RLA EG+DLS PLDLKN WA+HGTN+++TIK
Sbjct: 192 KLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 226

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH89|BBRB_ORYSJ Barley B recombinant-like protein B OS=Oryza sativa subsp. japonica GN=Os10g0115200 PE=2 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 82/104 (78%)

Query: 208 LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
           +N ++ D + +P P+C+CTG P QCY+WG GGWQS+CCTTT+S+YPLP    +R AR+ G
Sbjct: 238 INGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAG 297

Query: 268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
           RKMS   F K+L +LA EG++L+ P+DLK FWAKHGTN+++TI+
Sbjct: 298 RKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DH88|BBRA_ORYSJ Barley B recombinant-like protein A OS=Oryza sativa subsp. japonica GN=Os10g0114500 PE=2 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 82/104 (78%)

Query: 208 LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
           +N ++ D + +P P+C+CTG P QCY+WG GGWQS+CCTTT+S+YPLP    +R AR+ G
Sbjct: 238 INGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAG 297

Query: 268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
           RKMS   F K+L +LA EG++L+ P+DLK FWAKHGTN+++TI+
Sbjct: 298 RKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKD0|BPC1_ARATH Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 9/182 (4%)

Query: 135 ALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIVTKPSVSP----RKVKKVGEDLNKK 190
            LNS         P    P+  +    K+ K    +  P+V      RK K+  +  N  
Sbjct: 106 VLNSSRFEENPIPP----PAPCEEQTGKKRKMRGSIATPTVPKAKKMRKPKEERDVTNNN 161

Query: 191 VASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTL 249
           V    +++K    S D  +N V+ D + +PVPVCTCTGTP QCY+WG GGWQS+CCTT +
Sbjct: 162 VQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNI 221

Query: 250 SSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYIT 309
           S YPLP    +R AR+ GRKMS   F K+L +L+ EG+     +DLK+ WA+HGTN+++T
Sbjct: 222 SVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNKFVT 281

Query: 310 IK 311
           I+
Sbjct: 282 IR 283

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9X6|BPC3_ARATH Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thaliana GN=BPC3 PE=1 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 79/104 (75%)

Query: 208 LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
           +N V+ D   +PVPVC+CTG P QCY+WG GGWQS+CCTT +S YPLP    +R AR+ G
Sbjct: 166 INGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPVNTKRRGARIAG 225

Query: 268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
           RKMS   F K+L +L+++G D S P+DLK+ WAKHGTN+++TI+
Sbjct: 226 RKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 269

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
255543891	314	conserved hypothetical protein [Ricinus	1.0	0.990	0.722	1e-131
118489613	322	unknown [Populus trichocarpa x Populus d	1.0	0.965	0.695	1e-128
319718081	320	GAGA-binding transcriptional activator [	1.0	0.971	0.693	1e-127
224077959	317	predicted protein [Populus trichocarpa]	0.996	0.977	0.695	1e-126
118483687	317	unknown [Populus trichocarpa]	0.996	0.977	0.692	1e-126
356513451	317	PREDICTED: uncharacterized protein LOC10	0.996	0.977	0.663	1e-118
356527692	317	PREDICTED: uncharacterized protein LOC10	0.996	0.977	0.660	1e-118
224105285	301	predicted protein [Populus trichocarpa]	0.938	0.970	0.662	1e-118
225427790	307	PREDICTED: protein BASIC PENTACYSTEINE4	0.974	0.986	0.679	1e-117
356527696	311	PREDICTED: uncharacterized protein LOC10	0.977	0.977	0.650	1e-114

>gi|255543891|ref|XP_002513008.1| conserved hypothetical protein [Ricinus communis] gi|223548019|gb|EEF49511.1| conserved hypothetical protein [Ricinus communis]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/314 (72%), Positives = 265/314 (84%), Gaps = 3/314 (0%)

Query: 1   MDD-GHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MD+ G H NGRYK++YYK  ++ W+M   H +KEP+NALVMNKKIMAILAERDAAI+ERN
Sbjct: 1   MDESGQHHNGRYKIDYYKAANSPWSMGSPHPIKEPSNALVMNKKIMAILAERDAAIQERN 60

Query: 60  IALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGG 119
           +AL EK+EAL  RD+AL++R+KALAERD ALM RD+ALAA+QYRE A NF    G QRG 
Sbjct: 61  MALAEKKEALVARDEALQQREKALAERDKALMERDNALAAIQYRENAMNFPFGNGNQRGS 120

Query: 120 KRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET-KPHQAKRAKENKIVT-KPSVSP 177
           KR+ HP Y S +V EAL+ G+MH TDA PIT + +E+ KP Q KR+KENK V+ K + S 
Sbjct: 121 KRIPHPVYNSNEVAEALDGGEMHITDAFPITTVAAESGKPRQTKRSKENKSVSMKATKSA 180

Query: 178 RKVKKVGEDLNKKVASDGKKIKSEWDSQDGLNLVNFDETTMPVPVCTCTGTPHQCYKWGN 237
           +K  KVGEDLN++  SDGKK K EWD QDGLNLVNFD++TMPVPVC+CTG PHQCYKWGN
Sbjct: 181 KKGNKVGEDLNRQGPSDGKKFKVEWDGQDGLNLVNFDDSTMPVPVCSCTGVPHQCYKWGN 240

Query: 238 GGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKN 297
           GGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLA+EGHDLS+PLDLK+
Sbjct: 241 GGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLASEGHDLSLPLDLKD 300

Query: 298 FWAKHGTNRYITIK 311
           +WA+HGTNRYITIK
Sbjct: 301 YWARHGTNRYITIK 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489613|gb|ABK96608.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/322 (69%), Positives = 262/322 (81%), Gaps = 11/322 (3%)

Query: 1   MDDG-HHENGRYKMEYYKGTHAQ-------WNMMPQHQMKEPNNALVMNKKIMAILAERD 52
           MDDG  H+NGRYKM+YYK  H         WNMM QHQ+KE  NAL MNKKIM IL ERD
Sbjct: 1   MDDGGQHQNGRYKMDYYKAAHPHPHPHPPAWNMMSQHQVKEQTNALAMNKKIMTILIERD 60

Query: 53  AAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSV 112
            AIRERN+AL EK+EAL  RD+A+++R+KAL ERD ALM RD+ALAA+QYRE A N+   
Sbjct: 61  DAIRERNLALAEKKEALAARDEAIQQREKALVERDKALMERDNALAAIQYRENAMNYPLS 120

Query: 113 GGFQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET-KPHQAKRAKENKIV- 170
           GG QRG KR+ HP Y S  + EAL++G+MH TDA PI+ + +ET K  Q KR+KENK V 
Sbjct: 121 GGSQRGSKRIPHPVYHSNGMSEALDTGEMHITDALPISSVTAETGKARQTKRSKENKAVG 180

Query: 171 TKPSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTP 229
            K + SPRK  +VGEDLNK+ ASDGKKIK EWDSQD GLNL+NFDETTMP PVC+CTG P
Sbjct: 181 LKAAKSPRKGSRVGEDLNKQGASDGKKIKVEWDSQDVGLNLINFDETTMPAPVCSCTGVP 240

Query: 230 HQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDL 289
            QCYKWG+GGWQS+CCTTT+SSYPLPQMPNKRHAR+GGRKMSG+VFT+LLSRLAAEGHDL
Sbjct: 241 RQCYKWGSGGWQSACCTTTMSSYPLPQMPNKRHARIGGRKMSGNVFTRLLSRLAAEGHDL 300

Query: 290 SVPLDLKNFWAKHGTNRYITIK 311
           ++PLDLK++WA+HGTNRYITIK
Sbjct: 301 AIPLDLKDYWARHGTNRYITIK 322

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319718081|gb|ADV59343.1| GAGA-binding transcriptional activator [Populus trichocarpa] gi|319718083|gb|ADV59344.1| GAGA-binding transcriptional activator [Populus trichocarpa]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/320 (69%), Positives = 262/320 (81%), Gaps = 9/320 (2%)

Query: 1   MDDG-HHENGRYKMEYYKGTHAQ-----WNMMPQHQMKEPNNALVMNKKIMAILAERDAA 54
           MDDG  H+NGR+KM+YYK  H       WNMM QHQ+KE  NAL MNKKIM IL ERD A
Sbjct: 1   MDDGGQHQNGRFKMDYYKAAHPHPHPPAWNMMSQHQVKEQTNALAMNKKIMTILIERDDA 60

Query: 55  IRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGG 114
           IRERN+AL EK+EAL  RD+A+++R+KAL ERD ALM RD+ALAA+QYRE A ++   GG
Sbjct: 61  IRERNLALAEKKEALAARDEAIQQREKALVERDKALMERDNALAAIQYRENAMSYPLSGG 120

Query: 115 FQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET-KPHQAKRAKENKIV-TK 172
            QRG KR+ HP Y S  + EAL++G+MH TDA PI+ + +ET K  Q KR+KENK V  K
Sbjct: 121 SQRGSKRIPHPVYHSNGMSEALDTGEMHITDALPISSVTAETGKARQTKRSKENKAVGLK 180

Query: 173 PSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQ 231
            + SPRK  +VGEDLNK+ ASDGKKIK EWDSQD GLNL+NFDETTMP PVC+CTG P Q
Sbjct: 181 AAKSPRKGSRVGEDLNKQGASDGKKIKVEWDSQDVGLNLINFDETTMPAPVCSCTGVPRQ 240

Query: 232 CYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSV 291
           CYKWG+GGWQS+CCTTT+SSYPLPQMPNKRHAR+GGRKMSG+VFT+LLSRLAAEGHDL++
Sbjct: 241 CYKWGSGGWQSACCTTTMSSYPLPQMPNKRHARIGGRKMSGNVFTRLLSRLAAEGHDLAI 300

Query: 292 PLDLKNFWAKHGTNRYITIK 311
           PLDLK++WA+HGTNRYITIK
Sbjct: 301 PLDLKDYWARHGTNRYITIK 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077959|ref|XP_002305467.1| predicted protein [Populus trichocarpa] gi|157400520|gb|ABV53914.1| GAGA-motif binding transcriptional activator [Populus trichocarpa] gi|222848431|gb|EEE85978.1| predicted protein [Populus trichocarpa]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/315 (69%), Positives = 259/315 (82%), Gaps = 5/315 (1%)

Query: 2   DDGHHENGRYKMEYYKGTHAQ--WNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           D G H+NGRYK++YYK  H    WNMMP++Q+KE  NALVMNKKIM IL ERD AIRERN
Sbjct: 3   DGGQHQNGRYKIDYYKTAHPHPPWNMMPRNQVKEQTNALVMNKKIMTILIERDDAIRERN 62

Query: 60  IALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGG 119
           +A  EK+EAL  RD+A+++R+KALAERD ALM RD+ALAA+QYRE A N+   GG QRG 
Sbjct: 63  LAFAEKKEALAARDEAIQQREKALAERDKALMERDNALAAIQYRENAMNYPLSGGSQRGS 122

Query: 120 KRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET-KPHQAKRAKENKIV-TKPSVSP 177
           KR+ HP Y S D+ EAL+SG+MH T+A PI+ +P+E  K  Q KR+KENK V  K + SP
Sbjct: 123 KRIPHPVYHSSDMSEALDSGEMHVTNALPISSVPAENAKSRQTKRSKENKAVGLKAAKSP 182

Query: 178 RKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWG 236
            K  +V EDLNK+ ASDGKKIK EWDSQD GLNL+NFDETTM  PVC+CTG P QCYKWG
Sbjct: 183 WKGNRVSEDLNKQGASDGKKIKVEWDSQDVGLNLINFDETTMTAPVCSCTGVPRQCYKWG 242

Query: 237 NGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLK 296
           +GGWQS+CCTTT+SSYPLPQ+PNKR ARVGGRKMSG+VFT+LLSRLAAEGHDLS+PLDLK
Sbjct: 243 SGGWQSACCTTTMSSYPLPQLPNKRRARVGGRKMSGNVFTRLLSRLAAEGHDLSIPLDLK 302

Query: 297 NFWAKHGTNRYITIK 311
           ++WA+HGTNRYITIK
Sbjct: 303 DYWARHGTNRYITIK 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483687|gb|ABK93737.1| unknown [Populus trichocarpa]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/315 (69%), Positives = 259/315 (82%), Gaps = 5/315 (1%)

Query: 2   DDGHHENGRYKMEYYKGTHAQ--WNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           D G H+NGRYK++YYK  H    WNMMP++Q+KE  NALVMNKKIM IL ERD AIRERN
Sbjct: 3   DGGQHQNGRYKIDYYKTAHPHPPWNMMPRNQVKEQTNALVMNKKIMTILIERDDAIRERN 62

Query: 60  IALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGG 119
           +A  EK+EAL  RD+A+++R+KALAERD ALM RD+ALAA+QYRE A N+   GG QRG 
Sbjct: 63  LAFAEKKEALAARDEAIQQREKALAERDKALMERDNALAAIQYRENAMNYPLSGGSQRGS 122

Query: 120 KRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET-KPHQAKRAKENKIV-TKPSVSP 177
           KR+ HP Y S D+ EAL+SG+MH T+A PI+ +P+E  K  Q KR+KENK V  K + SP
Sbjct: 123 KRIPHPVYHSSDMSEALDSGEMHVTNALPISSVPAENAKSRQTKRSKENKAVGLKAAKSP 182

Query: 178 RKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWG 236
            K  +V EDLNK+ ASDGKKIK EWDSQD GLNL+NFDETTM  PVC+CTG P QCY+WG
Sbjct: 183 WKGNRVSEDLNKQGASDGKKIKVEWDSQDVGLNLINFDETTMTAPVCSCTGVPRQCYRWG 242

Query: 237 NGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLK 296
           +GGWQS+CCTTT+SSYPLPQ+PNKR ARVGGRKMSG+VFT+LLSRLAAEGHDLS+PLDLK
Sbjct: 243 SGGWQSACCTTTMSSYPLPQLPNKRRARVGGRKMSGNVFTRLLSRLAAEGHDLSIPLDLK 302

Query: 297 NFWAKHGTNRYITIK 311
           ++WA+HGTNRYITIK
Sbjct: 303 DYWARHGTNRYITIK 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513451|ref|XP_003525427.1| PREDICTED: uncharacterized protein LOC100813103 isoform 1 [Glycine max] gi|356513453|ref|XP_003525428.1| PREDICTED: uncharacterized protein LOC100813103 isoform 2 [Glycine max] gi|356513455|ref|XP_003525429.1| PREDICTED: uncharacterized protein LOC100813103 isoform 3 [Glycine max]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/318 (66%), Positives = 253/318 (79%), Gaps = 8/318 (2%)

Query: 1   MDDG-HHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MDDG  HENGR+KMEYY+G H+ WN   QHQ+KEPN ALVMNKKI +I+AER AAI E  
Sbjct: 1   MDDGRQHENGRHKMEYYRGAHSLWNTDSQHQVKEPN-ALVMNKKIRSIMAERQAAILEIE 59

Query: 60  I--ALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQR 117
           +  A++EK EAL  RD A+ +RD+ALA+RD+AL+ RD+ALAALQ R  + NF   GG Q 
Sbjct: 60  LEAAISEKNEALAARDAAIRQRDEALAQRDNALLERDNALAALQSRNNSVNFPFGGGIQC 119

Query: 118 GGKRMHHPTYQSGDVPEA-LNSGDMHATDAKPITIIPSE-TKPHQAKRAKENKIV-TKPS 174
           G KRMHH +    ++ EA  N+ DM   DA P+T+IPSE    HQ+KR+KENK++ +K S
Sbjct: 120 GSKRMHHSSNHLSNMTEAAYNTKDMIIRDASPVTVIPSEAVNSHQSKRSKENKVINSKAS 179

Query: 175 VSPRKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCY 233
             P KVKK+GEDLN++ +S+G KI+SEWD QD G+NLV FDET M VPVCTCTG P QCY
Sbjct: 180 KPPCKVKKMGEDLNRQASSEGTKIRSEWDRQDVGVNLVAFDETIMLVPVCTCTGVPRQCY 239

Query: 234 KWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPL 293
           KWGNGGWQSSCCTTTLS YPLPQ+PNKRHAR+GGRKMSGSVFT+LLSRL +EGHDLS+PL
Sbjct: 240 KWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPL 299

Query: 294 DLKNFWAKHGTNRYITIK 311
           DLK +WA+HGTNRYITIK
Sbjct: 300 DLKEYWARHGTNRYITIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527692|ref|XP_003532442.1| PREDICTED: uncharacterized protein LOC100785547 isoform 1 [Glycine max] gi|356527694|ref|XP_003532443.1| PREDICTED: uncharacterized protein LOC100785547 isoform 2 [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/318 (66%), Positives = 253/318 (79%), Gaps = 8/318 (2%)

Query: 1   MDDGH-HENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MDDGH HEN R+KME+Y+G  + WN   QHQ+KEPN ALVMNKKI +I+AER AAI E  
Sbjct: 1   MDDGHQHENSRHKMEFYRGARSLWNTDSQHQVKEPN-ALVMNKKIRSIMAERQAAILEIE 59

Query: 60  I--ALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQR 117
           +  A++EK EAL  RD A+++RD+ALA+RD+AL+ RD+ALAALQ R  + NF   GG Q 
Sbjct: 60  LETAISEKNEALAARDAAIQQRDEALAQRDNALLERDNALAALQSRNNSVNFPFGGGIQC 119

Query: 118 GGKRMHHPTYQSGDVPEA-LNSGDMHATDAKPITIIPSE-TKPHQAKRAKENKIV-TKPS 174
           G KRMHH +    ++ EA  ++ DM   DA P+T+IPSE    HQAKR K+NK++ +K S
Sbjct: 120 GSKRMHHSSNHLSNMTEAAYSTKDMIIRDASPVTVIPSEAVNSHQAKRTKQNKVINSKAS 179

Query: 175 VSPRKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCY 233
             P KVKK+GEDLN++ +S+G KI+SEWD QD GLNLV FDET MPVPVCTCTG P QCY
Sbjct: 180 KPPCKVKKMGEDLNRQASSEGTKIRSEWDKQDVGLNLVAFDETIMPVPVCTCTGIPRQCY 239

Query: 234 KWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPL 293
           KWGNGGWQSSCCTTTLS YPLPQ+PNKRHAR+GGRKMSGSVFT+LLSRL +EGHDLS+PL
Sbjct: 240 KWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPL 299

Query: 294 DLKNFWAKHGTNRYITIK 311
           DLK +WA+HGTNRYITIK
Sbjct: 300 DLKEYWARHGTNRYITIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105285|ref|XP_002313754.1| predicted protein [Populus trichocarpa] gi|222850162|gb|EEE87709.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/320 (66%), Positives = 251/320 (78%), Gaps = 28/320 (8%)

Query: 1   MDDG-HHENGRYKMEYYKGTHAQ-----WNMMPQHQMKEPNNALVMNKKIMAILAERDAA 54
           MDDG  H+NGR+KM+YYK  H       WNMM QHQ+KE  NAL MNKKIM IL ERD A
Sbjct: 1   MDDGGQHQNGRFKMDYYKAAHPHPHPPAWNMMSQHQVKEQTNALAMNKKIMTILIERDDA 60

Query: 55  IRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGG 114
           IRERN+AL EK+EAL  RD+A+++R+KAL ERD ALM RD+ALAA+QYRE A ++   GG
Sbjct: 61  IRERNLALAEKKEALAARDEAIQQREKALVERDKALMERDNALAAIQYRENAMSYPLSGG 120

Query: 115 FQRGGKRMHHPTYQSGDVPEALNSGDMHATDAKPITIIPSET-KPHQAKRAKENKIV-TK 172
                              +AL++G+MH TDA PI+ + +ET K  Q KR+KENK V  K
Sbjct: 121 -------------------KALDTGEMHITDALPISSVTAETGKARQTKRSKENKAVGLK 161

Query: 173 PSVSPRKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQ 231
            + SPRK  +VGEDLNK+ ASDGKKIK EWDSQD GLNL+NFDETTMP PVC+CTG P Q
Sbjct: 162 AAKSPRKGSRVGEDLNKQGASDGKKIKVEWDSQDVGLNLINFDETTMPAPVCSCTGVPRQ 221

Query: 232 CYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSV 291
           CYKWG+GGWQS+CCTTT+SSYPLPQMPNKRHAR+GGRKMSG+VFT+LLSRLAAEGHDL++
Sbjct: 222 CYKWGSGGWQSACCTTTMSSYPLPQMPNKRHARIGGRKMSGNVFTRLLSRLAAEGHDLAI 281

Query: 292 PLDLKNFWAKHGTNRYITIK 311
           PLDLK++WA+HGTNRYITIK
Sbjct: 282 PLDLKDYWARHGTNRYITIK 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427790|ref|XP_002269545.1| PREDICTED: protein BASIC PENTACYSTEINE4 isoform 1 [Vitis vinifera] gi|183604859|gb|ACC64527.1| GAGA-binding transcriptional activator BBR/BPC4-like [Vitis vinifera] gi|183604861|gb|ACC64528.1| GAGA-binding transcriptional activator BBR/BPC4-like [Vitis vinifera]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 253/315 (80%), Gaps = 12/315 (3%)

Query: 1   MDDG-HHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MDDG   ENGR+K++YYKG    WNMMPQH +KE  NAL MNKK++ ILAERD AIRERN
Sbjct: 1   MDDGGQRENGRHKLDYYKGPQNPWNMMPQHHLKE-QNALTMNKKVVNILAERDNAIRERN 59

Query: 60  IALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGG 119
           IAL+EK+ ALE RD+AL +RD A++ERD+AL+ RD+A+AAL+YRE      SV   QRG 
Sbjct: 60  IALSEKKAALEERDEALMQRDAAISERDNALLERDNAIAALRYRE------SVISIQRGT 113

Query: 120 KRMHHPTYQSGDVPE-ALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIVTKPSVSP- 177
           KRM HP   + +  E + N+ ++H TDA PI+ I +++   + KR KENK V+   + P 
Sbjct: 114 KRMDHPPNHAANGAEGSYNTREVHITDAFPISTIAADSVKSR-KRTKENKAVSSKGLKPP 172

Query: 178 RKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWG 236
           RK KKV EDLN++V SDG KIKSEWDSQD GLNLV FDE+TMPVPVC+CTG P QCYKWG
Sbjct: 173 RKGKKVNEDLNRQVISDGLKIKSEWDSQDLGLNLVTFDESTMPVPVCSCTGVPRQCYKWG 232

Query: 237 NGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLK 296
           NGGWQSSCCTTTLSSYPLPQMPNKRHAR+GGRKMSGSVFT+LLSRLAAEGHDLS+PLDLK
Sbjct: 233 NGGWQSSCCTTTLSSYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSMPLDLK 292

Query: 297 NFWAKHGTNRYITIK 311
           ++WAKHGTNRYI IK
Sbjct: 293 DYWAKHGTNRYIIIK 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527696|ref|XP_003532444.1| PREDICTED: uncharacterized protein LOC100785547 isoform 3 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 250/318 (78%), Gaps = 14/318 (4%)

Query: 1   MDDGH-HENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERN 59
           MDDGH HEN R+KME+Y+G  +       HQ+KEPN ALVMNKKI +I+AER AAI E  
Sbjct: 1   MDDGHQHENSRHKMEFYRGARSL------HQVKEPN-ALVMNKKIRSIMAERQAAILEIE 53

Query: 60  I--ALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQR 117
           +  A++EK EAL  RD A+++RD+ALA+RD+AL+ RD+ALAALQ R  + NF   GG Q 
Sbjct: 54  LETAISEKNEALAARDAAIQQRDEALAQRDNALLERDNALAALQSRNNSVNFPFGGGIQC 113

Query: 118 GGKRMHHPTYQSGDVPEA-LNSGDMHATDAKPITIIPSE-TKPHQAKRAKENKIV-TKPS 174
           G KRMHH +    ++ EA  ++ DM   DA P+T+IPSE    HQAKR K+NK++ +K S
Sbjct: 114 GSKRMHHSSNHLSNMTEAAYSTKDMIIRDASPVTVIPSEAVNSHQAKRTKQNKVINSKAS 173

Query: 175 VSPRKVKKVGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCY 233
             P KVKK+GEDLN++ +S+G KI+SEWD QD GLNLV FDET MPVPVCTCTG P QCY
Sbjct: 174 KPPCKVKKMGEDLNRQASSEGTKIRSEWDKQDVGLNLVAFDETIMPVPVCTCTGIPRQCY 233

Query: 234 KWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPL 293
           KWGNGGWQSSCCTTTLS YPLPQ+PNKRHAR+GGRKMSGSVFT+LLSRL +EGHDLS+PL
Sbjct: 234 KWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPL 293

Query: 294 DLKNFWAKHGTNRYITIK 311
           DLK +WA+HGTNRYITIK
Sbjct: 294 DLKEYWARHGTNRYITIK 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2053086	296	BPC4 "basic pentacysteine 4" [	0.929	0.976	0.565	1.2e-90
TAIR|locus:2162291	342	BPC6 "basic pentacysteine 6" [	0.363	0.330	0.801	3.3e-71
UNIPROTKB|Q8GUC3	350	BBR "Protein Barley B recombin	0.334	0.297	0.576	2.4e-37
TAIR|locus:2045842	283	BPC1 "basic pentacysteine1" [A	0.398	0.438	0.504	3.2e-33
TAIR|locus:2823945	279	BPC2 "basic pentacysteine 2" [	0.334	0.372	0.538	3.7e-32

TAIR|locus:2053086 BPC4 "basic pentacysteine 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 176/311 (56%), Positives = 225/311 (72%)

Query:     4 GHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALT 63
             G ++N R+K +Y+KG  + WNM+PQHQ+KE +NALVMNKKIM+ILAERDAA+ ERN A++
Sbjct:     5 GQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERNQAVS 64

Query:    64 EKREALETRDQALEERDKALAERDDALMARDSXXXXXXXXXXXXNFSSVGGFQRGGKRMH 123
              K+EA+  RD+AL++RDKAL+ERD AL+ RD+            NF+       GGK + 
Sbjct:    65 AKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSLNFAL-----SGGKCV- 118

Query:   124 HPTYQSGDVPEALNSGDMHATDAKPITIIPSETKPHQA--KRAKENKIXXXXXXXXXXXX 181
                   GD  +    G+ H  +  P++ IP E    +   KR KENK             
Sbjct:   119 -----DGD--DCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRKKENK------QGLSKVK 165

Query:   182 XXGEDLNKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGW 240
               GEDLN++V + GKK +++WDSQD GLNLV FDETTMPVP+C+CTG+  QCYKWGNGGW
Sbjct:   166 KVGEDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGW 225

Query:   241 QSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWA 300
             QSSCCTTTLS YPLPQMPNKRH+R+GGRKMSG+VF++LLSRL+AEG+DLS P+DLK++WA
Sbjct:   226 QSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWA 285

Query:   301 KHGTNRYITIK 311
             +HGTNRYITIK
Sbjct:   286 RHGTNRYITIK 296

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

TAIR|locus:2162291 BPC6 "basic pentacysteine 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 93/116 (80%), Positives = 100/116 (86%)

Query:   199 KSEWDSQD--GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQ 256
             KS+W SQ+  GLN V +DETTMP PVC+CTG   QCYKWGNGGWQSSCCTTTLS YPLP 
Sbjct:   227 KSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPA 286

Query:   257 MPNKRHARVGGRKMSGSVFTKLLSRLAAEGH-DLSVPLDLKNFWAKHGTNRYITIK 311
             +PNKRHARVGGRKMSGS F KLLSRLAAEGH DLS P+DLK+ WAKHGTNRYITIK
Sbjct:   287 LPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

UNIPROTKB|Q8GUC3 BBR "Protein Barley B recombinant" [Hordeum vulgare (taxid:4513)]

 Score = 377 (137.8 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 60/104 (57%), Positives = 83/104 (79%)

Query:   208 LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
             +N ++FD + +P PVC+CTG P QCY+WG GGWQS+CCTT++S+YPLP    +R AR+ G
Sbjct:   247 INGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAG 306

Query:   268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
             RKMS   F K+L +LA EG++L+ P+DLK FWAKHGTN+++TI+
Sbjct:   307 RKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2045842 BPC1 "basic pentacysteine1" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 63/125 (50%), Positives = 86/125 (68%)

Query:   188 NKKVASDGKKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCT 246
             N  V    +++K    S D  +N V+ D + +PVPVCTCTGTP QCY+WG GGWQS+CCT
Sbjct:   159 NNNVQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCT 218

Query:   247 TTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNR 306
             T +S YPLP    +R AR+ GRKMS   F K+L +L+ EG+     +DLK+ WA+HGTN+
Sbjct:   219 TNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNK 278

Query:   307 YITIK 311
             ++TI+
Sbjct:   279 FVTIR 283

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

TAIR|locus:2823945 BPC2 "basic pentacysteine 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 56/104 (53%), Positives = 79/104 (75%)

Query:   208 LNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
             +N V+ D + +PVP+CTCTG P QCY+WG GGWQS+CCTT +S +PLP    +R AR+ G
Sbjct:   176 INGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISG 235

Query:   268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
             RKMS   F K+L +LA++G +   P+DLK+ WA+HGTN+++TI+
Sbjct:   236 RKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       285   0.00085  115 3  11 23  0.42    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  228 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.80u 0.17s 23.97t   Elapsed:  00:00:01
  Total cpu time:  23.80u 0.17s 23.97t   Elapsed:  00:00:01
  Start:  Thu May  9 23:28:03 2013   End:  Thu May  9 23:28:04 2013

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5VSA8	BBRD_ORYSJ	No assigned EC number	0.4940	0.9774	0.9184	yes	no
Q8S8C6	BPC4_ARATH	No assigned EC number	0.5948	0.9292	0.9763	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
pfam06217	301	pfam06217, GAGA_bind, GAGA binding protein-like fa	1e-112

>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family

 Score =  326 bits (837), Expect = e-112
 Identities = 140/317 (44%), Positives = 182/317 (57%), Gaps = 22/317 (6%)

Query: 1   MDDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNI 60
           MDD  H N R    Y              Q     + L +   +M+ +AERDA  RERN+
Sbjct: 1   MDDDGHLNIRNWGYY----------FEPAQAPSFKSNLGLQ--LMSSIAERDAKPRERNL 48

Query: 61  ALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAANFSSVGGFQRGGK 120
           AL+EK+ A   RD A  +RD  +AER++ALM RD+  AALQ  E +       G   G K
Sbjct: 49  ALSEKKAAYAERDMAFLQRDAWIAERNNALMERDNKFAALQPVENSLPPGC--GILPGTK 106

Query: 121 RMHHP--TYQSGDVPEALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIVTKPSVS-P 177
            +HH    +          + +MH  +  PI+  P E K  + K+ K+ +    P    P
Sbjct: 107 GIHHLQMLHHPQLGDNPYGTREMHHLEVPPISTAPPEAK--EVKKPKKGQSPKVPKAPKP 164

Query: 178 RKVKKVGEDLNKKVASDGKK--IKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYK 234
           +K KK G   N+ V   G     K +W SQD  +N V+ D + MPVPVC+CTG P QCYK
Sbjct: 165 KKPKKKGSVSNRSVKMPGIDPRSKPDWKSQDLVINGVSMDISGMPVPVCSCTGAPRQCYK 224

Query: 235 WGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLD 294
           WGNGGWQS+CCTTT+S YPLP    +R AR+ GRKMSG  F KLL RLAAEG+DLS P+D
Sbjct: 225 WGNGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSGGAFKKLLERLAAEGYDLSNPID 284

Query: 295 LKNFWAKHGTNRYITIK 311
           LK+ WAKHGTN+++TI+
Sbjct: 285 LKDHWAKHGTNKFVTIR 301

This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	100.0
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	99.02
COG4372	499	Uncharacterized protein conserved in bacteria with	97.33
COG4372	499	Uncharacterized protein conserved in bacteria with	96.05
PF04094	828	DUF390: Protein of unknown function (DUF390); Inte	95.48
PF04094	828	DUF390: Protein of unknown function (DUF390); Inte	95.32
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	91.0
PRK12704	520	phosphodiesterase; Provisional	89.98
PRK12704	520	phosphodiesterase; Provisional	86.77
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	84.89
PRK00106	535	hypothetical protein; Provisional	84.42
PRK00106	535	hypothetical protein; Provisional	84.01

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=100.00  E-value=6.3e-121  Score=850.10  Aligned_cols=291  Identities=53%  Similarity=0.868  Sum_probs=254.5

Q ss_pred             CCCcccccccccccccCCCcccccCCCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524            2 DDGHHENGRYKMEYYKGTHAQWNMMPQHQMKEPNNALVMNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDK   81 (311)
Q Consensus         2 d~g~~engR~k~d~yk~~~~~w~m~~~~~~K~~~~~~vMn~ki~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~   81 (311)
                      |+|++|  ||+. ||+-.  .       ++|..     |+.+||++|+|||.||.||+.||+|++.|+++||+||++||.
T Consensus         3 ddg~~~--R~wg-~ye~~--~-------s~K~h-----LGLqlMs~maERDaai~er~~al~ekk~a~aeRDma~~qRD~   65 (301)
T PF06217_consen    3 DDGSLE--RNWG-YYEPQ--N-------SMKGH-----LGLQLMSIMAERDAAIRERNLALSEKKAAFAERDMAYLQRDA   65 (301)
T ss_pred             Cccccc--cCcc-ccccc--c-------ccccc-----ccceeeccccccCcccccccchhccccccccchhhhhhhhhh
Confidence            456777  9999 99911  2       22321     345599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCccCCCccccCCCCCC-CCCcc-cCCCCCCCCCCCCCccCCCCCC-
Q 021524           82 ALAERDDALMARDSALAALQYREAAAN--FSSVGGFQRGGKRMHHPTYQS-GDVPE-ALNSGDMHATDAKPITIIPSET-  156 (311)
Q Consensus        82 AIaERD~AIaERD~AlaaL~~Ren~~n--~~p~~~~~~g~K~~hh~~~~~-~~~~e-~~~~~e~~~~~a~p~s~~~~e~-  156 (311)
                      ||+|||+||+|||++|++|++++++++  +|++|++.+|+|++||+++++ .++.+ .|++.++++.+++||++.+++. 
T Consensus        66 aiaern~ai~ERd~a~a~l~~~~~~~n~~~p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  145 (301)
T PF06217_consen   66 AIAERNNAIMERDNAIAALQPRNNNGNHHCPPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHNIDAPPISTAPPESK  145 (301)
T ss_pred             hhccchhhcccchhhhhhccccCCCccccCCCCCcccCCCccCCCcccccccccCCCCCCccccccccccccccCCcccc
Confidence            999999999999999999999999976  889999999999999988744 47777 8889999999999998877666 


Q ss_pred             CcchhhhhhcccccCCCCCCCcccccccccccccccCCC--ccccccccccC-CCcceeccCCCCCccceeccCCCcccc
Q 021524          157 KPHQAKRAKENKIVTKPSVSPRKVKKVGEDLNKKVASDG--KKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCY  233 (311)
Q Consensus       157 k~~~~kr~k~~~~~~k~~k~~~k~kk~~~d~n~~~~s~g--~~~~~~~~~~~-~~n~~~~d~s~~p~p~csctg~~~~cy  233 (311)
                      ++++.|+.+..+. .|. ++++|+||.+.+.|+.+..++  ...+.+||++| |||+|+||+|+||||||||||+|||||
T Consensus       146 ~~~~~k~~~~~~~-~k~-~k~~k~kk~~~~~~~~~~~~~~~~~~k~~~k~~dl~in~i~~D~s~mP~PvCSCTG~pqqCY  223 (301)
T PF06217_consen  146 KSKPPKKRKRPKS-PKS-PKPKKPKKKPSVPNRNVNPPGSDQRSKPEKKNQDLVINGINFDESTMPIPVCSCTGVPQQCY  223 (301)
T ss_pred             cCCCCCCCCCCCC-CCC-CCCCCCCCCCCCchhhccccccccccccccccccccccceeeccCCCCCcccccCCCCcccc
Confidence            5545443333321 132 335577777777776655445  68999999999 999999999999999999999999999


Q ss_pred             ccCCCcccccccccccccccCCCCCCCCcccccccccchHHHHHHHHHHhhccCCCCCcccchhHhhhhCCcceeecC
Q 021524          234 KWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK  311 (311)
Q Consensus       234 ~wg~ggwqs~cctt~~s~yplp~~~~kr~ar~~grkms~~af~kll~rla~eg~~~s~p~dlk~~wakhgtnr~itik  311 (311)
                      ||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+|||||+||||||||||||||
T Consensus       224 rWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDLK~hWAKHGTNryvTIk  301 (301)
T PF06217_consen  224 RWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDLKDHWAKHGTNRYVTIK  301 (301)
T ss_pred             ccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccchHHHHHhcCCcceEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=99.02  E-value=5.2e-11  Score=112.91  Aligned_cols=57  Identities=32%  Similarity=0.519  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021524           45 MAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQYREAAAN  108 (311)
Q Consensus        45 ~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~Ren~~n  108 (311)
                      +.+|+    .++|||.||.||+.||+|+..|+++||.|+.+||.||++|++||   .+|+++++
T Consensus        26 LqlMs----~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~ai---~ERd~a~a   82 (301)
T PF06217_consen   26 LQLMS----IMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNAI---MERDNAIA   82 (301)
T ss_pred             ceeec----cccccCcccccccchhccccccccchhhhhhhhhhhhccchhhc---ccchhhhh
Confidence            36777    77788888888888888888888888888888888888888877   77777776

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.33  E-value=0.00099  Score=66.89  Aligned_cols=58  Identities=19%  Similarity=0.365  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           45 MAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAALQY  102 (311)
Q Consensus        45 ~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL~~  102 (311)
                      ..++..|+.+++.|.+|..+++.+|.+||.-|.++|.+|+.|++.|.+|+..+..|+.
T Consensus       209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt  266 (499)
T COG4372         209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLET  266 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999999999999999999999999999877654

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.05  E-value=0.029  Score=56.73  Aligned_cols=51  Identities=20%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           47 ILAERDAAIRERNIALTEKREALE-------TRDQALEERDKALAERDDALMARDSAL   97 (311)
Q Consensus        47 aiaERD~AI~ERd~AIaERD~Aia-------ERD~AiaERD~AIaERD~AIaERD~Al   97 (311)
                      -|++++..++.|..|+..|++-++       +++.+|.+||.-|.+++.+|+.|++.|
T Consensus       197 ~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I  254 (499)
T COG4372         197 QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQI  254 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            366777766666666666665555       455555555555666666666677666

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice

Probab=95.48  E-value=0.056  Score=57.76  Aligned_cols=21  Identities=43%  Similarity=0.572  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021524           75 ALEERDKALAERDDALMARDS   95 (311)
Q Consensus        75 AiaERD~AIaERD~AIaERD~   95 (311)
                      +.+|++.++..||.|++|||.
T Consensus       552 a~AE~E~aLRLREeA~aER~~  572 (828)
T PF04094_consen  552 AAAEEESALRLREEALAERDR  572 (828)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            333333333334444443333

They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice

Probab=95.32  E-value=0.066  Score=57.23  Aligned_cols=48  Identities=38%  Similarity=0.491  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           50 ERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL   97 (311)
Q Consensus        50 ERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al   97 (311)
                      +|+.++.+|+..|+...++.+|++.+|..||.|++|||.++.+++.+.
T Consensus       534 ~Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~aEaaa  581 (828)
T PF04094_consen  534 ERERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRAEAAA  581 (828)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444455555555555555555555555555555444

They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=91.00  E-value=1.9  Score=43.90  Aligned_cols=52  Identities=17%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           49 AERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAAL  100 (311)
Q Consensus        49 aERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~AlaaL  100 (311)
                      .+|+..|..|+..|.+|...|..|+..|..|+..|.++...|.++...+.++
T Consensus        72 ~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~  123 (514)
T TIGR03319        72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEK  123 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555555555555555555544443

>PRK12704 phosphodiesterase; Provisional

Probab=89.98  E-value=2.7  Score=42.92  Aligned_cols=47  Identities=23%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           51 RDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL   97 (311)
Q Consensus        51 RD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al   97 (311)
                      |...|.+|+..|.+|...|..|...|.+|+..|.+|++.|.++...+
T Consensus        80 ~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eL  126 (520)
T PRK12704         80 RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL  126 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555555555555555554444444444433

>PRK12704 phosphodiesterase; Provisional

Probab=86.77  E-value=5.5  Score=40.77  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           46 AILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALAA   99 (311)
Q Consensus        46 aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Alaa   99 (311)
                      .-+.+|+..|.+|...|..|...|.+|+..|.+|...|.++.+.+.+++..+.+
T Consensus        82 ~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~  135 (520)
T PRK12704         82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE  135 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666666666554433

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=84.89  E-value=7.7  Score=39.68  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           45 MAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDALMARDSALA   98 (311)
Q Consensus        45 ~aaiaERD~AI~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Ala   98 (311)
                      ..-+.+|+..|..|...|..|...|.+|+..|.++...|.+|...+.++...+.
T Consensus        75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~  128 (514)
T TIGR03319        75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE  128 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666666666666666666666666666666665555544433

>PRK00106 hypothetical protein; Provisional

Probab=84.42  E-value=8.8  Score=39.90  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=18.6

Q ss_pred             cccccccccchHHHHHHHHHHhh
Q 021524          262 HARVGGRKMSGSVFTKLLSRLAA  284 (311)
Q Consensus       262 ~ar~~grkms~~af~kll~rla~  284 (311)
                      .+|.|-|.+|...|-+.|+.|-.
T Consensus       443 a~Rpgar~~s~~~~i~rl~~lE~  465 (535)
T PRK00106        443 SARPGARNESMENYIKRLRDLEE  465 (535)
T ss_pred             cCCCCCCcCCHHHHHHHHHHHHH
Confidence            35678888999999999988854

>PRK00106 hypothetical protein; Provisional

Probab=84.01  E-value=6.3  Score=40.92  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=12.2

Q ss_pred             cceeccCCCccccccCCCccccc
Q 021524          221 PVCTCTGTPHQCYKWGNGGWQSS  243 (311)
Q Consensus       221 p~csctg~~~~cy~wg~ggwqs~  243 (311)
                      -...+-|-.+.=+..|..-|+.|
T Consensus       333 e~~~~lg~l~~r~sy~qnl~~HS  355 (535)
T PRK00106        333 DLIKIMGRLQFRTSYGQNVLRHS  355 (535)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHH
Confidence            34445555544444555567665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 50  ERDAAIRERNIALTEKREALETRDQALEERDKALAERDDAL-----MARDSALAALQYRE 104
           E+   ++E + A     +  E R++A ++ ++    + + +       R +  A  Q  +
Sbjct: 93  EQRKRLQELDAASKVMEQ--EWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150

Query: 105 A 105
           A
Sbjct: 151 A 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	92.03
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.03

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=92.03  E-value=0.51  Score=36.51  Aligned_cols=43  Identities=30%  Similarity=0.476  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021524           55 IRERNIALTEKREALETRDQALEERDKALAERDDALMARDSAL   97 (311)
Q Consensus        55 I~ERd~AIaERD~AiaERD~AiaERD~AIaERD~AIaERD~Al   97 (311)
                      |.+=+.||.+|++-|.++|.-|.+.+..|.|+|..|.+..+.|
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL   63 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777777777777777777777777777776666555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.03  E-value=4.1  Score=38.36  Aligned_cols=28  Identities=21%  Similarity=0.109  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHhhccCCCCCCccCCCccccCC
Q 021524           95 SALAALQYREAAANFSSVGGFQRGGKRMHHP  125 (311)
Q Consensus        95 ~AlaaL~~Ren~~n~~p~~~~~~g~K~~hh~  125 (311)
                      ...++|...+..++.+|+   .|-+.|+|||
T Consensus       569 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~  596 (597)
T 3oja_B          569 LKRQKVKQLEAKKNRNPD---TRRVSHHHHH  596 (597)
T ss_dssp             HHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHHHHhcCCCc---cccccccccC
Confidence            334455667777777777   6666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00